Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197130 | XP_013446004.1 | 98.077 | 416 | 5 | 2 | 1 | 415 | 1 | 414 | 0.0 | 836 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197130 | sp|Q0J035|PANK2_ORYSJ | 63.613 | 393 | 136 | 5 | 14 | 402 | 77 | 466 | 1.63e-170 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa1197130 | 0.805005 | 1.645111e-49 | -8.615850e-47 |
| Msa0076290 | Msa1197130 | 0.815311 | 9.867194e-52 | -8.615850e-47 |
| Msa0673120 | Msa1197130 | 0.801528 | 8.627634e-49 | -8.615850e-47 |
| Msa0416510 | Msa1197130 | 0.802444 | 5.593871e-49 | -8.615850e-47 |
| Msa0287840 | Msa1197130 | 0.809945 | 1.471937e-50 | -8.615850e-47 |
| Msa1197130 | Msa1249880 | 0.930069 | 2.800062e-93 | -8.615850e-47 |
| Msa0562570 | Msa1197130 | 0.818308 | 2.097128e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197130 | MtrunA17_Chr8g0365801 | 98.077 | 416 | 5 | 2 | 1 | 415 | 1 | 414 | 0.0 | 836 |
| Msa1197130 | MtrunA17_Chr3g0117581 | 60.922 | 412 | 148 | 5 | 1 | 402 | 45 | 453 | 4.93e-169 | 496 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197130 | AT4G32180.2 | 58.920 | 426 | 146 | 9 | 1 | 408 | 50 | 464 | 1.48e-164 | 482 |
| Msa1197130 | AT4G32180.3 | 58.920 | 426 | 146 | 9 | 1 | 408 | 50 | 464 | 1.48e-164 | 482 |
| Msa1197130 | AT4G32180.1 | 58.920 | 426 | 146 | 9 | 1 | 408 | 50 | 464 | 6.62e-163 | 481 |
| Msa1197130 | AT1G60440.1 | 62.183 | 394 | 132 | 3 | 19 | 412 | 4 | 380 | 2.33e-156 | 446 |
| Msa1197130 | AT1G60440.2 | 69.128 | 298 | 90 | 1 | 115 | 412 | 8 | 303 | 3.74e-132 | 382 |
| Msa1197130 | AT1G60440.3 | 55.330 | 394 | 120 | 4 | 19 | 412 | 4 | 341 | 1.95e-128 | 374 |
Find 100 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATAGGTGGAGGCACTTTC+TGG | 0.182686 | 8_1:+47386635 | Msa1197130:CDS |
| TACTTAAATGCCCTTCGTTT+TGG | 0.195161 | 8_1:+47388078 | Msa1197130:CDS |
| GATTTCTCTGAAGTATTTCT+AGG | 0.205074 | 8_1:-47385221 | None:intergenic |
| CCATATCTTCTTGTTAATAT+TGG | 0.206082 | 8_1:+47386447 | Msa1197130:CDS |
| TATCTGTTGCTGTTAATTTC+TGG | 0.211148 | 8_1:+47388163 | Msa1197130:CDS |
| TACACAAAATGAATATTATA+TGG | 0.235387 | 8_1:-47384108 | None:intergenic |
| GTTGCTGGAATTAAGTTATC+AGG | 0.258626 | 8_1:+47386796 | Msa1197130:CDS |
| ATAGATATTGGTTGACTTCC+GGG | 0.270706 | 8_1:-47385535 | None:intergenic |
| TTAATTACCTTAATAGATAT+TGG | 0.275525 | 8_1:-47385547 | None:intergenic |
| ATGCTTGTCGGAGATATTTA+TGG | 0.278415 | 8_1:+47386839 | Msa1197130:CDS |
| AAAGGCAATGTCTGATAAAA+AGG | 0.281844 | 8_1:+47387056 | Msa1197130:CDS |
| AGAATGATTTCAAATAATAT+TGG | 0.285969 | 8_1:+47387123 | Msa1197130:CDS |
| GGAGGCACTTTCTGGGGTTT+AGG | 0.287312 | 8_1:+47386643 | Msa1197130:CDS |
| CTTCAGCTTTGATGAGTTGC+TGG | 0.304425 | 8_1:+47386781 | Msa1197130:CDS |
| ACATGGCCTCAAAGAATTAT+TGG | 0.307848 | 8_1:+47388931 | Msa1197130:CDS |
| AGGAACCATCCTGTTCTTAA+AGG | 0.312390 | 8_1:+47385254 | Msa1197130:CDS |
| AAGTCAACCAATATCTATTA+AGG | 0.312782 | 8_1:+47385540 | Msa1197130:CDS |
| GATAGTGTATCCATTGTAAA+AGG | 0.314727 | 8_1:-47388144 | None:intergenic |
| CTTTAATGAAGATTTGTAAT+AGG | 0.314760 | 8_1:+47389162 | Msa1197130:three_prime_UTR |
| AATAGATATTGGTTGACTTC+CGG | 0.321055 | 8_1:-47385536 | None:intergenic |
| TTGCGGCATGAAGGATTTCT+TGG | 0.322380 | 8_1:+47388878 | Msa1197130:CDS |
| CCGAGAAGCCTATACCTATA+TGG | 0.323228 | 8_1:+47386380 | Msa1197130:CDS |
| ACATGAGTTGTTGATGGATT+AGG | 0.328971 | 8_1:-47384236 | None:intergenic |
| GATGGATTAGGATCGGAATT+TGG | 0.330679 | 8_1:-47384224 | None:intergenic |
| TATCATCTTGCTCTCGATAT+TGG | 0.342399 | 8_1:+47384260 | Msa1197130:CDS |
| TATCCCTAGCCTTTCTTTGA+AGG | 0.348131 | 8_1:-47386011 | None:intergenic |
| ACTGCAATAGCATCTAGTTT+TGG | 0.351488 | 8_1:+47387033 | Msa1197130:CDS |
| TTGATCACCCATATAGGTAT+AGG | 0.360507 | 8_1:-47386388 | None:intergenic |
| CCAATATTAACAAGAAGATA+TGG | 0.371904 | 8_1:-47386447 | None:intergenic |
| TAACTTGGTCGGACTTTGTT+GGG | 0.379531 | 8_1:-47388966 | None:intergenic |
| CCATATAGGTATAGGCTTCT+CGG | 0.381859 | 8_1:-47386380 | None:intergenic |
| TTGAGCTTTCCTTTAAGAAC+AGG | 0.385427 | 8_1:-47385263 | None:intergenic |
| CTTCTTGTTAATATTGGATC+TGG | 0.386128 | 8_1:+47386453 | Msa1197130:CDS |
| TTGCCTTTGATCACCCATAT+AGG | 0.387321 | 8_1:-47386394 | None:intergenic |
| TATAGGTGGAGGCACTTTCT+GGG | 0.396912 | 8_1:+47386636 | Msa1197130:CDS |
| GGAAAGTTTGAGCGAGTTAG+TGG | 0.402390 | 8_1:+47386607 | Msa1197130:CDS |
| TCTTGACAAGGAAGATGAAA+TGG | 0.404418 | 8_1:+47386036 | Msa1197130:CDS |
| TTCATATAGGTGGAAGGAAA+TGG | 0.417291 | 8_1:+47386586 | Msa1197130:intron |
| GCTTGACCAATAATTCTTTG+AGG | 0.417859 | 8_1:-47388937 | None:intergenic |
| TGATAAACATGAGTTGTTGA+TGG | 0.420275 | 8_1:-47384242 | None:intergenic |
| TGCGGCTTAGATGATGTTAT+TGG | 0.423231 | 8_1:+47389066 | Msa1197130:exon |
| ATCCCTAGCCTTTCTTTGAA+GGG | 0.426273 | 8_1:-47386010 | None:intergenic |
| AGATTACAGACCCGAAGATA+TGG | 0.429533 | 8_1:+47387086 | Msa1197130:CDS |
| TATTATATGGGTTGGTAGGT+TGG | 0.441294 | 8_1:-47384095 | None:intergenic |
| TTACAAATCTTCATTAAAGA+AGG | 0.443378 | 8_1:-47389158 | None:intergenic |
| CAACTAGATGGTGAATTGTT+TGG | 0.453366 | 8_1:+47389016 | Msa1197130:CDS |
| TGAATATTATATGGGTTGGT+AGG | 0.460283 | 8_1:-47384099 | None:intergenic |
| GAAATGGATTGTCTTGTTGC+AGG | 0.461214 | 8_1:+47386052 | Msa1197130:CDS |
| ATCAACAGCGAAAGTTAACT+TGG | 0.461877 | 8_1:-47388981 | None:intergenic |
| AAGAGATCGAGCCATATCTT+CGG | 0.465688 | 8_1:-47387097 | None:intergenic |
| CGAGTTAGTGGAACGAGTAT+AGG | 0.467173 | 8_1:+47386619 | Msa1197130:CDS |
| ACCTCCAGGATGAAGTTTCA+TGG | 0.470308 | 8_1:-47385339 | None:intergenic |
| TTAACTTGGTCGGACTTTGT+TGG | 0.484620 | 8_1:-47388967 | None:intergenic |
| ATGCAGACCCCTTCAAAGAA+AGG | 0.486872 | 8_1:+47386002 | Msa1197130:CDS |
| CGAGAAGCCTATACCTATAT+GGG | 0.487207 | 8_1:+47386381 | Msa1197130:CDS |
| ACACAAAATGAATATTATAT+GGG | 0.488879 | 8_1:-47384107 | None:intergenic |
| AGAGATCGAGCCATATCTTC+GGG | 0.493566 | 8_1:-47387096 | None:intergenic |
| TCCCTAGCCTTTCTTTGAAG+GGG | 0.495185 | 8_1:-47386009 | None:intergenic |
| ACCATTGTTGTGAAGGCCAC+AGG | 0.503696 | 8_1:+47385962 | Msa1197130:intron |
| AATACTTCAGAGAAATCAAA+AGG | 0.505429 | 8_1:+47385227 | Msa1197130:CDS |
| CATCTTGCTCTCGATATTGG+AGG | 0.519040 | 8_1:+47384263 | Msa1197130:CDS |
| GAAGGATTTCTTGGAGCTGT+AGG | 0.521139 | 8_1:+47388887 | Msa1197130:CDS |
| CGGAGATATTTATGGTGGAA+TGG | 0.522518 | 8_1:+47386847 | Msa1197130:CDS |
| GATTTCAAATAATATTGGAC+AGG | 0.523645 | 8_1:+47387128 | Msa1197130:CDS |
| ATAGGTGGAGGCACTTTCTG+GGG | 0.526740 | 8_1:+47386637 | Msa1197130:CDS |
| GTTGTGAAGGCCACAGGTGG+TGG | 0.533246 | 8_1:+47385968 | Msa1197130:intron |
| GCAATGTTCTTGCGGCATGA+AGG | 0.537851 | 8_1:+47388869 | Msa1197130:CDS |
| AAGATGCATGGTCAACTAGA+TGG | 0.539599 | 8_1:+47389004 | Msa1197130:CDS |
| AAAATGAATATTATATGGGT+TGG | 0.544613 | 8_1:-47384103 | None:intergenic |
| AAAGAGGTAGATATGCTTGT+CGG | 0.545876 | 8_1:+47386827 | Msa1197130:CDS |
| TTTCAATTCATATAGGTGGA+AGG | 0.547834 | 8_1:+47386580 | Msa1197130:intron |
| ATCTGGTGTTAGCATGATCA+AGG | 0.553570 | 8_1:+47386470 | Msa1197130:CDS |
| ACCCCTTCAAAGAAAGGCTA+GGG | 0.559074 | 8_1:+47386008 | Msa1197130:CDS |
| TTCGCTGTTGATAAGATGCA+TGG | 0.566331 | 8_1:+47388992 | Msa1197130:CDS |
| AGAATTATTGGTCAAGCAAG+AGG | 0.566501 | 8_1:+47388943 | Msa1197130:CDS |
| TTGCTGGAATTAAGTTATCA+GGG | 0.566970 | 8_1:+47386797 | Msa1197130:CDS |
| AGTTGTTGATGGATTAGGAT+CGG | 0.569966 | 8_1:-47384231 | None:intergenic |
| TCCTCTTCAGCCCAAAACGA+AGG | 0.571979 | 8_1:-47388089 | None:intergenic |
| AAGACCATGAAACTTCATCC+TGG | 0.584192 | 8_1:+47385335 | Msa1197130:CDS |
| GACCCCTTCAAAGAAAGGCT+AGG | 0.589090 | 8_1:+47386007 | Msa1197130:CDS |
| CAGAGAAATCAAAAGGCAGA+AGG | 0.591700 | 8_1:+47385234 | Msa1197130:CDS |
| CTTGTCGGAGATATTTATGG+TGG | 0.598989 | 8_1:+47386842 | Msa1197130:CDS |
| AGTCGGCAGCAAGAAAATCC+CGG | 0.600104 | 8_1:+47385517 | Msa1197130:CDS |
| TGGTGATGAATTCAGGTAGT+CGG | 0.600307 | 8_1:+47385500 | Msa1197130:intron |
| ATACCTATATGGGTGATCAA+AGG | 0.601771 | 8_1:+47386391 | Msa1197130:CDS |
| CCTCTTCAGCCCAAAACGAA+GGG | 0.612270 | 8_1:-47388088 | None:intergenic |
| GTTAGTGGAACGAGTATAGG+TGG | 0.612326 | 8_1:+47386622 | Msa1197130:CDS |
| ATGTTTATCAGAACTCATGA+AGG | 0.615934 | 8_1:-47388912 | None:intergenic |
| AGGCGAAAGCAATGTTCTTG+CGG | 0.618547 | 8_1:+47388861 | Msa1197130:CDS |
| ACAGCGAAAGTTAACTTGGT+CGG | 0.621202 | 8_1:-47388977 | None:intergenic |
| TGGTGGAATGGACTATGCAA+AGG | 0.622264 | 8_1:+47386859 | Msa1197130:CDS |
| GCTTTCCTTTAAGAACAGGA+TGG | 0.628821 | 8_1:-47385259 | None:intergenic |
| TTTGTATGAACCACCACCTG+TGG | 0.635445 | 8_1:-47385978 | None:intergenic |
| GCTAGGGATAAATCTTGACA+AGG | 0.666525 | 8_1:+47386024 | Msa1197130:CDS |
| AGTGGAACGAGTATAGGTGG+AGG | 0.675883 | 8_1:+47386625 | Msa1197130:CDS |
| TTATCAGGGCAACAACAAAG+AGG | 0.690955 | 8_1:+47386811 | Msa1197130:CDS |
| ACCATGAAACTTCATCCTGG+AGG | 0.702347 | 8_1:+47385338 | Msa1197130:CDS |
| TATTGAGTGTAGTGTGTATG+CGG | 0.711094 | 8_1:+47389048 | Msa1197130:CDS |
| ATTGTTGTGAAGGCCACAGG+TGG | 0.737174 | 8_1:+47385965 | Msa1197130:intron |
| TTCATGAGTTCTGATAAACA+TGG | 0.742858 | 8_1:+47388914 | Msa1197130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTGATGTTTAAATAT+GGG | - | chr8_1:47386154-47386173 | None:intergenic | 10.0% |
| !! | ATTTATTTGATGTTTAAATA+TGG | - | chr8_1:47386155-47386174 | None:intergenic | 10.0% |
| !! | AATATTAAAAAATTCAGAAT+TGG | - | chr8_1:47386532-47386551 | None:intergenic | 10.0% |
| !! | AATTTAAAAAAAAGATTTAG+TGG | + | chr8_1:47387399-47387418 | Msa1197130:intron | 10.0% |
| !! | ACACAAAATGAATATTATAT+GGG | - | chr8_1:47384110-47384129 | None:intergenic | 15.0% |
| !! | TACACAAAATGAATATTATA+TGG | - | chr8_1:47384111-47384130 | None:intergenic | 15.0% |
| !! | AAGAAGAAAAATAAACAAAA+TGG | + | chr8_1:47384178-47384197 | Msa1197130:exon | 15.0% |
| !! | TAATAAACGTTTAAATAAGT+TGG | - | chr8_1:47384488-47384507 | None:intergenic | 15.0% |
| !!! | AATTAGAATTATGTTTTGTT+AGG | + | chr8_1:47384999-47385018 | Msa1197130:intron | 15.0% |
| !! | TTAATTACCTTAATAGATAT+TGG | - | chr8_1:47385550-47385569 | None:intergenic | 15.0% |
| !! | AGAATGATTTCAAATAATAT+TGG | + | chr8_1:47387123-47387142 | Msa1197130:CDS | 15.0% |
| !! | ACAATAAATATATAAATAGG+AGG | - | chr8_1:47387979-47387998 | None:intergenic | 15.0% |
| !! | TGCACAATAAATATATAAAT+AGG | - | chr8_1:47387982-47388001 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGTTGAACA+TGG | - | chr8_1:47388466-47388485 | None:intergenic | 15.0% |
| !!! | TGAATCTTTGTTTATTTTTT+AGG | + | chr8_1:47388828-47388847 | Msa1197130:intron | 15.0% |
| !! | AAAATGAATATTATATGGGT+TGG | - | chr8_1:47384106-47384125 | None:intergenic | 20.0% |
| !! | ATTACTACTAACAGTAAAAA+TGG | - | chr8_1:47384329-47384348 | None:intergenic | 20.0% |
| !! | ATCAAAATTGATCAGAATAT+TGG | - | chr8_1:47384408-47384427 | None:intergenic | 20.0% |
| !!! | AATATTCTGATCAATTTTGA+TGG | + | chr8_1:47384407-47384426 | Msa1197130:intron | 20.0% |
| !! | TAATAGGATAATCCAATATA+AGG | + | chr8_1:47384796-47384815 | Msa1197130:intron | 20.0% |
| !! | AAACATAATTCTAATTTGAG+AGG | - | chr8_1:47384995-47385014 | None:intergenic | 20.0% |
| !! | TAATTCTTAGAATTTGCATT+GGG | - | chr8_1:47385035-47385054 | None:intergenic | 20.0% |
| !! | TTAATGAGTACGATATTATT+TGG | + | chr8_1:47385084-47385103 | Msa1197130:intron | 20.0% |
| !! | TAATGAGTACGATATTATTT+GGG | + | chr8_1:47385085-47385104 | Msa1197130:intron | 20.0% |
| !! | AATATTTGATTACAGTGTAT+GGG | - | chr8_1:47385421-47385440 | None:intergenic | 20.0% |
| !!! | ATACATTGCATTTTATTGAA+TGG | - | chr8_1:47385891-47385910 | None:intergenic | 20.0% |
| !! | TTAAACATCAAATAAATGAC+TGG | + | chr8_1:47386158-47386177 | Msa1197130:intron | 20.0% |
| !! | AAGATTATTTATTGAACGAA+TGG | - | chr8_1:47386202-47386221 | None:intergenic | 20.0% |
| !!! | AACATATATGCTAAACTTTT+GGG | - | chr8_1:47386231-47386250 | None:intergenic | 20.0% |
| !!! | TCAATGTTTTCAATTCATAT+AGG | + | chr8_1:47386573-47386592 | Msa1197130:intron | 20.0% |
| !!! | TTTTTAGGACATATTCATTA+TGG | + | chr8_1:47386709-47386728 | Msa1197130:intron | 20.0% |
| !!! | TTTTAGGACATATTCATTAT+GGG | + | chr8_1:47386710-47386729 | Msa1197130:intron | 20.0% |
| !! | ATTGTATCATCATATTAATC+AGG | - | chr8_1:47386914-47386933 | None:intergenic | 20.0% |
| !!! | ATTACTCTAAACGTTTTAAA+TGG | + | chr8_1:47386932-47386951 | Msa1197130:intron | 20.0% |
| !! | AAAAAATAAAACCAAATTGC+AGG | - | chr8_1:47387283-47387302 | None:intergenic | 20.0% |
| !! | ATACAGAGAAGAAAAAATTA+GGG | - | chr8_1:47387365-47387384 | None:intergenic | 20.0% |
| !! | AATACAGAGAAGAAAAAATT+AGG | - | chr8_1:47387366-47387385 | None:intergenic | 20.0% |
| !!! | TTTTATTAGCAAATCTTCTT+GGG | + | chr8_1:47387639-47387658 | Msa1197130:intron | 20.0% |
| !! | TTGTTTATTAATCCTATACT+AGG | + | chr8_1:47387668-47387687 | Msa1197130:intron | 20.0% |
| !! | CATTAAAATTGAACAGAAAA+TGG | + | chr8_1:47387855-47387874 | Msa1197130:intron | 20.0% |
| !!! | AATATTTATGTCACTTTAAG+CGG | + | chr8_1:47388001-47388020 | Msa1197130:intron | 20.0% |
| !! | AATCTCAAATGAGTTATTAT+TGG | - | chr8_1:47388283-47388302 | None:intergenic | 20.0% |
| !!! | TTTTTGATTAAAATCATGTC+AGG | - | chr8_1:47388796-47388815 | None:intergenic | 20.0% |
| !!! | TGTTTATTTTTTAGGTCTAA+AGG | + | chr8_1:47388836-47388855 | Msa1197130:intron | 20.0% |
| !! | TTACAAATCTTCATTAAAGA+AGG | - | chr8_1:47389161-47389180 | None:intergenic | 20.0% |
| !! | CTTTAATGAAGATTTGTAAT+AGG | + | chr8_1:47389162-47389181 | Msa1197130:three_prime_UTR | 20.0% |
| !!! | CTATTTTTCTATTACATTTC+TGG | - | chr8_1:47389190-47389209 | None:intergenic | 20.0% |
| !!! | TTTTCATTGATATAAACAAG+TGG | - | chr8_1:47389216-47389235 | None:intergenic | 20.0% |
| ! | TTGATCAGAATATTGGAAAA+GGG | - | chr8_1:47384401-47384420 | None:intergenic | 25.0% |
| ! | ATTGATCAGAATATTGGAAA+AGG | - | chr8_1:47384402-47384421 | None:intergenic | 25.0% |
| !!! | TTTAGAATTAAGCTGCTTTT+CGG | + | chr8_1:47384459-47384478 | Msa1197130:intron | 25.0% |
| ! | ACAAGCCAAAAAATAACTAA+AGG | + | chr8_1:47384717-47384736 | Msa1197130:intron | 25.0% |
| !!! | CTATGCCTTTAGTTATTTTT+TGG | - | chr8_1:47384725-47384744 | None:intergenic | 25.0% |
| !! | CAAAAAATAACTAAAGGCAT+AGG | + | chr8_1:47384723-47384742 | Msa1197130:intron | 25.0% |
| ! | TACACAAACACTTGTATAAT+AGG | + | chr8_1:47384780-47384799 | Msa1197130:intron | 25.0% |
| ! | GTAATTCTTAGAATTTGCAT+TGG | - | chr8_1:47385036-47385055 | None:intergenic | 25.0% |
| ! | TAATAATGTTCTCTATCTGT+TGG | + | chr8_1:47385120-47385139 | Msa1197130:intron | 25.0% |
| !! | AAAAGATGATGATCATTTTG+TGG | + | chr8_1:47385178-47385197 | Msa1197130:CDS | 25.0% |
| ! | AATACTTCAGAGAAATCAAA+AGG | + | chr8_1:47385227-47385246 | Msa1197130:CDS | 25.0% |
| ! | GAATATTTGATTACAGTGTA+TGG | - | chr8_1:47385422-47385441 | None:intergenic | 25.0% |
| ! | TTACGTCTATTAATTGTAAC+TGG | + | chr8_1:47385480-47385499 | Msa1197130:intron | 25.0% |
| ! | AAGTCAACCAATATCTATTA+AGG | + | chr8_1:47385540-47385559 | Msa1197130:CDS | 25.0% |
| !! | TTGATTTTTACTAAGCTTCT+AGG | - | chr8_1:47385773-47385792 | None:intergenic | 25.0% |
| ! | AGCATAATTAGTATGTTAGT+AGG | - | chr8_1:47386104-47386123 | None:intergenic | 25.0% |
| !! | CAACATATATGCTAAACTTT+TGG | - | chr8_1:47386232-47386251 | None:intergenic | 25.0% |
| !!! | TACCACATTGATTAGTTTTA+TGG | + | chr8_1:47386255-47386274 | Msa1197130:intron | 25.0% |
| ! | CCAATATTAACAAGAAGATA+TGG | - | chr8_1:47386450-47386469 | None:intergenic | 25.0% |
| ! | CCATATCTTCTTGTTAATAT+TGG | + | chr8_1:47386447-47386466 | Msa1197130:CDS | 25.0% |
| !! | ATGTTTTCAATTCATATAGG+TGG | + | chr8_1:47386576-47386595 | Msa1197130:intron | 25.0% |
| ! | GATTTCAAATAATATTGGAC+AGG | + | chr8_1:47387128-47387147 | Msa1197130:CDS | 25.0% |
| ! | CACTAGATACATTATACAAA+TGG | - | chr8_1:47387232-47387251 | None:intergenic | 25.0% |
| ! | GTACCTTTCTATGTTTATAA+TGG | + | chr8_1:47387318-47387337 | Msa1197130:intron | 25.0% |
| ! | CAACCATTATAAACATAGAA+AGG | - | chr8_1:47387324-47387343 | None:intergenic | 25.0% |
| ! | CTTTCTATGTTTATAATGGT+TGG | + | chr8_1:47387322-47387341 | Msa1197130:intron | 25.0% |
| !! | TAACATGCAAAGTATCATTT+AGG | - | chr8_1:47387457-47387476 | None:intergenic | 25.0% |
| !! | TGTTATTGATAGTTGTTTGA+TGG | + | chr8_1:47387472-47387491 | Msa1197130:intron | 25.0% |
| ! | TTATGTTAGATATTAGCGTT+TGG | + | chr8_1:47387609-47387628 | Msa1197130:intron | 25.0% |
| !!! | GTTTTATTAGCAAATCTTCT+TGG | + | chr8_1:47387638-47387657 | Msa1197130:intron | 25.0% |
| ! | AAAATTAGAATTCTGTCCAA+TGG | + | chr8_1:47387878-47387897 | Msa1197130:intron | 25.0% |
| ! | TAAGAATTTAACTCTGCAAT+TGG | - | chr8_1:47387945-47387964 | None:intergenic | 25.0% |
| !!! | ATATTTATGTCACTTTAAGC+GGG | + | chr8_1:47388002-47388021 | Msa1197130:intron | 25.0% |
| !! | AACTAATATGGATTATGTTG+TGG | + | chr8_1:47388237-47388256 | Msa1197130:intron | 25.0% |
| !! | ACTAATATGGATTATGTTGT+GGG | + | chr8_1:47388238-47388257 | Msa1197130:intron | 25.0% |
| !! | AGTTTTTGTGAATGTTGTAA+GGG | - | chr8_1:47388314-47388333 | None:intergenic | 25.0% |
| !! | AAGTTTTTGTGAATGTTGTA+AGG | - | chr8_1:47388315-47388334 | None:intergenic | 25.0% |
| !! | ACAACATTCACAAAAACTTT+TGG | + | chr8_1:47388316-47388335 | Msa1197130:intron | 25.0% |
| !!! | ACAAAAACTTTTGGTTCTAT+AGG | + | chr8_1:47388325-47388344 | Msa1197130:intron | 25.0% |
| !! | ATGTTCAACTAGTATTGTTT+TGG | - | chr8_1:47388352-47388371 | None:intergenic | 25.0% |
| !! | TGAATATTATATGGGTTGGT+AGG | - | chr8_1:47384102-47384121 | None:intergenic | 30.0% |
| TGATAAACATGAGTTGTTGA+TGG | - | chr8_1:47384245-47384264 | None:intergenic | 30.0% | |
| !! | TGATCAATTTTGATGGAGAT+TGG | + | chr8_1:47384414-47384433 | Msa1197130:intron | 30.0% |
| TTCAACTAGCATTTGAACTA+AGG | - | chr8_1:47384574-47384593 | None:intergenic | 30.0% | |
| ATGCTAGTTGAAACAATCAT+TGG | + | chr8_1:47384582-47384601 | Msa1197130:intron | 30.0% | |
| ! | AGCTTGTTTACACCTTATAT+TGG | - | chr8_1:47384811-47384830 | None:intergenic | 30.0% |
| ! | CTTGGTAATTTCTCAACAAT+AGG | + | chr8_1:47384845-47384864 | Msa1197130:intron | 30.0% |
| ! | AAAATGATTTGTAGCATCTC+TGG | + | chr8_1:47384908-47384927 | Msa1197130:intron | 30.0% |
| ! | ACGATATTATTTGGGTTTCT+TGG | + | chr8_1:47385093-47385112 | Msa1197130:intron | 30.0% |
| !! | GATTTCTCTGAAGTATTTCT+AGG | - | chr8_1:47385224-47385243 | None:intergenic | 30.0% |
| ! | AATAGATATTGGTTGACTTC+CGG | - | chr8_1:47385539-47385558 | None:intergenic | 30.0% |
| ATAAGGGAAACAGAAACAAA+TGG | - | chr8_1:47385605-47385624 | None:intergenic | 30.0% | |
| ! | ATGTTTAGTATTGAAGCACT+TGG | + | chr8_1:47385909-47385928 | Msa1197130:intron | 30.0% |
| AATGAAAACCATTGTTGTGA+AGG | + | chr8_1:47385955-47385974 | Msa1197130:intron | 30.0% | |
| CACAAACAACTACACTATTA+TGG | - | chr8_1:47386281-47386300 | None:intergenic | 30.0% | |
| ! | AATTCTCAAAGTGCTTAAGA+AGG | - | chr8_1:47386308-47386327 | None:intergenic | 30.0% |
| ! | TGTCTTGTTCTTCTTTCTAT+AGG | + | chr8_1:47386350-47386369 | Msa1197130:intron | 30.0% |
| CTTCTTGTTAATATTGGATC+TGG | + | chr8_1:47386453-47386472 | Msa1197130:CDS | 30.0% | |
| TTTCAATTCATATAGGTGGA+AGG | + | chr8_1:47386580-47386599 | Msa1197130:intron | 30.0% | |
| TTGCTGGAATTAAGTTATCA+GGG | + | chr8_1:47386797-47386816 | Msa1197130:CDS | 30.0% | |
| ATGGAGATCAACATTATCTT+AGG | + | chr8_1:47386951-47386970 | Msa1197130:intron | 30.0% | |
| TGGAGATCAACATTATCTTA+GGG | + | chr8_1:47386952-47386971 | Msa1197130:intron | 30.0% | |
| AACATTATCTTAGGGCTATT+CGG | + | chr8_1:47386960-47386979 | Msa1197130:intron | 30.0% | |
| TTCTTTCATCGATAACAGAT+TGG | + | chr8_1:47387000-47387019 | Msa1197130:intron | 30.0% | |
| !!! | AATAGCATCTAGTTTTGGAA+AGG | + | chr8_1:47387038-47387057 | Msa1197130:CDS | 30.0% |
| AAAGGCAATGTCTGATAAAA+AGG | + | chr8_1:47387056-47387075 | Msa1197130:CDS | 30.0% | |
| CTTAGTCGCTAAATAAAAGA+AGG | + | chr8_1:47387428-47387447 | Msa1197130:intron | 30.0% | |
| ! | AGCTTTTACATACATATGCA+TGG | + | chr8_1:47387586-47387605 | Msa1197130:intron | 30.0% |
| ! | GTTTTCATTATGCAGATGTT+AGG | - | chr8_1:47387750-47387769 | None:intergenic | 30.0% |
| CTGTTATGAAGCGAATAAAA+AGG | + | chr8_1:47387790-47387809 | Msa1197130:intron | 30.0% | |
| ATGAAGCGAATAAAAAGGAA+TGG | + | chr8_1:47387795-47387814 | Msa1197130:intron | 30.0% | |
| ! | TTTAAGCGGGAAATGAATTT+TGG | + | chr8_1:47388015-47388034 | Msa1197130:intron | 30.0% |
| !!! | TTGGTGGATTTTTTATTCAG+AGG | + | chr8_1:47388118-47388137 | Msa1197130:CDS | 30.0% |
| GATAGTGTATCCATTGTAAA+AGG | - | chr8_1:47388147-47388166 | None:intergenic | 30.0% | |
| ! | TATCTGTTGCTGTTAATTTC+TGG | + | chr8_1:47388163-47388182 | Msa1197130:CDS | 30.0% |
| ! | TTAGTTATGAAGCACCAAAT+TGG | - | chr8_1:47388223-47388242 | None:intergenic | 30.0% |
| ! | TTGGTGCTTCATAACTAATA+TGG | + | chr8_1:47388225-47388244 | Msa1197130:intron | 30.0% |
| !! | ACAATTTTAGCACATTCCTA+AGG | + | chr8_1:47388631-47388650 | Msa1197130:intron | 30.0% |
| !! | CAATTTTAGCACATTCCTAA+GGG | + | chr8_1:47388632-47388651 | Msa1197130:intron | 30.0% |
| TAATGCATGGAAAGTTTGAT+AGG | + | chr8_1:47388737-47388756 | Msa1197130:intron | 30.0% | |
| !!! | ATTTTTTAGGTCTAAAGGTG+AGG | + | chr8_1:47388841-47388860 | Msa1197130:intron | 30.0% |
| ATGTTTATCAGAACTCATGA+AGG | - | chr8_1:47388915-47388934 | None:intergenic | 30.0% | |
| ! | TTCATGAGTTCTGATAAACA+TGG | + | chr8_1:47388914-47388933 | Msa1197130:CDS | 30.0% |
| !! | TATTATATGGGTTGGTAGGT+TGG | - | chr8_1:47384098-47384117 | None:intergenic | 35.0% |
| !! | AGTTGTTGATGGATTAGGAT+CGG | - | chr8_1:47384234-47384253 | None:intergenic | 35.0% |
| !! | ACATGAGTTGTTGATGGATT+AGG | - | chr8_1:47384239-47384258 | None:intergenic | 35.0% |
| TATCATCTTGCTCTCGATAT+TGG | + | chr8_1:47384260-47384279 | Msa1197130:CDS | 35.0% | |
| !! | TCAATTTTGATGGAGATTGG+TGG | + | chr8_1:47384417-47384436 | Msa1197130:intron | 35.0% |
| GCATTTGAACTAAGGTTCTA+CGG | - | chr8_1:47384566-47384585 | None:intergenic | 35.0% | |
| AATCTATACTAGTGCGCTTA+CGG | + | chr8_1:47384692-47384711 | Msa1197130:intron | 35.0% | |
| ! | TACAATGTAAAGTGTCTGTC+TGG | + | chr8_1:47385058-47385077 | Msa1197130:intron | 35.0% |
| ! | TTCTCTATCTGTTGGTTGAT+AGG | + | chr8_1:47385128-47385147 | Msa1197130:intron | 35.0% |
| ! | GATGATGATCATTTTGTGGA+CGG | + | chr8_1:47385182-47385201 | Msa1197130:CDS | 35.0% |
| ! | TTGAGCTTTCCTTTAAGAAC+AGG | - | chr8_1:47385266-47385285 | None:intergenic | 35.0% |
| GACAAACACTATCAAGTATC+AGG | - | chr8_1:47385399-47385418 | None:intergenic | 35.0% | |
| GCAGAACAGTAATAAGAATG+TGG | - | chr8_1:47385457-47385476 | None:intergenic | 35.0% | |
| ! | TTGTAACTGGTGATGAATTC+AGG | + | chr8_1:47385493-47385512 | Msa1197130:intron | 35.0% |
| ! | ATAGATATTGGTTGACTTCC+GGG | - | chr8_1:47385538-47385557 | None:intergenic | 35.0% |
| GGACACAAATTCAATAGCTA+AGG | - | chr8_1:47385731-47385750 | None:intergenic | 35.0% | |
| TAGCTATTGAATTTGTGTCC+TGG | + | chr8_1:47385731-47385750 | Msa1197130:intron | 35.0% | |
| TCTTGACAAGGAAGATGAAA+TGG | + | chr8_1:47386036-47386055 | Msa1197130:CDS | 35.0% | |
| TTGAACGAATGGCAGAAAAA+TGG | - | chr8_1:47386191-47386210 | None:intergenic | 35.0% | |
| GGCCATAAAACTAATCAATG+TGG | - | chr8_1:47386260-47386279 | None:intergenic | 35.0% | |
| ! | CTTTGAGAATTTCGCAATAC+AGG | + | chr8_1:47386317-47386336 | Msa1197130:intron | 35.0% |
| TTGATCACCCATATAGGTAT+AGG | - | chr8_1:47386391-47386410 | None:intergenic | 35.0% | |
| ATACCTATATGGGTGATCAA+AGG | + | chr8_1:47386391-47386410 | Msa1197130:CDS | 35.0% | |
| TTCATATAGGTGGAAGGAAA+TGG | + | chr8_1:47386586-47386605 | Msa1197130:intron | 35.0% | |
| !! | AGCTTTTAACTCAATGCAAG+AGG | + | chr8_1:47386668-47386687 | Msa1197130:CDS | 35.0% |
| GTTAACATCAATGCACTTTG+TGG | + | chr8_1:47386752-47386771 | Msa1197130:intron | 35.0% | |
| GTTGCTGGAATTAAGTTATC+AGG | + | chr8_1:47386796-47386815 | Msa1197130:CDS | 35.0% | |
| AAAGAGGTAGATATGCTTGT+CGG | + | chr8_1:47386827-47386846 | Msa1197130:CDS | 35.0% | |
| ATGCTTGTCGGAGATATTTA+TGG | + | chr8_1:47386839-47386858 | Msa1197130:CDS | 35.0% | |
| !! | ACTGCAATAGCATCTAGTTT+TGG | + | chr8_1:47387033-47387052 | Msa1197130:CDS | 35.0% |
| AGAATATTGTTGTGTGCACA+AGG | + | chr8_1:47387502-47387521 | Msa1197130:intron | 35.0% | |
| GAATATTGTTGTGTGCACAA+GGG | + | chr8_1:47387503-47387522 | Msa1197130:intron | 35.0% | |
| CTACTGAAATCAGTGCAAAA+TGG | - | chr8_1:47387539-47387558 | None:intergenic | 35.0% | |
| !!! | CATTTTGCACTGATTTCAGT+AGG | + | chr8_1:47387537-47387556 | Msa1197130:intron | 35.0% |
| GGCAGAGTTAAATATGATTG+TGG | + | chr8_1:47387558-47387577 | Msa1197130:intron | 35.0% | |
| ! | CTATACTAGGTGTCAGTTTT+CGG | + | chr8_1:47387681-47387700 | Msa1197130:intron | 35.0% |
| ATGTTAGGTTAGAGAATGGT+AGG | - | chr8_1:47387735-47387754 | None:intergenic | 35.0% | |
| ! | TACTTAAATGCCCTTCGTTT+TGG | + | chr8_1:47388078-47388097 | Msa1197130:CDS | 35.0% |
| ! | ACTTAAATGCCCTTCGTTTT+GGG | + | chr8_1:47388079-47388098 | Msa1197130:CDS | 35.0% |
| !!! | CTGAAGAGGATATTTTTTGG+TGG | + | chr8_1:47388102-47388121 | Msa1197130:CDS | 35.0% |
| TGAACACAAAAGATAGCCTT+CGG | + | chr8_1:47388384-47388403 | Msa1197130:intron | 35.0% | |
| !! | CTCTCATTTGCTATAATGCA+TGG | + | chr8_1:47388724-47388743 | Msa1197130:intron | 35.0% |
| ACATGGCCTCAAAGAATTAT+TGG | + | chr8_1:47388931-47388950 | Msa1197130:CDS | 35.0% | |
| GCTTGACCAATAATTCTTTG+AGG | - | chr8_1:47388940-47388959 | None:intergenic | 35.0% | |
| AGAATTATTGGTCAAGCAAG+AGG | + | chr8_1:47388943-47388962 | Msa1197130:CDS | 35.0% | |
| ATCAACAGCGAAAGTTAACT+TGG | - | chr8_1:47388984-47389003 | None:intergenic | 35.0% | |
| CAACTAGATGGTGAATTGTT+TGG | + | chr8_1:47389016-47389035 | Msa1197130:CDS | 35.0% | |
| TATTGAGTGTAGTGTGTATG+CGG | + | chr8_1:47389048-47389067 | Msa1197130:CDS | 35.0% | |
| !! | GATGGATTAGGATCGGAATT+TGG | - | chr8_1:47384227-47384246 | None:intergenic | 40.0% |
| !! | GCTATTTTCGTAAGCTCTCT+CGG | + | chr8_1:47384752-47384771 | Msa1197130:intron | 40.0% |
| AGCTCTTTCAAATGCACTCT+TGG | + | chr8_1:47384827-47384846 | Msa1197130:intron | 40.0% | |
| CTAGATTGAGATAGTCTGCA+AGG | - | chr8_1:47384956-47384975 | None:intergenic | 40.0% | |
| CAGACTATCTCAATCTAGTG+AGG | + | chr8_1:47384958-47384977 | Msa1197130:intron | 40.0% | |
| CAGAGAAATCAAAAGGCAGA+AGG | + | chr8_1:47385234-47385253 | Msa1197130:CDS | 40.0% | |
| AGGAACCATCCTGTTCTTAA+AGG | + | chr8_1:47385254-47385273 | Msa1197130:CDS | 40.0% | |
| ! | GCTTTCCTTTAAGAACAGGA+TGG | - | chr8_1:47385262-47385281 | None:intergenic | 40.0% |
| AAGACCATGAAACTTCATCC+TGG | + | chr8_1:47385335-47385354 | Msa1197130:CDS | 40.0% | |
| ! | TGGTGATGAATTCAGGTAGT+CGG | + | chr8_1:47385500-47385519 | Msa1197130:intron | 40.0% |
| ! | ACCTATCTGCAGAAGCATAA+GGG | - | chr8_1:47385621-47385640 | None:intergenic | 40.0% |
| TTGCTTCAGATCATAGCAGA+GGG | - | chr8_1:47385700-47385719 | None:intergenic | 40.0% | |
| ATTGCTTCAGATCATAGCAG+AGG | - | chr8_1:47385701-47385720 | None:intergenic | 40.0% | |
| GGAATATATGTATGCTGACC+AGG | - | chr8_1:47385752-47385771 | None:intergenic | 40.0% | |
| ! | ATCCCTAGCCTTTCTTTGAA+GGG | - | chr8_1:47386013-47386032 | None:intergenic | 40.0% |
| ! | TATCCCTAGCCTTTCTTTGA+AGG | - | chr8_1:47386014-47386033 | None:intergenic | 40.0% |
| GCTAGGGATAAATCTTGACA+AGG | + | chr8_1:47386024-47386043 | Msa1197130:CDS | 40.0% | |
| !! | GAAATGGATTGTCTTGTTGC+AGG | + | chr8_1:47386052-47386071 | Msa1197130:CDS | 40.0% |
| ! | AGGAGCAAATTTTCTTCTCG+AGG | + | chr8_1:47386072-47386091 | Msa1197130:CDS | 40.0% |
| ! | GCAAATTTTCTTCTCGAGGT+AGG | + | chr8_1:47386076-47386095 | Msa1197130:intron | 40.0% |
| CCATATAGGTATAGGCTTCT+CGG | - | chr8_1:47386383-47386402 | None:intergenic | 40.0% | |
| CGAGAAGCCTATACCTATAT+GGG | + | chr8_1:47386381-47386400 | Msa1197130:CDS | 40.0% | |
| TTGCCTTTGATCACCCATAT+AGG | - | chr8_1:47386397-47386416 | None:intergenic | 40.0% | |
| ! | ATCTGGTGTTAGCATGATCA+AGG | + | chr8_1:47386470-47386489 | Msa1197130:CDS | 40.0% |
| TGGGTTCTATATAGACTGAC+AGG | + | chr8_1:47386729-47386748 | Msa1197130:intron | 40.0% | |
| GGGTTCTATATAGACTGACA+GGG | + | chr8_1:47386730-47386749 | Msa1197130:intron | 40.0% | |
| TTATCAGGGCAACAACAAAG+AGG | + | chr8_1:47386811-47386830 | Msa1197130:CDS | 40.0% | |
| CTTGTCGGAGATATTTATGG+TGG | + | chr8_1:47386842-47386861 | Msa1197130:CDS | 40.0% | |
| ! | CGGAGATATTTATGGTGGAA+TGG | + | chr8_1:47386847-47386866 | Msa1197130:CDS | 40.0% |
| AGATTACAGACCCGAAGATA+TGG | + | chr8_1:47387086-47387105 | Msa1197130:CDS | 40.0% | |
| AAGAGATCGAGCCATATCTT+CGG | - | chr8_1:47387100-47387119 | None:intergenic | 40.0% | |
| CAGTAGCATTTGGAAATCCA+TGG | - | chr8_1:47387165-47387184 | None:intergenic | 40.0% | |
| !! | AGGTATCGAGACATGCAAAA+AGG | - | chr8_1:47387263-47387282 | None:intergenic | 40.0% |
| ATGTCTCGATACCTGCAATT+TGG | + | chr8_1:47387269-47387288 | Msa1197130:intron | 40.0% | |
| CGAAAACTGACACCTAGTAT+AGG | - | chr8_1:47387683-47387702 | None:intergenic | 40.0% | |
| ! | GTCAGTTTTCGGTATCTAAG+AGG | + | chr8_1:47387692-47387711 | Msa1197130:intron | 40.0% |
| TTAGAGAATGGTAGGAAGAG+AGG | - | chr8_1:47387727-47387746 | None:intergenic | 40.0% | |
| GCAGATGTTAGGTTAGAGAA+TGG | - | chr8_1:47387739-47387758 | None:intergenic | 40.0% | |
| CTTTGTGAAGAGGAAACCAT+TGG | - | chr8_1:47387897-47387916 | None:intergenic | 40.0% | |
| CAATGGTTTCCTCTTCACAA+AGG | + | chr8_1:47387895-47387914 | Msa1197130:intron | 40.0% | |
| AGAAGTGATCCTTTGTGAAG+AGG | - | chr8_1:47387907-47387926 | None:intergenic | 40.0% | |
| AACTCTGCAATTGGAAAGTG+TGG | - | chr8_1:47387936-47387955 | None:intergenic | 40.0% | |
| !!! | GGGCTGAAGAGGATATTTTT+TGG | + | chr8_1:47388099-47388118 | Msa1197130:CDS | 40.0% |
| !!! | TCAGAGGCATCCTTTTACAA+TGG | + | chr8_1:47388134-47388153 | Msa1197130:CDS | 40.0% |
| CTGTTCATCAACTGCCAATT+TGG | + | chr8_1:47388206-47388225 | Msa1197130:intron | 40.0% | |
| GAACACAAAAGATAGCCTTC+GGG | + | chr8_1:47388385-47388404 | Msa1197130:intron | 40.0% | |
| CTGATCATGGTCATGTTTGT+CGG | - | chr8_1:47388417-47388436 | None:intergenic | 40.0% | |
| AAGCCAACGTTTATCTACGT+TGG | + | chr8_1:47388571-47388590 | Msa1197130:intron | 40.0% | |
| ATGCCAACGTAGATAAACGT+TGG | - | chr8_1:47388577-47388596 | None:intergenic | 40.0% | |
| GGAAGCAAGTTATGGTTTGA+AGG | + | chr8_1:47388661-47388680 | Msa1197130:intron | 40.0% | |
| ATCAGAAGCAAGTGTCAAGT+GGG | - | chr8_1:47388772-47388791 | None:intergenic | 40.0% | |
| AATCAGAAGCAAGTGTCAAG+TGG | - | chr8_1:47388773-47388792 | None:intergenic | 40.0% | |
| TAACTTGGTCGGACTTTGTT+GGG | - | chr8_1:47388969-47388988 | None:intergenic | 40.0% | |
| ! | TTAACTTGGTCGGACTTTGT+TGG | - | chr8_1:47388970-47388989 | None:intergenic | 40.0% |
| ! | ACAGCGAAAGTTAACTTGGT+CGG | - | chr8_1:47388980-47388999 | None:intergenic | 40.0% |
| ! | TTCGCTGTTGATAAGATGCA+TGG | + | chr8_1:47388992-47389011 | Msa1197130:CDS | 40.0% |
| AAGATGCATGGTCAACTAGA+TGG | + | chr8_1:47389004-47389023 | Msa1197130:CDS | 40.0% | |
| TGCGGCTTAGATGATGTTAT+TGG | + | chr8_1:47389066-47389085 | Msa1197130:exon | 40.0% | |
| CATCTTGCTCTCGATATTGG+AGG | + | chr8_1:47384263-47384282 | Msa1197130:CDS | 45.0% | |
| CTAAGGTTCTACGGAACGAT+TGG | - | chr8_1:47384557-47384576 | None:intergenic | 45.0% | |
| ACAGCTTAACTGCATTCCTC+CGG | - | chr8_1:47384644-47384663 | None:intergenic | 45.0% | |
| ! | TGATCATTTTGTGGACGGTG+AGG | + | chr8_1:47385187-47385206 | Msa1197130:CDS | 45.0% |
| ACCATGAAACTTCATCCTGG+AGG | + | chr8_1:47385338-47385357 | Msa1197130:CDS | 45.0% | |
| ACCTCCAGGATGAAGTTTCA+TGG | - | chr8_1:47385342-47385361 | None:intergenic | 45.0% | |
| AAAATTCTCCACACACCTCC+AGG | - | chr8_1:47385356-47385375 | None:intergenic | 45.0% | |
| TCCCTTATGCTTCTGCAGAT+AGG | + | chr8_1:47385617-47385636 | Msa1197130:intron | 45.0% | |
| ! | CACCTATCTGCAGAAGCATA+AGG | - | chr8_1:47385622-47385641 | None:intergenic | 45.0% |
| CATAGCAGAGGGACTCAAAT+TGG | - | chr8_1:47385689-47385708 | None:intergenic | 45.0% | |
| GCACATGCAGATGTAGAAGT+TGG | + | chr8_1:47385840-47385859 | Msa1197130:intron | 45.0% | |
| TTTGTATGAACCACCACCTG+TGG | - | chr8_1:47385981-47386000 | None:intergenic | 45.0% | |
| ATGCAGACCCCTTCAAAGAA+AGG | + | chr8_1:47386002-47386021 | Msa1197130:CDS | 45.0% | |
| ACCCCTTCAAAGAAAGGCTA+GGG | + | chr8_1:47386008-47386027 | Msa1197130:CDS | 45.0% | |
| ! | TCCCTAGCCTTTCTTTGAAG+GGG | - | chr8_1:47386012-47386031 | None:intergenic | 45.0% |
| CCGAGAAGCCTATACCTATA+TGG | + | chr8_1:47386380-47386399 | Msa1197130:CDS | 45.0% | |
| GGAAAGTTTGAGCGAGTTAG+TGG | + | chr8_1:47386607-47386626 | Msa1197130:CDS | 45.0% | |
| CGAGTTAGTGGAACGAGTAT+AGG | + | chr8_1:47386619-47386638 | Msa1197130:CDS | 45.0% | |
| GTTAGTGGAACGAGTATAGG+TGG | + | chr8_1:47386622-47386641 | Msa1197130:CDS | 45.0% | |
| !! | TATAGGTGGAGGCACTTTCT+GGG | + | chr8_1:47386636-47386655 | Msa1197130:CDS | 45.0% |
| ! | CTTCAGCTTTGATGAGTTGC+TGG | + | chr8_1:47386781-47386800 | Msa1197130:CDS | 45.0% |
| !! | TGGTGGAATGGACTATGCAA+AGG | + | chr8_1:47386859-47386878 | Msa1197130:CDS | 45.0% |
| AGAGATCGAGCCATATCTTC+GGG | - | chr8_1:47387099-47387118 | None:intergenic | 45.0% | |
| GACAGGTCAGTATTGTACCA+TGG | + | chr8_1:47387145-47387164 | Msa1197130:intron | 45.0% | |
| GAGTAGTGCACAGTAGCATT+TGG | - | chr8_1:47387175-47387194 | None:intergenic | 45.0% | |
| CGACAAACATGACCATGATC+AGG | + | chr8_1:47388415-47388434 | Msa1197130:intron | 45.0% | |
| GGTTAGCAGGAAGCAAGTTA+TGG | + | chr8_1:47388653-47388672 | Msa1197130:intron | 45.0% | |
| AGGCGAAAGCAATGTTCTTG+CGG | + | chr8_1:47388861-47388880 | Msa1197130:CDS | 45.0% | |
| TTGCGGCATGAAGGATTTCT+TGG | + | chr8_1:47388878-47388897 | Msa1197130:CDS | 45.0% | |
| GAAGGATTTCTTGGAGCTGT+AGG | + | chr8_1:47388887-47388906 | Msa1197130:CDS | 45.0% | |
| !!! | TTTATTACTTATTTATTTTT+AGG | + | chr8_1:47386694-47386713 | Msa1197130:intron | 5.0% |
| TTACCAGAGCCCCTTCTTTG+TGG | + | chr8_1:47384616-47384635 | Msa1197130:intron | 50.0% | |
| TACCAGAGCCCCTTCTTTGT+GGG | + | chr8_1:47384617-47384636 | Msa1197130:intron | 50.0% | |
| ! | TCATTTTGTGGACGGTGAGG+CGG | + | chr8_1:47385190-47385209 | Msa1197130:CDS | 50.0% |
| ! | AACTTCATCCTGGAGGTGTG+TGG | + | chr8_1:47385345-47385364 | Msa1197130:intron | 50.0% |
| AGTCGGCAGCAAGAAAATCC+CGG | + | chr8_1:47385517-47385536 | Msa1197130:CDS | 50.0% | |
| ACCATTGTTGTGAAGGCCAC+AGG | + | chr8_1:47385962-47385981 | Msa1197130:intron | 50.0% | |
| ACCTGTGGCCTTCACAACAA+TGG | - | chr8_1:47385966-47385985 | None:intergenic | 50.0% | |
| ATTGTTGTGAAGGCCACAGG+TGG | + | chr8_1:47385965-47385984 | Msa1197130:intron | 50.0% | |
| GACCCCTTCAAAGAAAGGCT+AGG | + | chr8_1:47386007-47386026 | Msa1197130:CDS | 50.0% | |
| AGTGGAACGAGTATAGGTGG+AGG | + | chr8_1:47386625-47386644 | Msa1197130:CDS | 50.0% | |
| !! | GTATAGGTGGAGGCACTTTC+TGG | + | chr8_1:47386635-47386654 | Msa1197130:CDS | 50.0% |
| !! | ATAGGTGGAGGCACTTTCTG+GGG | + | chr8_1:47386637-47386656 | Msa1197130:CDS | 50.0% |
| CCTCTTCAGCCCAAAACGAA+GGG | - | chr8_1:47388091-47388110 | None:intergenic | 50.0% | |
| TCCTCTTCAGCCCAAAACGA+AGG | - | chr8_1:47388092-47388111 | None:intergenic | 50.0% | |
| GTTCAGACGTAGCCTGATCA+TGG | - | chr8_1:47388430-47388449 | None:intergenic | 50.0% | |
| AGGCTACGTCTGAACTTCTC+AGG | + | chr8_1:47388435-47388454 | Msa1197130:intron | 50.0% | |
| ! | GCACATTCCTAAGGGTTAGC+AGG | + | chr8_1:47388640-47388659 | Msa1197130:intron | 50.0% |
| CTTGCTTCCTGCTAACCCTT+AGG | - | chr8_1:47388650-47388669 | None:intergenic | 50.0% | |
| GCAATGTTCTTGCGGCATGA+AGG | + | chr8_1:47388869-47388888 | Msa1197130:CDS | 50.0% | |
| TCCTCCGGTCCCACAAAGAA+GGG | - | chr8_1:47384629-47384648 | None:intergenic | 55.0% | |
| TTCCTCCGGTCCCACAAAGA+AGG | - | chr8_1:47384630-47384649 | None:intergenic | 55.0% | |
| !! | GGAGGCACTTTCTGGGGTTT+AGG | + | chr8_1:47386643-47386662 | Msa1197130:CDS | 55.0% |
| !! | CCCTTCGTTTTGGGCTGAAG+AGG | + | chr8_1:47388088-47388107 | Msa1197130:CDS | 55.0% |
| GTTTGTCGGTGACTTCCCGA+AGG | - | chr8_1:47388403-47388422 | None:intergenic | 55.0% | |
| GTCCCACAAAGAAGGGGCTC+TGG | - | chr8_1:47384622-47384641 | None:intergenic | 60.0% | |
| GAGCCCCTTCTTTGTGGGAC+CGG | + | chr8_1:47384622-47384641 | Msa1197130:intron | 60.0% | |
| CCTCCGGTCCCACAAAGAAG+GGG | - | chr8_1:47384628-47384647 | None:intergenic | 60.0% | |
| GTTGTGAAGGCCACAGGTGG+TGG | + | chr8_1:47385968-47385987 | Msa1197130:intron | 60.0% | |
| CCCCTTCTTTGTGGGACCGG+AGG | + | chr8_1:47384625-47384644 | Msa1197130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 47384088 | 47389273 | 47384088 | ID=Msa1197130;Name=Msa1197130 |
| chr8_1 | mRNA | 47384088 | 47389273 | 47384088 | ID=Msa1197130-mRNA-1;Parent=Msa1197130;Name=Msa1197130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=109|0.88|0.9|1|1|1|10|198|415 |
| chr8_1 | exon | 47384088 | 47384284 | 47384088 | ID=Msa1197130-mRNA-1:exon:14980;Parent=Msa1197130-mRNA-1 |
| chr8_1 | exon | 47385150 | 47385359 | 47385150 | ID=Msa1197130-mRNA-1:exon:14981;Parent=Msa1197130-mRNA-1 |
| chr8_1 | exon | 47385515 | 47385561 | 47385515 | ID=Msa1197130-mRNA-1:exon:14982;Parent=Msa1197130-mRNA-1 |
| chr8_1 | exon | 47385977 | 47386093 | 47385977 | ID=Msa1197130-mRNA-1:exon:14983;Parent=Msa1197130-mRNA-1 |
| chr8_1 | exon | 47386372 | 47386491 | 47386372 | ID=Msa1197130-mRNA-1:exon:14984;Parent=Msa1197130-mRNA-1 |
| chr8_1 | exon | 47386595 | 47386689 | 47386595 | ID=Msa1197130-mRNA-1:exon:14985;Parent=Msa1197130-mRNA-1 |
| chr8_1 | exon | 47386781 | 47386880 | 47386781 | ID=Msa1197130-mRNA-1:exon:14986;Parent=Msa1197130-mRNA-1 |
| chr8_1 | exon | 47387018 | 47387149 | 47387018 | ID=Msa1197130-mRNA-1:exon:14987;Parent=Msa1197130-mRNA-1 |
| chr8_1 | exon | 47388072 | 47388184 | 47388072 | ID=Msa1197130-mRNA-1:exon:14988;Parent=Msa1197130-mRNA-1 |
| chr8_1 | exon | 47388850 | 47389273 | 47388850 | ID=Msa1197130-mRNA-1:exon:14989;Parent=Msa1197130-mRNA-1 |
| chr8_1 | five_prime_UTR | 47384088 | 47384196 | 47384088 | ID=Msa1197130-mRNA-1:five_prime_utr;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47384197 | 47384284 | 47384197 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47385150 | 47385359 | 47385150 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47385515 | 47385561 | 47385515 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47385977 | 47386093 | 47385977 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47386372 | 47386491 | 47386372 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47386595 | 47386689 | 47386595 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47386781 | 47386880 | 47386781 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47387018 | 47387149 | 47387018 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47388072 | 47388184 | 47388072 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | CDS | 47388850 | 47389075 | 47388850 | ID=Msa1197130-mRNA-1:cds;Parent=Msa1197130-mRNA-1 |
| chr8_1 | three_prime_UTR | 47389076 | 47389273 | 47389076 | ID=Msa1197130-mRNA-1:three_prime_utr;Parent=Msa1197130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
