AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0562570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562570 MtrunA17_Chr8g0376011 96.005 801 26 2 1 795 1 801 0.0 1591
Msa0562570 MtrunA17_Chr4g0019561 36.610 702 366 17 143 791 519 1194 1.38e-120 391
Msa0562570 MtrunA17_Chr5g0447621 37.416 449 265 7 328 765 79 522 1.21e-90 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562570 AT1G14740.1 51.644 821 283 27 1 795 1 733 0.0 700
Msa0562570 AT3G63500.1 35.682 667 354 19 171 792 247 883 3.15e-109 354
Msa0562570 AT3G63500.2 35.682 667 354 19 171 792 522 1158 2.18e-107 355
Msa0562570 AT3G63500.3 35.682 667 354 19 171 792 522 1158 2.18e-107 355
Msa0562570 AT5G48160.2 39.101 445 247 8 337 767 93 527 8.30e-90 294
Msa0562570 AT5G48160.1 39.101 445 247 8 337 767 93 527 8.30e-90 294
Msa0562570 AT3G07780.3 37.607 468 263 10 310 760 63 518 2.86e-85 282
Msa0562570 AT3G07780.1 37.607 468 263 10 310 760 63 518 2.86e-85 282
Msa0562570 AT3G07780.2 37.607 468 263 10 310 760 74 529 5.26e-85 281

Find 198 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTGTTAGGGAAATTATT+TGG 0.126528 4_1:-62514446 Msa0562570:CDS
GGTGGGTCCAACCAGGTTTC+TGG 0.135815 4_1:-62515296 Msa0562570:CDS
ACGTTTGTTTGGATCAAAAT+TGG 0.188283 4_1:+62515373 None:intergenic
TGTATTGAAGAACTAGATTT+TGG 0.193389 4_1:+62512326 None:intergenic
GAAGTTCTGCTTTGGTATTC+TGG 0.199668 4_1:-62511767 Msa0562570:three_prime_UTR
AATTTATAGATTCAAGATTT+TGG 0.200472 4_1:-62511713 Msa0562570:three_prime_UTR
CCGGTTTGATGAGCTTCTTC+TGG 0.202108 4_1:+62513956 None:intergenic
CCTTGAATCTCTTTCAATCT+TGG 0.204571 4_1:+62515224 None:intergenic
GGAAAACATGGCAAACTTTC+CGG 0.213766 4_1:-62512417 Msa0562570:CDS
CTGAAAGAGAGAGTAATATT+AGG 0.226791 4_1:-62515070 Msa0562570:CDS
CAAATCAAGATGGAGGAAAA+TGG 0.235949 4_1:-62515151 Msa0562570:CDS
CATAGGTTTGAGACTCATTC+AGG 0.239156 4_1:-62514555 Msa0562570:CDS
CGAGTAAAGACGATCAAATT+TGG 0.254395 4_1:-62514767 Msa0562570:CDS
CTTGAATCTCTTTCAATCTT+GGG 0.262464 4_1:+62515225 None:intergenic
CAAAGGTGGAATTGAAAGTT+TGG 0.262902 4_1:-62512174 Msa0562570:CDS
GTTGACTAATTCGTCTTTCT+TGG 0.263803 4_1:+62514332 None:intergenic
GGTAGCCTTGATGTCTTCTT+TGG 0.277127 4_1:+62512250 None:intergenic
TTCTCTCAAGCCTGCTTTGA+AGG 0.277570 4_1:+62514310 None:intergenic
TCTTTGTCCTGATCATCTTC+TGG 0.278880 4_1:+62512069 None:intergenic
GGGTCTTGATAACTTACTTC+TGG 0.293426 4_1:+62515394 None:intergenic
CAAAACCAGAGAGGATTGTT+AGG 0.305807 4_1:-62514458 Msa0562570:CDS
GTTTAGATGGTGGTGGAAAT+AGG 0.307485 4_1:-62514488 Msa0562570:CDS
CATGTCTTGCGCAAAGGATT+GGG 0.325139 4_1:-62513833 Msa0562570:CDS
AACAGGAAGCAAACTCTTGC+AGG 0.328838 4_1:+62514131 None:intergenic
GGAAACGCAGAGGAGGAAAT+TGG 0.331271 4_1:-62511985 Msa0562570:CDS
TCTCTCTTGGCCATGATTGC+TGG 0.332436 4_1:-62515461 Msa0562570:exon
AAATTGAAAATCATCCATTC+TGG 0.334409 4_1:+62511738 None:intergenic
GATTGTTAGGGAAATTATTT+GGG 0.334809 4_1:-62514445 Msa0562570:CDS
GAAATACAGTTTCATTGTAT+TGG 0.337353 4_1:-62513901 Msa0562570:CDS
TCATCTGGGTAACGTTTGTT+TGG 0.346007 4_1:+62515362 None:intergenic
GGAGAGCATTGTTCGGATAA+AGG 0.349420 4_1:-62512153 Msa0562570:CDS
TCAAAAGGGTAAAGAGGTTA+TGG 0.350376 4_1:-62515186 Msa0562570:CDS
TGATGGTTTGTTGGCGAGAA+TGG 0.357589 4_1:-62511892 Msa0562570:CDS
GCCTTGATGTCTTCTTTGGA+TGG 0.364546 4_1:+62512254 None:intergenic
CCTCCTTGCTTCATCTGCCT+TGG 0.368229 4_1:+62512106 None:intergenic
CAGACACTGGATCTTTCTCT+TGG 0.372476 4_1:-62515029 Msa0562570:CDS
CTAACACCAGTTCCATTTCC+AGG 0.389427 4_1:+62514666 None:intergenic
TCATGTCTTGCGCAAAGGAT+TGG 0.390416 4_1:-62513834 Msa0562570:CDS
AGATCCAGTGTCTGAACCTT+TGG 0.396783 4_1:+62515038 None:intergenic
CAATCAAAGTTCAAACAAAT+AGG 0.398951 4_1:+62514048 None:intergenic
GAAGAAATTCTGAGAGTATG+AGG 0.402150 4_1:-62514521 Msa0562570:CDS
TGAAAGAGAGAGTAATATTA+GGG 0.403143 4_1:-62515069 Msa0562570:CDS
GCTATGATTGTGCTTGGTTT+CGG 0.404943 4_1:+62515582 None:intergenic
CGTTTGTTTGGATCAAAATT+GGG 0.410561 4_1:+62515374 None:intergenic
CAGCGTGTCCTTTGGAAGGC+TGG 0.422697 4_1:+62512355 None:intergenic
AATTTATTGAAGTTCTGCTT+TGG 0.423941 4_1:-62511775 Msa0562570:three_prime_UTR
AAAATGCAAGATGAAATTGA+TGG 0.424314 4_1:-62511909 Msa0562570:CDS
CACTGGTGCCATGCTGTTTG+TGG 0.425017 4_1:-62513982 Msa0562570:CDS
AAATTGCATGATCTGATTGC+AGG 0.425913 4_1:+62513669 None:intergenic
CATAGCAGGTTTAAGCCAAT+TGG 0.429977 4_1:-62514714 Msa0562570:CDS
CCTTGATGTCTTCTTTGGAT+GGG 0.432069 4_1:+62512255 None:intergenic
TCCGACATGGGTGGTGTTGG+TGG 0.433368 4_1:-62515314 Msa0562570:CDS
GTCTTCTTTGGATGGGGCAC+CGG 0.435369 4_1:+62512262 None:intergenic
TGGTGATGGTATTGTTGCTT+TGG 0.436883 4_1:-62514694 Msa0562570:CDS
GGAAGAGACAGCGTGTCCTT+TGG 0.438392 4_1:+62512347 None:intergenic
TGAAAGCTTTCTGAGTCAAA+AGG 0.442484 4_1:-62515201 Msa0562570:CDS
GTGCAAGTAATACTTGTAGT+TGG 0.443206 4_1:-62514026 Msa0562570:CDS
GAACATGCATCGGAAATGTT+TGG 0.443604 4_1:-62513874 Msa0562570:CDS
GCTTTGGCAAATCCTGGAAA+TGG 0.447587 4_1:-62514678 Msa0562570:CDS
CCGAGCTTGAAAGGACCTTC+TGG 0.449486 4_1:-62513931 Msa0562570:CDS
AAATCAAGATGGAGGAAAAT+GGG 0.449888 4_1:-62515150 Msa0562570:CDS
TATTCTACTAGGCCACATTC+CGG 0.450993 4_1:-62512281 Msa0562570:CDS
CCAGAAGAAGCTCATCAAAC+CGG 0.451534 4_1:-62513956 Msa0562570:CDS
ACCCTTTGAAAGTGTCTCCT+TGG 0.451962 4_1:+62514275 None:intergenic
CTTGATGTCTTCTTTGGATG+GGG 0.454272 4_1:+62512256 None:intergenic
TGGTGTTGGTGGGTCCAACC+AGG 0.455081 4_1:-62515303 Msa0562570:CDS
GATTCTAGTCGCTGTAAAGA+TGG 0.456916 4_1:-62514235 Msa0562570:CDS
AGACTCATTCAGGGGATTCA+AGG 0.459390 4_1:-62514545 Msa0562570:CDS
ATTTCCCTAACAATCCTCTC+TGG 0.459574 4_1:+62514453 None:intergenic
TGGAGGCAACAAAGCAGCAT+TGG 0.463387 4_1:-62511872 Msa0562570:CDS
CTTTGGAAGGCTGGCTTGAG+AGG 0.464312 4_1:+62512364 None:intergenic
GGAGGCAACAAAGCAGCATT+GGG 0.465244 4_1:-62511871 Msa0562570:CDS
CAGGTTTCTGGTGGTAACTC+AGG 0.465258 4_1:-62515284 Msa0562570:CDS
CTGAATTGCCTGCTAGACAT+AGG 0.465919 4_1:-62514572 Msa0562570:CDS
TTTCCTCCTCTGCGTTTCCT+CGG 0.466448 4_1:+62511989 None:intergenic
ATTGTTGCTTTGGCAAATCC+TGG 0.468736 4_1:-62514684 Msa0562570:CDS
AAAACCAGAGAGGATTGTTA+GGG 0.469024 4_1:-62514457 Msa0562570:CDS
GAACGAAGAGAGAGAAACTA+AGG 0.469538 4_1:+62515495 None:intergenic
AAAGGGTACTAAAGTTCAGT+TGG 0.475384 4_1:-62514259 Msa0562570:CDS
AAGGGTTCCAGAAGATGATC+AGG 0.477139 4_1:-62512076 Msa0562570:CDS
AGATGAAATTGATGGTTTGT+TGG 0.477510 4_1:-62511901 Msa0562570:CDS
CCAAGATTGAAAGAGATTCA+AGG 0.478614 4_1:-62515224 Msa0562570:CDS
TTACAGTCACAATCATCAAC+AGG 0.485873 4_1:+62514114 None:intergenic
CTAATGGTTCTGTGCATAGC+AGG 0.488838 4_1:-62514728 Msa0562570:CDS
AAGATCTTTACCAGCAATCA+TGG 0.490097 4_1:+62515451 None:intergenic
CAAATTTGGAACTGTGGTGA+AGG 0.492513 4_1:-62514753 Msa0562570:CDS
AAACCGGGACCGAGCTTGAA+AGG 0.493130 4_1:-62513940 Msa0562570:CDS
AGTAATACTTGTAGTTGGAT+TGG 0.496287 4_1:-62514021 Msa0562570:CDS
TTCTTTAACTCGTAATTCAA+CGG 0.496407 4_1:-62514808 Msa0562570:CDS
GGTCCTTTCAAGCTCGGTCC+CGG 0.497493 4_1:+62513937 None:intergenic
TCTGAGTCAAAAGGGTAAAG+AGG 0.498142 4_1:-62515192 Msa0562570:CDS
AAAGTTTGGAGAGCATTGTT+CGG 0.498175 4_1:-62512160 Msa0562570:CDS
AACTGTGGTGAAGGGACTAA+TGG 0.499596 4_1:-62514744 Msa0562570:CDS
GCAAATCCTGGAAATGGAAC+TGG 0.502590 4_1:-62514672 Msa0562570:CDS
GCAACAATACCATCACCAAT+TGG 0.506827 4_1:+62514699 None:intergenic
TATTCTGGTTGTTTCCAGAA+TGG 0.508722 4_1:-62511752 Msa0562570:three_prime_UTR
TTATAATGACTACTATTACC+TGG 0.509349 4_1:+62514630 None:intergenic
GTCTCAAACCTATGTCTAGC+AGG 0.510746 4_1:+62514564 None:intergenic
TTTGAAGGTTTAGATGGTGG+TGG 0.512388 4_1:-62514495 Msa0562570:CDS
TATGAAGTATGAGTAGTTGA+AGG 0.513074 4_1:+62514915 None:intergenic
ATGAGTCGAGCTATTCTACT+AGG 0.513430 4_1:-62512292 Msa0562570:CDS
AAAGCCATTTGAAAATGAAA+AGG 0.513640 4_1:+62514848 None:intergenic
TCAGTTATCTGAGTTGGTAG+AGG 0.514462 4_1:-62514184 Msa0562570:CDS
GTAAGAGAAAGAGAAACATC+AGG 0.514471 4_1:+62515002 None:intergenic
TAATCTTCAGTTATCTGAGT+TGG 0.514763 4_1:-62514190 Msa0562570:CDS
GAAAGCTTTCTGAGTCAAAA+GGG 0.515440 4_1:-62515200 Msa0562570:CDS
AAGATTACCGTACAAGAAGC+TGG 0.518720 4_1:+62514206 None:intergenic
CAGGACAAAGACTGCACAGA+TGG 0.518929 4_1:-62512057 Msa0562570:CDS
GACTCATTCAGGGGATTCAA+GGG 0.521327 4_1:-62514544 Msa0562570:CDS
GGTTTCCACATAGATAACTC+AGG 0.521637 4_1:+62515246 None:intergenic
ATCTGATTGCAGGCTTCTGA+AGG 0.522424 4_1:+62513679 None:intergenic
TCCAAGGAGACACTTTCAAA+GGG 0.522668 4_1:-62514276 Msa0562570:CDS
AGATTTGCTCGGGAAACAAA+GGG 0.525514 4_1:-62514092 Msa0562570:CDS
CTGAGTTACCACCAGAAACC+TGG 0.530099 4_1:+62515285 None:intergenic
TTGGATGGGGCACCGGAATG+TGG 0.530269 4_1:+62512269 None:intergenic
TTCCAAGGAGACACTTTCAA+AGG 0.532886 4_1:-62514277 Msa0562570:CDS
ATGTCTTGCGCAAAGGATTG+GGG 0.535181 4_1:-62513832 Msa0562570:CDS
TGAGTAGTTGAAGGCCTGCT+AGG 0.537933 4_1:+62514924 None:intergenic
TCTGAGAATTCAAATCAAGA+TGG 0.538512 4_1:-62515161 Msa0562570:CDS
AATTAGTCAACCTTCAAAGC+AGG 0.538657 4_1:-62514320 Msa0562570:CDS
GAAGCAAGGAGGGCGGCAGA+AGG 0.540304 4_1:-62512095 Msa0562570:CDS
GAACTGCATTTGAAAACTGA+TGG 0.542360 4_1:-62513736 Msa0562570:CDS
CCAGAAGGTCCTTTCAAGCT+CGG 0.542946 4_1:+62513931 None:intergenic
AGGTTTAAGCCAATTGGTGA+TGG 0.542946 4_1:-62514708 Msa0562570:CDS
TTTGAAGAGAAAACAGAAGC+CGG 0.545580 4_1:+62512398 None:intergenic
TGAAGTTGTCACAGCAACTA+AGG 0.548728 4_1:-62514379 Msa0562570:CDS
CTGTTAGAGTAAAACCTAGC+AGG 0.549424 4_1:-62514938 Msa0562570:CDS
CAGAAGAAGCTCATCAAACC+GGG 0.552003 4_1:-62513955 Msa0562570:CDS
CCGACATGGGTGGTGTTGGT+GGG 0.552332 4_1:-62515313 Msa0562570:CDS
ATTCTAGTCGCTGTAAAGAT+GGG 0.557373 4_1:-62514234 Msa0562570:CDS
AAGAAATTCTGAGAGTATGA+GGG 0.558555 4_1:-62514520 Msa0562570:CDS
GGCAGATGAAGCAAGGAGGG+CGG 0.561217 4_1:-62512102 Msa0562570:CDS
AAGATTTGCTCGGGAAACAA+AGG 0.561700 4_1:-62514093 Msa0562570:CDS
TTTCTGAGAGATTCCGACAT+GGG 0.564131 4_1:-62515326 Msa0562570:CDS
CTGAGAGATTCCGACATGGG+TGG 0.565498 4_1:-62515323 Msa0562570:CDS
AGTTGCTGTGACAACTTCAT+CGG 0.566110 4_1:+62514383 None:intergenic
TTACGAGTTAAAGAACAACT+TGG 0.566899 4_1:+62514816 None:intergenic
TGTGACTGTAAGATTTGCTC+GGG 0.566967 4_1:-62514102 Msa0562570:CDS
ATGAATAGATGCGGAAAACA+TGG 0.567045 4_1:-62512429 Msa0562570:intron
CAAGGCAGATGAAGCAAGGA+GGG 0.567736 4_1:-62512105 Msa0562570:CDS
TTCAAAGCAGGCTTGAGAGA+AGG 0.571954 4_1:-62514308 Msa0562570:CDS
ATCATGGCCAAGAGAGAGAG+AGG 0.573990 4_1:+62515467 None:intergenic
TGTGTTCATGTCTTGCGCAA+AGG 0.574825 4_1:-62513839 Msa0562570:CDS
GTTAGTTCATTTATGCAACC+AGG 0.577258 4_1:-62514648 Msa0562570:CDS
GCTGGTAAAGATCTTCGTAA+TGG 0.577310 4_1:-62515443 Msa0562570:CDS
TGGGAAGCGAGGATCGCAAA+GGG 0.578869 4_1:-62513762 Msa0562570:CDS
GACGATCAAATTTGGAACTG+TGG 0.579357 4_1:-62514759 Msa0562570:CDS
CCCATCCAAAGAAGACATCA+AGG 0.582862 4_1:-62512255 Msa0562570:CDS
GAGACCAAAGGTTCAGACAC+TGG 0.583046 4_1:-62515042 Msa0562570:CDS
GAAAGGACCTTCTGGTACCA+CGG 0.584387 4_1:-62513923 Msa0562570:CDS
GATTCCGACATGGGTGGTGT+TGG 0.585191 4_1:-62515317 Msa0562570:CDS
AGCGAAAATGTTTCAAACCA+AGG 0.585612 4_1:-62512123 Msa0562570:CDS
GAAATTGGATGAAATGAAAG+TGG 0.585716 4_1:-62511970 Msa0562570:CDS
GGGTCCAACCAGGTTTCTGG+TGG 0.586519 4_1:-62515293 Msa0562570:CDS
GCAGCTTTACTAAGCAAAGG+TGG 0.587422 4_1:-62512188 Msa0562570:CDS
GAGACAGCGTGTCCTTTGGA+AGG 0.588812 4_1:+62512351 None:intergenic
TTAGCAGCTTTACTAAGCAA+AGG 0.589034 4_1:-62512191 Msa0562570:CDS
GGACTGTCCAGCTTCTTGTA+CGG 0.589156 4_1:-62514213 Msa0562570:CDS
CTCTCAAGCCAGCCTTCCAA+AGG 0.589453 4_1:-62512363 Msa0562570:CDS
ATAGGTTTGAGACTCATTCA+GGG 0.591379 4_1:-62514554 Msa0562570:CDS
AAGCAAGGAGGGCGGCAGAA+GGG 0.593219 4_1:-62512094 Msa0562570:CDS
TTGTGACTGTAAGATTTGCT+CGG 0.596225 4_1:-62514103 Msa0562570:CDS
GAGAAGGTCTGATCTTTCCA+AGG 0.598294 4_1:-62514292 Msa0562570:CDS
AGAAATTCTGAGAGTATGAG+GGG 0.598802 4_1:-62514519 Msa0562570:CDS
AAATTTGGAACTGTGGTGAA+GGG 0.599075 4_1:-62514752 Msa0562570:CDS
TGTCTAGCAGGCAATTCAGA+AGG 0.601429 4_1:+62514576 None:intergenic
ACAATCAAGCTCTTTCAACA+AGG 0.601694 4_1:+62513801 None:intergenic
GAGAATTCAAATCAAGATGG+AGG 0.603346 4_1:-62515158 Msa0562570:CDS
AAACCAAGGCAGATGAAGCA+AGG 0.604039 4_1:-62512109 Msa0562570:CDS
CCCACCAACACCACCCATGT+CGG 0.606420 4_1:+62515313 None:intergenic
AAGCGAGGATCGCAAAGGGA+AGG 0.617272 4_1:-62513758 Msa0562570:CDS
TGTCTTGCGCAAAGGATTGG+GGG 0.617678 4_1:-62513831 Msa0562570:CDS
AATGGTGTTGCTGATTCTGA+TGG 0.626641 4_1:-62515425 Msa0562570:CDS
ATGGGAAGCGAGGATCGCAA+AGG 0.626733 4_1:-62513763 Msa0562570:CDS
TATTGGATGTGAACATGCAT+CGG 0.629214 4_1:-62513884 Msa0562570:CDS
AAGAGCTTGATTGTGTGAGG+AGG 0.633626 4_1:-62513792 Msa0562570:CDS
ACAATGAAACTGTATTTCCG+TGG 0.634167 4_1:+62513906 None:intergenic
TGTATTTCCGTGGTACCAGA+AGG 0.636444 4_1:+62513916 None:intergenic
GATGTGATGTTTGTTCACAC+TGG 0.637613 4_1:-62513999 Msa0562570:CDS
GTTTCCACATAGATAACTCA+GGG 0.638114 4_1:+62515247 None:intergenic
TAGGTTTGAGACTCATTCAG+GGG 0.639490 4_1:-62514553 Msa0562570:CDS
TTTGAATAAGAATGAGACAA+AGG 0.645076 4_1:+62514873 None:intergenic
TGAAAGAGCTTGATTGTGTG+AGG 0.645254 4_1:-62513795 Msa0562570:CDS
ATTGGATGAAATGAAAGTGG+TGG 0.645371 4_1:-62511967 Msa0562570:CDS
TCTGGATGCCACAAACAGCA+TGG 0.649091 4_1:+62513974 None:intergenic
ATACCGAGGAAACGCAGAGG+AGG 0.654221 4_1:-62511992 Msa0562570:CDS
TATTAGGGATAAGAGACCAA+AGG 0.659782 4_1:-62515054 Msa0562570:CDS
CCAAGGCAGATGAAGCAAGG+AGG 0.661271 4_1:-62512106 Msa0562570:CDS
TTGACCCTGAGTTATCTATG+TGG 0.661402 4_1:-62515251 Msa0562570:CDS
GTTACCACCAGAAACCTGGT+TGG 0.662098 4_1:+62515289 None:intergenic
TGGTTTGTTGGCGAGAATGG+AGG 0.674598 4_1:-62511889 Msa0562570:CDS
TCATGGCCAAGAGAGAGAGA+GGG 0.677495 4_1:+62515468 None:intergenic
ACTCATTCAGGGGATTCAAG+GGG 0.678667 4_1:-62514543 Msa0562570:CDS
GGAATCTTTCAAAACCAGAG+AGG 0.683101 4_1:-62514467 Msa0562570:CDS
ACTCTGTCTGAATGATACCG+AGG 0.693322 4_1:-62512006 Msa0562570:CDS
AATTTGATCGTCTTTACTCG+CGG 0.693340 4_1:+62514770 None:intergenic
GAGCATTGTTCGGATAAAGG+AGG 0.695694 4_1:-62512150 Msa0562570:CDS
ATGATACCGAGGAAACGCAG+AGG 0.740426 4_1:-62511995 Msa0562570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAAAATATATGAAAAA+AGG + chr4_1:62515379-62515398 None:intergenic 10.0%
!!! GAATTTAAAGTAATTGTTTT+TGG - chr4_1:62514311-62514330 Msa0562570:CDS 15.0%
!! TAGATATCAGATATAATTAT+AGG + chr4_1:62514747-62514766 None:intergenic 15.0%
!!! AATTTATAGATTCAAGATTT+TGG - chr4_1:62515506-62515525 Msa0562570:five_prime_UTR 15.0%
!! TGAATTGTCAATGAAAAAAT+AGG + chr4_1:62512808-62512827 None:intergenic 20.0%
!!! TATTTTTTCATTGACAATTC+AGG - chr4_1:62512807-62512826 Msa0562570:intron 20.0%
!!! AATTTTTATTTCAGCAATGA+CGG + chr4_1:62513792-62513811 None:intergenic 20.0%
!! TGTTAATTGAATTTAGTGTT+TGG - chr4_1:62513851-62513870 Msa0562570:CDS 20.0%
!!! TTTTTTAAGACAAGAAATTC+AGG - chr4_1:62513939-62513958 Msa0562570:CDS 20.0%
!!! TTTTTAAGACAAGAAATTCA+GGG - chr4_1:62513940-62513959 Msa0562570:CDS 20.0%
!! TTGAATATTTATGCCTAATA+TGG - chr4_1:62514378-62514397 Msa0562570:CDS 20.0%
!!! ATTTTTTAGTTCACTAAAGA+TGG + chr4_1:62514993-62515012 None:intergenic 20.0%
!!! TTTATTTTGTTTTCTTACTC+AGG - chr4_1:62515402-62515421 Msa0562570:CDS 20.0%
! TGAAAGAGAGAGTAATATTA+GGG - chr4_1:62512150-62512169 Msa0562570:CDS 25.0%
! TTTGAATAAGAATGAGACAA+AGG + chr4_1:62512349-62512368 None:intergenic 25.0%
! AAAGCCATTTGAAAATGAAA+AGG + chr4_1:62512374-62512393 None:intergenic 25.0%
! TTCTTTAACTCGTAATTCAA+CGG - chr4_1:62512411-62512430 Msa0562570:CDS 25.0%
! TTATAATGACTACTATTACC+TGG + chr4_1:62512592-62512611 None:intergenic 25.0%
! ATTCAGAAGGAAAAAAAGAA+TGG + chr4_1:62512633-62512652 None:intergenic 25.0%
! GATTGTTAGGGAAATTATTT+GGG - chr4_1:62512774-62512793 Msa0562570:intron 25.0%
! CAATCAAAGTTCAAACAAAT+AGG + chr4_1:62513174-62513193 None:intergenic 25.0%
! GAAATACAGTTTCATTGTAT+TGG - chr4_1:62513318-62513337 Msa0562570:intron 25.0%
!!! ATTTTTATTTCAGCAATGAC+GGG + chr4_1:62513791-62513810 None:intergenic 25.0%
! GAAAAAATCAAACAATGATG+AGG - chr4_1:62513884-62513903 Msa0562570:CDS 25.0%
! TTGTCTTAAAAAAACATTGC+TGG + chr4_1:62513932-62513951 None:intergenic 25.0%
! CAAAAGCAAATCTATTTGAA+TGG - chr4_1:62514091-62514110 Msa0562570:CDS 25.0%
! ATTGTCAATCAAACAAATTG+AGG + chr4_1:62514159-62514178 None:intergenic 25.0%
!!! TGACAATTGAACTTTTTCTT+TGG - chr4_1:62514172-62514191 Msa0562570:CDS 25.0%
! TATTTATGCCTAATATGGTA+TGG - chr4_1:62514383-62514402 Msa0562570:CDS 25.0%
! ATTTATGCCTAATATGGTAT+GGG - chr4_1:62514384-62514403 Msa0562570:CDS 25.0%
!! ATTTTTCTGATGAATAGATG+CGG - chr4_1:62514781-62514800 Msa0562570:CDS 25.0%
!! TGTATTGAAGAACTAGATTT+TGG + chr4_1:62514896-62514915 None:intergenic 25.0%
! AAAATGCAAGATGAAATTGA+TGG - chr4_1:62515310-62515329 Msa0562570:CDS 25.0%
! AATTTATTGAAGTTCTGCTT+TGG - chr4_1:62515444-62515463 Msa0562570:CDS 25.0%
! AAATTGAAAATCATCCATTC+TGG + chr4_1:62515484-62515503 None:intergenic 25.0%
! TTTTATGCTATGATTGTGCT+TGG + chr4_1:62511646-62511665 None:intergenic 30.0%
CGTTTGTTTGGATCAAAATT+GGG + chr4_1:62511848-62511867 None:intergenic 30.0%
ACGTTTGTTTGGATCAAAAT+TGG + chr4_1:62511849-62511868 None:intergenic 30.0%
!! AAACAGCATCTTTTTCATCT+GGG + chr4_1:62511874-62511893 None:intergenic 30.0%
!! AAAACAGCATCTTTTTCATC+TGG + chr4_1:62511875-62511894 None:intergenic 30.0%
CTTGAATCTCTTTCAATCTT+GGG + chr4_1:62511997-62512016 None:intergenic 30.0%
TCTGAGAATTCAAATCAAGA+TGG - chr4_1:62512058-62512077 Msa0562570:CDS 30.0%
AAATCAAGATGGAGGAAAAT+GGG - chr4_1:62512069-62512088 Msa0562570:CDS 30.0%
CTGAAAGAGAGAGTAATATT+AGG - chr4_1:62512149-62512168 Msa0562570:CDS 30.0%
! TCAAATGCTTTTCACAACAA+TGG - chr4_1:62512244-62512263 Msa0562570:CDS 30.0%
TATGAAGTATGAGTAGTTGA+AGG + chr4_1:62512307-62512326 None:intergenic 30.0%
! AACGCCTTTTCATTTTCAAA+TGG - chr4_1:62512367-62512386 Msa0562570:CDS 30.0%
TTACGAGTTAAAGAACAACT+TGG + chr4_1:62512406-62512425 None:intergenic 30.0%
! AAGAAATTCTGAGAGTATGA+GGG - chr4_1:62512699-62512718 Msa0562570:intron 30.0%
GGATTGTTAGGGAAATTATT+TGG - chr4_1:62512773-62512792 Msa0562570:intron 30.0%
TAATCTTCAGTTATCTGAGT+TGG - chr4_1:62513029-62513048 Msa0562570:intron 30.0%
AGTAATACTTGTAGTTGGAT+TGG - chr4_1:62513198-62513217 Msa0562570:intron 30.0%
AGTTAGTAGGATTGTGAATA+GGG - chr4_1:62513661-62513680 Msa0562570:intron 30.0%
!! GGACACAAATTTTGATATGA+AGG - chr4_1:62513686-62513705 Msa0562570:CDS 30.0%
!! CACAAATTTTGATATGAAGG+TGG - chr4_1:62513689-62513708 Msa0562570:CDS 30.0%
CAAATAACAGACAATTCAGA+AGG - chr4_1:62513815-62513834 Msa0562570:CDS 30.0%
TTTAGTGTTTGGTTGTTCAA+AGG - chr4_1:62513862-62513881 Msa0562570:CDS 30.0%
AAATCAAACAATGATGAGGA+TGG - chr4_1:62513888-62513907 Msa0562570:CDS 30.0%
AAAACATTGCTGGAAAACTT+TGG + chr4_1:62513922-62513941 None:intergenic 30.0%
!! TGTTGATATTGCTTTTGAAG+TGG - chr4_1:62513980-62513999 Msa0562570:CDS 30.0%
!!! GTTGATATTGCTTTTGAAGT+GGG - chr4_1:62513981-62514000 Msa0562570:CDS 30.0%
AGTGGGATTATAAGCATATT+TGG - chr4_1:62513998-62514017 Msa0562570:CDS 30.0%
ATATTGAAGCTGAATACTGT+AGG + chr4_1:62514203-62514222 None:intergenic 30.0%
AAATGCAAAATACCATTGCT+AGG + chr4_1:62514442-62514461 None:intergenic 30.0%
! TTGAAATGTGCTTTTCTCTT+TGG - chr4_1:62514564-62514583 Msa0562570:CDS 30.0%
AGTTACATCAACACATTCAA+CGG + chr4_1:62514592-62514611 None:intergenic 30.0%
TCAATAGTTAAAGCTAAAGC+AGG + chr4_1:62514676-62514695 None:intergenic 30.0%
GAAATTGGATGAAATGAAAG+TGG - chr4_1:62515249-62515268 Msa0562570:CDS 30.0%
! AGATGAAATTGATGGTTTGT+TGG - chr4_1:62515318-62515337 Msa0562570:CDS 30.0%
AAGATCTTTACCAGCAATCA+TGG + chr4_1:62511771-62511790 None:intergenic 35.0%
GTTTCCACATAGATAACTCA+GGG + chr4_1:62511975-62511994 None:intergenic 35.0%
CCTTGAATCTCTTTCAATCT+TGG + chr4_1:62511998-62512017 None:intergenic 35.0%
CCAAGATTGAAAGAGATTCA+AGG - chr4_1:62511995-62512014 Msa0562570:CDS 35.0%
TGAAAGCTTTCTGAGTCAAA+AGG - chr4_1:62512018-62512037 Msa0562570:CDS 35.0%
GAAAGCTTTCTGAGTCAAAA+GGG - chr4_1:62512019-62512038 Msa0562570:CDS 35.0%
TCAAAAGGGTAAAGAGGTTA+TGG - chr4_1:62512033-62512052 Msa0562570:CDS 35.0%
GAGAATTCAAATCAAGATGG+AGG - chr4_1:62512061-62512080 Msa0562570:CDS 35.0%
CAAATCAAGATGGAGGAAAA+TGG - chr4_1:62512068-62512087 Msa0562570:CDS 35.0%
TATTAGGGATAAGAGACCAA+AGG - chr4_1:62512165-62512184 Msa0562570:CDS 35.0%
GTAAGAGAAAGAGAAACATC+AGG + chr4_1:62512220-62512239 None:intergenic 35.0%
AATTTGATCGTCTTTACTCG+CGG + chr4_1:62512452-62512471 None:intergenic 35.0%
CGAGTAAAGACGATCAAATT+TGG - chr4_1:62512452-62512471 Msa0562570:intron 35.0%
! AAATTTGGAACTGTGGTGAA+GGG - chr4_1:62512467-62512486 Msa0562570:intron 35.0%
GTTAGTTCATTTATGCAACC+AGG - chr4_1:62512571-62512590 Msa0562570:intron 35.0%
! ATAGGTTTGAGACTCATTCA+GGG - chr4_1:62512665-62512684 Msa0562570:intron 35.0%
! GAAGAAATTCTGAGAGTATG+AGG - chr4_1:62512698-62512717 Msa0562570:intron 35.0%
! AGAAATTCTGAGAGTATGAG+GGG - chr4_1:62512700-62512719 Msa0562570:intron 35.0%
AAAACCAGAGAGGATTGTTA+GGG - chr4_1:62512762-62512781 Msa0562570:intron 35.0%
GTTGACTAATTCGTCTTTCT+TGG + chr4_1:62512890-62512909 None:intergenic 35.0%
AATTAGTCAACCTTCAAAGC+AGG - chr4_1:62512899-62512918 Msa0562570:intron 35.0%
!! AAAGGGTACTAAAGTTCAGT+TGG - chr4_1:62512960-62512979 Msa0562570:intron 35.0%
ATTCTAGTCGCTGTAAAGAT+GGG - chr4_1:62512985-62513004 Msa0562570:intron 35.0%
! TGGTAGAGGTTTTCTTGTAT+AGG - chr4_1:62513049-62513068 Msa0562570:intron 35.0%
! TAGAGGTTTTCTTGTATAGG+AGG - chr4_1:62513052-62513071 Msa0562570:intron 35.0%
TTACAGTCACAATCATCAAC+AGG + chr4_1:62513108-62513127 None:intergenic 35.0%
! TTGTGACTGTAAGATTTGCT+CGG - chr4_1:62513116-62513135 Msa0562570:intron 35.0%
GTGCAAGTAATACTTGTAGT+TGG - chr4_1:62513193-62513212 Msa0562570:intron 35.0%
ACAATGAAACTGTATTTCCG+TGG + chr4_1:62513316-62513335 None:intergenic 35.0%
TATTGGATGTGAACATGCAT+CGG - chr4_1:62513335-62513354 Msa0562570:intron 35.0%
ACAATCAAGCTCTTTCAACA+AGG + chr4_1:62513421-62513440 None:intergenic 35.0%
GAACTGCATTTGAAAACTGA+TGG - chr4_1:62513483-62513502 Msa0562570:intron 35.0%
AAATTGCATGATCTGATTGC+AGG + chr4_1:62513553-62513572 None:intergenic 35.0%
GAGTTAGTAGGATTGTGAAT+AGG - chr4_1:62513660-62513679 Msa0562570:intron 35.0%
! AAAATGCTCACGAGAGATTT+TGG + chr4_1:62514051-62514070 None:intergenic 35.0%
CATAACACCCATACCATATT+AGG + chr4_1:62514394-62514413 None:intergenic 35.0%
! GCAATGGTATTTTGCATTTG+AGG - chr4_1:62514443-62514462 Msa0562570:CDS 35.0%
!! TGGTATTTTGCATTTGAGGT+AGG - chr4_1:62514447-62514466 Msa0562570:CDS 35.0%
AGATGACACAACAAATCACA+GGG + chr4_1:62514636-62514655 None:intergenic 35.0%
AAGATGACACAACAAATCAC+AGG + chr4_1:62514637-62514656 None:intergenic 35.0%
!! TGTGATTTGTTGTGTCATCT+TGG - chr4_1:62514636-62514655 Msa0562570:CDS 35.0%
!! GTGATTTGTTGTGTCATCTT+GGG - chr4_1:62514637-62514656 Msa0562570:CDS 35.0%
GTTAAAGCTAAAGCAGGAAA+AGG + chr4_1:62514670-62514689 None:intergenic 35.0%
ATGAATAGATGCGGAAAACA+TGG - chr4_1:62514790-62514809 Msa0562570:CDS 35.0%
TTTGAAGAGAAAACAGAAGC+CGG + chr4_1:62514824-62514843 None:intergenic 35.0%
TTAGCAGCTTTACTAAGCAA+AGG - chr4_1:62515028-62515047 Msa0562570:CDS 35.0%
CAAAGGTGGAATTGAAAGTT+TGG - chr4_1:62515045-62515064 Msa0562570:CDS 35.0%
!! AAAGTTTGGAGAGCATTGTT+CGG - chr4_1:62515059-62515078 Msa0562570:CDS 35.0%
AGCGAAAATGTTTCAAACCA+AGG - chr4_1:62515096-62515115 Msa0562570:CDS 35.0%
ATTGGATGAAATGAAAGTGG+TGG - chr4_1:62515252-62515271 Msa0562570:CDS 35.0%
! TATTCTGGTTGTTTCCAGAA+TGG - chr4_1:62515467-62515486 Msa0562570:exon 35.0%
GCTATGATTGTGCTTGGTTT+CGG + chr4_1:62511640-62511659 None:intergenic 40.0%
GAACGAAGAGAGAGAAACTA+AGG + chr4_1:62511727-62511746 None:intergenic 40.0%
GCTGGTAAAGATCTTCGTAA+TGG - chr4_1:62511776-62511795 Msa0562570:three_prime_UTR 40.0%
!! AATGGTGTTGCTGATTCTGA+TGG - chr4_1:62511794-62511813 Msa0562570:three_prime_UTR 40.0%
! GGGTCTTGATAACTTACTTC+TGG + chr4_1:62511828-62511847 None:intergenic 40.0%
TCATCTGGGTAACGTTTGTT+TGG + chr4_1:62511860-62511879 None:intergenic 40.0%
!! TTTTCTGAGAGATTCCGACA+TGG - chr4_1:62511892-62511911 Msa0562570:CDS 40.0%
! TTTCTGAGAGATTCCGACAT+GGG - chr4_1:62511893-62511912 Msa0562570:CDS 40.0%
TTGACCCTGAGTTATCTATG+TGG - chr4_1:62511968-62511987 Msa0562570:CDS 40.0%
GGTTTCCACATAGATAACTC+AGG + chr4_1:62511976-62511995 None:intergenic 40.0%
TCTGAGTCAAAAGGGTAAAG+AGG - chr4_1:62512027-62512046 Msa0562570:CDS 40.0%
! CTGCTAGGTTTTACTCTAAC+AGG + chr4_1:62512283-62512302 None:intergenic 40.0%
CTGTTAGAGTAAAACCTAGC+AGG - chr4_1:62512281-62512300 Msa0562570:CDS 40.0%
! GACGATCAAATTTGGAACTG+TGG - chr4_1:62512460-62512479 Msa0562570:intron 40.0%
! CAAATTTGGAACTGTGGTGA+AGG - chr4_1:62512466-62512485 Msa0562570:intron 40.0%
CATAGCAGGTTTAAGCCAAT+TGG - chr4_1:62512505-62512524 Msa0562570:intron 40.0%
AGGTTTAAGCCAATTGGTGA+TGG - chr4_1:62512511-62512530 Msa0562570:intron 40.0%
GCAACAATACCATCACCAAT+TGG + chr4_1:62512523-62512542 None:intergenic 40.0%
!! TGGTGATGGTATTGTTGCTT+TGG - chr4_1:62512525-62512544 Msa0562570:intron 40.0%
!! ATTGTTGCTTTGGCAAATCC+TGG - chr4_1:62512535-62512554 Msa0562570:intron 40.0%
! CATAGGTTTGAGACTCATTC+AGG - chr4_1:62512664-62512683 Msa0562570:intron 40.0%
! TAGGTTTGAGACTCATTCAG+GGG - chr4_1:62512666-62512685 Msa0562570:intron 40.0%
!!! AGGGGTTTTGAAGGTTTAGA+TGG - chr4_1:62512718-62512737 Msa0562570:intron 40.0%
!!! GGTTTTGAAGGTTTAGATGG+TGG - chr4_1:62512721-62512740 Msa0562570:intron 40.0%
! TTTGAAGGTTTAGATGGTGG+TGG - chr4_1:62512724-62512743 Msa0562570:intron 40.0%
!! GTTTAGATGGTGGTGGAAAT+AGG - chr4_1:62512731-62512750 Msa0562570:intron 40.0%
GGAATCTTTCAAAACCAGAG+AGG - chr4_1:62512752-62512771 Msa0562570:intron 40.0%
CAAAACCAGAGAGGATTGTT+AGG - chr4_1:62512761-62512780 Msa0562570:intron 40.0%
ATTTCCCTAACAATCCTCTC+TGG + chr4_1:62512769-62512788 None:intergenic 40.0%
AGTTGCTGTGACAACTTCAT+CGG + chr4_1:62512839-62512858 None:intergenic 40.0%
TGAAGTTGTCACAGCAACTA+AGG - chr4_1:62512840-62512859 Msa0562570:intron 40.0%
TTCCAAGGAGACACTTTCAA+AGG - chr4_1:62512942-62512961 Msa0562570:intron 40.0%
TCCAAGGAGACACTTTCAAA+GGG - chr4_1:62512943-62512962 Msa0562570:intron 40.0%
GATTCTAGTCGCTGTAAAGA+TGG - chr4_1:62512984-62513003 Msa0562570:intron 40.0%
AAGATTACCGTACAAGAAGC+TGG + chr4_1:62513016-62513035 None:intergenic 40.0%
!! TCAGTTATCTGAGTTGGTAG+AGG - chr4_1:62513035-62513054 Msa0562570:intron 40.0%
! TGTGACTGTAAGATTTGCTC+GGG - chr4_1:62513117-62513136 Msa0562570:intron 40.0%
! AAGATTTGCTCGGGAAACAA+AGG - chr4_1:62513126-62513145 Msa0562570:intron 40.0%
! AGATTTGCTCGGGAAACAAA+GGG - chr4_1:62513127-62513146 Msa0562570:intron 40.0%
GATGTGATGTTTGTTCACAC+TGG - chr4_1:62513220-62513239 Msa0562570:intron 40.0%
GAACATGCATCGGAAATGTT+TGG - chr4_1:62513345-62513364 Msa0562570:intron 40.0%
TGAAAGAGCTTGATTGTGTG+AGG - chr4_1:62513424-62513443 Msa0562570:intron 40.0%
! TTGTGTGAGGAGGATTTTCA+TGG - chr4_1:62513437-62513456 Msa0562570:intron 40.0%
! TGTGTGAGGAGGATTTTCAT+GGG - chr4_1:62513438-62513457 Msa0562570:intron 40.0%
AACTGTAAGTGTCTCGACTA+TGG - chr4_1:62513576-62513595 Msa0562570:intron 40.0%
AGTAGGATTGTGAATAGGGA+AGG - chr4_1:62513665-62513684 Msa0562570:CDS 40.0%
CAAACAATGATGAGGATGGA+TGG - chr4_1:62513892-62513911 Msa0562570:CDS 40.0%
GTTGTGTCATCTTGGGTATA+AGG - chr4_1:62514644-62514663 Msa0562570:CDS 40.0%
GGAAAACATGGCAAACTTTC+CGG - chr4_1:62514802-62514821 Msa0562570:CDS 40.0%
! GGCTTCTGTTTTCTCTTCAA+AGG - chr4_1:62514823-62514842 Msa0562570:CDS 40.0%
ATGAGTCGAGCTATTCTACT+AGG - chr4_1:62514927-62514946 Msa0562570:CDS 40.0%
TATTCTACTAGGCCACATTC+CGG - chr4_1:62514938-62514957 Msa0562570:CDS 40.0%
CTTGATGTCTTCTTTGGATG+GGG + chr4_1:62514966-62514985 None:intergenic 40.0%
CCTTGATGTCTTCTTTGGAT+GGG + chr4_1:62514967-62514986 None:intergenic 40.0%
TCTTTGTCCTGATCATCTTC+TGG + chr4_1:62515153-62515172 None:intergenic 40.0%
GAAGTTCTGCTTTGGTATTC+TGG - chr4_1:62515452-62515471 Msa0562570:CDS 40.0%
AGATCCAGTGTCTGAACCTT+TGG + chr4_1:62512184-62512203 None:intergenic 45.0%
CAGACACTGGATCTTTCTCT+TGG - chr4_1:62512190-62512209 Msa0562570:CDS 45.0%
AACTGTGGTGAAGGGACTAA+TGG - chr4_1:62512475-62512494 Msa0562570:intron 45.0%
! CTAATGGTTCTGTGCATAGC+AGG - chr4_1:62512491-62512510 Msa0562570:intron 45.0%
GCTTTGGCAAATCCTGGAAA+TGG - chr4_1:62512541-62512560 Msa0562570:intron 45.0%
GCAAATCCTGGAAATGGAAC+TGG - chr4_1:62512547-62512566 Msa0562570:intron 45.0%
CTAACACCAGTTCCATTTCC+AGG + chr4_1:62512556-62512575 None:intergenic 45.0%
TGTCTAGCAGGCAATTCAGA+AGG + chr4_1:62512646-62512665 None:intergenic 45.0%
CTGAATTGCCTGCTAGACAT+AGG - chr4_1:62512647-62512666 Msa0562570:intron 45.0%
GTCTCAAACCTATGTCTAGC+AGG + chr4_1:62512658-62512677 None:intergenic 45.0%
AGACTCATTCAGGGGATTCA+AGG - chr4_1:62512674-62512693 Msa0562570:intron 45.0%
GACTCATTCAGGGGATTCAA+GGG - chr4_1:62512675-62512694 Msa0562570:intron 45.0%
ACTCATTCAGGGGATTCAAG+GGG - chr4_1:62512676-62512695 Msa0562570:intron 45.0%
!! GAGAGTATGAGGGGTTTTGA+AGG - chr4_1:62512709-62512728 Msa0562570:intron 45.0%
TTCTCTCAAGCCTGCTTTGA+AGG + chr4_1:62512912-62512931 None:intergenic 45.0%
TTCAAAGCAGGCTTGAGAGA+AGG - chr4_1:62512911-62512930 Msa0562570:intron 45.0%
GAGAAGGTCTGATCTTTCCA+AGG - chr4_1:62512927-62512946 Msa0562570:intron 45.0%
!! ACCCTTTGAAAGTGTCTCCT+TGG + chr4_1:62512947-62512966 None:intergenic 45.0%
AACAGGAAGCAAACTCTTGC+AGG + chr4_1:62513091-62513110 None:intergenic 45.0%
CCAGAAGAAGCTCATCAAAC+CGG - chr4_1:62513263-62513282 Msa0562570:intron 45.0%
CAGAAGAAGCTCATCAAACC+GGG - chr4_1:62513264-62513283 Msa0562570:intron 45.0%
TGTATTTCCGTGGTACCAGA+AGG + chr4_1:62513306-62513325 None:intergenic 45.0%
TGTGTTCATGTCTTGCGCAA+AGG - chr4_1:62513380-62513399 Msa0562570:intron 45.0%
TCATGTCTTGCGCAAAGGAT+TGG - chr4_1:62513385-62513404 Msa0562570:intron 45.0%
CATGTCTTGCGCAAAGGATT+GGG - chr4_1:62513386-62513405 Msa0562570:intron 45.0%
ATGTCTTGCGCAAAGGATTG+GGG - chr4_1:62513387-62513406 Msa0562570:intron 45.0%
AAGAGCTTGATTGTGTGAGG+AGG - chr4_1:62513427-62513446 Msa0562570:intron 45.0%
ATCTGATTGCAGGCTTCTGA+AGG + chr4_1:62513543-62513562 None:intergenic 45.0%
CCTACTAACTCAAATGCTGC+AGG + chr4_1:62513651-62513670 None:intergenic 45.0%
! CCTGCAGCATTTGAGTTAGT+AGG - chr4_1:62513648-62513667 Msa0562570:intron 45.0%
ATGACACTGTGTCCTAGCAA+TGG - chr4_1:62514427-62514446 Msa0562570:CDS 45.0%
! GTTTGTGTCGGTGCTTCATA+GGG + chr4_1:62514501-62514520 None:intergenic 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG + chr4_1:62514502-62514521 None:intergenic 45.0%
!! ATGAAGCACCGACACAAACA+CGG - chr4_1:62514502-62514521 Msa0562570:CDS 45.0%
AGTGTTTGCATGTGAGTGTC+TGG + chr4_1:62514531-62514550 None:intergenic 45.0%
CCCATCCAAAGAAGACATCA+AGG - chr4_1:62514964-62514983 Msa0562570:CDS 45.0%
GCCTTGATGTCTTCTTTGGA+TGG + chr4_1:62514968-62514987 None:intergenic 45.0%
! GGTAGCCTTGATGTCTTCTT+TGG + chr4_1:62514972-62514991 None:intergenic 45.0%
GCAGCTTTACTAAGCAAAGG+TGG - chr4_1:62515031-62515050 Msa0562570:CDS 45.0%
!! GGAGAGCATTGTTCGGATAA+AGG - chr4_1:62515066-62515085 Msa0562570:CDS 45.0%
! GAGCATTGTTCGGATAAAGG+AGG - chr4_1:62515069-62515088 Msa0562570:CDS 45.0%
AAACCAAGGCAGATGAAGCA+AGG - chr4_1:62515110-62515129 Msa0562570:CDS 45.0%
AAGGGTTCCAGAAGATGATC+AGG - chr4_1:62515143-62515162 Msa0562570:CDS 45.0%
ACTCTGTCTGAATGATACCG+AGG - chr4_1:62515213-62515232 Msa0562570:CDS 45.0%
!! TGATGGTTTGTTGGCGAGAA+TGG - chr4_1:62515327-62515346 Msa0562570:CDS 45.0%
TCATCTCCCTCTCTCTCTCT+TGG - chr4_1:62511745-62511764 Msa0562570:three_prime_UTR 50.0%
TCATGGCCAAGAGAGAGAGA+GGG + chr4_1:62511754-62511773 None:intergenic 50.0%
ATCATGGCCAAGAGAGAGAG+AGG + chr4_1:62511755-62511774 None:intergenic 50.0%
TCTCTCTTGGCCATGATTGC+TGG - chr4_1:62511758-62511777 Msa0562570:three_prime_UTR 50.0%
GTTACCACCAGAAACCTGGT+TGG + chr4_1:62511933-62511952 None:intergenic 50.0%
CTGAGTTACCACCAGAAACC+TGG + chr4_1:62511937-62511956 None:intergenic 50.0%
!! CAGGTTTCTGGTGGTAACTC+AGG - chr4_1:62511935-62511954 Msa0562570:CDS 50.0%
GAGACCAAAGGTTCAGACAC+TGG - chr4_1:62512177-62512196 Msa0562570:CDS 50.0%
TGAGTAGTTGAAGGCCTGCT+AGG + chr4_1:62512298-62512317 None:intergenic 50.0%
GGACTGTCCAGCTTCTTGTA+CGG - chr4_1:62513006-62513025 Msa0562570:intron 50.0%
TCTGGATGCCACAAACAGCA+TGG + chr4_1:62513248-62513267 None:intergenic 50.0%
! CCGGTTTGATGAGCTTCTTC+TGG + chr4_1:62513266-62513285 None:intergenic 50.0%
CCAGAAGGTCCTTTCAAGCT+CGG + chr4_1:62513291-62513310 None:intergenic 50.0%
GAAAGGACCTTCTGGTACCA+CGG - chr4_1:62513296-62513315 Msa0562570:intron 50.0%
TGTCTTGCGCAAAGGATTGG+GGG - chr4_1:62513388-62513407 Msa0562570:intron 50.0%
! GAGGATTTTCATGGGAAGCG+AGG - chr4_1:62513446-62513465 Msa0562570:intron 50.0%
! GCATTTGAGGTAGGAAGCGT+TGG - chr4_1:62514456-62514475 Msa0562570:CDS 50.0%
!! TGAAGCACCGACACAAACAC+GGG - chr4_1:62514503-62514522 Msa0562570:CDS 50.0%
CAAGGCAGATGAAGCAAGGA+GGG - chr4_1:62515114-62515133 Msa0562570:CDS 50.0%
CAGGACAAAGACTGCACAGA+TGG - chr4_1:62515162-62515181 Msa0562570:CDS 50.0%
ATGATACCGAGGAAACGCAG+AGG - chr4_1:62515224-62515243 Msa0562570:CDS 50.0%
TTTCCTCCTCTGCGTTTCCT+CGG + chr4_1:62515233-62515252 None:intergenic 50.0%
GGAAACGCAGAGGAGGAAAT+TGG - chr4_1:62515234-62515253 Msa0562570:CDS 50.0%
!! TGGTTTGTTGGCGAGAATGG+AGG - chr4_1:62515330-62515349 Msa0562570:CDS 50.0%
TGGAGGCAACAAAGCAGCAT+TGG - chr4_1:62515347-62515366 Msa0562570:CDS 50.0%
GGAGGCAACAAAGCAGCATT+GGG - chr4_1:62515348-62515367 Msa0562570:CDS 50.0%
CTGAGAGATTCCGACATGGG+TGG - chr4_1:62511896-62511915 Msa0562570:CDS 55.0%
GATTCCGACATGGGTGGTGT+TGG - chr4_1:62511902-62511921 Msa0562570:CDS 55.0%
!! CACTGGTGCCATGCTGTTTG+TGG - chr4_1:62513237-62513256 Msa0562570:intron 55.0%
AAACCGGGACCGAGCTTGAA+AGG - chr4_1:62513279-62513298 Msa0562570:intron 55.0%
CCGAGCTTGAAAGGACCTTC+TGG - chr4_1:62513288-62513307 Msa0562570:intron 55.0%
ATGGGAAGCGAGGATCGCAA+AGG - chr4_1:62513456-62513475 Msa0562570:intron 55.0%
TGGGAAGCGAGGATCGCAAA+GGG - chr4_1:62513457-62513476 Msa0562570:intron 55.0%
AAGCGAGGATCGCAAAGGGA+AGG - chr4_1:62513461-62513480 Msa0562570:intron 55.0%
TCTGGTGCCCGTGTTTGTGT+CGG + chr4_1:62514513-62514532 None:intergenic 55.0%
!! CTTTGGAAGGCTGGCTTGAG+AGG + chr4_1:62514858-62514877 None:intergenic 55.0%
CTCTCAAGCCAGCCTTCCAA+AGG - chr4_1:62514856-62514875 Msa0562570:CDS 55.0%
GAGACAGCGTGTCCTTTGGA+AGG + chr4_1:62514871-62514890 None:intergenic 55.0%
GGAAGAGACAGCGTGTCCTT+TGG + chr4_1:62514875-62514894 None:intergenic 55.0%
GTCTTCTTTGGATGGGGCAC+CGG + chr4_1:62514960-62514979 None:intergenic 55.0%
CCTCCTTGCTTCATCTGCCT+TGG + chr4_1:62515116-62515135 None:intergenic 55.0%
CCAAGGCAGATGAAGCAAGG+AGG - chr4_1:62515113-62515132 Msa0562570:CDS 55.0%
ATACCGAGGAAACGCAGAGG+AGG - chr4_1:62515227-62515246 Msa0562570:CDS 55.0%
! TCCGACATGGGTGGTGTTGG+TGG - chr4_1:62511905-62511924 Msa0562570:CDS 60.0%
CCCACCAACACCACCCATGT+CGG + chr4_1:62511909-62511928 None:intergenic 60.0%
!! CCGACATGGGTGGTGTTGGT+GGG - chr4_1:62511906-62511925 Msa0562570:CDS 60.0%
!! TGGTGTTGGTGGGTCCAACC+AGG - chr4_1:62511916-62511935 Msa0562570:CDS 60.0%
GGTGGGTCCAACCAGGTTTC+TGG - chr4_1:62511923-62511942 Msa0562570:CDS 60.0%
! GGGTCCAACCAGGTTTCTGG+TGG - chr4_1:62511926-62511945 Msa0562570:CDS 60.0%
GGTCCTTTCAAGCTCGGTCC+CGG + chr4_1:62513285-62513304 None:intergenic 60.0%
! CAGCGTGTCCTTTGGAAGGC+TGG + chr4_1:62514867-62514886 None:intergenic 60.0%
!! TTGGATGGGGCACCGGAATG+TGG + chr4_1:62514953-62514972 None:intergenic 60.0%
GGCAGATGAAGCAAGGAGGG+CGG - chr4_1:62515117-62515136 Msa0562570:CDS 60.0%
AAGCAAGGAGGGCGGCAGAA+GGG - chr4_1:62515125-62515144 Msa0562570:CDS 60.0%
GAAGCAAGGAGGGCGGCAGA+AGG - chr4_1:62515124-62515143 Msa0562570:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 62511631 62515610 62511631 ID=Msa0562570;Name=Msa0562570
chr4_1 mRNA 62511631 62515610 62511631 ID=Msa0562570-mRNA-1;Parent=Msa0562570;Name=Msa0562570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139|1|1|1|1|1|2|235|795
chr4_1 exon 62511631 62512443 62511631 ID=Msa0562570-mRNA-1:exon:19774;Parent=Msa0562570-mRNA-1
chr4_1 exon 62513662 62515610 62513662 ID=Msa0562570-mRNA-1:exon:19773;Parent=Msa0562570-mRNA-1
chr4_1 five_prime_UTR 62515472 62515610 62515472 ID=Msa0562570-mRNA-1:five_prime_utr;Parent=Msa0562570-mRNA-1
chr4_1 CDS 62513662 62515471 62513662 ID=Msa0562570-mRNA-1:cds;Parent=Msa0562570-mRNA-1
chr4_1 CDS 62511866 62512443 62511866 ID=Msa0562570-mRNA-1:cds;Parent=Msa0562570-mRNA-1
chr4_1 three_prime_UTR 62511631 62511865 62511631 ID=Msa0562570-mRNA-1:three_prime_utr;Parent=Msa0562570-mRNA-1
Gene Sequence

>Msa0562570

ATGATTGCTGGTAAAGATCTTCGTAATGGTGTTGCTGATTCTGATGGTGAAAACTCCAGAAGTAAGTTATCAAGACCCAATTTTGATCCAAACAAACGTTACCCAGATGAAAAAGATGCTGTTTTTCTGAGAGATTCCGACATGGGTGGTGTTGGTGGGTCCAACCAGGTTTCTGGTGGTAACTCAGGTTTTCAAGAATTGACCCTGAGTTATCTATGTGGAAACCCAAGATTGAAAGAGATTCAAGGTGAAAGCTTTCTGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGAGAATTCAAATCAAGATGGAGGAAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGATTCTTCAAAGAGATCTATTGAAGAAGATGCTGAAAGAGAGAGTAATATTAGGGATAAGAGACCAAAGGTTCAGACACTGGATCTTTCTCTTGGTTTACCTGATGTTTCTCTTTCTCTTACTGCTTCAAATGCTTTTCACAACAATGGTGATCATCAACAACCTGTTAGAGTAAAACCTAGCAGGCCTTCAACTACTCATACTTCATATTCAAATGATTATACAGCTCCTTTGTCTCATTCTTATTCAAACGCCTTTTCATTTTCAAATGGCTTTTCACATAATCCAAGTTGTTCTTTAACTCGTAATTCAACGGAAAATTTTGATTATTCCGCGAGTAAAGACGATCAAATTTGGAACTGTGGTGAAGGGACTAATGGTTCTGTGCATAGCAGGTTTAAGCCAATTGGTGATGGTATTGTTGCTTTGGCAAATCCTGGAAATGGAACTGGTGTTAGTTCATTTATGCAACCAGGTAATAGTAGTCATTATAAAACGACTAGTTCTGAAAACCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGACATAGGTTTGAGACTCATTCAGGGGATTCAAGGGGAAGAAATTCTGAGAGTATGAGGGGTTTTGAAGGTTTAGATGGTGGTGGAAATAGGAATCTTTCAAAACCAGAGAGGATTGTTAGGGAAATTATTTGGGAGTCTGTTCCTATTTTTTCATTGACAATTCAGGAGCTTGCCGATGAAGTTGTCACAGCAACTAAGGAGTACTTAAAGAATCTTATTGACACCAAGAAAGACGAATTAGTCAACCTTCAAAGCAGGCTTGAGAGAAGGTCTGATCTTTCCAAGGAGACACTTTCAAAGGGTACTAAAGTTCAGTTGGAGATTCTAGTCGCTGTAAAGATGGGACTGTCCAGCTTCTTGTACGGTAATCTTCAGTTATCTGAGTTGGTAGAGGTTTTCTTGTATAGGAGGTGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATTTGCTCGGGAAACAAAGGGTTTTGTAGCTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGTAATACTTGTAGTTGGATTGGATGTGATGTTTGTTCACACTGGTGCCATGCTGTTTGTGGCATCCAGAAGAAGCTCATCAAACCGGGACCGAGCTTGAAAGGACCTTCTGGTACCACGGAAATACAGTTTCATTGTATTGGATGTGAACATGCATCGGAAATGTTTGGATTTGTTAAAGATGTGTTCATGTCTTGCGCAAAGGATTGGGGGATTGAAACCTTGTTGAAAGAGCTTGATTGTGTGAGGAGGATTTTCATGGGAAGCGAGGATCGCAAAGGGAAGGAACTGCATTTGAAAACTGATGGCTTGCTATTAAAGCTTCAAGCTAAAATAGTATCTCCTTCAGAAGCCTGCAATCAGATCATGCAATTTTTCAACTATGCGGAAAACATGGCAAACTTTCCGGCTTCTGTTTTCTCTTCAAAGGAATTGATAGCCTCTCAAGCCAGCCTTCCAAAGGACACGCTGTCTCTTCCAAAATCTAGTTCTTCAATACAGAAATACGCTTATGAGTCGAGCTATTCTACTAGGCCACATTCCGGTGCCCCATCCAAAGAAGACATCAAGGCTACCATCTTTAGTGAACTAAAAAATGACGATGATCTTCAATTAGCAGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCGAAAATGTTTCAAACCAAGGCAGATGAAGCAAGGAGGGCGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACTGCACAGATGGATGAAGAGTATGCGACAAAGCTTTCAAAACTCTGTCTGAATGATACCGAGGAAACGCAGAGGAGGAAATTGGATGAAATGAAAGTGGTGGAAAATTCTTGTGTTGATTACTATAAAATGAAAAAGAAAATGCAAGATGAAATTGATGGTTTGTTGGCGAGAATGGAGGCAACAAAGCAGCATTGGGTTTAA

Protein sequence

>Msa0562570

MIAGKDLRNGVADSDGENSRSKLSRPNFDPNKRYPDEKDAVFLRDSDMGGVGGSNQVSGGNSGFQELTLSYLCGNPRLKEIQGESFLSQKGKEVMVSENSNQDGGKWVERDFLSLSDSSKRSIEEDAERESNIRDKRPKVQTLDLSLGLPDVSLSLTASNAFHNNGDHQQPVRVKPSRPSTTHTSYSNDYTAPLSHSYSNAFSFSNGFSHNPSCSLTRNSTENFDYSASKDDQIWNCGEGTNGSVHSRFKPIGDGIVALANPGNGTGVSSFMQPGNSSHYKTTSSENHSFFPSELPARHRFETHSGDSRGRNSESMRGFEGLDGGGNRNLSKPERIVREIIWESVPIFSLTIQELADEVVTATKEYLKNLIDTKKDELVNLQSRLERRSDLSKETLSKGTKVQLEILVAVKMGLSSFLYGNLQLSELVEVFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTTEIQFHCIGCEHASEMFGFVKDVFMSCAKDWGIETLLKELDCVRRIFMGSEDRKGKELHLKTDGLLLKLQAKIVSPSEACNQIMQFFNYAENMANFPASVFSSKELIASQASLPKDTLSLPKSSSSIQKYAYESSYSTRPHSGAPSKEDIKATIFSELKNDDDLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARRAAEGFQKMIRTKTAQMDEEYATKLSKLCLNDTEETQRRKLDEMKVVENSCVDYYKMKKKMQDEIDGLLARMEATKQHWV*