Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249880 | XP_013446004.1 | 97.596 | 416 | 7 | 2 | 1 | 415 | 1 | 414 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249880 | sp|Q0J035|PANK2_ORYSJ | 63.359 | 393 | 137 | 5 | 14 | 402 | 77 | 466 | 7.78e-170 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249880 | A0A072TS59 | 97.596 | 416 | 7 | 2 | 1 | 415 | 1 | 414 | 0.0 | 833 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa1249880 | 0.826891 | 2.114520e-54 | -8.615850e-47 |
| Msa0092410 | Msa1249880 | 0.801466 | 8.887870e-49 | -8.615850e-47 |
| Msa0673120 | Msa1249880 | 0.800200 | 1.611491e-48 | -8.615850e-47 |
| Msa0738240 | Msa1249880 | 0.804002 | 2.662186e-49 | -8.615850e-47 |
| Msa0124320 | Msa1249880 | 0.802923 | 4.456134e-49 | -8.615850e-47 |
| Msa1249880 | Msa1260680 | 0.832497 | 9.138569e-56 | -8.615850e-47 |
| Msa0408340 | Msa1249880 | 0.806096 | 9.712251e-50 | -8.615850e-47 |
| Msa1043120 | Msa1249880 | 0.808580 | 2.887964e-50 | -8.615850e-47 |
| Msa0269560 | Msa1249880 | 0.803283 | 3.753647e-49 | -8.615850e-47 |
| Msa1197130 | Msa1249880 | 0.930069 | 2.800062e-93 | -8.615850e-47 |
| Msa1219150 | Msa1249880 | 0.826512 | 2.604346e-54 | -8.615850e-47 |
| Msa0902830 | Msa1249880 | 0.800807 | 1.212039e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249880 | MtrunA17_Chr8g0365801 | 97.596 | 416 | 7 | 2 | 1 | 415 | 1 | 414 | 0.0 | 833 |
| Msa1249880 | MtrunA17_Chr3g0117581 | 60.192 | 417 | 143 | 6 | 1 | 402 | 45 | 453 | 8.74e-169 | 496 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249880 | AT4G32180.2 | 59.155 | 426 | 145 | 9 | 1 | 408 | 50 | 464 | 2.56e-165 | 484 |
| Msa1249880 | AT4G32180.3 | 59.155 | 426 | 145 | 9 | 1 | 408 | 50 | 464 | 2.56e-165 | 484 |
| Msa1249880 | AT4G32180.1 | 59.155 | 426 | 145 | 9 | 1 | 408 | 50 | 464 | 1.05e-163 | 483 |
| Msa1249880 | AT1G60440.1 | 62.437 | 394 | 131 | 3 | 19 | 412 | 4 | 380 | 3.61e-157 | 449 |
| Msa1249880 | AT1G60440.2 | 69.128 | 298 | 90 | 1 | 115 | 412 | 8 | 303 | 3.66e-132 | 382 |
| Msa1249880 | AT1G60440.3 | 55.584 | 394 | 119 | 4 | 19 | 412 | 4 | 341 | 2.31e-129 | 377 |
Find 100 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATAGGTGGAGGCACTTTC+TGG | 0.182686 | 8_2:+45048143 | Msa1249880:CDS |
| TACTTAAATGCCCTTCGTTT+TGG | 0.195161 | 8_2:+45049586 | Msa1249880:CDS |
| GATTTCTCTGAAGTGTTTCT+AGG | 0.195199 | 8_2:-45046172 | None:intergenic |
| CCATATCTTCTTGTTAATAT+TGG | 0.206082 | 8_2:+45047404 | Msa1249880:CDS |
| TATCTGTTGCTGTTAATTTC+TGG | 0.211148 | 8_2:+45049671 | Msa1249880:CDS |
| TACACAAAATGAATATTATA+TGG | 0.235387 | 8_2:-45044533 | None:intergenic |
| GTTGCTGGAATTAAGTTATC+AGG | 0.258626 | 8_2:+45048304 | Msa1249880:CDS |
| ATAGATATTGGTTGACTTCC+GGG | 0.270706 | 8_2:-45046486 | None:intergenic |
| TTAATTACCTTAATAGATAT+TGG | 0.275525 | 8_2:-45046498 | None:intergenic |
| ATGCTTGTCGGAGATATTTA+TGG | 0.278415 | 8_2:+45048347 | Msa1249880:CDS |
| AAAGGCAATGTCTGATAAAA+AGG | 0.281844 | 8_2:+45048564 | Msa1249880:CDS |
| AGAATGATTTCAAATAATAT+TGG | 0.285969 | 8_2:+45048631 | Msa1249880:CDS |
| GGAGGCACTTTCTGGGGTTT+AGG | 0.287312 | 8_2:+45048151 | Msa1249880:CDS |
| CTTCAGCTTTGATGAGTTGC+TGG | 0.304425 | 8_2:+45048289 | Msa1249880:CDS |
| ACATGGCCTCAAAGAATTAT+TGG | 0.307848 | 8_2:+45050432 | Msa1249880:CDS |
| AGGAACCATCCTGTTCTTAA+AGG | 0.312390 | 8_2:+45046205 | Msa1249880:CDS |
| AAGTCAACCAATATCTATTA+AGG | 0.312782 | 8_2:+45046491 | Msa1249880:CDS |
| GATAGTGTATCCATTGTAAA+AGG | 0.314727 | 8_2:-45049652 | None:intergenic |
| CTTTAATGAAGATTTGTAAT+AGG | 0.314760 | 8_2:+45050663 | Msa1249880:three_prime_UTR |
| AATAGATATTGGTTGACTTC+CGG | 0.321055 | 8_2:-45046487 | None:intergenic |
| TTGCGGCATGAAGGATTTCT+TGG | 0.322380 | 8_2:+45050379 | Msa1249880:CDS |
| CCGAGAAGCCTATACCTATA+TGG | 0.323228 | 8_2:+45047337 | Msa1249880:CDS |
| ACATGAGTTGTTGATGGATT+AGG | 0.328971 | 8_2:-45044664 | None:intergenic |
| GATGGATTAGGATCGGAATT+TGG | 0.330679 | 8_2:-45044652 | None:intergenic |
| TATCATCTTGCTCTCGATAT+TGG | 0.342399 | 8_2:+45044688 | Msa1249880:CDS |
| TATCCCTAGCCTTTCTTTGA+AGG | 0.348131 | 8_2:-45046968 | None:intergenic |
| ACTGCAATAGCATCTAGTTT+TGG | 0.351488 | 8_2:+45048541 | Msa1249880:CDS |
| TTGATCACCCATATAGGTAT+AGG | 0.360507 | 8_2:-45047345 | None:intergenic |
| TATTGAGTGTAGTGTGTATT+CGG | 0.368167 | 8_2:+45050549 | Msa1249880:CDS |
| CCAATATTAACAAGAAGATA+TGG | 0.371904 | 8_2:-45047404 | None:intergenic |
| TTCGGCTTAGATGATGTTAT+TGG | 0.371909 | 8_2:+45050567 | Msa1249880:exon |
| TAACTTGGTCGGACTTTGTT+GGG | 0.379531 | 8_2:-45050467 | None:intergenic |
| CCATATAGGTATAGGCTTCT+CGG | 0.381859 | 8_2:-45047337 | None:intergenic |
| TTGAGCTTTCCTTTAAGAAC+AGG | 0.385427 | 8_2:-45046214 | None:intergenic |
| CTTCTTGTTAATATTGGATC+TGG | 0.386128 | 8_2:+45047410 | Msa1249880:CDS |
| TTGCCTTTGATCACCCATAT+AGG | 0.387321 | 8_2:-45047351 | None:intergenic |
| TATAGGTGGAGGCACTTTCT+GGG | 0.396912 | 8_2:+45048144 | Msa1249880:CDS |
| GGAAAGTTTGAGCGAGTTAG+TGG | 0.402390 | 8_2:+45048115 | Msa1249880:CDS |
| TCTTGACAAGGAAGATGAAA+TGG | 0.404418 | 8_2:+45046993 | Msa1249880:CDS |
| TTCATATAGGTGGAAGGAAA+TGG | 0.417291 | 8_2:+45048094 | Msa1249880:intron |
| GCTTGACCAATAATTCTTTG+AGG | 0.417859 | 8_2:-45050438 | None:intergenic |
| TGATAAACATGAGTTGTTGA+TGG | 0.420275 | 8_2:-45044670 | None:intergenic |
| ATCCCTAGCCTTTCTTTGAA+GGG | 0.426273 | 8_2:-45046967 | None:intergenic |
| AGATTACAGACCCGAAGATA+TGG | 0.429533 | 8_2:+45048594 | Msa1249880:CDS |
| TATTATATGGGTTGGTAGGT+TGG | 0.441294 | 8_2:-45044520 | None:intergenic |
| TTACAAATCTTCATTAAAGA+AGG | 0.443378 | 8_2:-45050659 | None:intergenic |
| CAACTAGATGGTGAATTGTT+TGG | 0.453366 | 8_2:+45050517 | Msa1249880:CDS |
| TGAATATTATATGGGTTGGT+AGG | 0.460283 | 8_2:-45044524 | None:intergenic |
| GAAATGGATTGTCTTGTTGC+AGG | 0.461214 | 8_2:+45047009 | Msa1249880:CDS |
| ATCAACAGCGAAAGTTAACT+TGG | 0.461877 | 8_2:-45050482 | None:intergenic |
| AAGAGATCGAGCCATATCTT+CGG | 0.465688 | 8_2:-45048605 | None:intergenic |
| CGAGTTAGTGGAACGAGTAT+AGG | 0.467173 | 8_2:+45048127 | Msa1249880:CDS |
| ACCTCCAGGATGAAGTTTCA+TGG | 0.470308 | 8_2:-45046290 | None:intergenic |
| TTAACTTGGTCGGACTTTGT+TGG | 0.484620 | 8_2:-45050468 | None:intergenic |
| ATGCAGACCCCTTCAAAGAA+AGG | 0.486872 | 8_2:+45046959 | Msa1249880:CDS |
| CGAGAAGCCTATACCTATAT+GGG | 0.487207 | 8_2:+45047338 | Msa1249880:CDS |
| ACACAAAATGAATATTATAT+GGG | 0.488879 | 8_2:-45044532 | None:intergenic |
| AACACTTCAGAGAAATCAAA+AGG | 0.489305 | 8_2:+45046178 | Msa1249880:CDS |
| AGAGATCGAGCCATATCTTC+GGG | 0.493566 | 8_2:-45048604 | None:intergenic |
| TCCCTAGCCTTTCTTTGAAG+GGG | 0.495185 | 8_2:-45046966 | None:intergenic |
| ACCATTGTTGTGAAGGCCAC+AGG | 0.503696 | 8_2:+45046919 | Msa1249880:intron |
| CATCTTGCTCTCGATATTGG+AGG | 0.519040 | 8_2:+45044691 | Msa1249880:CDS |
| GAAGGATTTCTTGGAGCTGT+AGG | 0.521139 | 8_2:+45050388 | Msa1249880:CDS |
| CGGAGATATTTATGGTGGAA+TGG | 0.522518 | 8_2:+45048355 | Msa1249880:CDS |
| GATTTCAAATAATATTGGAC+AGG | 0.523645 | 8_2:+45048636 | Msa1249880:CDS |
| ATAGGTGGAGGCACTTTCTG+GGG | 0.526740 | 8_2:+45048145 | Msa1249880:CDS |
| GTTGTGAAGGCCACAGGTGG+TGG | 0.533246 | 8_2:+45046925 | Msa1249880:intron |
| GCAATGTTCTTGCGGCATGA+AGG | 0.537851 | 8_2:+45050370 | Msa1249880:CDS |
| AAGATGCATGGTCAACTAGA+TGG | 0.539599 | 8_2:+45050505 | Msa1249880:CDS |
| AAAATGAATATTATATGGGT+TGG | 0.544613 | 8_2:-45044528 | None:intergenic |
| AAAGAGGTAGATATGCTTGT+CGG | 0.545876 | 8_2:+45048335 | Msa1249880:CDS |
| TTTCAATTCATATAGGTGGA+AGG | 0.547834 | 8_2:+45048088 | Msa1249880:intron |
| ATCTGGTGTTAGCATGATCA+AGG | 0.553570 | 8_2:+45047427 | Msa1249880:CDS |
| ACCCCTTCAAAGAAAGGCTA+GGG | 0.559074 | 8_2:+45046965 | Msa1249880:CDS |
| TTCGCTGTTGATAAGATGCA+TGG | 0.566331 | 8_2:+45050493 | Msa1249880:CDS |
| AGAATTATTGGTCAAGCAAG+AGG | 0.566501 | 8_2:+45050444 | Msa1249880:CDS |
| TTGCTGGAATTAAGTTATCA+GGG | 0.566970 | 8_2:+45048305 | Msa1249880:CDS |
| AGTTGTTGATGGATTAGGAT+CGG | 0.569966 | 8_2:-45044659 | None:intergenic |
| TCCTCTTCAGCCCAAAACGA+AGG | 0.571979 | 8_2:-45049597 | None:intergenic |
| AAGACCATGAAACTTCATCC+TGG | 0.584192 | 8_2:+45046286 | Msa1249880:CDS |
| GACCCCTTCAAAGAAAGGCT+AGG | 0.589090 | 8_2:+45046964 | Msa1249880:CDS |
| CAGAGAAATCAAAAGGCAGA+AGG | 0.591700 | 8_2:+45046185 | Msa1249880:CDS |
| CTTGTCGGAGATATTTATGG+TGG | 0.598989 | 8_2:+45048350 | Msa1249880:CDS |
| AGTCGGCAGCAAGAAAATCC+CGG | 0.600104 | 8_2:+45046468 | Msa1249880:CDS |
| TGGTGATGAATTCAGGTAGT+CGG | 0.600307 | 8_2:+45046451 | Msa1249880:intron |
| ATACCTATATGGGTGATCAA+AGG | 0.601771 | 8_2:+45047348 | Msa1249880:CDS |
| CCTCTTCAGCCCAAAACGAA+GGG | 0.612270 | 8_2:-45049596 | None:intergenic |
| GTTAGTGGAACGAGTATAGG+TGG | 0.612326 | 8_2:+45048130 | Msa1249880:CDS |
| ATGTTTATCAGAACTCATGA+AGG | 0.615934 | 8_2:-45050413 | None:intergenic |
| AGGCGAAAGCAATGTTCTTG+CGG | 0.618547 | 8_2:+45050362 | Msa1249880:CDS |
| ACAGCGAAAGTTAACTTGGT+CGG | 0.621202 | 8_2:-45050478 | None:intergenic |
| TGGTGGAATGGACTATGCAA+AGG | 0.622264 | 8_2:+45048367 | Msa1249880:CDS |
| GCTTTCCTTTAAGAACAGGA+TGG | 0.628821 | 8_2:-45046210 | None:intergenic |
| TTTGTATGAACCACCACCTG+TGG | 0.635445 | 8_2:-45046935 | None:intergenic |
| GCTAGGGATAAATCTTGACA+AGG | 0.666525 | 8_2:+45046981 | Msa1249880:CDS |
| AGTGGAACGAGTATAGGTGG+AGG | 0.675883 | 8_2:+45048133 | Msa1249880:CDS |
| TTATCAGGGCAACAACAAAG+AGG | 0.690955 | 8_2:+45048319 | Msa1249880:CDS |
| ACCATGAAACTTCATCCTGG+AGG | 0.702347 | 8_2:+45046289 | Msa1249880:CDS |
| ATTGTTGTGAAGGCCACAGG+TGG | 0.737174 | 8_2:+45046922 | Msa1249880:intron |
| TTCATGAGTTCTGATAAACA+TGG | 0.742858 | 8_2:+45050415 | Msa1249880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTGATGTTTAAATAT+GGG | - | chr8_2:45047111-45047130 | None:intergenic | 10.0% |
| !! | ATTTATTTGATGTTTAAATA+TGG | - | chr8_2:45047112-45047131 | None:intergenic | 10.0% |
| !! | AATATTAAAAAATTCAGAAT+TGG | - | chr8_2:45048040-45048059 | None:intergenic | 10.0% |
| !! | AATTTAAAAAAAAGATTTAG+TGG | + | chr8_2:45048907-45048926 | Msa1249880:intron | 10.0% |
| !! | ACACAAAATGAATATTATAT+GGG | - | chr8_2:45044535-45044554 | None:intergenic | 15.0% |
| !! | TACACAAAATGAATATTATA+TGG | - | chr8_2:45044536-45044555 | None:intergenic | 15.0% |
| !! | AAGAAGAAAAATAAACAAAA+TGG | + | chr8_2:45044606-45044625 | Msa1249880:exon | 15.0% |
| !! | TAATAAACGTTTAAATAAGT+TGG | - | chr8_2:45044916-45044935 | None:intergenic | 15.0% |
| !!! | ATGATCATTTTTTTTTATGA+AGG | + | chr8_2:45045431-45045450 | Msa1249880:intron | 15.0% |
| !! | TTAATTACCTTAATAGATAT+TGG | - | chr8_2:45046501-45046520 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr8_2:45047947-45047966 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr8_2:45047946-45047965 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr8_2:45047855-45047874 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr8_2:45047755-45047774 | Msa1249880:intron | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr8_2:45047790-45047809 | Msa1249880:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr8_2:45047946-45047965 | Msa1249880:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr8_2:45047947-45047966 | Msa1249880:intron | 15.0% |
| !! | TTGGAAGAATATAAAATTTA+GGG | - | chr8_2:45048021-45048040 | None:intergenic | 15.0% |
| !! | ATTGGAAGAATATAAAATTT+AGG | - | chr8_2:45048022-45048041 | None:intergenic | 15.0% |
| !! | AGAATGATTTCAAATAATAT+TGG | + | chr8_2:45048631-45048650 | Msa1249880:CDS | 15.0% |
| !! | ACAATAAATATATAAATAGG+AGG | - | chr8_2:45049487-45049506 | None:intergenic | 15.0% |
| !! | TGCACAATAAATATATAAAT+AGG | - | chr8_2:45049490-45049509 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTTGTTGAACA+TGG | - | chr8_2:45049972-45049991 | None:intergenic | 15.0% |
| !!! | TGAATCTTTGTTTATTTTTT+AGG | + | chr8_2:45050329-45050348 | Msa1249880:intron | 15.0% |
| !! | AAAATGAATATTATATGGGT+TGG | - | chr8_2:45044531-45044550 | None:intergenic | 20.0% |
| !! | ATTACTACTAACAGTAAAAA+TGG | - | chr8_2:45044757-45044776 | None:intergenic | 20.0% |
| !! | ATCAAAATTGATCAGAATAT+TGG | - | chr8_2:45044836-45044855 | None:intergenic | 20.0% |
| !!! | AATATTCTGATCAATTTTGA+TGG | + | chr8_2:45044835-45044854 | Msa1249880:intron | 20.0% |
| !!! | TTTTAGAATTAAGCTGTTTT+TGG | + | chr8_2:45044886-45044905 | Msa1249880:intron | 20.0% |
| !!! | TTTAGAATTAAGCTGTTTTT+GGG | + | chr8_2:45044887-45044906 | Msa1249880:intron | 20.0% |
| !!! | TATGCCTTAAGTTATTTTTT+TGG | - | chr8_2:45045134-45045153 | None:intergenic | 20.0% |
| !! | AAAAAAATAACTTAAGGCAT+AGG | + | chr8_2:45045133-45045152 | Msa1249880:intron | 20.0% |
| !! | TAATAGGATAATCCAATATA+AGG | + | chr8_2:45045206-45045225 | Msa1249880:intron | 20.0% |
| !! | ACAAATTTCGAATTTATAGA+AGG | + | chr8_2:45045340-45045359 | Msa1249880:intron | 20.0% |
| !!! | GACTTTTGATTAAAAAGAAA+AGG | + | chr8_2:45045561-45045580 | Msa1249880:intron | 20.0% |
| !!! | TTTTGATTTTGTTAGAATTG+TGG | + | chr8_2:45045592-45045611 | Msa1249880:intron | 20.0% |
| !! | AATATTTGATTACAGTGTAT+GGG | - | chr8_2:45046372-45046391 | None:intergenic | 20.0% |
| !!! | ATACATTGCATTTTATTGAA+TGG | - | chr8_2:45046848-45046867 | None:intergenic | 20.0% |
| !! | TTAAACATCAAATAAATGAC+TGG | + | chr8_2:45047115-45047134 | Msa1249880:intron | 20.0% |
| !! | AAGATTATTTATTGAACGAA+TGG | - | chr8_2:45047159-45047178 | None:intergenic | 20.0% |
| !!! | AACATATATGCTAAACTTTT+GGG | - | chr8_2:45047188-45047207 | None:intergenic | 20.0% |
| !! | ATTCAAGATACATAAATTCT+AGG | + | chr8_2:45047458-45047477 | Msa1249880:intron | 20.0% |
| !! | TTCAAGATACATAAATTCTA+GGG | + | chr8_2:45047459-45047478 | Msa1249880:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr8_2:45047884-45047903 | Msa1249880:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr8_2:45047885-45047904 | Msa1249880:intron | 20.0% |
| !!! | TCAATGTTTTCAATTCATAT+AGG | + | chr8_2:45048081-45048100 | Msa1249880:intron | 20.0% |
| !!! | TTTTTAGGACATATTCATTA+TGG | + | chr8_2:45048217-45048236 | Msa1249880:intron | 20.0% |
| !!! | TTTTAGGACATATTCATTAT+GGG | + | chr8_2:45048218-45048237 | Msa1249880:intron | 20.0% |
| !! | ATTGTATCATCATATTAATC+AGG | - | chr8_2:45048422-45048441 | None:intergenic | 20.0% |
| !!! | ATTACTCTAAACGTTTTAAA+TGG | + | chr8_2:45048440-45048459 | Msa1249880:intron | 20.0% |
| !! | AAAAAATAAAACCAAATTGC+AGG | - | chr8_2:45048791-45048810 | None:intergenic | 20.0% |
| !! | TTGTTTATTAATCCTATACT+AGG | + | chr8_2:45049176-45049195 | Msa1249880:intron | 20.0% |
| !! | CATTAAAATTGAACAGAAAA+TGG | + | chr8_2:45049363-45049382 | Msa1249880:intron | 20.0% |
| !!! | AATATTTATGTCACTTTAAG+CGG | + | chr8_2:45049509-45049528 | Msa1249880:intron | 20.0% |
| !! | AATCTCAAATGAGTTATTAT+TGG | - | chr8_2:45049789-45049808 | None:intergenic | 20.0% |
| !!! | TGTTTATTTTTTAGGTCTAA+AGG | + | chr8_2:45050337-45050356 | Msa1249880:intron | 20.0% |
| !! | TTACAAATCTTCATTAAAGA+AGG | - | chr8_2:45050662-45050681 | None:intergenic | 20.0% |
| !! | CTTTAATGAAGATTTGTAAT+AGG | + | chr8_2:45050663-45050682 | Msa1249880:three_prime_UTR | 20.0% |
| !!! | CTATTTTTCTATTACATTTC+TGG | - | chr8_2:45050691-45050710 | None:intergenic | 20.0% |
| !!! | TTTTCATTGATATAAACAAG+TGG | - | chr8_2:45050717-45050736 | None:intergenic | 20.0% |
| ! | ATTGATCAGAATATTGGAAA+AGG | - | chr8_2:45044830-45044849 | None:intergenic | 25.0% |
| ! | CAAGCCAAAAAAATAACTTA+AGG | + | chr8_2:45045127-45045146 | Msa1249880:intron | 25.0% |
| ! | TACACAAACACTTGTATAAT+AGG | + | chr8_2:45045190-45045209 | Msa1249880:intron | 25.0% |
| !! | CTTGGTAATTTCTTAACAAT+AGG | + | chr8_2:45045255-45045274 | Msa1249880:intron | 25.0% |
| ! | TCGAATTTATAGAAGGATTA+TGG | + | chr8_2:45045347-45045366 | Msa1249880:intron | 25.0% |
| ! | TCTAAGTTTATTGTTGAGAA+TGG | + | chr8_2:45045501-45045520 | Msa1249880:intron | 25.0% |
| ! | CTAAGTTTATTGTTGAGAAT+GGG | + | chr8_2:45045502-45045521 | Msa1249880:intron | 25.0% |
| ! | ATACAATACAAGAGAATCAA+AGG | - | chr8_2:45045710-45045729 | None:intergenic | 25.0% |
| ! | GATTCTCTTGTATTGTATAT+AGG | + | chr8_2:45045712-45045731 | Msa1249880:intron | 25.0% |
| ! | AGGAGATTAAATTAACACTA+AGG | + | chr8_2:45045732-45045751 | Msa1249880:intron | 25.0% |
| ! | GGAGATTAAATTAACACTAA+GGG | + | chr8_2:45045733-45045752 | Msa1249880:intron | 25.0% |
| ! | TTGTTCAATGTTAGAAATGT+GGG | - | chr8_2:45045849-45045868 | None:intergenic | 25.0% |
| ! | TTTGTTCAATGTTAGAAATG+TGG | - | chr8_2:45045850-45045869 | None:intergenic | 25.0% |
| !! | GCTTAGAATTATGTTTTCTT+AGG | + | chr8_2:45045959-45045978 | Msa1249880:intron | 25.0% |
| ! | TTAATGAGTACGGTATTATT+TGG | + | chr8_2:45046039-45046058 | Msa1249880:intron | 25.0% |
| ! | TAATGAGTACGGTATTATTT+GGG | + | chr8_2:45046040-45046059 | Msa1249880:intron | 25.0% |
| !!! | GATGATGATTATTTTGTTGA+CGG | + | chr8_2:45046133-45046152 | Msa1249880:CDS | 25.0% |
| ! | GAATATTTGATTACAGTGTA+TGG | - | chr8_2:45046373-45046392 | None:intergenic | 25.0% |
| ! | TTACGTCAATTAATTGTAAC+TGG | + | chr8_2:45046431-45046450 | Msa1249880:intron | 25.0% |
| ! | AAGTCAACCAATATCTATTA+AGG | + | chr8_2:45046491-45046510 | Msa1249880:CDS | 25.0% |
| !! | TTGATTTTTACTAAGCTTCT+AGG | - | chr8_2:45046724-45046743 | None:intergenic | 25.0% |
| ! | AGCATAATTAGTATGTTAGT+AGG | - | chr8_2:45047061-45047080 | None:intergenic | 25.0% |
| !! | CAACATATATGCTAAACTTT+TGG | - | chr8_2:45047189-45047208 | None:intergenic | 25.0% |
| !!! | TACCACATTGATTAGTTTTA+TGG | + | chr8_2:45047212-45047231 | Msa1249880:intron | 25.0% |
| ! | CCAATATTAACAAGAAGATA+TGG | - | chr8_2:45047407-45047426 | None:intergenic | 25.0% |
| ! | CCATATCTTCTTGTTAATAT+TGG | + | chr8_2:45047404-45047423 | Msa1249880:CDS | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr8_2:45047595-45047614 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr8_2:45047596-45047615 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr8_2:45047918-45047937 | Msa1249880:intron | 25.0% |
| !! | ATGTTTTCAATTCATATAGG+TGG | + | chr8_2:45048084-45048103 | Msa1249880:intron | 25.0% |
| ! | GATTTCAAATAATATTGGAC+AGG | + | chr8_2:45048636-45048655 | Msa1249880:CDS | 25.0% |
| ! | GTACCTTTCTATGTTTATAA+TGG | + | chr8_2:45048826-45048845 | Msa1249880:intron | 25.0% |
| ! | CAACCATTATAAACATAGAA+AGG | - | chr8_2:45048832-45048851 | None:intergenic | 25.0% |
| ! | CTTTCTATGTTTATAATGGT+TGG | + | chr8_2:45048830-45048849 | Msa1249880:intron | 25.0% |
| ! | ATACAGAGAAGACAAAAATA+GGG | - | chr8_2:45048873-45048892 | None:intergenic | 25.0% |
| ! | AATACAGAGAAGACAAAAAT+AGG | - | chr8_2:45048874-45048893 | None:intergenic | 25.0% |
| !! | TAACATGCAAAGTATCATTT+AGG | - | chr8_2:45048965-45048984 | None:intergenic | 25.0% |
| !! | TGTTATTGATAGTTGTTTGA+TGG | + | chr8_2:45048980-45048999 | Msa1249880:intron | 25.0% |
| ! | TTATGTTAGATATTAGCGTT+TGG | + | chr8_2:45049117-45049136 | Msa1249880:intron | 25.0% |
| !! | TTTTATTAGCGAATCTTCTT+GGG | + | chr8_2:45049147-45049166 | Msa1249880:intron | 25.0% |
| ! | AAAATTAGAATTCTGTCCAA+TGG | + | chr8_2:45049386-45049405 | Msa1249880:intron | 25.0% |
| ! | TAAGAATTTAACTCTGCAAT+TGG | - | chr8_2:45049453-45049472 | None:intergenic | 25.0% |
| !!! | ATATTTATGTCACTTTAAGC+GGG | + | chr8_2:45049510-45049529 | Msa1249880:intron | 25.0% |
| !! | AACTAATATGGATTATGTTG+TGG | + | chr8_2:45049743-45049762 | Msa1249880:intron | 25.0% |
| !! | ACTAATATGGATTATGTTGT+GGG | + | chr8_2:45049744-45049763 | Msa1249880:intron | 25.0% |
| !! | AGTTTTTGTGAATGTTGTAA+GGG | - | chr8_2:45049820-45049839 | None:intergenic | 25.0% |
| !! | AAGTTTTTGTGAATGTTGTA+AGG | - | chr8_2:45049821-45049840 | None:intergenic | 25.0% |
| !! | ACAACATTCACAAAAACTTT+TGG | + | chr8_2:45049822-45049841 | Msa1249880:intron | 25.0% |
| !!! | ACAAAAACTTTTGGTTCTAT+AGG | + | chr8_2:45049831-45049850 | Msa1249880:intron | 25.0% |
| !! | ATGTTCAACTAGTATTGTTT+TGG | - | chr8_2:45049858-45049877 | None:intergenic | 25.0% |
| !!! | AACTACAATTTTAGCACATT+CGG | + | chr8_2:45050132-45050151 | Msa1249880:intron | 25.0% |
| ! | TTTCTGATTAAAATCATGTC+AGG | - | chr8_2:45050297-45050316 | None:intergenic | 25.0% |
| !! | TGAATATTATATGGGTTGGT+AGG | - | chr8_2:45044527-45044546 | None:intergenic | 30.0% |
| TGATAAACATGAGTTGTTGA+TGG | - | chr8_2:45044673-45044692 | None:intergenic | 30.0% | |
| !! | TGATCAATTTTGATGGAGAT+TGG | + | chr8_2:45044842-45044861 | Msa1249880:intron | 30.0% |
| AATCTATACTAGTGCACTTA+CGG | + | chr8_2:45045101-45045120 | Msa1249880:intron | 30.0% | |
| ! | AGCTTGTTTACACCTTATAT+TGG | - | chr8_2:45045221-45045240 | None:intergenic | 30.0% |
| TGTAACTGAATACACCTAAT+TGG | + | chr8_2:45045391-45045410 | Msa1249880:intron | 30.0% | |
| TGAATACACCTAATTGGATA+AGG | + | chr8_2:45045397-45045416 | Msa1249880:intron | 30.0% | |
| AACAACAACCTTATCCAATT+AGG | - | chr8_2:45045408-45045427 | None:intergenic | 30.0% | |
| TAGTTGAATTGCTATCACTT+AGG | + | chr8_2:45045474-45045493 | Msa1249880:intron | 30.0% | |
| ! | TGATTTTGTTAGAATTGTGG+AGG | + | chr8_2:45045595-45045614 | Msa1249880:intron | 30.0% |
| GGCATTATTATAGCAGTAAA+TGG | - | chr8_2:45045689-45045708 | None:intergenic | 30.0% | |
| ! | AAAATGATTTGTAGCATCTC+TGG | + | chr8_2:45045868-45045887 | Msa1249880:intron | 30.0% |
| AAACATAATTCTAAGCTGAG+AGG | - | chr8_2:45045955-45045974 | None:intergenic | 30.0% | |
| AACACTTCAGAGAAATCAAA+AGG | + | chr8_2:45046178-45046197 | Msa1249880:CDS | 30.0% | |
| ! | AATAGATATTGGTTGACTTC+CGG | - | chr8_2:45046490-45046509 | None:intergenic | 30.0% |
| ATAAGGGAAACAGAAACAAA+TGG | - | chr8_2:45046556-45046575 | None:intergenic | 30.0% | |
| ! | ATGTTTAGTATTGAAGCACT+TGG | + | chr8_2:45046866-45046885 | Msa1249880:intron | 30.0% |
| AATGAAAACCATTGTTGTGA+AGG | + | chr8_2:45046912-45046931 | Msa1249880:intron | 30.0% | |
| CACAAACAACTACACTATTA+TGG | - | chr8_2:45047238-45047257 | None:intergenic | 30.0% | |
| ! | AATTCTCAAAGTGCTTAAGA+AGG | - | chr8_2:45047265-45047284 | None:intergenic | 30.0% |
| ! | TGTCTTGTTCTTCTTTCTAT+AGG | + | chr8_2:45047307-45047326 | Msa1249880:intron | 30.0% |
| CTTCTTGTTAATATTGGATC+TGG | + | chr8_2:45047410-45047429 | Msa1249880:CDS | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr8_2:45047978-45047997 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr8_2:45047977-45047996 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | + | chr8_2:45047658-45047677 | Msa1249880:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr8_2:45047917-45047936 | Msa1249880:intron | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr8_2:45047977-45047996 | Msa1249880:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr8_2:45047978-45047997 | Msa1249880:intron | 30.0% |
| TTTCAATTCATATAGGTGGA+AGG | + | chr8_2:45048088-45048107 | Msa1249880:intron | 30.0% | |
| TTGCTGGAATTAAGTTATCA+GGG | + | chr8_2:45048305-45048324 | Msa1249880:CDS | 30.0% | |
| ATGGAGATCAACATTATCTT+AGG | + | chr8_2:45048459-45048478 | Msa1249880:intron | 30.0% | |
| TGGAGATCAACATTATCTTA+GGG | + | chr8_2:45048460-45048479 | Msa1249880:intron | 30.0% | |
| AACATTATCTTAGGGCTATT+CGG | + | chr8_2:45048468-45048487 | Msa1249880:intron | 30.0% | |
| !!! | AATAGCATCTAGTTTTGGAA+AGG | + | chr8_2:45048546-45048565 | Msa1249880:CDS | 30.0% |
| AAAGGCAATGTCTGATAAAA+AGG | + | chr8_2:45048564-45048583 | Msa1249880:CDS | 30.0% | |
| CACTAGATACATTGTACAAA+TGG | - | chr8_2:45048740-45048759 | None:intergenic | 30.0% | |
| CTTAGTCGCTAAATAAAAGA+AGG | + | chr8_2:45048936-45048955 | Msa1249880:intron | 30.0% | |
| ! | AGCTTTTACATACATATGCA+TGG | + | chr8_2:45049094-45049113 | Msa1249880:intron | 30.0% |
| !! | GTTTTATTAGCGAATCTTCT+TGG | + | chr8_2:45049146-45049165 | Msa1249880:intron | 30.0% |
| ! | GTTTTCATTATGCAGATGTT+AGG | - | chr8_2:45049258-45049277 | None:intergenic | 30.0% |
| CTGTTATGAAGCGAATAAAA+AGG | + | chr8_2:45049298-45049317 | Msa1249880:intron | 30.0% | |
| ATGAAGCGAATAAAAAGGAA+TGG | + | chr8_2:45049303-45049322 | Msa1249880:intron | 30.0% | |
| ! | TTTAAGCGGGAAATGAATTT+TGG | + | chr8_2:45049523-45049542 | Msa1249880:intron | 30.0% |
| !!! | TTGGTGGATTTTTTATTCAG+AGG | + | chr8_2:45049626-45049645 | Msa1249880:CDS | 30.0% |
| GATAGTGTATCCATTGTAAA+AGG | - | chr8_2:45049655-45049674 | None:intergenic | 30.0% | |
| ! | TATCTGTTGCTGTTAATTTC+TGG | + | chr8_2:45049671-45049690 | Msa1249880:CDS | 30.0% |
| ! | TTAGTTATGAAGCACCAAAT+TGG | - | chr8_2:45049729-45049748 | None:intergenic | 30.0% |
| ! | TTGGTGCTTCATAACTAATA+TGG | + | chr8_2:45049731-45049750 | Msa1249880:intron | 30.0% |
| !! | ACTACAATTTTAGCACATTC+GGG | + | chr8_2:45050133-45050152 | Msa1249880:intron | 30.0% |
| TAATGCATGGAAAGTTTGAT+AGG | + | chr8_2:45050238-45050257 | Msa1249880:intron | 30.0% | |
| !!! | ATTTTTTAGGTCTAAAGGTG+AGG | + | chr8_2:45050342-45050361 | Msa1249880:intron | 30.0% |
| ATGTTTATCAGAACTCATGA+AGG | - | chr8_2:45050416-45050435 | None:intergenic | 30.0% | |
| ! | TTCATGAGTTCTGATAAACA+TGG | + | chr8_2:45050415-45050434 | Msa1249880:CDS | 30.0% |
| TATTGAGTGTAGTGTGTATT+CGG | + | chr8_2:45050549-45050568 | Msa1249880:CDS | 30.0% | |
| !! | TATTATATGGGTTGGTAGGT+TGG | - | chr8_2:45044523-45044542 | None:intergenic | 35.0% |
| !! | AGTTGTTGATGGATTAGGAT+CGG | - | chr8_2:45044662-45044681 | None:intergenic | 35.0% |
| !! | ACATGAGTTGTTGATGGATT+AGG | - | chr8_2:45044667-45044686 | None:intergenic | 35.0% |
| TATCATCTTGCTCTCGATAT+TGG | + | chr8_2:45044688-45044707 | Msa1249880:CDS | 35.0% | |
| !! | TCAATTTTGATGGAGATTGG+TGG | + | chr8_2:45044845-45044864 | Msa1249880:intron | 35.0% |
| TCAATTGAAGTCCAATCGTT+CGG | + | chr8_2:45044971-45044990 | Msa1249880:intron | 35.0% | |
| TTCAGCTAGCATTTGAACTA+AGG | - | chr8_2:45045002-45045021 | None:intergenic | 35.0% | |
| TAGCACTTGTGATCAACAAT+AGG | + | chr8_2:45045292-45045311 | Msa1249880:intron | 35.0% | |
| TAGAAGGATTATGGTTCAAC+AGG | + | chr8_2:45045356-45045375 | Msa1249880:intron | 35.0% | |
| TATGAAGGTTGAAGTGATCA+TGG | + | chr8_2:45045446-45045465 | Msa1249880:intron | 35.0% | |
| !! | TTATTGTTGAGAATGGGTTG+TGG | + | chr8_2:45045508-45045527 | Msa1249880:intron | 35.0% |
| !! | TATTGTTGAGAATGGGTTGT+GGG | + | chr8_2:45045509-45045528 | Msa1249880:intron | 35.0% |
| TTCTTAGACTAGAAAACCGT+CGG | + | chr8_2:45045795-45045814 | Msa1249880:intron | 35.0% | |
| AATGTGGGAAACAAACACAA+TGG | - | chr8_2:45045834-45045853 | None:intergenic | 35.0% | |
| CTAGATTAAGATAGTCTGCA+AGG | - | chr8_2:45045916-45045935 | None:intergenic | 35.0% | |
| CAGACTATCTTAATCTAGTG+AGG | + | chr8_2:45045918-45045937 | Msa1249880:intron | 35.0% | |
| ! | ACGGTATTATTTGGGTTTCT+TGG | + | chr8_2:45046048-45046067 | Msa1249880:intron | 35.0% |
| AATGTTCTCTGTCTGTTGAT+AGG | + | chr8_2:45046079-45046098 | Msa1249880:intron | 35.0% | |
| !! | TGATTATTTTGTTGACGGTG+AGG | + | chr8_2:45046138-45046157 | Msa1249880:CDS | 35.0% |
| !! | GATTTCTCTGAAGTGTTTCT+AGG | - | chr8_2:45046175-45046194 | None:intergenic | 35.0% |
| ! | TTGAGCTTTCCTTTAAGAAC+AGG | - | chr8_2:45046217-45046236 | None:intergenic | 35.0% |
| GACAAAGACTATCAAGTATC+AGG | - | chr8_2:45046350-45046369 | None:intergenic | 35.0% | |
| ! | TTGTAACTGGTGATGAATTC+AGG | + | chr8_2:45046444-45046463 | Msa1249880:intron | 35.0% |
| ! | ATAGATATTGGTTGACTTCC+GGG | - | chr8_2:45046489-45046508 | None:intergenic | 35.0% |
| GGACACAAATTCAATAGCTA+AGG | - | chr8_2:45046682-45046701 | None:intergenic | 35.0% | |
| TAGCTATTGAATTTGTGTCC+TGG | + | chr8_2:45046682-45046701 | Msa1249880:intron | 35.0% | |
| TCTTGACAAGGAAGATGAAA+TGG | + | chr8_2:45046993-45047012 | Msa1249880:CDS | 35.0% | |
| TTGAACGAATGGCAGAAAAA+TGG | - | chr8_2:45047148-45047167 | None:intergenic | 35.0% | |
| GGCCATAAAACTAATCAATG+TGG | - | chr8_2:45047217-45047236 | None:intergenic | 35.0% | |
| ! | CTTTGAGAATTTCGCAATAC+AGG | + | chr8_2:45047274-45047293 | Msa1249880:intron | 35.0% |
| TTGATCACCCATATAGGTAT+AGG | - | chr8_2:45047348-45047367 | None:intergenic | 35.0% | |
| ATACCTATATGGGTGATCAA+AGG | + | chr8_2:45047348-45047367 | Msa1249880:CDS | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr8_2:45047962-45047981 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr8_2:45047962-45047981 | Msa1249880:intron | 35.0% | |
| TTCATATAGGTGGAAGGAAA+TGG | + | chr8_2:45048094-45048113 | Msa1249880:intron | 35.0% | |
| !! | AGCTTTTAACTCAATGCAAG+AGG | + | chr8_2:45048176-45048195 | Msa1249880:CDS | 35.0% |
| GTTAACATCAATGCACTTTG+TGG | + | chr8_2:45048260-45048279 | Msa1249880:intron | 35.0% | |
| GTTGCTGGAATTAAGTTATC+AGG | + | chr8_2:45048304-45048323 | Msa1249880:CDS | 35.0% | |
| AAAGAGGTAGATATGCTTGT+CGG | + | chr8_2:45048335-45048354 | Msa1249880:CDS | 35.0% | |
| ATGCTTGTCGGAGATATTTA+TGG | + | chr8_2:45048347-45048366 | Msa1249880:CDS | 35.0% | |
| !! | ACTGCAATAGCATCTAGTTT+TGG | + | chr8_2:45048541-45048560 | Msa1249880:CDS | 35.0% |
| GAATATTGTTGTGTGCACAA+TGG | + | chr8_2:45049011-45049030 | Msa1249880:intron | 35.0% | |
| CTACTGAAATCAGTGCAAAA+TGG | - | chr8_2:45049047-45049066 | None:intergenic | 35.0% | |
| !!! | CATTTTGCACTGATTTCAGT+AGG | + | chr8_2:45049045-45049064 | Msa1249880:intron | 35.0% |
| GGCAGAGTTAAATATGATTG+TGG | + | chr8_2:45049066-45049085 | Msa1249880:intron | 35.0% | |
| ATGTTAGGTTAGAGAATGGT+AGG | - | chr8_2:45049243-45049262 | None:intergenic | 35.0% | |
| ! | TACTTAAATGCCCTTCGTTT+TGG | + | chr8_2:45049586-45049605 | Msa1249880:CDS | 35.0% |
| ! | ACTTAAATGCCCTTCGTTTT+GGG | + | chr8_2:45049587-45049606 | Msa1249880:CDS | 35.0% |
| !!! | CTGAAGAGGATATTTTTTGG+TGG | + | chr8_2:45049610-45049629 | Msa1249880:CDS | 35.0% |
| TGAACACAAAAGATAGCCTT+CGG | + | chr8_2:45049890-45049909 | Msa1249880:intron | 35.0% | |
| !! | CTCTCATTTGCTATAATGCA+TGG | + | chr8_2:45050225-45050244 | Msa1249880:intron | 35.0% |
| ACATGGCCTCAAAGAATTAT+TGG | + | chr8_2:45050432-45050451 | Msa1249880:CDS | 35.0% | |
| GCTTGACCAATAATTCTTTG+AGG | - | chr8_2:45050441-45050460 | None:intergenic | 35.0% | |
| AGAATTATTGGTCAAGCAAG+AGG | + | chr8_2:45050444-45050463 | Msa1249880:CDS | 35.0% | |
| ATCAACAGCGAAAGTTAACT+TGG | - | chr8_2:45050485-45050504 | None:intergenic | 35.0% | |
| CAACTAGATGGTGAATTGTT+TGG | + | chr8_2:45050517-45050536 | Msa1249880:CDS | 35.0% | |
| TTCGGCTTAGATGATGTTAT+TGG | + | chr8_2:45050567-45050586 | Msa1249880:exon | 35.0% | |
| !! | GATGGATTAGGATCGGAATT+TGG | - | chr8_2:45044655-45044674 | None:intergenic | 40.0% |
| !! | GCTATTTTCGTAAGCTCTCT+CGG | + | chr8_2:45045162-45045181 | Msa1249880:intron | 40.0% |
| AGCTCTTTCAAATGCACTCT+TGG | + | chr8_2:45045237-45045256 | Msa1249880:intron | 40.0% | |
| !! | ATTGTTGAGAATGGGTTGTG+GGG | + | chr8_2:45045510-45045529 | Msa1249880:intron | 40.0% |
| CGTACTCATTAAAAGCCAGA+CGG | - | chr8_2:45046031-45046050 | None:intergenic | 40.0% | |
| !!! | CGTCTGGCTTTTAATGAGTA+CGG | + | chr8_2:45046029-45046048 | Msa1249880:intron | 40.0% |
| !! | TTATTTTGTTGACGGTGAGG+CGG | + | chr8_2:45046141-45046160 | Msa1249880:CDS | 40.0% |
| CAGAGAAATCAAAAGGCAGA+AGG | + | chr8_2:45046185-45046204 | Msa1249880:CDS | 40.0% | |
| AGGAACCATCCTGTTCTTAA+AGG | + | chr8_2:45046205-45046224 | Msa1249880:CDS | 40.0% | |
| ! | GCTTTCCTTTAAGAACAGGA+TGG | - | chr8_2:45046213-45046232 | None:intergenic | 40.0% |
| AAGACCATGAAACTTCATCC+TGG | + | chr8_2:45046286-45046305 | Msa1249880:CDS | 40.0% | |
| GCAGAACAGTAACAAGAATG+TGG | - | chr8_2:45046408-45046427 | None:intergenic | 40.0% | |
| ! | TGGTGATGAATTCAGGTAGT+CGG | + | chr8_2:45046451-45046470 | Msa1249880:intron | 40.0% |
| ! | ACCTATCTGCAGAAGCATAA+GGG | - | chr8_2:45046572-45046591 | None:intergenic | 40.0% |
| TTGCTTCAGATCATAGCAGA+GGG | - | chr8_2:45046651-45046670 | None:intergenic | 40.0% | |
| ATTGCTTCAGATCATAGCAG+AGG | - | chr8_2:45046652-45046671 | None:intergenic | 40.0% | |
| GGAATATATGTATGCTGACC+AGG | - | chr8_2:45046703-45046722 | None:intergenic | 40.0% | |
| ! | ATCCCTAGCCTTTCTTTGAA+GGG | - | chr8_2:45046970-45046989 | None:intergenic | 40.0% |
| ! | TATCCCTAGCCTTTCTTTGA+AGG | - | chr8_2:45046971-45046990 | None:intergenic | 40.0% |
| GCTAGGGATAAATCTTGACA+AGG | + | chr8_2:45046981-45047000 | Msa1249880:CDS | 40.0% | |
| !! | GAAATGGATTGTCTTGTTGC+AGG | + | chr8_2:45047009-45047028 | Msa1249880:CDS | 40.0% |
| ! | AGGAGCAAATTTTCTTCTCG+AGG | + | chr8_2:45047029-45047048 | Msa1249880:CDS | 40.0% |
| ! | GCAAATTTTCTTCTCGAGGT+AGG | + | chr8_2:45047033-45047052 | Msa1249880:intron | 40.0% |
| CCATATAGGTATAGGCTTCT+CGG | - | chr8_2:45047340-45047359 | None:intergenic | 40.0% | |
| CGAGAAGCCTATACCTATAT+GGG | + | chr8_2:45047338-45047357 | Msa1249880:CDS | 40.0% | |
| TTGCCTTTGATCACCCATAT+AGG | - | chr8_2:45047354-45047373 | None:intergenic | 40.0% | |
| ! | ATCTGGTGTTAGCATGATCA+AGG | + | chr8_2:45047427-45047446 | Msa1249880:CDS | 40.0% |
| TGGGTTCTATATAGACTCAC+AGG | + | chr8_2:45048237-45048256 | Msa1249880:intron | 40.0% | |
| GGGTTCTATATAGACTCACA+GGG | + | chr8_2:45048238-45048257 | Msa1249880:intron | 40.0% | |
| TTATCAGGGCAACAACAAAG+AGG | + | chr8_2:45048319-45048338 | Msa1249880:CDS | 40.0% | |
| CTTGTCGGAGATATTTATGG+TGG | + | chr8_2:45048350-45048369 | Msa1249880:CDS | 40.0% | |
| ! | CGGAGATATTTATGGTGGAA+TGG | + | chr8_2:45048355-45048374 | Msa1249880:CDS | 40.0% |
| AGATTACAGACCCGAAGATA+TGG | + | chr8_2:45048594-45048613 | Msa1249880:CDS | 40.0% | |
| AAGAGATCGAGCCATATCTT+CGG | - | chr8_2:45048608-45048627 | None:intergenic | 40.0% | |
| CAGTAGCATTTGGAAATCCA+CGG | - | chr8_2:45048673-45048692 | None:intergenic | 40.0% | |
| !! | AGGTATCGAGACATGCAAAA+AGG | - | chr8_2:45048771-45048790 | None:intergenic | 40.0% |
| ATGTCTCGATACCTGCAATT+TGG | + | chr8_2:45048777-45048796 | Msa1249880:intron | 40.0% | |
| ! | CTATACTAGGCGTCAGTTTT+CGG | + | chr8_2:45049189-45049208 | Msa1249880:intron | 40.0% |
| ! | GTCAGTTTTCGGTATCTAAG+AGG | + | chr8_2:45049200-45049219 | Msa1249880:intron | 40.0% |
| TTAGAGAATGGTAGGAAGAG+AGG | - | chr8_2:45049235-45049254 | None:intergenic | 40.0% | |
| GCAGATGTTAGGTTAGAGAA+TGG | - | chr8_2:45049247-45049266 | None:intergenic | 40.0% | |
| CTTTGTGAAGAGGAAACCAT+TGG | - | chr8_2:45049405-45049424 | None:intergenic | 40.0% | |
| CAATGGTTTCCTCTTCACAA+AGG | + | chr8_2:45049403-45049422 | Msa1249880:intron | 40.0% | |
| AGAAGTGATCCTTTGTGAAG+AGG | - | chr8_2:45049415-45049434 | None:intergenic | 40.0% | |
| !!! | GGGCTGAAGAGGATATTTTT+TGG | + | chr8_2:45049607-45049626 | Msa1249880:CDS | 40.0% |
| !!! | TCAGAGGCATCCTTTTACAA+TGG | + | chr8_2:45049642-45049661 | Msa1249880:CDS | 40.0% |
| !! | AATTGGCAGTTGATGAACAG+AGG | - | chr8_2:45049712-45049731 | None:intergenic | 40.0% |
| CTGTTCATCAACTGCCAATT+TGG | + | chr8_2:45049712-45049731 | Msa1249880:intron | 40.0% | |
| ! | ATGGATTATGTTGTGGGACA+TGG | + | chr8_2:45049750-45049769 | Msa1249880:intron | 40.0% |
| GAACACAAAAGATAGCCTTC+GGG | + | chr8_2:45049891-45049910 | Msa1249880:intron | 40.0% | |
| CTGATCATGGTCATGTTTGT+CGG | - | chr8_2:45049923-45049942 | None:intergenic | 40.0% | |
| AAGCCAACGTTTATCTACGT+TGG | + | chr8_2:45050076-45050095 | Msa1249880:intron | 40.0% | |
| ATGCCAACGTAGATAAACGT+TGG | - | chr8_2:45050082-45050101 | None:intergenic | 40.0% | |
| GGAAGCAAGTTATGGTTTGA+AGG | + | chr8_2:45050162-45050181 | Msa1249880:intron | 40.0% | |
| TAACTTGGTCGGACTTTGTT+GGG | - | chr8_2:45050470-45050489 | None:intergenic | 40.0% | |
| ! | TTAACTTGGTCGGACTTTGT+TGG | - | chr8_2:45050471-45050490 | None:intergenic | 40.0% |
| ! | ACAGCGAAAGTTAACTTGGT+CGG | - | chr8_2:45050481-45050500 | None:intergenic | 40.0% |
| ! | TTCGCTGTTGATAAGATGCA+TGG | + | chr8_2:45050493-45050512 | Msa1249880:CDS | 40.0% |
| AAGATGCATGGTCAACTAGA+TGG | + | chr8_2:45050505-45050524 | Msa1249880:CDS | 40.0% | |
| CATCTTGCTCTCGATATTGG+AGG | + | chr8_2:45044691-45044710 | Msa1249880:CDS | 45.0% | |
| CTAAGGTTCTACCGAACGAT+TGG | - | chr8_2:45044985-45045004 | None:intergenic | 45.0% | |
| ATCATTGATCCGCTTCTCTG+TGG | + | chr8_2:45045025-45045044 | Msa1249880:intron | 45.0% | |
| TCATTGATCCGCTTCTCTGT+GGG | + | chr8_2:45045026-45045045 | Msa1249880:intron | 45.0% | |
| TGGTAATCTTACTCGACCGA+CGG | - | chr8_2:45045814-45045833 | None:intergenic | 45.0% | |
| ! | TGCAATGTAAAGTGTCCGTC+TGG | + | chr8_2:45046013-45046032 | Msa1249880:intron | 45.0% |
| ACCATGAAACTTCATCCTGG+AGG | + | chr8_2:45046289-45046308 | Msa1249880:CDS | 45.0% | |
| ACCTCCAGGATGAAGTTTCA+TGG | - | chr8_2:45046293-45046312 | None:intergenic | 45.0% | |
| AAAATTCTCCACACACCTCC+AGG | - | chr8_2:45046307-45046326 | None:intergenic | 45.0% | |
| TCCCTTATGCTTCTGCAGAT+AGG | + | chr8_2:45046568-45046587 | Msa1249880:intron | 45.0% | |
| ! | CACCTATCTGCAGAAGCATA+AGG | - | chr8_2:45046573-45046592 | None:intergenic | 45.0% |
| CATAGCAGAGGGACTCAAAT+TGG | - | chr8_2:45046640-45046659 | None:intergenic | 45.0% | |
| GCACATGCAGATGTAGAAGT+TGG | + | chr8_2:45046797-45046816 | Msa1249880:intron | 45.0% | |
| TTTGTATGAACCACCACCTG+TGG | - | chr8_2:45046938-45046957 | None:intergenic | 45.0% | |
| ATGCAGACCCCTTCAAAGAA+AGG | + | chr8_2:45046959-45046978 | Msa1249880:CDS | 45.0% | |
| ACCCCTTCAAAGAAAGGCTA+GGG | + | chr8_2:45046965-45046984 | Msa1249880:CDS | 45.0% | |
| ! | TCCCTAGCCTTTCTTTGAAG+GGG | - | chr8_2:45046969-45046988 | None:intergenic | 45.0% |
| CCGAGAAGCCTATACCTATA+TGG | + | chr8_2:45047337-45047356 | Msa1249880:CDS | 45.0% | |
| GGAAAGTTTGAGCGAGTTAG+TGG | + | chr8_2:45048115-45048134 | Msa1249880:CDS | 45.0% | |
| CGAGTTAGTGGAACGAGTAT+AGG | + | chr8_2:45048127-45048146 | Msa1249880:CDS | 45.0% | |
| GTTAGTGGAACGAGTATAGG+TGG | + | chr8_2:45048130-45048149 | Msa1249880:CDS | 45.0% | |
| !! | TATAGGTGGAGGCACTTTCT+GGG | + | chr8_2:45048144-45048163 | Msa1249880:CDS | 45.0% |
| ! | CTTCAGCTTTGATGAGTTGC+TGG | + | chr8_2:45048289-45048308 | Msa1249880:CDS | 45.0% |
| !! | TGGTGGAATGGACTATGCAA+AGG | + | chr8_2:45048367-45048386 | Msa1249880:CDS | 45.0% |
| AGAGATCGAGCCATATCTTC+GGG | - | chr8_2:45048607-45048626 | None:intergenic | 45.0% | |
| GAGTAGTGCACAGTAGCATT+TGG | - | chr8_2:45048683-45048702 | None:intergenic | 45.0% | |
| CGAAAACTGACGCCTAGTAT+AGG | - | chr8_2:45049191-45049210 | None:intergenic | 45.0% | |
| CGACAAACATGACCATGATC+AGG | + | chr8_2:45049921-45049940 | Msa1249880:intron | 45.0% | |
| !! | TTTAGCACATTCGGGTTAGC+AGG | + | chr8_2:45050141-45050160 | Msa1249880:intron | 45.0% |
| GGTTAGCAGGAAGCAAGTTA+TGG | + | chr8_2:45050154-45050173 | Msa1249880:intron | 45.0% | |
| CTCAGAAGCAAGTGTCAAGT+GGG | - | chr8_2:45050273-45050292 | None:intergenic | 45.0% | |
| ACTCAGAAGCAAGTGTCAAG+TGG | - | chr8_2:45050274-45050293 | None:intergenic | 45.0% | |
| AGGCGAAAGCAATGTTCTTG+CGG | + | chr8_2:45050362-45050381 | Msa1249880:CDS | 45.0% | |
| TTGCGGCATGAAGGATTTCT+TGG | + | chr8_2:45050379-45050398 | Msa1249880:CDS | 45.0% | |
| GAAGGATTTCTTGGAGCTGT+AGG | + | chr8_2:45050388-45050407 | Msa1249880:CDS | 45.0% | |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr8_2:45047562-45047581 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr8_2:45047563-45047582 | None:intergenic | 5.0% |
| !!! | TTTATTACTTATTTATTTTT+AGG | + | chr8_2:45048202-45048221 | Msa1249880:intron | 5.0% |
| ACAGCTTCACTGCATTCCTC+CGG | - | chr8_2:45045053-45045072 | None:intergenic | 50.0% | |
| ! | ATGGGTTGTGGGGTTGACAT+TGG | + | chr8_2:45045520-45045539 | Msa1249880:intron | 50.0% |
| ! | AACTTCATCCTGGAGGTGTG+TGG | + | chr8_2:45046296-45046315 | Msa1249880:intron | 50.0% |
| AGTCGGCAGCAAGAAAATCC+CGG | + | chr8_2:45046468-45046487 | Msa1249880:CDS | 50.0% | |
| ACCATTGTTGTGAAGGCCAC+AGG | + | chr8_2:45046919-45046938 | Msa1249880:intron | 50.0% | |
| ACCTGTGGCCTTCACAACAA+TGG | - | chr8_2:45046923-45046942 | None:intergenic | 50.0% | |
| ATTGTTGTGAAGGCCACAGG+TGG | + | chr8_2:45046922-45046941 | Msa1249880:intron | 50.0% | |
| GACCCCTTCAAAGAAAGGCT+AGG | + | chr8_2:45046964-45046983 | Msa1249880:CDS | 50.0% | |
| AGTGGAACGAGTATAGGTGG+AGG | + | chr8_2:45048133-45048152 | Msa1249880:CDS | 50.0% | |
| !! | GTATAGGTGGAGGCACTTTC+TGG | + | chr8_2:45048143-45048162 | Msa1249880:CDS | 50.0% |
| !! | ATAGGTGGAGGCACTTTCTG+GGG | + | chr8_2:45048145-45048164 | Msa1249880:CDS | 50.0% |
| GACAGGTCAGTATTGTACCG+TGG | + | chr8_2:45048653-45048672 | Msa1249880:intron | 50.0% | |
| CCTCTTCAGCCCAAAACGAA+GGG | - | chr8_2:45049599-45049618 | None:intergenic | 50.0% | |
| TCCTCTTCAGCCCAAAACGA+AGG | - | chr8_2:45049600-45049619 | None:intergenic | 50.0% | |
| GTTCAGACGTAGCCTGATCA+TGG | - | chr8_2:45049936-45049955 | None:intergenic | 50.0% | |
| AGGCTACGTCTGAACTTCTC+AGG | + | chr8_2:45049941-45049960 | Msa1249880:intron | 50.0% | |
| GCAATGTTCTTGCGGCATGA+AGG | + | chr8_2:45050370-45050389 | Msa1249880:CDS | 50.0% | |
| !! | GGAGGCACTTTCTGGGGTTT+AGG | + | chr8_2:45048151-45048170 | Msa1249880:CDS | 55.0% |
| !! | CCCTTCGTTTTGGGCTGAAG+AGG | + | chr8_2:45049596-45049615 | Msa1249880:CDS | 55.0% |
| GTTTGTCGGTGACTTCCCGA+AGG | - | chr8_2:45049909-45049928 | None:intergenic | 55.0% | |
| GATCCGCTTCTCTGTGGGAC+CGG | + | chr8_2:45045031-45045050 | Msa1249880:intron | 60.0% | |
| GTTGTGAAGGCCACAGGTGG+TGG | + | chr8_2:45046925-45046944 | Msa1249880:intron | 60.0% | |
| CCTCCGGTCCCACAGAGAAG+CGG | - | chr8_2:45045037-45045056 | None:intergenic | 65.0% | |
| CCGCTTCTCTGTGGGACCGG+AGG | + | chr8_2:45045034-45045053 | Msa1249880:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 45044513 | 45050774 | 45044513 | ID=Msa1249880;Name=Msa1249880 |
| chr8_2 | mRNA | 45044513 | 45050774 | 45044513 | ID=Msa1249880-mRNA-1;Parent=Msa1249880;Name=Msa1249880-mRNA-1;_AED=0.11;_eAED=0.11;_QI=112|0.88|0.9|1|1|1|10|198|415 |
| chr8_2 | exon | 45044513 | 45044712 | 45044513 | ID=Msa1249880-mRNA-1:exon:13619;Parent=Msa1249880-mRNA-1 |
| chr8_2 | exon | 45046101 | 45046310 | 45046101 | ID=Msa1249880-mRNA-1:exon:13620;Parent=Msa1249880-mRNA-1 |
| chr8_2 | exon | 45046466 | 45046512 | 45046466 | ID=Msa1249880-mRNA-1:exon:13621;Parent=Msa1249880-mRNA-1 |
| chr8_2 | exon | 45046934 | 45047050 | 45046934 | ID=Msa1249880-mRNA-1:exon:13622;Parent=Msa1249880-mRNA-1 |
| chr8_2 | exon | 45047329 | 45047448 | 45047329 | ID=Msa1249880-mRNA-1:exon:13623;Parent=Msa1249880-mRNA-1 |
| chr8_2 | exon | 45048103 | 45048197 | 45048103 | ID=Msa1249880-mRNA-1:exon:13624;Parent=Msa1249880-mRNA-1 |
| chr8_2 | exon | 45048289 | 45048388 | 45048289 | ID=Msa1249880-mRNA-1:exon:13625;Parent=Msa1249880-mRNA-1 |
| chr8_2 | exon | 45048526 | 45048657 | 45048526 | ID=Msa1249880-mRNA-1:exon:13626;Parent=Msa1249880-mRNA-1 |
| chr8_2 | exon | 45049580 | 45049692 | 45049580 | ID=Msa1249880-mRNA-1:exon:13627;Parent=Msa1249880-mRNA-1 |
| chr8_2 | exon | 45050351 | 45050774 | 45050351 | ID=Msa1249880-mRNA-1:exon:13628;Parent=Msa1249880-mRNA-1 |
| chr8_2 | five_prime_UTR | 45044513 | 45044624 | 45044513 | ID=Msa1249880-mRNA-1:five_prime_utr;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45044625 | 45044712 | 45044625 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45046101 | 45046310 | 45046101 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45046466 | 45046512 | 45046466 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45046934 | 45047050 | 45046934 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45047329 | 45047448 | 45047329 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45048103 | 45048197 | 45048103 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45048289 | 45048388 | 45048289 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45048526 | 45048657 | 45048526 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45049580 | 45049692 | 45049580 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | CDS | 45050351 | 45050576 | 45050351 | ID=Msa1249880-mRNA-1:cds;Parent=Msa1249880-mRNA-1 |
| chr8_2 | three_prime_UTR | 45050577 | 45050774 | 45050577 | ID=Msa1249880-mRNA-1:three_prime_utr;Parent=Msa1249880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
