Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1200780 | KEH20350.1 | 98.406 | 251 | 4 | 0 | 25 | 275 | 31 | 281 | 0.0 | 511 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1200780 | A0A072U3H4 | 98.406 | 251 | 4 | 0 | 25 | 275 | 31 | 281 | 0.0 | 511 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0111310 | Msa1200780 | 0.802347 | 5.857212e-49 | -8.615850e-47 |
Msa0621590 | Msa1200780 | 0.804220 | 2.398002e-49 | -8.615850e-47 |
Msa0743260 | Msa1200780 | 0.809274 | 2.052052e-50 | -8.615850e-47 |
Msa0761800 | Msa1200780 | 0.816733 | 4.748377e-52 | -8.615850e-47 |
Msa0442850 | Msa1200780 | 0.816587 | 5.120462e-52 | -8.615850e-47 |
Msa0462590 | Msa1200780 | 0.805671 | 1.192650e-49 | -8.615850e-47 |
Msa1026760 | Msa1200780 | 0.822555 | 2.224544e-53 | -8.615850e-47 |
Msa1026790 | Msa1200780 | 0.822321 | 2.521546e-53 | -8.615850e-47 |
Msa0288330 | Msa1200780 | 0.812931 | 3.306647e-51 | -8.615850e-47 |
Msa0304920 | Msa1200780 | 0.865428 | 5.949127e-65 | -8.615850e-47 |
Msa1200780 | Msa1205130 | 0.810643 | 1.041040e-50 | -8.615850e-47 |
Msa1200780 | Msa1256540 | -0.801749 | 7.774257e-49 | -8.615850e-47 |
Msa1200780 | Msa1316560 | -0.806348 | 8.594838e-50 | -8.615850e-47 |
Msa1200780 | Msa1417530 | 0.870018 | 2.003636e-66 | -8.615850e-47 |
Msa0553220 | Msa1200780 | -0.804923 | 1.710958e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1200780 | MtrunA17_Chr4g0021571 | 88.768 | 276 | 17 | 2 | 12 | 275 | 1 | 274 | 1.92e-179 | 494 |
Msa1200780 | MtrunA17_Chr8g0370401 | 92.029 | 276 | 10 | 1 | 12 | 275 | 1 | 276 | 2.36e-178 | 492 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1200780 | AT2G25570.3 | 73.896 | 249 | 65 | 0 | 25 | 273 | 32 | 280 | 1.02e-137 | 390 |
Msa1200780 | AT2G25570.1 | 73.896 | 249 | 65 | 0 | 25 | 273 | 32 | 280 | 1.02e-137 | 390 |
Msa1200780 | AT2G25570.2 | 70.430 | 186 | 55 | 0 | 88 | 273 | 11 | 196 | 4.78e-95 | 278 |
Find 68 sgRNAs with CRISPR-Local
Find 410 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAACATTTGGAGTGATTT+TGG | 0.118238 | 8_1:+53731729 | None:intergenic |
CTGAACTTTATTAATGATTC+TGG | 0.153422 | 8_1:+53727022 | None:intergenic |
TCCAGAAGCTCTTTACCTTT+TGG | 0.189427 | 8_1:-53729949 | Msa1200780:CDS |
TATGGATCTCTTCTTCTTAA+AGG | 0.196109 | 8_1:-53728773 | Msa1200780:intron |
TTTGATTGGTATATCTAAAA+TGG | 0.213475 | 8_1:+53726677 | None:intergenic |
CCATGTTCCTGGAGCAAATA+AGG | 0.261543 | 8_1:-53731263 | Msa1200780:CDS |
CCCAAAAGGTAAAGAGCTTC+TGG | 0.279286 | 8_1:+53729948 | None:intergenic |
CAACAGAGCGGCAGCATTAC+TGG | 0.291780 | 8_1:-53730629 | Msa1200780:intron |
TCTAAAATGGCTTGTGCAAC+TGG | 0.306154 | 8_1:+53726690 | None:intergenic |
TGTAGTAATCTTAATAATCT+TGG | 0.334677 | 8_1:+53726831 | None:intergenic |
CGGCGTTGTGGTGTTTCCAT+AGG | 0.354597 | 8_1:-53729881 | Msa1200780:CDS |
ACTGGTAGAAGCAGCAGATA+TGG | 0.373269 | 8_1:-53730611 | Msa1200780:CDS |
ATTCAAAGCATTCCATCCTT+TGG | 0.377234 | 8_1:+53731536 | None:intergenic |
CAAATGGCTTGCAAGGTTAG+AGG | 0.378199 | 8_1:-53726876 | Msa1200780:CDS |
GCAAAAGCAGGCTGTGATCT+TGG | 0.382710 | 8_1:-53726902 | Msa1200780:CDS |
ATGTACTTGTAGGGACATGC+TGG | 0.386246 | 8_1:-53728809 | Msa1200780:intron |
AGTATACATTATGTGTAATA+TGG | 0.388959 | 8_1:-53726751 | Msa1200780:intron |
CATATGAAATACCATGTTCC+TGG | 0.401927 | 8_1:-53731274 | Msa1200780:CDS |
ACCTCAACTAACACTCTTAC+CGG | 0.402028 | 8_1:-53726575 | Msa1200780:three_prime_UTR |
TGCAGAGAGGATTGCATAGC+AGG | 0.416440 | 8_1:-53731584 | Msa1200780:intron |
CCCAATGCATACTGTGCATC+AGG | 0.422036 | 8_1:+53730583 | None:intergenic |
ATTATTGTGAGCTCAATGAT+AGG | 0.425093 | 8_1:-53731494 | Msa1200780:CDS |
TTTGGAGAAAGCTGTGGATC+AGG | 0.425741 | 8_1:-53730057 | Msa1200780:intron |
TTTGCAAGAAGATGTTGCTT+AGG | 0.430555 | 8_1:-53731762 | Msa1200780:CDS |
ATGGTATTTCATATGCAATC+TGG | 0.435552 | 8_1:+53731282 | None:intergenic |
CCAATACTCATGCTAGGTAT+TGG | 0.447830 | 8_1:-53731309 | Msa1200780:CDS |
GTAGTAATCTTAATAATCTT+GGG | 0.452389 | 8_1:+53726832 | None:intergenic |
TTGCAAGAAGATGTTGCTTA+GGG | 0.452552 | 8_1:-53731761 | Msa1200780:CDS |
GCTGGGGCAGCTATTGCATA+TGG | 0.457691 | 8_1:-53728791 | Msa1200780:CDS |
TTGGGTGCTGTATATTTGAC+TGG | 0.459180 | 8_1:-53729930 | Msa1200780:CDS |
GGCGTTGTGGTGTTTCCATA+GGG | 0.465945 | 8_1:-53729880 | Msa1200780:CDS |
TACACAGCCTTATTTGCTCC+AGG | 0.472685 | 8_1:+53731256 | None:intergenic |
ATAAAGAGATACTGTTATGA+TGG | 0.472949 | 8_1:+53726478 | None:intergenic |
CCAATACCTAGCATGAGTAT+TGG | 0.495027 | 8_1:+53731309 | None:intergenic |
TTACCTTCTCTGATGCCCTA+TGG | 0.498613 | 8_1:+53729865 | None:intergenic |
TTGGATTCAAATGGCTTGCA+AGG | 0.500516 | 8_1:-53726883 | Msa1200780:CDS |
TGTTAAGAAAGATATTGCTT+CGG | 0.501886 | 8_1:-53729901 | Msa1200780:CDS |
CTGGTAGAAGCAGCAGATAT+GGG | 0.516752 | 8_1:-53730610 | Msa1200780:CDS |
CCTTATTTGCTCCAGGAACA+TGG | 0.523897 | 8_1:+53731263 | None:intergenic |
GCTGTGATCTTGGATTCAAA+TGG | 0.526301 | 8_1:-53726892 | Msa1200780:CDS |
ACCAACAAATAAAATTATGC+CGG | 0.537397 | 8_1:+53726793 | None:intergenic |
TCAAATATACAGCACCCAAA+AGG | 0.537596 | 8_1:+53729934 | None:intergenic |
CCTGATGCACAGTATGCATT+GGG | 0.538507 | 8_1:-53730583 | Msa1200780:CDS |
GGGTTGTCATTTAAGAGTAG+AGG | 0.540282 | 8_1:-53730563 | Msa1200780:intron |
TTTCAGATAGCTGCAAAAGC+AGG | 0.541336 | 8_1:-53726914 | Msa1200780:CDS |
TCCTTTGGCAATAAACTCCA+TGG | 0.542087 | 8_1:+53731551 | None:intergenic |
TGCAATTGATCCAGTAGAGA+TGG | 0.542124 | 8_1:-53726948 | Msa1200780:CDS |
TGGAGTTTATTGCCAAAGGA+TGG | 0.542248 | 8_1:-53731548 | Msa1200780:CDS |
AACAAATAAAATTATGCCGG+TGG | 0.543071 | 8_1:+53726796 | None:intergenic |
TTATTATTTGGAGAAAGCTG+TGG | 0.545230 | 8_1:-53730063 | Msa1200780:CDS |
AAGATATTGCTTCGGCGTTG+TGG | 0.548648 | 8_1:-53729893 | Msa1200780:CDS |
GCCATGGAGTTTATTGCCAA+AGG | 0.559060 | 8_1:-53731552 | Msa1200780:CDS |
TGTACTTGTAGGGACATGCT+GGG | 0.572949 | 8_1:-53728808 | Msa1200780:intron |
TCCTGATGCACAGTATGCAT+TGG | 0.573129 | 8_1:-53730584 | Msa1200780:CDS |
GAGCGATTACGTTAAGAAGA+GGG | 0.586094 | 8_1:+53731463 | None:intergenic |
TTTCCATAGGGCATCAGAGA+AGG | 0.588045 | 8_1:-53729868 | Msa1200780:intron |
ATAAAGTTCAGTTTGAAGAG+AGG | 0.588848 | 8_1:-53727010 | Msa1200780:CDS |
ACAACTCCAATACTCATGCT+AGG | 0.590913 | 8_1:-53731315 | Msa1200780:CDS |
ACAAATAAAATTATGCCGGT+GGG | 0.597890 | 8_1:+53726797 | None:intergenic |
CGAGCGATTACGTTAAGAAG+AGG | 0.599634 | 8_1:+53731462 | None:intergenic |
TACATATCATCTATTCCCAC+CGG | 0.601310 | 8_1:-53726812 | Msa1200780:three_prime_UTR |
TAGCAGGAACAAGAAAGCCA+TGG | 0.626061 | 8_1:-53731568 | Msa1200780:CDS |
GGTTCATAAATAGACAGCAA+AGG | 0.660807 | 8_1:-53731365 | Msa1200780:intron |
ATGGCTTGCAAGGTTAGAGG+AGG | 0.666157 | 8_1:-53726873 | Msa1200780:CDS |
ACCGGTAAGAGTGTTAGTTG+AGG | 0.671928 | 8_1:+53726574 | None:intergenic |
GGTGCAGCTGCTCAAATGCG+AGG | 0.673473 | 8_1:-53726989 | Msa1200780:CDS |
GGTTAGAGGAGGAAGAGAAG+CGG | 0.689049 | 8_1:-53726862 | Msa1200780:CDS |
GTACTTGTAGGGACATGCTG+GGG | 0.726548 | 8_1:-53728807 | Msa1200780:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATTTACAATTATTTGT+AGG | - | chr8_1:53726529-53726548 | Msa1200780:three_prime_UTR | 10.0% |
!! | TAAATTTACAATTATTTGTA+GGG | - | chr8_1:53726530-53726549 | Msa1200780:three_prime_UTR | 10.0% |
!!! | ATTATTTTTATTATTTCTAG+TGG | - | chr8_1:53728300-53728319 | Msa1200780:intron | 10.0% |
!! | TATAATTGCAAAAATATAAT+CGG | + | chr8_1:53729184-53729203 | None:intergenic | 10.0% |
!!! | AAACATTTTTTTAGTATTTA+TGG | - | chr8_1:53729633-53729652 | Msa1200780:intron | 10.0% |
!!! | AACTTTTTTTTTTACTTTGA+GGG | + | chr8_1:53726771-53726790 | None:intergenic | 15.0% |
!!! | AAACTTTTTTTTTTACTTTG+AGG | + | chr8_1:53726772-53726791 | None:intergenic | 15.0% |
!! | TTCTTCAAATTAAATGTAAA+AGG | - | chr8_1:53726857-53726876 | Msa1200780:CDS | 15.0% |
!!! | GATGAATTTAATTTTACTTA+AGG | - | chr8_1:53727176-53727195 | Msa1200780:intron | 15.0% |
!!! | TAAGGTAATTTTGTTATTTT+AGG | - | chr8_1:53727194-53727213 | Msa1200780:intron | 15.0% |
!!! | AAGGTAATTTTGTTATTTTA+GGG | - | chr8_1:53727195-53727214 | Msa1200780:intron | 15.0% |
!!! | TAAGTTTTTTGTTTTTGTAA+AGG | + | chr8_1:53727282-53727301 | None:intergenic | 15.0% |
!! | AAATGGAAAATAATGAAAAT+GGG | + | chr8_1:53727456-53727475 | None:intergenic | 15.0% |
!! | TCTAAAAATAAAGAAGTAAA+TGG | + | chr8_1:53727989-53728008 | None:intergenic | 15.0% |
!!! | TATATATATGCATTTTTTGA+TGG | + | chr8_1:53728243-53728262 | None:intergenic | 15.0% |
!! | TAAATTTATAGATATGTTCT+TGG | + | chr8_1:53728271-53728290 | None:intergenic | 15.0% |
!!! | CATGTTTTGAAATTTAAATT+TGG | - | chr8_1:53728426-53728445 | Msa1200780:intron | 15.0% |
!! | ATAATTGCAAAAATATAATC+GGG | + | chr8_1:53729183-53729202 | None:intergenic | 15.0% |
!!! | ATAAGTTTTGAAAGAAAAAT+TGG | + | chr8_1:53729944-53729963 | None:intergenic | 15.0% |
!!! | ACATTTAATTTTTTTGCTAT+TGG | - | chr8_1:53730142-53730161 | Msa1200780:intron | 15.0% |
!! | AATAATTTACCAAAAATGTT+TGG | + | chr8_1:53731564-53731583 | None:intergenic | 15.0% |
!!! | TAAACTATTTGAAATTACTT+TGG | + | chr8_1:53731807-53731826 | None:intergenic | 15.0% |
!!! | AAATTACAGTTTTATTTGAT+TGG | + | chr8_1:53732759-53732778 | None:intergenic | 15.0% |
!!! | TATTATCTAAAGTACACTTT+TGG | + | chr8_1:53726512-53726531 | None:intergenic | 20.0% |
!!! | ACTTTTTTTTTTACTTTGAG+GGG | + | chr8_1:53726770-53726789 | None:intergenic | 20.0% |
!! | GCATCAATTATTTATTTATG+AGG | + | chr8_1:53726821-53726840 | None:intergenic | 20.0% |
!!! | TATGTAAACTTGTTTTACTT+AGG | + | chr8_1:53726991-53727010 | None:intergenic | 20.0% |
!! | TTAAGTAGTCAAAAAAAAGT+AGG | + | chr8_1:53727116-53727135 | None:intergenic | 20.0% |
!! | TACAAAAACAAAAAACTTAC+TGG | - | chr8_1:53727283-53727302 | Msa1200780:intron | 20.0% |
!! | GAAATGGAAAATAATGAAAA+TGG | + | chr8_1:53727457-53727476 | None:intergenic | 20.0% |
!! | GAAAATTAAGGAAATGAAAA+GGG | + | chr8_1:53727553-53727572 | None:intergenic | 20.0% |
!!! | AAAAAACTAGTAGTTACTTT+TGG | - | chr8_1:53728497-53728516 | Msa1200780:intron | 20.0% |
!!! | TTTGGAGTTTCTTTATAATA+TGG | - | chr8_1:53728515-53728534 | Msa1200780:intron | 20.0% |
!! | TTATTATCCAAATCATTACA+CGG | - | chr8_1:53728555-53728574 | Msa1200780:intron | 20.0% |
!! | AGTAAACATTAGACTTTAAA+TGG | - | chr8_1:53728662-53728681 | Msa1200780:intron | 20.0% |
!! | AAAACTAATATGAATGTCAT+TGG | + | chr8_1:53728739-53728758 | None:intergenic | 20.0% |
!! | TTGGCTATAATATACTTAAA+CGG | + | chr8_1:53728915-53728934 | None:intergenic | 20.0% |
!! | AATCTGCAAATAGTAATTTA+AGG | + | chr8_1:53728985-53729004 | None:intergenic | 20.0% |
!!! | GATTGTATTTTAACTTTTTG+TGG | - | chr8_1:53729022-53729041 | Msa1200780:intron | 20.0% |
!!! | GCAATTATATTTGATTTCTA+AGG | - | chr8_1:53729195-53729214 | Msa1200780:intron | 20.0% |
!! | GTATAATACTTGAATACATT+AGG | - | chr8_1:53729227-53729246 | Msa1200780:intron | 20.0% |
!! | AAAAAATCTAACAAAAACTC+AGG | + | chr8_1:53729265-53729284 | None:intergenic | 20.0% |
!!! | TCAACAAGCTTTTTATTATT+TGG | - | chr8_1:53729344-53729363 | Msa1200780:intron | 20.0% |
!! | AACATATAACATACACAATA+AGG | + | chr8_1:53729441-53729460 | None:intergenic | 20.0% |
!!! | TTTTCTTTCAAAACTTATAC+TGG | - | chr8_1:53729946-53729965 | Msa1200780:CDS | 20.0% |
!!! | GAATTGTATTCTAAAATTAC+TGG | - | chr8_1:53730049-53730068 | Msa1200780:intron | 20.0% |
!! | TAGTATGAGAATTTCAATAA+AGG | - | chr8_1:53730090-53730109 | Msa1200780:CDS | 20.0% |
!! | AAATTAAATGTTACCTTTCA+AGG | + | chr8_1:53730133-53730152 | None:intergenic | 20.0% |
!!! | GTGTTTTTATTTATGTGTTT+TGG | + | chr8_1:53730176-53730195 | None:intergenic | 20.0% |
!! | TTCTTCATTTAATTAGGATT+CGG | - | chr8_1:53730679-53730698 | Msa1200780:intron | 20.0% |
!!! | GTTTACTTGTTATGAAAATA+TGG | + | chr8_1:53730811-53730830 | None:intergenic | 20.0% |
!! | CATAAATATTCAGAAACTAT+AGG | - | chr8_1:53730858-53730877 | Msa1200780:intron | 20.0% |
!!! | TTCTCACTTTTAACTATATA+AGG | + | chr8_1:53731098-53731117 | None:intergenic | 20.0% |
!!! | ATTTTGTATTCTCTTTTACA+GGG | + | chr8_1:53731133-53731152 | None:intergenic | 20.0% |
!!! | ATATTTATTAGCTTGCATTT+CGG | - | chr8_1:53732029-53732048 | Msa1200780:intron | 20.0% |
!!! | AAGTTATGGTTTTTGATTAA+AGG | + | chr8_1:53732135-53732154 | None:intergenic | 20.0% |
!!! | AACAAAGATTGTTTGTTTTA+AGG | + | chr8_1:53732252-53732271 | None:intergenic | 20.0% |
!! | TTAAAACAAACAATCTTTGT+TGG | - | chr8_1:53732251-53732270 | Msa1200780:intron | 20.0% |
!! | TTAATATCAGACTTTAAACA+GGG | + | chr8_1:53732341-53732360 | None:intergenic | 20.0% |
!! | ATTAATATCAGACTTTAAAC+AGG | + | chr8_1:53732342-53732361 | None:intergenic | 20.0% |
!! | GTCTGATATTAATAAAAGAA+AGG | - | chr8_1:53732349-53732368 | Msa1200780:intron | 20.0% |
!! | GTAGTAATCTTAATAATCTT+GGG | + | chr8_1:53732590-53732609 | None:intergenic | 20.0% |
!! | TGTAGTAATCTTAATAATCT+TGG | + | chr8_1:53732591-53732610 | None:intergenic | 20.0% |
!! | AGTATACATTATGTGTAATA+TGG | - | chr8_1:53732668-53732687 | Msa1200780:intron | 20.0% |
!! | TTTGATTGGTATATCTAAAA+TGG | + | chr8_1:53732745-53732764 | None:intergenic | 20.0% |
!!! | ACTATAAGATTTTTAACTAC+CGG | + | chr8_1:53732866-53732885 | None:intergenic | 20.0% |
!! | AGTTAAAAATCTTATAGTTG+AGG | - | chr8_1:53732868-53732887 | Msa1200780:intron | 20.0% |
!! | GTTAAAAATCTTATAGTTGA+GGG | - | chr8_1:53732869-53732888 | Msa1200780:intron | 20.0% |
!! | CGACTTAAAATTTTCACTTT+TGG | - | chr8_1:53726619-53726638 | Msa1200780:three_prime_UTR | 25.0% |
!! | TTTGGATGTATATTTCTATG+CGG | - | chr8_1:53726708-53726727 | Msa1200780:intron | 25.0% |
!!! | CTTTTTTTTTTACTTTGAGG+GGG | + | chr8_1:53726769-53726788 | None:intergenic | 25.0% |
!!! | ATAAATTAGTATCGATTGAG+AGG | - | chr8_1:53726892-53726911 | Msa1200780:CDS | 25.0% |
! | ATCATTAAACAAGTTTGAAG+AGG | - | chr8_1:53727018-53727037 | Msa1200780:CDS | 25.0% |
! | AGGTCGTTTAAATTCAATTT+AGG | + | chr8_1:53727096-53727115 | None:intergenic | 25.0% |
!! | AAGAACTATGCAAAAAGTTT+TGG | - | chr8_1:53727154-53727173 | Msa1200780:intron | 25.0% |
! | GAAAATAATGAAAATGGGAT+TGG | + | chr8_1:53727451-53727470 | None:intergenic | 25.0% |
!! | TTCATTATTTTCCATTTCTC+TGG | - | chr8_1:53727459-53727478 | Msa1200780:intron | 25.0% |
! | CGAAAATTAAGGAAATGAAA+AGG | + | chr8_1:53727554-53727573 | None:intergenic | 25.0% |
! | TAAAAAGCTCACGAAAATTA+AGG | + | chr8_1:53727565-53727584 | None:intergenic | 25.0% |
!! | TTAATTTTCGTGAGCTTTTT+AGG | - | chr8_1:53727564-53727583 | Msa1200780:intron | 25.0% |
! | AATTGGAAAAGAGAAACATT+TGG | + | chr8_1:53727704-53727723 | None:intergenic | 25.0% |
! | CATGAAGAAACAAAACATAA+CGG | + | chr8_1:53728207-53728226 | None:intergenic | 25.0% |
!!! | TGCATTTTTTGATGGAAAAT+AGG | + | chr8_1:53728235-53728254 | None:intergenic | 25.0% |
!!! | TATTATTTCTAGTGGAAAGA+CGG | - | chr8_1:53728308-53728327 | Msa1200780:intron | 25.0% |
! | ACATTAGACTTTAAATGGAA+AGG | - | chr8_1:53728667-53728686 | Msa1200780:intron | 25.0% |
!!! | TGACATTCATATTAGTTTTG+TGG | - | chr8_1:53728740-53728759 | Msa1200780:intron | 25.0% |
!! | AACGGATTTCTAACAATATA+AGG | + | chr8_1:53728897-53728916 | None:intergenic | 25.0% |
! | GTTATAACTTATATGACCTT+CGG | - | chr8_1:53729056-53729075 | Msa1200780:intron | 25.0% |
! | TTATAACTTATATGACCTTC+GGG | - | chr8_1:53729057-53729076 | Msa1200780:intron | 25.0% |
!!! | TTTGATTTCTAAGGTTTACT+TGG | - | chr8_1:53729204-53729223 | Msa1200780:intron | 25.0% |
!!! | TTGATTTCTAAGGTTTACTT+GGG | - | chr8_1:53729205-53729224 | Msa1200780:intron | 25.0% |
! | TGTTAAGAAAGATATTGCTT+CGG | - | chr8_1:53729518-53729537 | Msa1200780:intron | 25.0% |
!! | CTTTGAAAAACTTTAACTAC+TGG | + | chr8_1:53729908-53729927 | None:intergenic | 25.0% |
!! | TACTATGACTATTTCTTGTT+GGG | + | chr8_1:53730075-53730094 | None:intergenic | 25.0% |
!! | ATACTATGACTATTTCTTGT+TGG | + | chr8_1:53730076-53730095 | None:intergenic | 25.0% |
! | ACACATAAATAAAAACACAC+TGG | - | chr8_1:53730178-53730197 | Msa1200780:intron | 25.0% |
! | CACATAAATAAAAACACACT+GGG | - | chr8_1:53730179-53730198 | Msa1200780:intron | 25.0% |
! | TTCCTCCTTTAATTATGATT+CGG | + | chr8_1:53730309-53730328 | None:intergenic | 25.0% |
!! | ACATTTTCATGTGTAGATAA+AGG | + | chr8_1:53730446-53730465 | None:intergenic | 25.0% |
! | TAGATACATTCGATTAAACT+CGG | + | chr8_1:53730503-53730522 | None:intergenic | 25.0% |
! | AGTAAACATTCAGAAACTAT+AGG | - | chr8_1:53730824-53730843 | Msa1200780:intron | 25.0% |
!! | TTCTAACTTGTGAAATTAGT+AGG | + | chr8_1:53731030-53731049 | None:intergenic | 25.0% |
!! | GAAGTTTACACGTTTTTAAT+AGG | - | chr8_1:53731047-53731066 | Msa1200780:intron | 25.0% |
! | GTTAAAAGTGAGAATACAAA+AGG | - | chr8_1:53731104-53731123 | Msa1200780:intron | 25.0% |
!! | CATTTTGTATTCTCTTTTAC+AGG | + | chr8_1:53731134-53731153 | None:intergenic | 25.0% |
!! | TTATCAGAAAACACGTTTTT+AGG | - | chr8_1:53731166-53731185 | Msa1200780:intron | 25.0% |
!! | TATCAGAAAACACGTTTTTA+GGG | - | chr8_1:53731167-53731186 | Msa1200780:intron | 25.0% |
! | TTATTGAATACTTTGCACAA+TGG | - | chr8_1:53731579-53731598 | Msa1200780:CDS | 25.0% |
! | TATTGAATACTTTGCACAAT+GGG | - | chr8_1:53731580-53731599 | Msa1200780:CDS | 25.0% |
!!! | ACTTTCAGTTTTAGAAAGTT+TGG | + | chr8_1:53731674-53731693 | None:intergenic | 25.0% |
!!! | AAATAGAAGTTCTAGCATTT+TGG | - | chr8_1:53731967-53731986 | Msa1200780:intron | 25.0% |
! | TTTCACATTCTTCATAACAA+AGG | - | chr8_1:53732005-53732024 | Msa1200780:intron | 25.0% |
! | AAGGATGAGAAAAATAACAA+GGG | + | chr8_1:53732116-53732135 | None:intergenic | 25.0% |
! | AAAGGATGAGAAAAATAACA+AGG | + | chr8_1:53732117-53732136 | None:intergenic | 25.0% |
! | ATGGTTTAGTTAGAAGTTAA+AGG | + | chr8_1:53732183-53732202 | None:intergenic | 25.0% |
! | CTGAACTTTATTAATGATTC+TGG | + | chr8_1:53732400-53732419 | None:intergenic | 25.0% |
! | ACCAACAAATAAAATTATGC+CGG | + | chr8_1:53732629-53732648 | None:intergenic | 25.0% |
! | TTTATACAGAAAAACAGACA+AGG | + | chr8_1:53732707-53732726 | None:intergenic | 25.0% |
ATACATCCAAACTTTACCAT+GGG | + | chr8_1:53726699-53726718 | None:intergenic | 30.0% | |
TATACATCCAAACTTTACCA+TGG | + | chr8_1:53726700-53726719 | None:intergenic | 30.0% | |
AGGTTAAAGAGCAAATTTAG+AGG | + | chr8_1:53727334-53727353 | None:intergenic | 30.0% | |
ATAATGAAAATGGGATTGGA+TGG | + | chr8_1:53727447-53727466 | None:intergenic | 30.0% | |
ATTAAGGAAATGAAAAGGGT+CGG | + | chr8_1:53727549-53727568 | None:intergenic | 30.0% | |
CTGTAACATAGAAACAAGAA+AGG | + | chr8_1:53727627-53727646 | None:intergenic | 30.0% | |
!! | CTTTCTTGTTTCTATGTTAC+AGG | - | chr8_1:53727625-53727644 | Msa1200780:intron | 30.0% |
!! | GAAACATTTGGAGTGATTTT+GGG | + | chr8_1:53727692-53727711 | None:intergenic | 30.0% |
!! | AGAAACATTTGGAGTGATTT+TGG | + | chr8_1:53727693-53727712 | None:intergenic | 30.0% |
! | TCTTTTCCAATTCAATCAAC+AGG | - | chr8_1:53727712-53727731 | Msa1200780:intron | 30.0% |
ATTATTGTGAGCTCAATGAT+AGG | - | chr8_1:53727925-53727944 | Msa1200780:intron | 30.0% | |
TATGAACCACAAATAAGCAA+TGG | + | chr8_1:53728042-53728061 | None:intergenic | 30.0% | |
ATGGTATTTCATATGCAATC+TGG | + | chr8_1:53728140-53728159 | None:intergenic | 30.0% | |
TGCTATGAAATTGTTTGTGT+TGG | - | chr8_1:53728589-53728608 | Msa1200780:intron | 30.0% | |
! | ATTGACTCAATCTTCATGTT+TGG | + | chr8_1:53728934-53728953 | None:intergenic | 30.0% |
AATAGTAATTTAAGGAGGCA+TGG | + | chr8_1:53728977-53728996 | None:intergenic | 30.0% | |
CTGCAAATAGTAATTTAAGG+AGG | + | chr8_1:53728982-53729001 | None:intergenic | 30.0% | |
TCTTAATGCTGAATTACTAG+TGG | - | chr8_1:53729135-53729154 | Msa1200780:intron | 30.0% | |
!! | AAAAAGCTTGTTGATCTGAA+TGG | + | chr8_1:53729338-53729357 | None:intergenic | 30.0% |
TTATTATTTGGAGAAAGCTG+TGG | - | chr8_1:53729356-53729375 | Msa1200780:intron | 30.0% | |
AAAATGTTTAATACAGTGCG+AGG | + | chr8_1:53729622-53729641 | None:intergenic | 30.0% | |
! | TACTACTAAGCTTTTCATGA+AGG | + | chr8_1:53729830-53729849 | None:intergenic | 30.0% |
AGTAATCAATGAAACTCTAG+AGG | + | chr8_1:53729872-53729891 | None:intergenic | 30.0% | |
ATAAATAAAAACACACTGGG+AGG | - | chr8_1:53730182-53730201 | Msa1200780:intron | 30.0% | |
TAAATAAAAACACACTGGGA+GGG | - | chr8_1:53730183-53730202 | Msa1200780:intron | 30.0% | |
! | TTAATTATGATTCGGCGAAA+GGG | + | chr8_1:53730301-53730320 | None:intergenic | 30.0% |
! | TTTAATTATGATTCGGCGAA+AGG | + | chr8_1:53730302-53730321 | None:intergenic | 30.0% |
TTTCGCCGAATCATAATTAA+AGG | - | chr8_1:53730301-53730320 | Msa1200780:intron | 30.0% | |
ATGTGTAGATAAAGGAACAT+CGG | + | chr8_1:53730438-53730457 | None:intergenic | 30.0% | |
AGATACATTCGATTAAACTC+GGG | + | chr8_1:53730502-53730521 | None:intergenic | 30.0% | |
!!! | CTTGTTCAGAGATTTTGATT+TGG | - | chr8_1:53730570-53730589 | Msa1200780:CDS | 30.0% |
ACTTTATTCCATGTACTTGT+AGG | - | chr8_1:53730600-53730619 | Msa1200780:CDS | 30.0% | |
CTTTATTCCATGTACTTGTA+GGG | - | chr8_1:53730601-53730620 | Msa1200780:CDS | 30.0% | |
TATGGATCTCTTCTTCTTAA+AGG | - | chr8_1:53730646-53730665 | Msa1200780:intron | 30.0% | |
CTTGCGTTCTTCATTTAATT+AGG | - | chr8_1:53730673-53730692 | Msa1200780:intron | 30.0% | |
! | CTTTTAAATGGTGTACTAGT+AGG | + | chr8_1:53730903-53730922 | None:intergenic | 30.0% |
CTACTAGTACACCATTTAAA+AGG | - | chr8_1:53730901-53730920 | Msa1200780:intron | 30.0% | |
! | GTAGAAAACGACCTTTTAAA+TGG | + | chr8_1:53730915-53730934 | None:intergenic | 30.0% |
! | CGTGTTTTCTGATAAAAATG+AGG | + | chr8_1:53731161-53731180 | None:intergenic | 30.0% |
TCTACAAAAAATGCAGAGTT+GGG | + | chr8_1:53731203-53731222 | None:intergenic | 30.0% | |
TTCTACAAAAAATGCAGAGT+TGG | + | chr8_1:53731204-53731223 | None:intergenic | 30.0% | |
TTCAATGAAAAAGATGCAAG+CGG | + | chr8_1:53731246-53731265 | None:intergenic | 30.0% | |
GCAAAAATTGAAAGTGGTTT+GGG | + | chr8_1:53731325-53731344 | None:intergenic | 30.0% | |
TCACCTTAAGAACATGTAAT+AGG | - | chr8_1:53731395-53731414 | Msa1200780:intron | 30.0% | |
ACACCTATTACATGTTCTTA+AGG | + | chr8_1:53731401-53731420 | None:intergenic | 30.0% | |
!! | TTACCAAAAATGTTTGGTGT+CGG | + | chr8_1:53731558-53731577 | None:intergenic | 30.0% |
! | TGAAAGTCATGATGATGAAT+AGG | - | chr8_1:53731687-53731706 | Msa1200780:intron | 30.0% |
TGTCTATTACATGTTCTTCA+GGG | + | chr8_1:53731748-53731767 | None:intergenic | 30.0% | |
ATGTCTATTACATGTTCTTC+AGG | + | chr8_1:53731749-53731768 | None:intergenic | 30.0% | |
GTAATAGACATCAATAGCTT+AGG | - | chr8_1:53731758-53731777 | Msa1200780:CDS | 30.0% | |
! | CAAGATTGTTACATTAGTCT+AGG | + | chr8_1:53731942-53731961 | None:intergenic | 30.0% |
ACTTCTAACTAAACCATGTT+TGG | - | chr8_1:53732186-53732205 | Msa1200780:intron | 30.0% | |
CTTCTAACTAAACCATGTTT+GGG | - | chr8_1:53732187-53732206 | Msa1200780:intron | 30.0% | |
CAAGACACATTAATACCAAT+AGG | - | chr8_1:53732226-53732245 | Msa1200780:intron | 30.0% | |
!!! | TTGTTTGTTTTAAGGCCTAT+TGG | + | chr8_1:53732244-53732263 | None:intergenic | 30.0% |
! | CACTGTACTTTTATGTTTTC+TGG | - | chr8_1:53732291-53732310 | Msa1200780:intron | 30.0% |
! | TGTACTTTTATGTTTTCTGG+TGG | - | chr8_1:53732294-53732313 | Msa1200780:intron | 30.0% |
!! | GTACTTTTATGTTTTCTGGT+GGG | - | chr8_1:53732295-53732314 | Msa1200780:intron | 30.0% |
ATAAAGTTCAGTTTGAAGAG+AGG | - | chr8_1:53732409-53732428 | Msa1200780:intron | 30.0% | |
ACAAATAAAATTATGCCGGT+GGG | + | chr8_1:53732625-53732644 | None:intergenic | 30.0% | |
AACAAATAAAATTATGCCGG+TGG | + | chr8_1:53732626-53732645 | None:intergenic | 30.0% | |
!! | ACCGGCATAATTTTATTTGT+TGG | - | chr8_1:53732625-53732644 | Msa1200780:intron | 30.0% |
TGTAATATGGTGACTGATAA+GGG | - | chr8_1:53732681-53732700 | Msa1200780:intron | 30.0% | |
ACCATGGGCAATACAAATAA+GGG | + | chr8_1:53726684-53726703 | None:intergenic | 35.0% | |
TACCATGGGCAATACAAATA+AGG | + | chr8_1:53726685-53726704 | None:intergenic | 35.0% | |
GGATGCATTCATATGAGATT+GGG | - | chr8_1:53726735-53726754 | Msa1200780:intron | 35.0% | |
GATGCATTCATATGAGATTG+GGG | - | chr8_1:53726736-53726755 | Msa1200780:intron | 35.0% | |
ATGCATTCATATGAGATTGG+GGG | - | chr8_1:53726737-53726756 | Msa1200780:intron | 35.0% | |
GTGTAGCATGAACTATAAAC+AGG | - | chr8_1:53727217-53727236 | Msa1200780:intron | 35.0% | |
!!! | GGTATTTTGGTATTTTCGAG+AGG | + | chr8_1:53727354-53727373 | None:intergenic | 35.0% |
TGATCAGTTAACCAGTTGAT+CGG | + | chr8_1:53727378-53727397 | None:intergenic | 35.0% | |
! | TTTGCAAGAAGATGTTGCTT+AGG | - | chr8_1:53727657-53727676 | Msa1200780:intron | 35.0% |
! | TTGCAAGAAGATGTTGCTTA+GGG | - | chr8_1:53727658-53727677 | Msa1200780:intron | 35.0% |
! | TACATGCCTGTTGATTGAAT+TGG | + | chr8_1:53727721-53727740 | None:intergenic | 35.0% |
!! | CAGTGCTCTAAAGTACAATT+AGG | - | chr8_1:53727762-53727781 | Msa1200780:intron | 35.0% |
! | GCAGATTTGCTTATCTTTGT+TGG | - | chr8_1:53727801-53727820 | Msa1200780:intron | 35.0% |
! | ATTCAAAGCATTCCATCCTT+TGG | + | chr8_1:53727886-53727905 | None:intergenic | 35.0% |
GATAGACCATTGCTTATTTG+TGG | - | chr8_1:53728033-53728052 | Msa1200780:intron | 35.0% | |
GGTTCATAAATAGACAGCAA+AGG | - | chr8_1:53728054-53728073 | Msa1200780:intron | 35.0% | |
!! | GGAAAATTTTGAGCTTGCTT+TGG | - | chr8_1:53728075-53728094 | Msa1200780:intron | 35.0% |
!! | AAATTTTGAGCTTGCTTTGG+AGG | - | chr8_1:53728078-53728097 | Msa1200780:intron | 35.0% |
CATATGAAATACCATGTTCC+TGG | - | chr8_1:53728145-53728164 | Msa1200780:intron | 35.0% | |
GAAGAAACAAAACATAACGG+AGG | + | chr8_1:53728204-53728223 | None:intergenic | 35.0% | |
GAAAAGAACTGTGTTGTCTA+GGG | - | chr8_1:53728448-53728467 | Msa1200780:intron | 35.0% | |
! | GGGCATTTTGAACAGAAAAT+AGG | - | chr8_1:53728468-53728487 | Msa1200780:intron | 35.0% |
TGAGTAGCTATTCACAAGAA+TGG | - | chr8_1:53728636-53728655 | Msa1200780:intron | 35.0% | |
TTGCAAAAATATAATCGGGC+AGG | + | chr8_1:53729179-53729198 | None:intergenic | 35.0% | |
ATATGTTTGGAGACAGAATG+AGG | - | chr8_1:53729308-53729327 | Msa1200780:intron | 35.0% | |
GACAGGATCAAAGTTACATA+AGG | + | chr8_1:53729395-53729414 | None:intergenic | 35.0% | |
! | GATGCATTTGAAATTGTGAC+AGG | + | chr8_1:53729412-53729431 | None:intergenic | 35.0% |
TCAAATATACAGCACCCAAA+AGG | + | chr8_1:53729488-53729507 | None:intergenic | 35.0% | |
! | TGTATTCACTTTAAGAGCGA+GGG | + | chr8_1:53729757-53729776 | None:intergenic | 35.0% |
! | ATGTATTCACTTTAAGAGCG+AGG | + | chr8_1:53729758-53729777 | None:intergenic | 35.0% |
CAATAAAGGTTCAGTATGCA+TGG | - | chr8_1:53730104-53730123 | Msa1200780:intron | 35.0% | |
!!! | TTTTTTTGCTATTGGCCTAG+TGG | - | chr8_1:53730150-53730169 | Msa1200780:intron | 35.0% |
!!! | ATTTATGTGTTTTGGCCACT+AGG | + | chr8_1:53730168-53730187 | None:intergenic | 35.0% |
TGATTTATAGCATGCAGTCA+GGG | - | chr8_1:53730250-53730269 | Msa1200780:intron | 35.0% | |
AAATGTGTTGTCTTTAGCGT+AGG | + | chr8_1:53730388-53730407 | None:intergenic | 35.0% | |
ATTCAGAAACTATAGGCACT+TGG | - | chr8_1:53730831-53730850 | Msa1200780:intron | 35.0% | |
!!! | TCTGCATTTTTTGTAGAACC+AGG | - | chr8_1:53731206-53731225 | Msa1200780:intron | 35.0% |
!! | GTACAATCCAACCGATTTTA+CGG | - | chr8_1:53731277-53731296 | Msa1200780:CDS | 35.0% |
GGCAAAAATTGAAAGTGGTT+TGG | + | chr8_1:53731326-53731345 | None:intergenic | 35.0% | |
GTAATAGGTGTCAATAGCTT+AGG | - | chr8_1:53731410-53731429 | Msa1200780:intron | 35.0% | |
TTGTACTATAGAGGAAACTC+AGG | - | chr8_1:53731444-53731463 | Msa1200780:intron | 35.0% | |
! | AATCCGACACCAAACATTTT+TGG | - | chr8_1:53731552-53731571 | Msa1200780:CDS | 35.0% |
GTCTATTACATGTTCTTCAG+GGG | + | chr8_1:53731747-53731766 | None:intergenic | 35.0% | |
! | AAAGCAGTGCTGGAATAAAA+GGG | + | chr8_1:53732079-53732098 | None:intergenic | 35.0% |
! | AAAAGCAGTGCTGGAATAAA+AGG | + | chr8_1:53732080-53732099 | None:intergenic | 35.0% |
ATTATCAGAAAAAGCAGTGC+TGG | + | chr8_1:53732089-53732108 | None:intergenic | 35.0% | |
! | GTTTGAGACTGTTGAAGTTA+TGG | + | chr8_1:53732149-53732168 | None:intergenic | 35.0% |
ACTTCAACAGTCTCAAACTA+TGG | - | chr8_1:53732151-53732170 | Msa1200780:intron | 35.0% | |
CTGTGTATAATTCCCAAACA+TGG | + | chr8_1:53732202-53732221 | None:intergenic | 35.0% | |
CATGTTTGGGAATTATACAC+AGG | - | chr8_1:53732200-53732219 | Msa1200780:intron | 35.0% | |
! | TTTTCTTTTGCCATCTCTAC+TGG | + | chr8_1:53732484-53732503 | None:intergenic | 35.0% |
TACATATCATCTATTCCCAC+CGG | - | chr8_1:53732607-53732626 | Msa1200780:intron | 35.0% | |
GTGTAATATGGTGACTGATA+AGG | - | chr8_1:53732680-53732699 | Msa1200780:intron | 35.0% | |
GAAATGTTAACCAGTACCCT+CGG | - | chr8_1:53726552-53726571 | Msa1200780:three_prime_UTR | 40.0% | |
AAATGTTAACCAGTACCCTC+GGG | - | chr8_1:53726553-53726572 | Msa1200780:three_prime_UTR | 40.0% | |
! | ACCCTTATTTGTATTGCCCA+TGG | - | chr8_1:53726680-53726699 | Msa1200780:three_prime_UTR | 40.0% |
GTATTGCCCATGGTAAAGTT+TGG | - | chr8_1:53726690-53726709 | Msa1200780:three_prime_UTR | 40.0% | |
! | GGATGTATATTTCTATGCGG+TGG | - | chr8_1:53726711-53726730 | Msa1200780:intron | 40.0% |
! | TGTATATTTCTATGCGGTGG+CGG | - | chr8_1:53726714-53726733 | Msa1200780:intron | 40.0% |
CGGATGCATTCATATGAGAT+TGG | - | chr8_1:53726734-53726753 | Msa1200780:intron | 40.0% | |
ATCGGAACAATAATGGTAGC+GGG | + | chr8_1:53727508-53727527 | None:intergenic | 40.0% | |
CATCGGAACAATAATGGTAG+CGG | + | chr8_1:53727509-53727528 | None:intergenic | 40.0% | |
AGCATGCATCGGAACAATAA+TGG | + | chr8_1:53727515-53727534 | None:intergenic | 40.0% | |
AAATCGCTAGTAGCATGCAT+CGG | + | chr8_1:53727526-53727545 | None:intergenic | 40.0% | |
!! | CTTGTTTCTATGTTACAGGC+AGG | - | chr8_1:53727629-53727648 | Msa1200780:intron | 40.0% |
GGATATTGTTGTATGCAGAG+AGG | - | chr8_1:53727822-53727841 | Msa1200780:intron | 40.0% | |
TCCTTTGGCAATAAACTCCA+TGG | + | chr8_1:53727871-53727890 | None:intergenic | 40.0% | |
TGGAGTTTATTGCCAAAGGA+TGG | - | chr8_1:53727871-53727890 | Msa1200780:intron | 40.0% | |
GAGCGATTACGTTAAGAAGA+GGG | + | chr8_1:53727959-53727978 | None:intergenic | 40.0% | |
ACAACTCCAATACTCATGCT+AGG | - | chr8_1:53728104-53728123 | Msa1200780:intron | 40.0% | |
CCAATACCTAGCATGAGTAT+TGG | + | chr8_1:53728113-53728132 | None:intergenic | 40.0% | |
CCAATACTCATGCTAGGTAT+TGG | - | chr8_1:53728110-53728129 | Msa1200780:intron | 40.0% | |
GGAAAAGAACTGTGTTGTCT+AGG | - | chr8_1:53728447-53728466 | Msa1200780:intron | 40.0% | |
AGAAACGCCGTGTAATGATT+TGG | + | chr8_1:53728565-53728584 | None:intergenic | 40.0% | |
! | GGGTTGTCATTTAAGAGTAG+AGG | - | chr8_1:53728856-53728875 | Msa1200780:intron | 40.0% |
GTCATTTAAGAGTAGAGGTG+AGG | - | chr8_1:53728861-53728880 | Msa1200780:intron | 40.0% | |
! | AAGGAGGCATGGATGAATAA+TGG | + | chr8_1:53728966-53728985 | None:intergenic | 40.0% |
GGGCAGGACAATAAAAACAA+AGG | + | chr8_1:53729163-53729182 | None:intergenic | 40.0% | |
! | TCCAGAAGCTCTTTACCTTT+TGG | - | chr8_1:53729470-53729489 | Msa1200780:intron | 40.0% |
! | CCAGAAGCTCTTTACCTTTT+GGG | - | chr8_1:53729471-53729490 | Msa1200780:intron | 40.0% |
! | TTGGGTGCTGTATATTTGAC+TGG | - | chr8_1:53729489-53729508 | Msa1200780:intron | 40.0% |
!!! | TATCCGTACTTTTTCACGTG+CGG | - | chr8_1:53729666-53729685 | Msa1200780:intron | 40.0% |
! | CGGTGATTTAGAATGAGTTC+AGG | - | chr8_1:53729686-53729705 | Msa1200780:intron | 40.0% |
TAAAGGTTCAGTATGCATGG+AGG | - | chr8_1:53730107-53730126 | Msa1200780:intron | 40.0% | |
GTGATTTATAGCATGCAGTC+AGG | - | chr8_1:53730249-53730268 | Msa1200780:intron | 40.0% | |
CGCCGAATCATAATTAAAGG+AGG | - | chr8_1:53730304-53730323 | Msa1200780:intron | 40.0% | |
ATAACCAAGTGCAGCTTGAA+AGG | + | chr8_1:53730759-53730778 | None:intergenic | 40.0% | |
TTTCAAGCTGCACTTGGTTA+TGG | - | chr8_1:53730758-53730777 | Msa1200780:intron | 40.0% | |
ATGAAAAAGATGCAAGCGGT+CGG | + | chr8_1:53731242-53731261 | None:intergenic | 40.0% | |
!! | AACCGATTTTACGGCTTTGT+GGG | - | chr8_1:53731286-53731305 | Msa1200780:CDS | 40.0% |
!! | CTGGCTTGTTTGTACTATAG+AGG | - | chr8_1:53731435-53731454 | Msa1200780:intron | 40.0% |
TCAGGAAAGTAACGTCAAGT+AGG | - | chr8_1:53731462-53731481 | Msa1200780:intron | 40.0% | |
TTTACAACAGACCTTCCTAG+TGG | - | chr8_1:53731632-53731651 | Msa1200780:intron | 40.0% | |
GAATCATCTCTAACTCCACT+AGG | + | chr8_1:53731650-53731669 | None:intergenic | 40.0% | |
ACATCAATAGCTTAGGTGCT+GGG | - | chr8_1:53731765-53731784 | Msa1200780:CDS | 40.0% | |
GCTTAATCTGATCAGTGATC+AGG | + | chr8_1:53731854-53731873 | None:intergenic | 40.0% | |
!! | TTTAACTCCAGTTCAGGTTG+TGG | + | chr8_1:53731880-53731899 | None:intergenic | 40.0% |
TGCTTGTTTAACTCCAGTTC+AGG | + | chr8_1:53731886-53731905 | None:intergenic | 40.0% | |
AAGAAAGGATATTGTGCCTC+AGG | - | chr8_1:53732364-53732383 | Msa1200780:intron | 40.0% | |
!!! | TTCTGGAATTTTGACACCTG+AGG | + | chr8_1:53732383-53732402 | None:intergenic | 40.0% |
TGCAATTGATCCAGTAGAGA+TGG | - | chr8_1:53732471-53732490 | Msa1200780:intron | 40.0% | |
TTTCAGATAGCTGCAAAAGC+AGG | - | chr8_1:53732505-53732524 | Msa1200780:intron | 40.0% | |
GCTGTGATCTTGGATTCAAA+TGG | - | chr8_1:53732527-53732546 | Msa1200780:intron | 40.0% | |
! | TTGGATTCAAATGGCTTGCA+AGG | - | chr8_1:53732536-53732555 | Msa1200780:intron | 40.0% |
! | TCTAAAATGGCTTGTGCAAC+TGG | + | chr8_1:53732732-53732751 | None:intergenic | 40.0% |
ACCTCAACTAACACTCTTAC+CGG | - | chr8_1:53732844-53732863 | Msa1200780:intron | 40.0% | |
AATGTTAACCAGTACCCTCG+GGG | - | chr8_1:53726554-53726573 | Msa1200780:three_prime_UTR | 45.0% | |
CATGTTAACCAGTGTCCTGA+GGG | + | chr8_1:53726660-53726679 | None:intergenic | 45.0% | |
TCATGTTAACCAGTGTCCTG+AGG | + | chr8_1:53726661-53726680 | None:intergenic | 45.0% | |
!!! | CCAGTTGATCGGAGGTATTT+TGG | + | chr8_1:53727367-53727386 | None:intergenic | 45.0% |
CCAAAATACCTCCGATCAAC+TGG | - | chr8_1:53727364-53727383 | Msa1200780:intron | 45.0% | |
TCAGTTAACCAGTTGATCGG+AGG | + | chr8_1:53727375-53727394 | None:intergenic | 45.0% | |
AGCGGGTAAAGCTATTATGG+CGG | + | chr8_1:53727491-53727510 | None:intergenic | 45.0% | |
!! | GGTAGCGGGTAAAGCTATTA+TGG | + | chr8_1:53727494-53727513 | None:intergenic | 45.0% |
TAGCAGGAACAAGAAAGCCA+TGG | - | chr8_1:53727851-53727870 | Msa1200780:intron | 45.0% | |
GCCATGGAGTTTATTGCCAA+AGG | - | chr8_1:53727867-53727886 | Msa1200780:intron | 45.0% | |
CGAGCGATTACGTTAAGAAG+AGG | + | chr8_1:53727960-53727979 | None:intergenic | 45.0% | |
! | CCTTATTTGCTCCAGGAACA+TGG | + | chr8_1:53728159-53728178 | None:intergenic | 45.0% |
CCATGTTCCTGGAGCAAATA+AGG | - | chr8_1:53728156-53728175 | Msa1200780:intron | 45.0% | |
!! | TACACAGCCTTATTTGCTCC+AGG | + | chr8_1:53728166-53728185 | None:intergenic | 45.0% |
!!! | ATTTTTTCCGCCTTTTCCCC+TGG | - | chr8_1:53728767-53728786 | Msa1200780:intron | 45.0% |
ACTGGTAGAAGCAGCAGATA+TGG | - | chr8_1:53728808-53728827 | Msa1200780:intron | 45.0% | |
CTGGTAGAAGCAGCAGATAT+GGG | - | chr8_1:53728809-53728828 | Msa1200780:intron | 45.0% | |
TCCTGATGCACAGTATGCAT+TGG | - | chr8_1:53728835-53728854 | Msa1200780:intron | 45.0% | |
CCTGATGCACAGTATGCATT+GGG | - | chr8_1:53728836-53728855 | Msa1200780:intron | 45.0% | |
TATGACCTTCGGGATGAGAA+TGG | - | chr8_1:53729067-53729086 | Msa1200780:intron | 45.0% | |
!! | TGGCTAGTCTGCATGCAAAA+TGG | - | chr8_1:53729091-53729110 | Msa1200780:intron | 45.0% |
TTTGGAGAAAGCTGTGGATC+AGG | - | chr8_1:53729362-53729381 | Msa1200780:intron | 45.0% | |
AAAGAGCTTCTGGATGCAAC+TGG | + | chr8_1:53729464-53729483 | None:intergenic | 45.0% | |
CCCAAAAGGTAAAGAGCTTC+TGG | + | chr8_1:53729474-53729493 | None:intergenic | 45.0% | |
AAGATATTGCTTCGGCGTTG+TGG | - | chr8_1:53729526-53729545 | Msa1200780:intron | 45.0% | |
! | TTTCCATAGGGCATCAGAGA+AGG | - | chr8_1:53729551-53729570 | Msa1200780:intron | 45.0% |
TTACCTTCTCTGATGCCCTA+TGG | + | chr8_1:53729557-53729576 | None:intergenic | 45.0% | |
TCACCGCACGTGAAAAAGTA+CGG | + | chr8_1:53729672-53729691 | None:intergenic | 45.0% | |
! | TGGTCAGGAGCTTTTAAGCA+TGG | - | chr8_1:53730217-53730236 | Msa1200780:intron | 45.0% |
TTTATAGCATGCAGTCAGGG+AGG | - | chr8_1:53730253-53730272 | Msa1200780:intron | 45.0% | |
AGCATGTCCCTACAAGTACA+TGG | + | chr8_1:53730611-53730630 | None:intergenic | 45.0% | |
ATGTACTTGTAGGGACATGC+TGG | - | chr8_1:53730610-53730629 | Msa1200780:CDS | 45.0% | |
TGTACTTGTAGGGACATGCT+GGG | - | chr8_1:53730611-53730630 | Msa1200780:CDS | 45.0% | |
AGTGCAGCTTGAAAGGAAGT+GGG | + | chr8_1:53730752-53730771 | None:intergenic | 45.0% | |
AAGTGCAGCTTGAAAGGAAG+TGG | + | chr8_1:53730753-53730772 | None:intergenic | 45.0% | |
ACTTCCTTTCAAGCTGCACT+TGG | - | chr8_1:53730752-53730771 | Msa1200780:intron | 45.0% | |
TGAAAAAGATGCAAGCGGTC+GGG | + | chr8_1:53731241-53731260 | None:intergenic | 45.0% | |
CACAAAGCCGTAAAATCGGT+TGG | + | chr8_1:53731287-53731306 | None:intergenic | 45.0% | |
!! | CAACCGATTTTACGGCTTTG+TGG | - | chr8_1:53731285-53731304 | Msa1200780:CDS | 45.0% |
TGCCCACAAAGCCGTAAAAT+CGG | + | chr8_1:53731291-53731310 | None:intergenic | 45.0% | |
GGCGAGGCAAAAATTGAAAG+TGG | + | chr8_1:53731331-53731350 | None:intergenic | 45.0% | |
GGTGTCAATAGCTTAGGTTC+TGG | - | chr8_1:53731416-53731435 | Msa1200780:intron | 45.0% | |
CATCTCTAACTCCACTAGGA+AGG | + | chr8_1:53731646-53731665 | None:intergenic | 45.0% | |
GACATCAATAGCTTAGGTGC+TGG | - | chr8_1:53731764-53731783 | Msa1200780:CDS | 45.0% | |
AAGCAAACCACAACCTGAAC+TGG | - | chr8_1:53731870-53731889 | Msa1200780:intron | 45.0% | |
! | CAAATGGCTTGCAAGGTTAG+AGG | - | chr8_1:53732543-53732562 | Msa1200780:intron | 45.0% |
!! | ACCGGTAAGAGTGTTAGTTG+AGG | + | chr8_1:53732848-53732867 | None:intergenic | 45.0% |
!!! | TTTTAATATATATATATGTT+TGG | - | chr8_1:53729295-53729314 | Msa1200780:intron | 5.0% |
TTTCCTTAACCAGTGCCCTC+AGG | - | chr8_1:53726642-53726661 | Msa1200780:three_prime_UTR | 50.0% | |
GATGAGAGAGTGAGACACCA+CGG | + | chr8_1:53727413-53727432 | None:intergenic | 50.0% | |
GTGTCTCACTCTCTCATCTC+AGG | - | chr8_1:53727415-53727434 | Msa1200780:intron | 50.0% | |
GGGTAAAGCTATTATGGCGG+TGG | + | chr8_1:53727488-53727507 | None:intergenic | 50.0% | |
TGCAGAGAGGATTGCATAGC+AGG | - | chr8_1:53727835-53727854 | Msa1200780:intron | 50.0% | |
CCCAATGCATACTGTGCATC+AGG | + | chr8_1:53728839-53728858 | None:intergenic | 50.0% | |
ACCTTCGGGATGAGAATGGT+TGG | - | chr8_1:53729071-53729090 | Msa1200780:intron | 50.0% | |
AGTCTGCATGCAAAATGGCC+TGG | - | chr8_1:53729096-53729115 | Msa1200780:intron | 50.0% | |
GTCTGCATGCAAAATGGCCT+GGG | - | chr8_1:53729097-53729116 | Msa1200780:intron | 50.0% | |
GACCACATAATATCCCACCC+AGG | + | chr8_1:53729117-53729136 | None:intergenic | 50.0% | |
GGCGTTGTGGTGTTTCCATA+GGG | - | chr8_1:53729539-53729558 | Msa1200780:intron | 50.0% | |
CATGCCATGCGAAAACTGTC+AGG | + | chr8_1:53729788-53729807 | None:intergenic | 50.0% | |
! | CTGACAGTTTTCGCATGGCA+TGG | - | chr8_1:53729786-53729805 | Msa1200780:intron | 50.0% |
GTATGCATGGAGGCCTTGAA+AGG | - | chr8_1:53730117-53730136 | Msa1200780:intron | 50.0% | |
AGCTCCTGACCAACCACATT+TGG | + | chr8_1:53730209-53730228 | None:intergenic | 50.0% | |
GTACTTGTAGGGACATGCTG+GGG | - | chr8_1:53730612-53730631 | Msa1200780:CDS | 50.0% | |
! | AAAGGAAGTGGGGATGGGTT+TGG | + | chr8_1:53730741-53730760 | None:intergenic | 50.0% |
GCTTGAAAGGAAGTGGGGAT+GGG | + | chr8_1:53730746-53730765 | None:intergenic | 50.0% | |
AGCTTGAAAGGAAGTGGGGA+TGG | + | chr8_1:53730747-53730766 | None:intergenic | 50.0% | |
GTGCAGCTTGAAAGGAAGTG+GGG | + | chr8_1:53730751-53730770 | None:intergenic | 50.0% | |
TCAGAATCGAGATCCTACCC+AGG | - | chr8_1:53730965-53730984 | Msa1200780:intron | 50.0% | |
ATCGAGATCCTACCCAGGAT+CGG | - | chr8_1:53730970-53730989 | Msa1200780:intron | 50.0% | |
CAGGATCGTATCATGGATCG+AGG | - | chr8_1:53731003-53731022 | Msa1200780:intron | 50.0% | |
TTCTGCCTATGAGTGAGCTC+TGG | + | chr8_1:53731352-53731371 | None:intergenic | 50.0% | |
!! | TGGTGGGTTGATTGCATCGT+TGG | - | chr8_1:53732311-53732330 | Msa1200780:intron | 50.0% |
!! | GGTGGGTTGATTGCATCGTT+GGG | - | chr8_1:53732312-53732331 | Msa1200780:intron | 50.0% |
GCAAAAGCAGGCTGTGATCT+TGG | - | chr8_1:53732517-53732536 | Msa1200780:intron | 50.0% | |
! | ATGGCTTGCAAGGTTAGAGG+AGG | - | chr8_1:53732546-53732565 | Msa1200780:intron | 50.0% |
GGTTAGAGGAGGAAGAGAAG+CGG | - | chr8_1:53732557-53732576 | Msa1200780:intron | 50.0% | |
!! | TACCCTCGGGGCACTGATTA+AGG | - | chr8_1:53726566-53726585 | Msa1200780:three_prime_UTR | 55.0% |
CTCCTTAATCAGTGCCCCGA+GGG | + | chr8_1:53726571-53726590 | None:intergenic | 55.0% | |
ACTCCTTAATCAGTGCCCCG+AGG | + | chr8_1:53726572-53726591 | None:intergenic | 55.0% | |
!! | TGTCCTGAGGGCACTGGTTA+AGG | + | chr8_1:53726648-53726667 | None:intergenic | 55.0% |
TCTGTTGCCAGGGGAAAAGG+CGG | + | chr8_1:53728777-53728796 | None:intergenic | 55.0% | |
! | CTTTTCCCCTGGCAACAGAG+CGG | - | chr8_1:53728778-53728797 | Msa1200780:CDS | 55.0% |
CAACAGAGCGGCAGCATTAC+TGG | - | chr8_1:53728790-53728809 | Msa1200780:CDS | 55.0% | |
GCCAACCATTCTCATCCCGA+AGG | + | chr8_1:53729075-53729094 | None:intergenic | 55.0% | |
TGCATGCAAAATGGCCTGGG+TGG | - | chr8_1:53729100-53729119 | Msa1200780:intron | 55.0% | |
GCATGCAAAATGGCCTGGGT+GGG | - | chr8_1:53729101-53729120 | Msa1200780:intron | 55.0% | |
GGCCTGGGTGGGATATTATG+TGG | - | chr8_1:53729112-53729131 | Msa1200780:intron | 55.0% | |
CGGCGTTGTGGTGTTTCCAT+AGG | - | chr8_1:53729538-53729557 | Msa1200780:intron | 55.0% | |
! | CGCACCTGACAGTTTTCGCA+TGG | - | chr8_1:53729781-53729800 | Msa1200780:intron | 55.0% |
! | AGGGCCAAATGTGGTTGGTC+AGG | - | chr8_1:53730202-53730221 | Msa1200780:intron | 55.0% |
GATTCGGCGAAAGGGTCATC+AGG | + | chr8_1:53730293-53730312 | None:intergenic | 55.0% | |
GCTGGGGCAGCTATTGCATA+TGG | - | chr8_1:53730628-53730647 | Msa1200780:intron | 55.0% | |
! | TGGGGATGGGTTTGGATGCA+TGG | + | chr8_1:53730733-53730752 | None:intergenic | 55.0% |
TCGAGATCCTACCCAGGATC+GGG | - | chr8_1:53730971-53730990 | Msa1200780:intron | 55.0% | |
ATCCTACCCAGGATCGGGAA+GGG | - | chr8_1:53730976-53730995 | Msa1200780:intron | 55.0% | |
! | AATCAGTGCCCCGAGGGTAC+TGG | + | chr8_1:53726565-53726584 | None:intergenic | 60.0% |
AACCAGTGCCCTCAGGACAC+TGG | - | chr8_1:53726649-53726668 | Msa1200780:three_prime_UTR | 60.0% | |
! | AACCAGTGTCCTGAGGGCAC+TGG | + | chr8_1:53726654-53726673 | None:intergenic | 60.0% |
GAGAGAGTGAGACACCACGG+CGG | + | chr8_1:53727410-53727429 | None:intergenic | 60.0% | |
GGCGGTGGCAACCAGAGAAA+TGG | + | chr8_1:53727473-53727492 | None:intergenic | 60.0% | |
CGCTCTGTTGCCAGGGGAAA+AGG | + | chr8_1:53728780-53728799 | None:intergenic | 60.0% | |
ATGCTGCCGCTCTGTTGCCA+GGG | + | chr8_1:53728787-53728806 | None:intergenic | 60.0% | |
AATGCTGCCGCTCTGTTGCC+AGG | + | chr8_1:53728788-53728807 | None:intergenic | 60.0% | |
CACACTGGGAGGGCCAAATG+TGG | - | chr8_1:53730193-53730212 | Msa1200780:intron | 60.0% | |
CTGGGAGGGCCAAATGTGGT+TGG | - | chr8_1:53730197-53730216 | Msa1200780:intron | 60.0% | |
GATCCTACCCAGGATCGGGA+AGG | - | chr8_1:53730975-53730994 | Msa1200780:intron | 60.0% | |
TCCTACCCAGGATCGGGAAG+GGG | - | chr8_1:53730977-53730996 | Msa1200780:intron | 60.0% | |
! | GGGGGCACAGGATCGTATCA+TGG | - | chr8_1:53730996-53731015 | Msa1200780:intron | 60.0% |
! | CCTATGAGTGAGCTCTGGCG+AGG | + | chr8_1:53731347-53731366 | None:intergenic | 60.0% |
CCTCGCCAGAGCTCACTCAT+AGG | - | chr8_1:53731344-53731363 | Msa1200780:CDS | 60.0% | |
GGTGCAGCTGCTCAAATGCG+AGG | - | chr8_1:53732430-53732449 | Msa1200780:intron | 60.0% | |
AGAGTGAGACACCACGGCGG+TGG | + | chr8_1:53727407-53727426 | None:intergenic | 65.0% | |
TGCTGCCGCTCTGTTGCCAG+GGG | + | chr8_1:53728786-53728805 | None:intergenic | 65.0% | |
CCTACCCAGGATCGGGAAGG+GGG | - | chr8_1:53730978-53730997 | Msa1200780:intron | 65.0% | |
TGTGCCCCCTTCCCGATCCT+GGG | + | chr8_1:53730985-53731004 | None:intergenic | 65.0% | |
GTGAGACACCACGGCGGTGG+CGG | + | chr8_1:53727404-53727423 | None:intergenic | 70.0% | |
CCCCCTTCCCGATCCTGGGT+AGG | + | chr8_1:53730981-53731000 | None:intergenic | 70.0% | |
CTGTGCCCCCTTCCCGATCC+TGG | + | chr8_1:53730986-53731005 | None:intergenic | 70.0% | |
! | CAGGATCGGGAAGGGGGCAC+AGG | - | chr8_1:53730984-53731003 | Msa1200780:intron | 70.0% |
GCGGTCGGGAACACGCAACC+TGG | + | chr8_1:53731227-53731246 | None:intergenic | 70.0% | |
! | AGACACCACGGCGGTGGCGG+CGG | + | chr8_1:53727401-53727420 | None:intergenic | 75.0% |
! | GATCACCGCCGCCACCGCCG+TGG | - | chr8_1:53727393-53727412 | Msa1200780:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 53726486 | 53732955 | 53726486 | ID=Msa1200780;Name=Msa1200780 |
chr8_1 | mRNA | 53726486 | 53732955 | 53726486 | ID=Msa1200780-mRNA-1;Parent=Msa1200780;Name=Msa1200780-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.8|0.72|0.90|0.8|0.72|11|324|275 |
chr8_1 | exon | 53726486 | 53726720 | 53726486 | ID=Msa1200780-mRNA-1:exon:17249;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53726752 | 53727055 | 53726752 | ID=Msa1200780-mRNA-1:exon:17248;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53728774 | 53728819 | 53728774 | ID=Msa1200780-mRNA-1:exon:17247;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53729869 | 53729976 | 53729869 | ID=Msa1200780-mRNA-1:exon:17246;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53730058 | 53730117 | 53730058 | ID=Msa1200780-mRNA-1:exon:17245;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53730564 | 53730645 | 53730564 | ID=Msa1200780-mRNA-1:exon:17244;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53731259 | 53731374 | 53731259 | ID=Msa1200780-mRNA-1:exon:17243;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53731473 | 53731601 | 53731473 | ID=Msa1200780-mRNA-1:exon:17242;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53731735 | 53731794 | 53731735 | ID=Msa1200780-mRNA-1:exon:17241;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53731849 | 53731855 | 53731849 | ID=Msa1200780-mRNA-1:exon:17240;Parent=Msa1200780-mRNA-1 |
chr8_1 | exon | 53732951 | 53732955 | 53732951 | ID=Msa1200780-mRNA-1:exon:17239;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53732951 | 53732955 | 53732951 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53731849 | 53731855 | 53731849 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53731735 | 53731794 | 53731735 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53731473 | 53731601 | 53731473 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53731259 | 53731374 | 53731259 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53730564 | 53730645 | 53730564 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53730058 | 53730117 | 53730058 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53729869 | 53729976 | 53729869 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53728774 | 53728819 | 53728774 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | CDS | 53726841 | 53727055 | 53726841 | ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1 |
chr8_1 | three_prime_UTR | 53726752 | 53726840 | 53726752 | ID=Msa1200780-mRNA-1:three_prime_utr;Parent=Msa1200780-mRNA-1 |
chr8_1 | three_prime_UTR | 53726486 | 53726720 | 53726486 | ID=Msa1200780-mRNA-1:three_prime_utr;Parent=Msa1200780-mRNA-1 |
Gene Sequence |
Protein sequence |