AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373030 MtrunA17_Chr2g0320431 71.200 250 17 5 51 256 20 258 2.51e-112 324
Msa1373030 MtrunA17_Chr2g0320451 71.264 174 13 2 35 171 199 372 1.89e-71 236
Msa1373030 MtrunA17_Chr2g0314241 73.103 145 33 1 10 148 10 154 2.50e-69 211
Msa1373030 MtrunA17_Chr2g0314231 55.000 140 22 1 49 147 5 144 6.85e-42 140
Msa1373030 MtrunA17_Chr3g0079841 78.571 56 12 0 201 256 156 211 2.94e-21 90.1
Msa1373030 MtrunA17_Chr7g0265211 26.404 178 103 2 1 153 198 372 1.15e-12 67.4
Msa1373030 MtrunA17_Chr2g0320401 81.818 33 6 0 51 83 50 82 6.95e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373030 AT2G27980.1 38.660 194 76 6 24 179 342 530 6.05e-27 109

Find 74 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGGGAAAATGGGGTTTC+TGG 0.209531 tig0019325:-184258 Msa1373030:CDS
TTCTGGGGTTTCGCGGATTA+TGG 0.250867 tig0019325:-184241 Msa1373030:CDS
TCTTCTGGCTACTGGGATTC+TGG 0.255622 tig0019325:-184181 Msa1373030:CDS
AATGTTGTTGAAAGGGAAAA+TGG 0.353344 tig0019325:-184267 Msa1373030:CDS
AGAGGATGCGCTCTTGGTTT+CGG 0.354013 tig0019325:-183412 Msa1373030:CDS
TGTCAAGGTGAAGGATCTTC+TGG 0.356510 tig0019325:-184196 Msa1373030:CDS
CTCTGGTAGTTGGTGGGAAA+AGG 0.363414 tig0019325:-184349 Msa1373030:CDS
AGTGTCTGTGCTGGACTAAT+TGG 0.366436 tig0019325:+182484 None:intergenic
GTGAAGGATCTTCTGGCTAC+TGG 0.382782 tig0019325:-184189 Msa1373030:CDS
AAAGGGAAAATGGGGTTTCT+GGG 0.382880 tig0019325:-184257 Msa1373030:CDS
TGAAATCACCCAGGACCATT+TGG 0.397269 tig0019325:+183662 None:intergenic
TGAGAATGGAAAACTCCTTC+GGG 0.415866 tig0019325:-183737 Msa1373030:CDS
AAGGATAACGATGTTGTTGT+TGG 0.429532 tig0019325:-184315 Msa1373030:CDS
GATTATACTTACCTTGAGAA+TGG 0.429569 tig0019325:-183751 Msa1373030:CDS
ATGTTGTTGAAAGGGAAAAT+GGG 0.431646 tig0019325:-184266 Msa1373030:CDS
AAAAGAAGAGGATGCGCTCT+TGG 0.439362 tig0019325:-183418 Msa1373030:CDS
ATGGGGTTTCTGGGGTTTCG+CGG 0.444414 tig0019325:-184248 Msa1373030:CDS
ACTTCTTCCAAGAAAATAAG+AGG 0.454192 tig0019325:-183337 Msa1373030:intron
TTGAGAATGGAAAACTCCTT+CGG 0.454228 tig0019325:-183738 Msa1373030:CDS
AGAAGATCCTTCACCTTGAC+AGG 0.462800 tig0019325:+184198 None:intergenic
TGTGACCAAACAATGAAGAT+AGG 0.463101 tig0019325:-184372 None:intergenic
TGAAGATAGGCTCTGGTAGT+TGG 0.466413 tig0019325:-184359 Msa1373030:CDS
ATCCAACGGAAGACTTGAAC+AGG 0.468127 tig0019325:+183702 None:intergenic
GTCTCTTTCAACTCCATGCA+TGG 0.468548 tig0019325:+183463 None:intergenic
ATATATAGTCACGGTGGACC+TGG 0.469482 tig0019325:-182416 Msa1373030:CDS
TAAAGAGGTCCAAATGGTCC+TGG 0.476200 tig0019325:-183671 Msa1373030:CDS
TTATGGTGAAGCCTGGTAAG+AGG 0.482687 tig0019325:-184224 Msa1373030:CDS
TCAGTGCATGGAACAATTGA+CGG 0.496206 tig0019325:-182454 Msa1373030:CDS
TCTGGTAGTTGGTGGGAAAA+GGG 0.496285 tig0019325:-184348 Msa1373030:CDS
GTTGGATACATTGGATAAAG+AGG 0.497086 tig0019325:-183686 Msa1373030:CDS
GAGATATGTCAAGGGACATA+AGG 0.497217 tig0019325:-184145 Msa1373030:intron
TGCTGCTAATGTTGTTGAAA+GGG 0.499182 tig0019325:-184274 Msa1373030:CDS
AAGTCTTCCGTTGGATACAT+TGG 0.504489 tig0019325:-183695 Msa1373030:CDS
TTCTCAAGGTAAGTATAATC+CGG 0.505601 tig0019325:+183754 None:intergenic
ATTGGATAAAGAGGTCCAAA+TGG 0.516952 tig0019325:-183677 Msa1373030:CDS
CTGGCTACTGGGATTCTGGA+GGG 0.517418 tig0019325:-184177 Msa1373030:CDS
TCGCGGATTATGGTGAAGCC+TGG 0.518339 tig0019325:-184231 Msa1373030:CDS
TGTTGTTGAAAGGGAAAATG+GGG 0.518988 tig0019325:-184265 Msa1373030:CDS
TAGTGCTAGTAAACGTCCTC+CGG 0.529930 tig0019325:-183773 Msa1373030:CDS
TGCCTGTTCAAGTCTTCCGT+TGG 0.532331 tig0019325:-183704 Msa1373030:CDS
TTGACAGGAAACCTCTTACC+AGG 0.534154 tig0019325:+184213 None:intergenic
TGAAGGATCTTCTGGCTACT+GGG 0.535951 tig0019325:-184188 Msa1373030:CDS
GGAAAAGGGTGAAGAAATCA+AGG 0.538672 tig0019325:-184334 Msa1373030:CDS
CAAACAATGAAGATAGGCTC+TGG 0.543943 tig0019325:-184366 None:intergenic
AATATTTGTTTCAACTGCAG+AGG 0.546957 tig0019325:-183625 Msa1373030:intron
TTGCTGCTAATGTTGTTGAA+AGG 0.552470 tig0019325:-184275 Msa1373030:CDS
TGGTAAGAGGTTTCCTGTCA+AGG 0.557637 tig0019325:-184211 Msa1373030:CDS
AGATAGGCTCTGGTAGTTGG+TGG 0.570332 tig0019325:-184356 Msa1373030:CDS
TCTGGCTACTGGGATTCTGG+AGG 0.573761 tig0019325:-184178 Msa1373030:CDS
ATTGAAAGTGAGATATGTCA+AGG 0.573844 tig0019325:-184154 Msa1373030:CDS
GTCAATTTCTGAATCTAACA+AGG 0.573857 tig0019325:-183509 Msa1373030:CDS
GAAGAACCGAGTGTCTGTGC+TGG 0.576107 tig0019325:+182475 None:intergenic
CAGTGCATGGAACAATTGAC+GGG 0.580953 tig0019325:-182453 Msa1373030:CDS
GAGTTGAAAGAGACTTCTGC+AGG 0.582564 tig0019325:-183454 Msa1373030:CDS
CTGGGTTCTGAACAGCTGAA+AGG 0.586271 tig0019325:-182397 Msa1373030:CDS
GATAGGCTCTGGTAGTTGGT+GGG 0.587131 tig0019325:-184355 Msa1373030:CDS
TATATAGTCACGGTGGACCT+GGG 0.588733 tig0019325:-182415 Msa1373030:CDS
ACTAGTATGCAATCCATGCA+TGG 0.592882 tig0019325:-183476 Msa1373030:CDS
ACTTCTTCCAAGAAAAGAAG+AGG 0.593684 tig0019325:-183430 Msa1373030:CDS
AAAGAGGTCCAAATGGTCCT+GGG 0.599169 tig0019325:-183670 Msa1373030:CDS
GAGGTTTCCTGTCAAGGTGA+AGG 0.604010 tig0019325:-184205 Msa1373030:CDS
AAGGGAAAATGGGGTTTCTG+GGG 0.606981 tig0019325:-184256 Msa1373030:CDS
CTTTCAGCTGTTCAGAACCC+AGG 0.626176 tig0019325:+182398 None:intergenic
ATTGACGGGAAATTTGATGA+CGG 0.626327 tig0019325:-182439 Msa1373030:CDS
ACACTCGGTTCTTCAGTGCA+TGG 0.628634 tig0019325:-182466 Msa1373030:CDS
ATTAGTCCAGCACAGACACT+CGG 0.635032 tig0019325:-182481 Msa1373030:CDS
TCTTTATCCAATGTATCCAA+CGG 0.644524 tig0019325:+183688 None:intergenic
TCAATTTCTGAATCTAACAA+GGG 0.669663 tig0019325:-183508 Msa1373030:CDS
TTGAAAGTGAGATATGTCAA+GGG 0.671458 tig0019325:-184153 Msa1373030:CDS
TGATGACGGATATATAGTCA+CGG 0.676944 tig0019325:-182425 Msa1373030:CDS
AGGCATTCATGACATCCCGA+AGG 0.693693 tig0019325:+183722 None:intergenic
TCAAGGTAAGTATAATCCGG+AGG 0.695456 tig0019325:+183757 None:intergenic
ACTGCATTGTGAAATCACCC+AGG 0.736544 tig0019325:+183653 None:intergenic
TGACGGATATATAGTCACGG+TGG 0.799576 tig0019325:-182422 Msa1373030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACAAGTTTAATCAAA+AGG + tig0019325:183191-183210 None:intergenic 15.0%
!! AAATTACAAGTTTAATCAAA+AGG + tig0019325:183191-183210 None:intergenic 15.0%
!!! GTTTTGAACTTTTTTGATTT+TGG - tig0019325:182622-182641 Msa1373030:intron 20.0%
!!! GTTTTGAACTTTTTTGATTT+TGG - tig0019325:182622-182641 Msa1373030:intron 20.0%
! TTTATTCGTAAATGATGTGT+AGG - tig0019325:182716-182735 Msa1373030:intron 25.0%
!!! TATTGTTTTTTTTGCTTGTG+TGG - tig0019325:182846-182865 Msa1373030:intron 25.0%
!!! ATTGTTTTTTTTGCTTGTGT+GGG - tig0019325:182847-182866 Msa1373030:intron 25.0%
!!! AATTTTGATGAACTGTTTGT+AGG - tig0019325:183206-183225 Msa1373030:intron 25.0%
!!! ATTTTGATGAACTGTTTGTA+GGG - tig0019325:183207-183226 Msa1373030:intron 25.0%
! TCAATTTCTGAATCTAACAA+GGG - tig0019325:183230-183249 Msa1373030:intron 25.0%
! TCAAAAAATAAGAGAGAAGA+AGG - tig0019325:183350-183369 Msa1373030:CDS 25.0%
!!! TGTAATACCTCTTATTTTCT+TGG + tig0019325:183411-183430 None:intergenic 25.0%
!! TGAAATATTTTTCTGTGATG+TGG - tig0019325:183574-183593 Msa1373030:intron 25.0%
!!! TGATTCTTTTGTTTTGAAAC+TGG - tig0019325:183679-183698 Msa1373030:CDS 25.0%
!! TCGTTTCTTTAATTTAGACT+TGG - tig0019325:183735-183754 Msa1373030:CDS 25.0%
! ATTATGACATCGTTTAATCT+GGG - tig0019325:183832-183851 Msa1373030:intron 25.0%
! AACTAATGGAAACAACTTAT+AGG - tig0019325:184017-184036 Msa1373030:intron 25.0%
! AACAAAGTTCTTATCTATGT+TGG - tig0019325:184171-184190 Msa1373030:CDS 25.0%
! TTTATTCGTAAATGATGTGT+AGG - tig0019325:182716-182735 Msa1373030:intron 25.0%
!!! TATTGTTTTTTTTGCTTGTG+TGG - tig0019325:182846-182865 Msa1373030:intron 25.0%
!!! ATTGTTTTTTTTGCTTGTGT+GGG - tig0019325:182847-182866 Msa1373030:intron 25.0%
!!! AATTTTGATGAACTGTTTGT+AGG - tig0019325:183206-183225 Msa1373030:intron 25.0%
!!! ATTTTGATGAACTGTTTGTA+GGG - tig0019325:183207-183226 Msa1373030:intron 25.0%
! TCAATTTCTGAATCTAACAA+GGG - tig0019325:183230-183249 Msa1373030:intron 25.0%
! TCAAAAAATAAGAGAGAAGA+AGG - tig0019325:183350-183369 Msa1373030:CDS 25.0%
!!! TGTAATACCTCTTATTTTCT+TGG + tig0019325:183411-183430 None:intergenic 25.0%
!! TGAAATATTTTTCTGTGATG+TGG - tig0019325:183574-183593 Msa1373030:intron 25.0%
!!! TGATTCTTTTGTTTTGAAAC+TGG - tig0019325:183679-183698 Msa1373030:CDS 25.0%
!! TCGTTTCTTTAATTTAGACT+TGG - tig0019325:183735-183754 Msa1373030:CDS 25.0%
! ATTATGACATCGTTTAATCT+GGG - tig0019325:183832-183851 Msa1373030:intron 25.0%
! AACTAATGGAAACAACTTAT+AGG - tig0019325:184017-184036 Msa1373030:intron 25.0%
! AACAAAGTTCTTATCTATGT+TGG - tig0019325:184171-184190 Msa1373030:CDS 25.0%
AATGTTGTTGAAAGGGAAAA+TGG - tig0019325:182471-182490 Msa1373030:CDS 30.0%
ATGTTGTTGAAAGGGAAAAT+GGG - tig0019325:182472-182491 Msa1373030:CDS 30.0%
ATTGAAAGTGAGATATGTCA+AGG - tig0019325:182584-182603 Msa1373030:intron 30.0%
TTGAAAGTGAGATATGTCAA+GGG - tig0019325:182585-182604 Msa1373030:intron 30.0%
!!! GAACTTTTTTGATTTTGGTC+TGG - tig0019325:182627-182646 Msa1373030:intron 30.0%
GTGAAATTGAGAATGATGTT+CGG - tig0019325:182653-182672 Msa1373030:intron 30.0%
!!! GGATTTTTTTTGCTATCTTG+TGG - tig0019325:182674-182693 Msa1373030:intron 30.0%
!!! TGTTGTTTTTTGTTGAGAGT+AGG - tig0019325:182908-182927 Msa1373030:intron 30.0%
TTCTCAAGGTAAGTATAATC+CGG + tig0019325:182987-183006 None:intergenic 30.0%
GATTATACTTACCTTGAGAA+TGG - tig0019325:182987-183006 Msa1373030:intron 30.0%
TCTTTATCCAATGTATCCAA+CGG + tig0019325:183053-183072 None:intergenic 30.0%
AATATTTGTTTCAACTGCAG+AGG - tig0019325:183113-183132 Msa1373030:intron 30.0%
GTCAATTTCTGAATCTAACA+AGG - tig0019325:183229-183248 Msa1373030:intron 30.0%
!!! TTCTGCAGAAGTAGTTTTTT+CGG + tig0019325:183381-183400 None:intergenic 30.0%
ACTTCTTCCAAGAAAATAAG+AGG - tig0019325:183401-183420 Msa1373030:CDS 30.0%
GGACGTATAGTCAATATTAT+TGG + tig0019325:183480-183499 None:intergenic 30.0%
AGAAACGAATCATCTATGAA+TGG + tig0019325:183723-183742 None:intergenic 30.0%
CATTATGACATCGTTTAATC+TGG - tig0019325:183831-183850 Msa1373030:intron 30.0%
AATGTTGTTGAAAGGGAAAA+TGG - tig0019325:182471-182490 Msa1373030:CDS 30.0%
ATGTTGTTGAAAGGGAAAAT+GGG - tig0019325:182472-182491 Msa1373030:CDS 30.0%
ATTGAAAGTGAGATATGTCA+AGG - tig0019325:182584-182603 Msa1373030:intron 30.0%
TTGAAAGTGAGATATGTCAA+GGG - tig0019325:182585-182604 Msa1373030:intron 30.0%
!!! GAACTTTTTTGATTTTGGTC+TGG - tig0019325:182627-182646 Msa1373030:intron 30.0%
GTGAAATTGAGAATGATGTT+CGG - tig0019325:182653-182672 Msa1373030:intron 30.0%
!!! GGATTTTTTTTGCTATCTTG+TGG - tig0019325:182674-182693 Msa1373030:intron 30.0%
!!! TGTTGTTTTTTGTTGAGAGT+AGG - tig0019325:182908-182927 Msa1373030:intron 30.0%
TTCTCAAGGTAAGTATAATC+CGG + tig0019325:182987-183006 None:intergenic 30.0%
GATTATACTTACCTTGAGAA+TGG - tig0019325:182987-183006 Msa1373030:intron 30.0%
TCTTTATCCAATGTATCCAA+CGG + tig0019325:183053-183072 None:intergenic 30.0%
AATATTTGTTTCAACTGCAG+AGG - tig0019325:183113-183132 Msa1373030:intron 30.0%
GTCAATTTCTGAATCTAACA+AGG - tig0019325:183229-183248 Msa1373030:intron 30.0%
!!! TTCTGCAGAAGTAGTTTTTT+CGG + tig0019325:183381-183400 None:intergenic 30.0%
ACTTCTTCCAAGAAAATAAG+AGG - tig0019325:183401-183420 Msa1373030:CDS 30.0%
GGACGTATAGTCAATATTAT+TGG + tig0019325:183480-183499 None:intergenic 30.0%
AGAAACGAATCATCTATGAA+TGG + tig0019325:183723-183742 None:intergenic 30.0%
CATTATGACATCGTTTAATC+TGG - tig0019325:183831-183850 Msa1373030:intron 30.0%
AAGGATAACGATGTTGTTGT+TGG - tig0019325:182423-182442 Msa1373030:CDS 35.0%
TTGCTGCTAATGTTGTTGAA+AGG - tig0019325:182463-182482 Msa1373030:CDS 35.0%
TGCTGCTAATGTTGTTGAAA+GGG - tig0019325:182464-182483 Msa1373030:CDS 35.0%
TGTTGTTGAAAGGGAAAATG+GGG - tig0019325:182473-182492 Msa1373030:CDS 35.0%
! TCAGGAATTTTGTGCTTTTG+TGG - tig0019325:182783-182802 Msa1373030:intron 35.0%
! CAGGAATTTTGTGCTTTTGT+GGG - tig0019325:182784-182803 Msa1373030:intron 35.0%
GCATGCAACTCAAAAACATT+CGG + tig0019325:182942-182961 None:intergenic 35.0%
!!! AATGTTTTTGAGTTGCATGC+TGG - tig0019325:182942-182961 Msa1373030:intron 35.0%
TTGAGAATGGAAAACTCCTT+CGG - tig0019325:183000-183019 Msa1373030:intron 35.0%
GTTGGATACATTGGATAAAG+AGG - tig0019325:183052-183071 Msa1373030:intron 35.0%
ATTGGATAAAGAGGTCCAAA+TGG - tig0019325:183061-183080 Msa1373030:intron 35.0%
AATTACATAGTGTCACAGCT+AGG + tig0019325:183162-183181 None:intergenic 35.0%
ACTTCTTCCAAGAAAAGAAG+AGG - tig0019325:183308-183327 Msa1373030:intron 35.0%
TATACGTCCATCATGAGTTA+GGG - tig0019325:183491-183510 Msa1373030:CDS 35.0%
ATGTATACCCTAACTCATGA+TGG + tig0019325:183501-183520 None:intergenic 35.0%
GTGATGTGGAAATAGAAGTA+AGG - tig0019325:183588-183607 Msa1373030:intron 35.0%
!!! GAGTTTTGGTTGACTTCTTT+TGG - tig0019325:183616-183635 Msa1373030:intron 35.0%
TCTATCATAAGTTGTGTCGA+TGG + tig0019325:183810-183829 None:intergenic 35.0%
ATTTACTGCCATAAGCACAT+AGG - tig0019325:183906-183925 Msa1373030:intron 35.0%
AAACTCTCCTAGAGAACTAA+TGG - tig0019325:184003-184022 Msa1373030:intron 35.0%
! GTTGTTTCCATTAGTTCTCT+AGG + tig0019325:184013-184032 None:intergenic 35.0%
ATTGACGGGAAATTTGATGA+CGG - tig0019325:184299-184318 Msa1373030:CDS 35.0%
!! TGATGACGGATATATAGTCA+CGG - tig0019325:184313-184332 Msa1373030:CDS 35.0%
AAGGATAACGATGTTGTTGT+TGG - tig0019325:182423-182442 Msa1373030:CDS 35.0%
TTGCTGCTAATGTTGTTGAA+AGG - tig0019325:182463-182482 Msa1373030:CDS 35.0%
TGCTGCTAATGTTGTTGAAA+GGG - tig0019325:182464-182483 Msa1373030:CDS 35.0%
TGTTGTTGAAAGGGAAAATG+GGG - tig0019325:182473-182492 Msa1373030:CDS 35.0%
! TCAGGAATTTTGTGCTTTTG+TGG - tig0019325:182783-182802 Msa1373030:intron 35.0%
! CAGGAATTTTGTGCTTTTGT+GGG - tig0019325:182784-182803 Msa1373030:intron 35.0%
GCATGCAACTCAAAAACATT+CGG + tig0019325:182942-182961 None:intergenic 35.0%
!!! AATGTTTTTGAGTTGCATGC+TGG - tig0019325:182942-182961 Msa1373030:intron 35.0%
TTGAGAATGGAAAACTCCTT+CGG - tig0019325:183000-183019 Msa1373030:intron 35.0%
GTTGGATACATTGGATAAAG+AGG - tig0019325:183052-183071 Msa1373030:intron 35.0%
ATTGGATAAAGAGGTCCAAA+TGG - tig0019325:183061-183080 Msa1373030:intron 35.0%
AATTACATAGTGTCACAGCT+AGG + tig0019325:183162-183181 None:intergenic 35.0%
ACTTCTTCCAAGAAAAGAAG+AGG - tig0019325:183308-183327 Msa1373030:intron 35.0%
TATACGTCCATCATGAGTTA+GGG - tig0019325:183491-183510 Msa1373030:CDS 35.0%
ATGTATACCCTAACTCATGA+TGG + tig0019325:183501-183520 None:intergenic 35.0%
GTGATGTGGAAATAGAAGTA+AGG - tig0019325:183588-183607 Msa1373030:intron 35.0%
!!! GAGTTTTGGTTGACTTCTTT+TGG - tig0019325:183616-183635 Msa1373030:intron 35.0%
TCTATCATAAGTTGTGTCGA+TGG + tig0019325:183810-183829 None:intergenic 35.0%
ATTTACTGCCATAAGCACAT+AGG - tig0019325:183906-183925 Msa1373030:intron 35.0%
AAACTCTCCTAGAGAACTAA+TGG - tig0019325:184003-184022 Msa1373030:intron 35.0%
! GTTGTTTCCATTAGTTCTCT+AGG + tig0019325:184013-184032 None:intergenic 35.0%
ATTGACGGGAAATTTGATGA+CGG - tig0019325:184299-184318 Msa1373030:CDS 35.0%
!! TGATGACGGATATATAGTCA+CGG - tig0019325:184313-184332 Msa1373030:CDS 35.0%
GGAAAAGGGTGAAGAAATCA+AGG - tig0019325:182404-182423 Msa1373030:CDS 40.0%
AAAGGGAAAATGGGGTTTCT+GGG - tig0019325:182481-182500 Msa1373030:CDS 40.0%
GAGATATGTCAAGGGACATA+AGG - tig0019325:182593-182612 Msa1373030:intron 40.0%
! CCTTGTAAATCCTTTTCTCC+CGG + tig0019325:182750-182769 None:intergenic 40.0%
CAAGGTGTGATCAAAGATTC+AGG - tig0019325:182765-182784 Msa1373030:intron 40.0%
! TGCTTTTGTGGGAGTTGTAA+GGG - tig0019325:182795-182814 Msa1373030:intron 40.0%
GAATCAGGCAAGTAAATGGA+GGG - tig0019325:182818-182837 Msa1373030:intron 40.0%
TCAAGGTAAGTATAATCCGG+AGG + tig0019325:182984-183003 None:intergenic 40.0%
! GAAGGAGTTTTCCATTCTCA+AGG + tig0019325:183001-183020 None:intergenic 40.0%
TGAGAATGGAAAACTCCTTC+GGG - tig0019325:183001-183020 Msa1373030:intron 40.0%
AAGTCTTCCGTTGGATACAT+TGG - tig0019325:183043-183062 Msa1373030:intron 40.0%
ACTAGTATGCAATCCATGCA+TGG - tig0019325:183262-183281 Msa1373030:intron 40.0%
!!! GCAGAAGTAGTTTTTTCGGA+AGG + tig0019325:183377-183396 None:intergenic 40.0%
CTATACGTCCATCATGAGTT+AGG - tig0019325:183490-183509 Msa1373030:CDS 40.0%
!! GAAGTAAGGAGCATGAGTTT+TGG - tig0019325:183602-183621 Msa1373030:intron 40.0%
! ATCGAAAGCTTTATCGCACT+AGG + tig0019325:183870-183889 None:intergenic 40.0%
AACAGTCACCTATGTGCTTA+TGG + tig0019325:183917-183936 None:intergenic 40.0%
TAAGCACATAGGTGACTGTT+TGG - tig0019325:183917-183936 Msa1373030:intron 40.0%
AAGCACATAGGTGACTGTTT+GGG - tig0019325:183918-183937 Msa1373030:intron 40.0%
TTGGGAGAGCTTATGGATAT+TGG - tig0019325:183936-183955 Msa1373030:intron 40.0%
TCAGTGCATGGAACAATTGA+CGG - tig0019325:184284-184303 Msa1373030:CDS 40.0%
GGAAAAGGGTGAAGAAATCA+AGG - tig0019325:182404-182423 Msa1373030:CDS 40.0%
AAAGGGAAAATGGGGTTTCT+GGG - tig0019325:182481-182500 Msa1373030:CDS 40.0%
GAGATATGTCAAGGGACATA+AGG - tig0019325:182593-182612 Msa1373030:intron 40.0%
! CCTTGTAAATCCTTTTCTCC+CGG + tig0019325:182750-182769 None:intergenic 40.0%
CAAGGTGTGATCAAAGATTC+AGG - tig0019325:182765-182784 Msa1373030:intron 40.0%
! TGCTTTTGTGGGAGTTGTAA+GGG - tig0019325:182795-182814 Msa1373030:intron 40.0%
GAATCAGGCAAGTAAATGGA+GGG - tig0019325:182818-182837 Msa1373030:intron 40.0%
TCAAGGTAAGTATAATCCGG+AGG + tig0019325:182984-183003 None:intergenic 40.0%
! GAAGGAGTTTTCCATTCTCA+AGG + tig0019325:183001-183020 None:intergenic 40.0%
TGAGAATGGAAAACTCCTTC+GGG - tig0019325:183001-183020 Msa1373030:intron 40.0%
AAGTCTTCCGTTGGATACAT+TGG - tig0019325:183043-183062 Msa1373030:intron 40.0%
ACTAGTATGCAATCCATGCA+TGG - tig0019325:183262-183281 Msa1373030:intron 40.0%
!!! GCAGAAGTAGTTTTTTCGGA+AGG + tig0019325:183377-183396 None:intergenic 40.0%
CTATACGTCCATCATGAGTT+AGG - tig0019325:183490-183509 Msa1373030:CDS 40.0%
!! GAAGTAAGGAGCATGAGTTT+TGG - tig0019325:183602-183621 Msa1373030:intron 40.0%
! ATCGAAAGCTTTATCGCACT+AGG + tig0019325:183870-183889 None:intergenic 40.0%
AACAGTCACCTATGTGCTTA+TGG + tig0019325:183917-183936 None:intergenic 40.0%
TAAGCACATAGGTGACTGTT+TGG - tig0019325:183917-183936 Msa1373030:intron 40.0%
AAGCACATAGGTGACTGTTT+GGG - tig0019325:183918-183937 Msa1373030:intron 40.0%
TTGGGAGAGCTTATGGATAT+TGG - tig0019325:183936-183955 Msa1373030:intron 40.0%
TCAGTGCATGGAACAATTGA+CGG - tig0019325:184284-184303 Msa1373030:CDS 40.0%
! TGAAGATAGGCTCTGGTAGT+TGG - tig0019325:182379-182398 Msa1373030:CDS 45.0%
!! TCTGGTAGTTGGTGGGAAAA+GGG - tig0019325:182390-182409 Msa1373030:CDS 45.0%
GAAAGGGAAAATGGGGTTTC+TGG - tig0019325:182480-182499 Msa1373030:CDS 45.0%
AAGGGAAAATGGGGTTTCTG+GGG - tig0019325:182482-182501 Msa1373030:CDS 45.0%
TTATGGTGAAGCCTGGTAAG+AGG - tig0019325:182514-182533 Msa1373030:intron 45.0%
TTGACAGGAAACCTCTTACC+AGG + tig0019325:182528-182547 None:intergenic 45.0%
TGGTAAGAGGTTTCCTGTCA+AGG - tig0019325:182527-182546 Msa1373030:intron 45.0%
AGAAGATCCTTCACCTTGAC+AGG + tig0019325:182543-182562 None:intergenic 45.0%
TGTCAAGGTGAAGGATCTTC+TGG - tig0019325:182542-182561 Msa1373030:intron 45.0%
! TGAAGGATCTTCTGGCTACT+GGG - tig0019325:182550-182569 Msa1373030:intron 45.0%
CCGGGAGAAAAGGATTTACA+AGG - tig0019325:182747-182766 Msa1373030:intron 45.0%
! GTGCTTTTGTGGGAGTTGTA+AGG - tig0019325:182794-182813 Msa1373030:intron 45.0%
! GCTTTTGTGGGAGTTGTAAG+GGG - tig0019325:182796-182815 Msa1373030:intron 45.0%
AGGGGAATCAGGCAAGTAAA+TGG - tig0019325:182814-182833 Msa1373030:intron 45.0%
GGAATCAGGCAAGTAAATGG+AGG - tig0019325:182817-182836 Msa1373030:intron 45.0%
GTGTGGGTTTAGCATCTTGT+AGG - tig0019325:182863-182882 Msa1373030:intron 45.0%
TAGTGCTAGTAAACGTCCTC+CGG - tig0019325:182965-182984 Msa1373030:intron 45.0%
ATCCAACGGAAGACTTGAAC+AGG + tig0019325:183039-183058 None:intergenic 45.0%
TAAAGAGGTCCAAATGGTCC+TGG - tig0019325:183067-183086 Msa1373030:intron 45.0%
AAAGAGGTCCAAATGGTCCT+GGG - tig0019325:183068-183087 Msa1373030:intron 45.0%
TGAAATCACCCAGGACCATT+TGG + tig0019325:183079-183098 None:intergenic 45.0%
ACTGCATTGTGAAATCACCC+AGG + tig0019325:183088-183107 None:intergenic 45.0%
GTCTCTTTCAACTCCATGCA+TGG + tig0019325:183278-183297 None:intergenic 45.0%
GAGTTGAAAGAGACTTCTGC+AGG - tig0019325:183284-183303 Msa1373030:intron 45.0%
! AGCGCATCCTCTTCTTTTCT+TGG + tig0019325:183318-183337 None:intergenic 45.0%
AAAAGAAGAGGATGCGCTCT+TGG - tig0019325:183320-183339 Msa1373030:intron 45.0%
TGACTGTTTGGGAGAGCTTA+TGG - tig0019325:183929-183948 Msa1373030:intron 45.0%
AGTGTCTGTGCTGGACTAAT+TGG + tig0019325:184257-184276 None:intergenic 45.0%
ATTAGTCCAGCACAGACACT+CGG - tig0019325:184257-184276 Msa1373030:CDS 45.0%
CAGTGCATGGAACAATTGAC+GGG - tig0019325:184285-184304 Msa1373030:CDS 45.0%
! TGACGGATATATAGTCACGG+TGG - tig0019325:184316-184335 Msa1373030:CDS 45.0%
ATATATAGTCACGGTGGACC+TGG - tig0019325:184322-184341 Msa1373030:CDS 45.0%
TATATAGTCACGGTGGACCT+GGG - tig0019325:184323-184342 Msa1373030:CDS 45.0%
! TGAAGATAGGCTCTGGTAGT+TGG - tig0019325:182379-182398 Msa1373030:CDS 45.0%
!! TCTGGTAGTTGGTGGGAAAA+GGG - tig0019325:182390-182409 Msa1373030:CDS 45.0%
GAAAGGGAAAATGGGGTTTC+TGG - tig0019325:182480-182499 Msa1373030:CDS 45.0%
AAGGGAAAATGGGGTTTCTG+GGG - tig0019325:182482-182501 Msa1373030:CDS 45.0%
TTATGGTGAAGCCTGGTAAG+AGG - tig0019325:182514-182533 Msa1373030:intron 45.0%
TTGACAGGAAACCTCTTACC+AGG + tig0019325:182528-182547 None:intergenic 45.0%
TGGTAAGAGGTTTCCTGTCA+AGG - tig0019325:182527-182546 Msa1373030:intron 45.0%
AGAAGATCCTTCACCTTGAC+AGG + tig0019325:182543-182562 None:intergenic 45.0%
TGTCAAGGTGAAGGATCTTC+TGG - tig0019325:182542-182561 Msa1373030:intron 45.0%
! TGAAGGATCTTCTGGCTACT+GGG - tig0019325:182550-182569 Msa1373030:intron 45.0%
CCGGGAGAAAAGGATTTACA+AGG - tig0019325:182747-182766 Msa1373030:intron 45.0%
! GTGCTTTTGTGGGAGTTGTA+AGG - tig0019325:182794-182813 Msa1373030:intron 45.0%
! GCTTTTGTGGGAGTTGTAAG+GGG - tig0019325:182796-182815 Msa1373030:intron 45.0%
AGGGGAATCAGGCAAGTAAA+TGG - tig0019325:182814-182833 Msa1373030:intron 45.0%
GGAATCAGGCAAGTAAATGG+AGG - tig0019325:182817-182836 Msa1373030:intron 45.0%
GTGTGGGTTTAGCATCTTGT+AGG - tig0019325:182863-182882 Msa1373030:intron 45.0%
TAGTGCTAGTAAACGTCCTC+CGG - tig0019325:182965-182984 Msa1373030:intron 45.0%
ATCCAACGGAAGACTTGAAC+AGG + tig0019325:183039-183058 None:intergenic 45.0%
TAAAGAGGTCCAAATGGTCC+TGG - tig0019325:183067-183086 Msa1373030:intron 45.0%
AAAGAGGTCCAAATGGTCCT+GGG - tig0019325:183068-183087 Msa1373030:intron 45.0%
TGAAATCACCCAGGACCATT+TGG + tig0019325:183079-183098 None:intergenic 45.0%
ACTGCATTGTGAAATCACCC+AGG + tig0019325:183088-183107 None:intergenic 45.0%
GTCTCTTTCAACTCCATGCA+TGG + tig0019325:183278-183297 None:intergenic 45.0%
GAGTTGAAAGAGACTTCTGC+AGG - tig0019325:183284-183303 Msa1373030:intron 45.0%
! AGCGCATCCTCTTCTTTTCT+TGG + tig0019325:183318-183337 None:intergenic 45.0%
AAAAGAAGAGGATGCGCTCT+TGG - tig0019325:183320-183339 Msa1373030:intron 45.0%
TGACTGTTTGGGAGAGCTTA+TGG - tig0019325:183929-183948 Msa1373030:intron 45.0%
AGTGTCTGTGCTGGACTAAT+TGG + tig0019325:184257-184276 None:intergenic 45.0%
ATTAGTCCAGCACAGACACT+CGG - tig0019325:184257-184276 Msa1373030:CDS 45.0%
CAGTGCATGGAACAATTGAC+GGG - tig0019325:184285-184304 Msa1373030:CDS 45.0%
! TGACGGATATATAGTCACGG+TGG - tig0019325:184316-184335 Msa1373030:CDS 45.0%
ATATATAGTCACGGTGGACC+TGG - tig0019325:184322-184341 Msa1373030:CDS 45.0%
TATATAGTCACGGTGGACCT+GGG - tig0019325:184323-184342 Msa1373030:CDS 45.0%
! AGATAGGCTCTGGTAGTTGG+TGG - tig0019325:182382-182401 Msa1373030:CDS 50.0%
! GATAGGCTCTGGTAGTTGGT+GGG - tig0019325:182383-182402 Msa1373030:CDS 50.0%
!! CTCTGGTAGTTGGTGGGAAA+AGG - tig0019325:182389-182408 Msa1373030:CDS 50.0%
!! TTCTGGGGTTTCGCGGATTA+TGG - tig0019325:182497-182516 Msa1373030:intron 50.0%
GAGGTTTCCTGTCAAGGTGA+AGG - tig0019325:182533-182552 Msa1373030:intron 50.0%
! GTGAAGGATCTTCTGGCTAC+TGG - tig0019325:182549-182568 Msa1373030:intron 50.0%
! TCTTCTGGCTACTGGGATTC+TGG - tig0019325:182557-182576 Msa1373030:intron 50.0%
TGATGTGTAGGCGCGTAAAC+CGG - tig0019325:182728-182747 Msa1373030:intron 50.0%
TGGGAGTTGTAAGGGGAATC+AGG - tig0019325:182803-182822 Msa1373030:intron 50.0%
CAGGCAAGTAAATGGAGGGA+TGG - tig0019325:182822-182841 Msa1373030:intron 50.0%
AGGCATTCATGACATCCCGA+AGG + tig0019325:183019-183038 None:intergenic 50.0%
TGCCTGTTCAAGTCTTCCGT+TGG - tig0019325:183034-183053 Msa1373030:intron 50.0%
AGAGGATGCGCTCTTGGTTT+CGG - tig0019325:183326-183345 Msa1373030:intron 50.0%
ACACTCGGTTCTTCAGTGCA+TGG - tig0019325:184272-184291 Msa1373030:CDS 50.0%
CTTTCAGCTGTTCAGAACCC+AGG + tig0019325:184343-184362 None:intergenic 50.0%
!! CTGGGTTCTGAACAGCTGAA+AGG - tig0019325:184341-184360 Msa1373030:CDS 50.0%
! AGATAGGCTCTGGTAGTTGG+TGG - tig0019325:182382-182401 Msa1373030:CDS 50.0%
! GATAGGCTCTGGTAGTTGGT+GGG - tig0019325:182383-182402 Msa1373030:CDS 50.0%
!! CTCTGGTAGTTGGTGGGAAA+AGG - tig0019325:182389-182408 Msa1373030:CDS 50.0%
!! TTCTGGGGTTTCGCGGATTA+TGG - tig0019325:182497-182516 Msa1373030:intron 50.0%
GAGGTTTCCTGTCAAGGTGA+AGG - tig0019325:182533-182552 Msa1373030:intron 50.0%
! GTGAAGGATCTTCTGGCTAC+TGG - tig0019325:182549-182568 Msa1373030:intron 50.0%
! TCTTCTGGCTACTGGGATTC+TGG - tig0019325:182557-182576 Msa1373030:intron 50.0%
TGATGTGTAGGCGCGTAAAC+CGG - tig0019325:182728-182747 Msa1373030:intron 50.0%
TGGGAGTTGTAAGGGGAATC+AGG - tig0019325:182803-182822 Msa1373030:intron 50.0%
CAGGCAAGTAAATGGAGGGA+TGG - tig0019325:182822-182841 Msa1373030:intron 50.0%
AGGCATTCATGACATCCCGA+AGG + tig0019325:183019-183038 None:intergenic 50.0%
TGCCTGTTCAAGTCTTCCGT+TGG - tig0019325:183034-183053 Msa1373030:intron 50.0%
AGAGGATGCGCTCTTGGTTT+CGG - tig0019325:183326-183345 Msa1373030:intron 50.0%
ACACTCGGTTCTTCAGTGCA+TGG - tig0019325:184272-184291 Msa1373030:CDS 50.0%
CTTTCAGCTGTTCAGAACCC+AGG + tig0019325:184343-184362 None:intergenic 50.0%
!! CTGGGTTCTGAACAGCTGAA+AGG - tig0019325:184341-184360 Msa1373030:CDS 50.0%
!! ATGGGGTTTCTGGGGTTTCG+CGG - tig0019325:182490-182509 Msa1373030:CDS 55.0%
! TCGCGGATTATGGTGAAGCC+TGG - tig0019325:182507-182526 Msa1373030:intron 55.0%
TCTGGCTACTGGGATTCTGG+AGG - tig0019325:182560-182579 Msa1373030:intron 55.0%
CTGGCTACTGGGATTCTGGA+GGG - tig0019325:182561-182580 Msa1373030:intron 55.0%
GATGTGTAGGCGCGTAAACC+GGG - tig0019325:182729-182748 Msa1373030:intron 55.0%
GAAGAACCGAGTGTCTGTGC+TGG + tig0019325:184266-184285 None:intergenic 55.0%
!! ATGGGGTTTCTGGGGTTTCG+CGG - tig0019325:182490-182509 Msa1373030:CDS 55.0%
! TCGCGGATTATGGTGAAGCC+TGG - tig0019325:182507-182526 Msa1373030:intron 55.0%
TCTGGCTACTGGGATTCTGG+AGG - tig0019325:182560-182579 Msa1373030:intron 55.0%
CTGGCTACTGGGATTCTGGA+GGG - tig0019325:182561-182580 Msa1373030:intron 55.0%
GATGTGTAGGCGCGTAAACC+GGG - tig0019325:182729-182748 Msa1373030:intron 55.0%
GAAGAACCGAGTGTCTGTGC+TGG + tig0019325:184266-184285 None:intergenic 55.0%
GGCGCGTAAACCGGGAGAAA+AGG - tig0019325:182737-182756 Msa1373030:intron 60.0%
GGCGCGTAAACCGGGAGAAA+AGG - tig0019325:182737-182756 Msa1373030:intron 60.0%
Chromosome Type Strat End Strand Name
tig0019325 gene 182378 184382 182378 ID=Msa1373030;Name=Msa1373030
tig0019325 mRNA 182378 184382 182378 ID=Msa1373030-mRNA-1;Parent=Msa1373030;Name=Msa1373030-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0|0|1|1|1|4|0|256
tig0019325 exon 184146 184382 184146 ID=Msa1373030-mRNA-1:exon:3046;Parent=Msa1373030-mRNA-1
tig0019325 exon 183626 183830 183626 ID=Msa1373030-mRNA-1:exon:3045;Parent=Msa1373030-mRNA-1
tig0019325 exon 183338 183532 183338 ID=Msa1373030-mRNA-1:exon:3044;Parent=Msa1373030-mRNA-1
tig0019325 exon 182378 182511 182378 ID=Msa1373030-mRNA-1:exon:3043;Parent=Msa1373030-mRNA-1
tig0019325 CDS 184146 184382 184146 ID=Msa1373030-mRNA-1:cds;Parent=Msa1373030-mRNA-1
tig0019325 CDS 183626 183830 183626 ID=Msa1373030-mRNA-1:cds;Parent=Msa1373030-mRNA-1
tig0019325 CDS 183338 183532 183338 ID=Msa1373030-mRNA-1:cds;Parent=Msa1373030-mRNA-1
tig0019325 CDS 182378 182511 182378 ID=Msa1373030-mRNA-1:cds;Parent=Msa1373030-mRNA-1
Gene Sequence

>Msa1373030

ATGAAGATAGGCTCTGGTAGTTGGTGGGAAAAGGGTGAAGAAATCAAGGATAACGATGTTGTTGTTGGAGTTGATGTTGATAATGTTGCTGCTAATGTTGTTGAAAGGGAAAATGGGGTTTCTGGGGTTTCGCGGATTATGGTGAAGCCTGGTAAGAGGTTTCCTGTCAAGGTGAAGGATCTTCTGGCTACTGGGATTCTGGAGGGATTGAAAGTGAGATATGTCAAGGGACATAAGGTTGTCTCGCCGAATGTTTTTGAGTTGCATGCTGGTAGTGCTAGTAAACGTCCTCCGGATTATACTTACCTTGAGAATGGAAAACTCCTTCGGGATGTCATGAATGCCTGTTCAAGTCTTCCGTTGGATACATTGGATAAAGAGGTCCAAATGGTCCTGGGTGATTTCACAATGCAGTATTCTAATATTTGTTTCAACTGCAGAGGGTCAATTTCTGAATCTAACAAGGGTGAGTCAAAACTAGTATGCAATCCATGCATGGAGTTGAAAGAGACTTCTGCAGGAACTTCTTCCAAGAAAAGAAGAGGATGCGCTCTTGGTTTCGGATCAAAAAATAAGAGAGAAGAAGGACCTTCCGAAAAAACTACTTCTGCAGAAACTTCTTCCAAGAAAATAAGAGTTAGTCCAATTAGTCCAGCACAGACACTCGGTTCTTCAGTGCATGGAACAATTGACGGGAAATTTGATGACGGATATATAGTCACGGTGGACCTGGGTTCTGAACAGCTGAAAGGTGTCTTGTATCATGTTTGA

Protein sequence

>Msa1373030

MKIGSGSWWEKGEEIKDNDVVVGVDVDNVAANVVERENGVSGVSRIMVKPGKRFPVKVKDLLATGILEGLKVRYVKGHKVVSPNVFELHAGSASKRPPDYTYLENGKLLRDVMNACSSLPLDTLDKEVQMVLGDFTMQYSNICFNCRGSISESNKGESKLVCNPCMELKETSAGTSSKKRRGCALGFGSKNKREEGPSEKTTSAETSSKKIRVSPISPAQTLGSSVHGTIDGKFDDGYIVTVDLGSEQLKGVLYHV*