Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321360 | XP_003627848.2 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 7.88e-85 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321360 | sp|Q3SZE2|PFD1_BOVIN | 36.937 | 111 | 70 | 0 | 3 | 113 | 6 | 116 | 4.27e-18 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321360 | B7FMP0 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 3.76e-85 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044330 | Msa1321360 | 0.810433 | 1.155614e-50 | -8.615850e-47 |
| Msa0667790 | Msa1321360 | 0.808183 | 3.509314e-50 | -8.615850e-47 |
| Msa0827280 | Msa1321360 | 0.804079 | 2.566044e-49 | -8.615850e-47 |
| Msa0137990 | Msa1321360 | 0.802780 | 4.768747e-49 | -8.615850e-47 |
| Msa0147250 | Msa1321360 | 0.805039 | 1.618390e-49 | -8.615850e-47 |
| Msa0149000 | Msa1321360 | 0.840633 | 7.729576e-58 | -8.615850e-47 |
| Msa0197510 | Msa1321360 | 0.801789 | 7.628014e-49 | -8.615850e-47 |
| Msa1282240 | Msa1321360 | 0.837612 | 4.690707e-57 | -8.615850e-47 |
| Msa1051880 | Msa1321360 | 0.815745 | 7.897124e-52 | -8.615850e-47 |
| Msa1081560 | Msa1321360 | 0.802623 | 5.138518e-49 | -8.615850e-47 |
| Msa0266350 | Msa1321360 | 0.800528 | 1.381313e-48 | -8.615850e-47 |
| Msa1186560 | Msa1321360 | 0.987337 | 6.747544e-170 | -8.615850e-47 |
| Msa0532980 | Msa1321360 | 0.805906 | 1.064433e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321360 | MtrunA17_Chr8g0353091 | 98.438 | 128 | 2 | 0 | 1 | 128 | 1 | 128 | 7.25e-89 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321360 | AT2G07340.1 | 68.750 | 128 | 40 | 0 | 1 | 128 | 1 | 128 | 7.12e-62 | 186 |
| Msa1321360 | AT2G07340.2 | 68.750 | 128 | 39 | 1 | 1 | 128 | 1 | 127 | 1.09e-59 | 180 |
Find 39 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCGAATGTTGTCTTTAT+AGG | 0.183275 | 8_4:-26855404 | Msa1321360:three_prime_UTR |
| CTGTTTCTTTGGAACGCATC+TGG | 0.186816 | 8_4:+26856278 | None:intergenic |
| TCTTAATTCTCAGTCACATT+AGG | 0.261345 | 8_4:-26857795 | Msa1321360:five_prime_UTR |
| CTCCGTTCAATTGATTGATA+TGG | 0.272066 | 8_4:-26857734 | Msa1321360:exon |
| ACGCTTCTTGTCTGTTTCTT+TGG | 0.277466 | 8_4:+26856267 | None:intergenic |
| CTTAATTCTCAGTCACATTA+GGG | 0.321198 | 8_4:-26857794 | Msa1321360:five_prime_UTR |
| TTGAACGAATAGAAACCTTT+AGG | 0.330258 | 8_4:-26855489 | Msa1321360:three_prime_UTR |
| TCTCGAATGTTGTCTTTATA+GGG | 0.338046 | 8_4:-26855403 | Msa1321360:three_prime_UTR |
| CTGCCTGCTACGTCTGTTCA+TGG | 0.357342 | 8_4:-26855441 | Msa1321360:three_prime_UTR |
| AATTGTGGCCAGGTTTGTAT+TGG | 0.395225 | 8_4:-26855950 | Msa1321360:intron |
| CACAATTTCACAAATCCTAA+AGG | 0.395598 | 8_4:+26855474 | None:intergenic |
| CTGCCAGTAAAATTCAATAA+TGG | 0.397167 | 8_4:+26855521 | None:intergenic |
| CATAATTTGACGAGCAAGAC+CGG | 0.429125 | 8_4:+26855569 | None:intergenic |
| GAGAATTCTTCGATCGGAAA+AGG | 0.435446 | 8_4:+26857754 | None:intergenic |
| TGTTTCTTTGGAACGCATCT+GGG | 0.436906 | 8_4:+26856279 | None:intergenic |
| TAGGCTTTCGTTGAAATTCA+AGG | 0.455683 | 8_4:-26857582 | Msa1321360:CDS |
| TTGTAGACATTAGTATCGTC+AGG | 0.474681 | 8_4:+26856211 | None:intergenic |
| GACAATGGAGGAGCTGAAGC+AGG | 0.474978 | 8_4:-26856236 | Msa1321360:CDS |
| ACAGAGCTCAAAAGAATACT+TGG | 0.492644 | 8_4:-26855646 | Msa1321360:intron |
| CTGCTACGTCTGTTCATGGT+TGG | 0.517274 | 8_4:-26855437 | Msa1321360:three_prime_UTR |
| GTCTCTTATCTGACTTGAGA+AGG | 0.519451 | 8_4:-26855317 | Msa1321360:three_prime_UTR |
| GGCAACGTTAATGAACGAAC+AGG | 0.526861 | 8_4:-26855920 | Msa1321360:CDS |
| AACTACAAGGAAATTAAAGC+AGG | 0.535671 | 8_4:-26857547 | Msa1321360:intron |
| CGAACAGGAGAACAAGTTCA+AGG | 0.550157 | 8_4:-26855905 | Msa1321360:CDS |
| ACTAATGTCTACAAATCCAT+TGG | 0.553731 | 8_4:-26856202 | Msa1321360:intron |
| CAACCATGAACAGACGTAGC+AGG | 0.557479 | 8_4:+26855438 | None:intergenic |
| TTAGGATTTGTGAAATTGTG+AGG | 0.570039 | 8_4:-26855471 | Msa1321360:three_prime_UTR |
| GGAGAAGCAGATTGCAGAGG+TGG | 0.574472 | 8_4:-26855625 | Msa1321360:CDS |
| TGCCATATCAATCAATTGAA+CGG | 0.576128 | 8_4:+26857732 | None:intergenic |
| TGAACGGAGAATTCTTCGAT+CGG | 0.587944 | 8_4:+26857748 | None:intergenic |
| TTGCTGAGTAAATTGCAAAA+CGG | 0.588812 | 8_4:-26857854 | Msa1321360:five_prime_UTR |
| GTCGTATGATAGAAACTACA+AGG | 0.618512 | 8_4:-26857560 | Msa1321360:CDS |
| ATAATTTGACGAGCAAGACC+GGG | 0.620149 | 8_4:+26855570 | None:intergenic |
| GAGCTGTTACAACAAGATCC+CGG | 0.623013 | 8_4:-26855588 | Msa1321360:CDS |
| CAGGTTTGTATTGGAGACGA+AGG | 0.626778 | 8_4:-26855941 | Msa1321360:CDS |
| TATAAAGACAACATTCGAGA+GGG | 0.646291 | 8_4:+26855406 | None:intergenic |
| AAGGACATTTACTTGTAATG+CGG | 0.654969 | 8_4:+26855864 | None:intergenic |
| CTATAAAGACAACATTCGAG+AGG | 0.693362 | 8_4:+26855405 | None:intergenic |
| CTTGGAGAAGCAGATTGCAG+AGG | 0.694862 | 8_4:-26855628 | Msa1321360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTAATCAGTTTATTT+TGG | - | chr8_4:26857004-26857023 | Msa1321360:intron | 10.0% |
| !! | TAAATTTGCGAAATAAAAAT+AGG | - | chr8_4:26855209-26855228 | Msa1321360:three_prime_UTR | 15.0% |
| !! | AAAATTAGAGCAATAAAAAA+GGG | + | chr8_4:26855469-26855488 | None:intergenic | 15.0% |
| !! | AAAAATTAGAGCAATAAAAA+AGG | + | chr8_4:26855470-26855489 | None:intergenic | 15.0% |
| !! | TAATAATTTGAGAAAATGAA+AGG | - | chr8_4:26855889-26855908 | Msa1321360:CDS | 15.0% |
| !! | AATAATTTGAGAAAATGAAA+GGG | - | chr8_4:26855890-26855909 | Msa1321360:CDS | 15.0% |
| !!! | AATTTGAGTTTTTTTTATCA+AGG | - | chr8_4:26856049-26856068 | Msa1321360:intron | 15.0% |
| !! | AGAAAAAAATGTATAAAAGT+AGG | - | chr8_4:26856163-26856182 | Msa1321360:intron | 15.0% |
| !!! | AATATCAAAGTTTTCTTTAT+TGG | + | chr8_4:26856708-26856727 | None:intergenic | 15.0% |
| !!! | ATTATTTCTGAAGAAAAATA+GGG | + | chr8_4:26856990-26857009 | None:intergenic | 15.0% |
| !!! | AATTATTTCTGAAGAAAAAT+AGG | + | chr8_4:26856991-26857010 | None:intergenic | 15.0% |
| !! | TTGAAATTGTAGAAGAAAAA+GGG | + | chr8_4:26855422-26855441 | None:intergenic | 20.0% |
| !! | ATTGAAATTGTAGAAGAAAA+AGG | + | chr8_4:26855423-26855442 | None:intergenic | 20.0% |
| !! | AAATTAGAGCAATAAAAAAG+GGG | + | chr8_4:26855468-26855487 | None:intergenic | 20.0% |
| !!! | TGAATAATTGAACTTTGTTT+TGG | - | chr8_4:26855666-26855685 | Msa1321360:intron | 20.0% |
| !!! | GAATAATTGAACTTTGTTTT+GGG | - | chr8_4:26855667-26855686 | Msa1321360:intron | 20.0% |
| !!! | AATAATTGAACTTTGTTTTG+GGG | - | chr8_4:26855668-26855687 | Msa1321360:intron | 20.0% |
| !! | AAACACTCATAATTTATGAA+AGG | + | chr8_4:26856295-26856314 | None:intergenic | 20.0% |
| !! | ATACAATTCTAAATACTTGT+AGG | + | chr8_4:26856946-26856965 | None:intergenic | 20.0% |
| !! | TCTAATACAATCTTAAATTG+TGG | - | chr8_4:26857131-26857150 | Msa1321360:intron | 20.0% |
| !!! | TATCCATTATTGAATTTTAC+TGG | - | chr8_4:26857572-26857591 | Msa1321360:CDS | 20.0% |
| ! | TGAAATTGTAGAAGAAAAAG+GGG | + | chr8_4:26855421-26855440 | None:intergenic | 25.0% |
| ! | TGTTTGATGCATAAAAATGT+AGG | - | chr8_4:26855495-26855514 | Msa1321360:three_prime_UTR | 25.0% |
| !!! | TTTGTTTTGGGGATTATTAT+GGG | - | chr8_4:26855679-26855698 | Msa1321360:intron | 25.0% |
| ! | TTGTAGTAATTAGACTAAGT+TGG | - | chr8_4:26855726-26855745 | Msa1321360:intron | 25.0% |
| !! | GTGTATGTTTTGTAATGTAT+TGG | - | chr8_4:26855836-26855855 | Msa1321360:intron | 25.0% |
| ! | TTCTACATGGTAAAAAGTAA+AGG | - | chr8_4:26856000-26856019 | Msa1321360:intron | 25.0% |
| !!! | TTTTTTATCAAGGTTGAGTT+TGG | - | chr8_4:26856059-26856078 | Msa1321360:intron | 25.0% |
| !! | TTTTTATCAAGGTTGAGTTT+GGG | - | chr8_4:26856060-26856079 | Msa1321360:intron | 25.0% |
| !! | TAAATTATGAGTGTTTTTCC+TGG | - | chr8_4:26856299-26856318 | Msa1321360:intron | 25.0% |
| !!! | AACTCTAAATTCTTTGAAAC+TGG | + | chr8_4:26856473-26856492 | None:intergenic | 25.0% |
| ! | CAAGAAGTTATATCCTTATT+AGG | - | chr8_4:26856740-26856759 | Msa1321360:intron | 25.0% |
| !! | AGATATCTTTTACATACCAA+TGG | + | chr8_4:26856913-26856932 | None:intergenic | 25.0% |
| ! | TGGTATGTAAAAGATATCTT+AGG | - | chr8_4:26856914-26856933 | Msa1321360:intron | 25.0% |
| !!! | AGTTTATTTTGGTTTTTGCA+GGG | - | chr8_4:26857015-26857034 | Msa1321360:intron | 25.0% |
| ! | ATTCTGTAGCATGTTTAAAT+AGG | + | chr8_4:26857060-26857079 | None:intergenic | 25.0% |
| ! | ATCTGAGTGAACAAATAATA+TGG | - | chr8_4:26857421-26857440 | Msa1321360:intron | 25.0% |
| TTGCTGAGTAAATTGCAAAA+CGG | - | chr8_4:26855242-26855261 | Msa1321360:three_prime_UTR | 30.0% | |
| TCTTAATTCTCAGTCACATT+AGG | - | chr8_4:26855301-26855320 | Msa1321360:three_prime_UTR | 30.0% | |
| CTTAATTCTCAGTCACATTA+GGG | - | chr8_4:26855302-26855321 | Msa1321360:three_prime_UTR | 30.0% | |
| TGCCATATCAATCAATTGAA+CGG | + | chr8_4:26855367-26855386 | None:intergenic | 30.0% | |
| AACTACAAGGAAATTAAAGC+AGG | - | chr8_4:26855549-26855568 | Msa1321360:exon | 30.0% | |
| !!! | CTTTGTTTTGGGGATTATTA+TGG | - | chr8_4:26855678-26855697 | Msa1321360:intron | 30.0% |
| !! | AGTAAAGGTTAAAGTACTGA+AGG | - | chr8_4:26856015-26856034 | Msa1321360:intron | 30.0% |
| !! | GTAAAGGTTAAAGTACTGAA+GGG | - | chr8_4:26856016-26856035 | Msa1321360:intron | 30.0% |
| GCTCTTTATGAAAACTACTT+GGG | + | chr8_4:26856110-26856129 | None:intergenic | 30.0% | |
| TGCTCTTTATGAAAACTACT+TGG | + | chr8_4:26856111-26856130 | None:intergenic | 30.0% | |
| ! | AGATTCTTGCTGATTATACA+TGG | - | chr8_4:26856200-26856219 | Msa1321360:intron | 30.0% |
| ! | GATTCTTGCTGATTATACAT+GGG | - | chr8_4:26856201-26856220 | Msa1321360:intron | 30.0% |
| ! | TTCCTGGTAGTTTTTGTATA+AGG | - | chr8_4:26856315-26856334 | Msa1321360:intron | 30.0% |
| ACTAATGTCTACAAATCCAT+TGG | - | chr8_4:26856894-26856913 | Msa1321360:intron | 30.0% | |
| !!! | CAGTTTATTTTGGTTTTTGC+AGG | - | chr8_4:26857014-26857033 | Msa1321360:intron | 30.0% |
| AGAACAAAAGCTTCATTGTT+GGG | - | chr8_4:26857082-26857101 | Msa1321360:intron | 30.0% | |
| AAGGACATTTACTTGTAATG+CGG | + | chr8_4:26857235-26857254 | None:intergenic | 30.0% | |
| AGAAGTTTCCATAAAAGTGA+AGG | + | chr8_4:26857258-26857277 | None:intergenic | 30.0% | |
| GTGAACAAATAATATGGCTT+TGG | - | chr8_4:26857427-26857446 | Msa1321360:intron | 30.0% | |
| CTGCCAGTAAAATTCAATAA+TGG | + | chr8_4:26857578-26857597 | None:intergenic | 30.0% | |
| ! | TTATTGAATTTTACTGGCAG+TGG | - | chr8_4:26857578-26857597 | Msa1321360:CDS | 30.0% |
| TTGAACGAATAGAAACCTTT+AGG | - | chr8_4:26857607-26857626 | Msa1321360:intron | 30.0% | |
| CACAATTTCACAAATCCTAA+AGG | + | chr8_4:26857625-26857644 | None:intergenic | 30.0% | |
| TTAGGATTTGTGAAATTGTG+AGG | - | chr8_4:26857625-26857644 | Msa1321360:intron | 30.0% | |
| TATAAAGACAACATTCGAGA+GGG | + | chr8_4:26857693-26857712 | None:intergenic | 30.0% | |
| TCTCGAATGTTGTCTTTATA+GGG | - | chr8_4:26857693-26857712 | Msa1321360:intron | 30.0% | |
| CTCCGTTCAATTGATTGATA+TGG | - | chr8_4:26855362-26855381 | Msa1321360:three_prime_UTR | 35.0% | |
| ! | AAAAGGGGATTGAGTTGTTA+CGG | + | chr8_4:26855406-26855425 | None:intergenic | 35.0% |
| TAGGCTTTCGTTGAAATTCA+AGG | - | chr8_4:26855514-26855533 | Msa1321360:three_prime_UTR | 35.0% | |
| GTCGTATGATAGAAACTACA+AGG | - | chr8_4:26855536-26855555 | Msa1321360:exon | 35.0% | |
| !!! | GGTACCTTTTGTTTTTGAGA+GGG | - | chr8_4:26855700-26855719 | Msa1321360:intron | 35.0% |
| ACTACCCTCTCAAAAACAAA+AGG | + | chr8_4:26855707-26855726 | None:intergenic | 35.0% | |
| AACCAACACTTCAGATTGAA+GGG | + | chr8_4:26855982-26856001 | None:intergenic | 35.0% | |
| GTCCTTATACAAAAACTACC+AGG | + | chr8_4:26856320-26856339 | None:intergenic | 35.0% | |
| GGAATAAGCACAGTACATAT+AGG | + | chr8_4:26856436-26856455 | None:intergenic | 35.0% | |
| TATTACTACTTGTGTGTGCT+AGG | - | chr8_4:26856579-26856598 | Msa1321360:intron | 35.0% | |
| TTGTAGACATTAGTATCGTC+AGG | + | chr8_4:26856888-26856907 | None:intergenic | 35.0% | |
| GAGAACAAAAGCTTCATTGT+TGG | - | chr8_4:26857081-26857100 | Msa1321360:intron | 35.0% | |
| TACAATCTTAAATTGTGGCC+AGG | - | chr8_4:26857136-26857155 | Msa1321360:intron | 35.0% | |
| !! | ATGTCCTTCCTTCACTTTTA+TGG | - | chr8_4:26857247-26857266 | Msa1321360:intron | 35.0% |
| GTTTCCATAAAAGTGAAGGA+AGG | + | chr8_4:26857254-26857273 | None:intergenic | 35.0% | |
| ACAGAGCTCAAAAGAATACT+TGG | - | chr8_4:26857450-26857469 | Msa1321360:intron | 35.0% | |
| CTATAAAGACAACATTCGAG+AGG | + | chr8_4:26857694-26857713 | None:intergenic | 35.0% | |
| CTCTCGAATGTTGTCTTTAT+AGG | - | chr8_4:26857692-26857711 | Msa1321360:intron | 35.0% | |
| GAGAATTCTTCGATCGGAAA+AGG | + | chr8_4:26855345-26855364 | None:intergenic | 40.0% | |
| TGAACGGAGAATTCTTCGAT+CGG | + | chr8_4:26855351-26855370 | None:intergenic | 40.0% | |
| !!! | GGGTACCTTTTGTTTTTGAG+AGG | - | chr8_4:26855699-26855718 | Msa1321360:intron | 40.0% |
| ATTGAAGGGTTGTCTAGTGT+CGG | + | chr8_4:26855968-26855987 | None:intergenic | 40.0% | |
| ! | AACCCTTCAATCTGAAGTGT+TGG | - | chr8_4:26855977-26855996 | Msa1321360:intron | 40.0% |
| GAACCAACACTTCAGATTGA+AGG | + | chr8_4:26855983-26856002 | None:intergenic | 40.0% | |
| !! | TCTGAAGTGTTGGTTCTACA+TGG | - | chr8_4:26855987-26856006 | Msa1321360:intron | 40.0% |
| !! | AAGGTTAAAGTACTGAAGGG+AGG | - | chr8_4:26856019-26856038 | Msa1321360:intron | 40.0% |
| ! | AAACTGGAAGAGCACAATTC+TGG | + | chr8_4:26856457-26856476 | None:intergenic | 40.0% |
| ! | TCTAGAGTCAGTGATATGTG+AGG | + | chr8_4:26856530-26856549 | None:intergenic | 40.0% |
| ! | GTCTAAAGCAACGCCTAATA+AGG | + | chr8_4:26856756-26856775 | None:intergenic | 40.0% |
| TATATTATCCCCTTGCATGC+AGG | - | chr8_4:26856788-26856807 | Msa1321360:intron | 40.0% | |
| !! | TGTTTCTTTGGAACGCATCT+GGG | + | chr8_4:26856820-26856839 | None:intergenic | 40.0% |
| ! | ACGCTTCTTGTCTGTTTCTT+TGG | + | chr8_4:26856832-26856851 | None:intergenic | 40.0% |
| !!! | GAAGCGTGCTTTTTTGACAA+TGG | - | chr8_4:26856845-26856864 | Msa1321360:intron | 40.0% |
| AATTGTGGCCAGGTTTGTAT+TGG | - | chr8_4:26857146-26857165 | Msa1321360:intron | 40.0% | |
| ATAATTTGACGAGCAAGACC+GGG | + | chr8_4:26857529-26857548 | None:intergenic | 40.0% | |
| CATAATTTGACGAGCAAGAC+CGG | + | chr8_4:26857530-26857549 | None:intergenic | 40.0% | |
| ! | TTGAATTTTACTGGCAGTGG+CGG | - | chr8_4:26857581-26857600 | Msa1321360:CDS | 40.0% |
| ! | GTCTCTTATCTGACTTGAGA+AGG | - | chr8_4:26857779-26857798 | Msa1321360:five_prime_UTR | 40.0% |
| GTGTCTGACATCGACAAATG+TGG | + | chr8_4:26855935-26855954 | None:intergenic | 45.0% | |
| TACTTGTGTGTGCTAGGATG+TGG | - | chr8_4:26856585-26856604 | Msa1321360:intron | 45.0% | |
| !! | CTGTTTCTTTGGAACGCATC+TGG | + | chr8_4:26856821-26856840 | None:intergenic | 45.0% |
| !!! | GCGTGCTTTTTTGACAATGG+AGG | - | chr8_4:26856848-26856867 | Msa1321360:intron | 45.0% |
| CTTCGTCTCCAATACAAACC+TGG | + | chr8_4:26857157-26857176 | None:intergenic | 45.0% | |
| CAGGTTTGTATTGGAGACGA+AGG | - | chr8_4:26857155-26857174 | Msa1321360:intron | 45.0% | |
| GGCAACGTTAATGAACGAAC+AGG | - | chr8_4:26857176-26857195 | Msa1321360:intron | 45.0% | |
| CGAACAGGAGAACAAGTTCA+AGG | - | chr8_4:26857191-26857210 | Msa1321360:intron | 45.0% | |
| GAGCTGTTACAACAAGATCC+CGG | - | chr8_4:26857508-26857527 | Msa1321360:intron | 45.0% | |
| ! | TGAATTTTACTGGCAGTGGC+GGG | - | chr8_4:26857582-26857601 | Msa1321360:CDS | 45.0% |
| ! | GTCTAGTGTCGGACACGTAA+TGG | + | chr8_4:26855957-26855976 | None:intergenic | 50.0% |
| GCTGATTATACATGGGCGAG+TGG | - | chr8_4:26856208-26856227 | Msa1321360:CDS | 50.0% | |
| GATTATACATGGGCGAGTGG+TGG | - | chr8_4:26856211-26856230 | Msa1321360:CDS | 50.0% | |
| GGCGAGTGGTGGTTATTATG+TGG | - | chr8_4:26856222-26856241 | Msa1321360:CDS | 50.0% | |
| GCATTGCACAAACGTGACAG+TGG | - | chr8_4:26856610-26856629 | Msa1321360:intron | 50.0% | |
| TGCAGGGAAAACGTAAGTCG+TGG | - | chr8_4:26857031-26857050 | Msa1321360:intron | 50.0% | |
| CTTGGAGAAGCAGATTGCAG+AGG | - | chr8_4:26857468-26857487 | Msa1321360:intron | 50.0% | |
| CAACCATGAACAGACGTAGC+AGG | + | chr8_4:26857661-26857680 | None:intergenic | 50.0% | |
| CTGCTACGTCTGTTCATGGT+TGG | - | chr8_4:26857659-26857678 | Msa1321360:intron | 50.0% | |
| GACAATGGAGGAGCTGAAGC+AGG | - | chr8_4:26856860-26856879 | Msa1321360:intron | 55.0% | |
| GGAGAAGCAGATTGCAGAGG+TGG | - | chr8_4:26857471-26857490 | Msa1321360:intron | 55.0% | |
| CTGCCTGCTACGTCTGTTCA+TGG | - | chr8_4:26857655-26857674 | Msa1321360:intron | 55.0% | |
| GGTCTGCACCTGCATGCAAG+GGG | + | chr8_4:26856799-26856818 | None:intergenic | 60.0% | |
| GGGTCTGCACCTGCATGCAA+GGG | + | chr8_4:26856800-26856819 | None:intergenic | 60.0% | |
| TGGGTCTGCACCTGCATGCA+AGG | + | chr8_4:26856801-26856820 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 26855209 | 26857909 | 26855209 | ID=Msa1321360;Name=Msa1321360 |
| chr8_4 | mRNA | 26855209 | 26857909 | 26855209 | ID=Msa1321360-mRNA-1;Parent=Msa1321360;Name=Msa1321360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=172|0.8|0.83|1|1|1|6|345|128 |
| chr8_4 | exon | 26855209 | 26855664 | 26855209 | ID=Msa1321360-mRNA-1:exon:9163;Parent=Msa1321360-mRNA-1 |
| chr8_4 | exon | 26855876 | 26855960 | 26855876 | ID=Msa1321360-mRNA-1:exon:9162;Parent=Msa1321360-mRNA-1 |
| chr8_4 | exon | 26856076 | 26856082 | 26856076 | ID=Msa1321360-mRNA-1:exon:9161;Parent=Msa1321360-mRNA-1 |
| chr8_4 | exon | 26856203 | 26856308 | 26856203 | ID=Msa1321360-mRNA-1:exon:9160;Parent=Msa1321360-mRNA-1 |
| chr8_4 | exon | 26857548 | 26857601 | 26857548 | ID=Msa1321360-mRNA-1:exon:9159;Parent=Msa1321360-mRNA-1 |
| chr8_4 | exon | 26857714 | 26857909 | 26857714 | ID=Msa1321360-mRNA-1:exon:9158;Parent=Msa1321360-mRNA-1 |
| chr8_4 | five_prime_UTR | 26857738 | 26857909 | 26857738 | ID=Msa1321360-mRNA-1:five_prime_utr;Parent=Msa1321360-mRNA-1 |
| chr8_4 | CDS | 26857714 | 26857737 | 26857714 | ID=Msa1321360-mRNA-1:cds;Parent=Msa1321360-mRNA-1 |
| chr8_4 | CDS | 26857548 | 26857601 | 26857548 | ID=Msa1321360-mRNA-1:cds;Parent=Msa1321360-mRNA-1 |
| chr8_4 | CDS | 26856203 | 26856308 | 26856203 | ID=Msa1321360-mRNA-1:cds;Parent=Msa1321360-mRNA-1 |
| chr8_4 | CDS | 26856076 | 26856082 | 26856076 | ID=Msa1321360-mRNA-1:cds;Parent=Msa1321360-mRNA-1 |
| chr8_4 | CDS | 26855876 | 26855960 | 26855876 | ID=Msa1321360-mRNA-1:cds;Parent=Msa1321360-mRNA-1 |
| chr8_4 | CDS | 26855554 | 26855664 | 26855554 | ID=Msa1321360-mRNA-1:cds;Parent=Msa1321360-mRNA-1 |
| chr8_4 | three_prime_UTR | 26855209 | 26855553 | 26855209 | ID=Msa1321360-mRNA-1:three_prime_utr;Parent=Msa1321360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
