AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1200780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200780 MtrunA17_Chr4g0021571 88.768 276 17 2 12 275 1 274 1.92e-179 494
Msa1200780 MtrunA17_Chr8g0370401 92.029 276 10 1 12 275 1 276 2.36e-178 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200780 AT2G25570.3 73.896 249 65 0 25 273 32 280 1.02e-137 390
Msa1200780 AT2G25570.1 73.896 249 65 0 25 273 32 280 1.02e-137 390
Msa1200780 AT2G25570.2 70.430 186 55 0 88 273 11 196 4.78e-95 278

Find 68 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAACATTTGGAGTGATTT+TGG 0.118238 8_1:+53731729 None:intergenic
CTGAACTTTATTAATGATTC+TGG 0.153422 8_1:+53727022 None:intergenic
TCCAGAAGCTCTTTACCTTT+TGG 0.189427 8_1:-53729949 Msa1200780:CDS
TATGGATCTCTTCTTCTTAA+AGG 0.196109 8_1:-53728773 Msa1200780:intron
TTTGATTGGTATATCTAAAA+TGG 0.213475 8_1:+53726677 None:intergenic
CCATGTTCCTGGAGCAAATA+AGG 0.261543 8_1:-53731263 Msa1200780:CDS
CCCAAAAGGTAAAGAGCTTC+TGG 0.279286 8_1:+53729948 None:intergenic
CAACAGAGCGGCAGCATTAC+TGG 0.291780 8_1:-53730629 Msa1200780:intron
TCTAAAATGGCTTGTGCAAC+TGG 0.306154 8_1:+53726690 None:intergenic
TGTAGTAATCTTAATAATCT+TGG 0.334677 8_1:+53726831 None:intergenic
CGGCGTTGTGGTGTTTCCAT+AGG 0.354597 8_1:-53729881 Msa1200780:CDS
ACTGGTAGAAGCAGCAGATA+TGG 0.373269 8_1:-53730611 Msa1200780:CDS
ATTCAAAGCATTCCATCCTT+TGG 0.377234 8_1:+53731536 None:intergenic
CAAATGGCTTGCAAGGTTAG+AGG 0.378199 8_1:-53726876 Msa1200780:CDS
GCAAAAGCAGGCTGTGATCT+TGG 0.382710 8_1:-53726902 Msa1200780:CDS
ATGTACTTGTAGGGACATGC+TGG 0.386246 8_1:-53728809 Msa1200780:intron
AGTATACATTATGTGTAATA+TGG 0.388959 8_1:-53726751 Msa1200780:intron
CATATGAAATACCATGTTCC+TGG 0.401927 8_1:-53731274 Msa1200780:CDS
ACCTCAACTAACACTCTTAC+CGG 0.402028 8_1:-53726575 Msa1200780:three_prime_UTR
TGCAGAGAGGATTGCATAGC+AGG 0.416440 8_1:-53731584 Msa1200780:intron
CCCAATGCATACTGTGCATC+AGG 0.422036 8_1:+53730583 None:intergenic
ATTATTGTGAGCTCAATGAT+AGG 0.425093 8_1:-53731494 Msa1200780:CDS
TTTGGAGAAAGCTGTGGATC+AGG 0.425741 8_1:-53730057 Msa1200780:intron
TTTGCAAGAAGATGTTGCTT+AGG 0.430555 8_1:-53731762 Msa1200780:CDS
ATGGTATTTCATATGCAATC+TGG 0.435552 8_1:+53731282 None:intergenic
CCAATACTCATGCTAGGTAT+TGG 0.447830 8_1:-53731309 Msa1200780:CDS
GTAGTAATCTTAATAATCTT+GGG 0.452389 8_1:+53726832 None:intergenic
TTGCAAGAAGATGTTGCTTA+GGG 0.452552 8_1:-53731761 Msa1200780:CDS
GCTGGGGCAGCTATTGCATA+TGG 0.457691 8_1:-53728791 Msa1200780:CDS
TTGGGTGCTGTATATTTGAC+TGG 0.459180 8_1:-53729930 Msa1200780:CDS
GGCGTTGTGGTGTTTCCATA+GGG 0.465945 8_1:-53729880 Msa1200780:CDS
TACACAGCCTTATTTGCTCC+AGG 0.472685 8_1:+53731256 None:intergenic
ATAAAGAGATACTGTTATGA+TGG 0.472949 8_1:+53726478 None:intergenic
CCAATACCTAGCATGAGTAT+TGG 0.495027 8_1:+53731309 None:intergenic
TTACCTTCTCTGATGCCCTA+TGG 0.498613 8_1:+53729865 None:intergenic
TTGGATTCAAATGGCTTGCA+AGG 0.500516 8_1:-53726883 Msa1200780:CDS
TGTTAAGAAAGATATTGCTT+CGG 0.501886 8_1:-53729901 Msa1200780:CDS
CTGGTAGAAGCAGCAGATAT+GGG 0.516752 8_1:-53730610 Msa1200780:CDS
CCTTATTTGCTCCAGGAACA+TGG 0.523897 8_1:+53731263 None:intergenic
GCTGTGATCTTGGATTCAAA+TGG 0.526301 8_1:-53726892 Msa1200780:CDS
ACCAACAAATAAAATTATGC+CGG 0.537397 8_1:+53726793 None:intergenic
TCAAATATACAGCACCCAAA+AGG 0.537596 8_1:+53729934 None:intergenic
CCTGATGCACAGTATGCATT+GGG 0.538507 8_1:-53730583 Msa1200780:CDS
GGGTTGTCATTTAAGAGTAG+AGG 0.540282 8_1:-53730563 Msa1200780:intron
TTTCAGATAGCTGCAAAAGC+AGG 0.541336 8_1:-53726914 Msa1200780:CDS
TCCTTTGGCAATAAACTCCA+TGG 0.542087 8_1:+53731551 None:intergenic
TGCAATTGATCCAGTAGAGA+TGG 0.542124 8_1:-53726948 Msa1200780:CDS
TGGAGTTTATTGCCAAAGGA+TGG 0.542248 8_1:-53731548 Msa1200780:CDS
AACAAATAAAATTATGCCGG+TGG 0.543071 8_1:+53726796 None:intergenic
TTATTATTTGGAGAAAGCTG+TGG 0.545230 8_1:-53730063 Msa1200780:CDS
AAGATATTGCTTCGGCGTTG+TGG 0.548648 8_1:-53729893 Msa1200780:CDS
GCCATGGAGTTTATTGCCAA+AGG 0.559060 8_1:-53731552 Msa1200780:CDS
TGTACTTGTAGGGACATGCT+GGG 0.572949 8_1:-53728808 Msa1200780:intron
TCCTGATGCACAGTATGCAT+TGG 0.573129 8_1:-53730584 Msa1200780:CDS
GAGCGATTACGTTAAGAAGA+GGG 0.586094 8_1:+53731463 None:intergenic
TTTCCATAGGGCATCAGAGA+AGG 0.588045 8_1:-53729868 Msa1200780:intron
ATAAAGTTCAGTTTGAAGAG+AGG 0.588848 8_1:-53727010 Msa1200780:CDS
ACAACTCCAATACTCATGCT+AGG 0.590913 8_1:-53731315 Msa1200780:CDS
ACAAATAAAATTATGCCGGT+GGG 0.597890 8_1:+53726797 None:intergenic
CGAGCGATTACGTTAAGAAG+AGG 0.599634 8_1:+53731462 None:intergenic
TACATATCATCTATTCCCAC+CGG 0.601310 8_1:-53726812 Msa1200780:three_prime_UTR
TAGCAGGAACAAGAAAGCCA+TGG 0.626061 8_1:-53731568 Msa1200780:CDS
GGTTCATAAATAGACAGCAA+AGG 0.660807 8_1:-53731365 Msa1200780:intron
ATGGCTTGCAAGGTTAGAGG+AGG 0.666157 8_1:-53726873 Msa1200780:CDS
ACCGGTAAGAGTGTTAGTTG+AGG 0.671928 8_1:+53726574 None:intergenic
GGTGCAGCTGCTCAAATGCG+AGG 0.673473 8_1:-53726989 Msa1200780:CDS
GGTTAGAGGAGGAAGAGAAG+CGG 0.689049 8_1:-53726862 Msa1200780:CDS
GTACTTGTAGGGACATGCTG+GGG 0.726548 8_1:-53728807 Msa1200780:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTTACAATTATTTGT+AGG - chr8_1:53726529-53726548 Msa1200780:three_prime_UTR 10.0%
!! TAAATTTACAATTATTTGTA+GGG - chr8_1:53726530-53726549 Msa1200780:three_prime_UTR 10.0%
!!! ATTATTTTTATTATTTCTAG+TGG - chr8_1:53728300-53728319 Msa1200780:intron 10.0%
!! TATAATTGCAAAAATATAAT+CGG + chr8_1:53729184-53729203 None:intergenic 10.0%
!!! AAACATTTTTTTAGTATTTA+TGG - chr8_1:53729633-53729652 Msa1200780:intron 10.0%
!!! AACTTTTTTTTTTACTTTGA+GGG + chr8_1:53726771-53726790 None:intergenic 15.0%
!!! AAACTTTTTTTTTTACTTTG+AGG + chr8_1:53726772-53726791 None:intergenic 15.0%
!! TTCTTCAAATTAAATGTAAA+AGG - chr8_1:53726857-53726876 Msa1200780:CDS 15.0%
!!! GATGAATTTAATTTTACTTA+AGG - chr8_1:53727176-53727195 Msa1200780:intron 15.0%
!!! TAAGGTAATTTTGTTATTTT+AGG - chr8_1:53727194-53727213 Msa1200780:intron 15.0%
!!! AAGGTAATTTTGTTATTTTA+GGG - chr8_1:53727195-53727214 Msa1200780:intron 15.0%
!!! TAAGTTTTTTGTTTTTGTAA+AGG + chr8_1:53727282-53727301 None:intergenic 15.0%
!! AAATGGAAAATAATGAAAAT+GGG + chr8_1:53727456-53727475 None:intergenic 15.0%
!! TCTAAAAATAAAGAAGTAAA+TGG + chr8_1:53727989-53728008 None:intergenic 15.0%
!!! TATATATATGCATTTTTTGA+TGG + chr8_1:53728243-53728262 None:intergenic 15.0%
!! TAAATTTATAGATATGTTCT+TGG + chr8_1:53728271-53728290 None:intergenic 15.0%
!!! CATGTTTTGAAATTTAAATT+TGG - chr8_1:53728426-53728445 Msa1200780:intron 15.0%
!! ATAATTGCAAAAATATAATC+GGG + chr8_1:53729183-53729202 None:intergenic 15.0%
!!! ATAAGTTTTGAAAGAAAAAT+TGG + chr8_1:53729944-53729963 None:intergenic 15.0%
!!! ACATTTAATTTTTTTGCTAT+TGG - chr8_1:53730142-53730161 Msa1200780:intron 15.0%
!! AATAATTTACCAAAAATGTT+TGG + chr8_1:53731564-53731583 None:intergenic 15.0%
!!! TAAACTATTTGAAATTACTT+TGG + chr8_1:53731807-53731826 None:intergenic 15.0%
!!! AAATTACAGTTTTATTTGAT+TGG + chr8_1:53732759-53732778 None:intergenic 15.0%
!!! TATTATCTAAAGTACACTTT+TGG + chr8_1:53726512-53726531 None:intergenic 20.0%
!!! ACTTTTTTTTTTACTTTGAG+GGG + chr8_1:53726770-53726789 None:intergenic 20.0%
!! GCATCAATTATTTATTTATG+AGG + chr8_1:53726821-53726840 None:intergenic 20.0%
!!! TATGTAAACTTGTTTTACTT+AGG + chr8_1:53726991-53727010 None:intergenic 20.0%
!! TTAAGTAGTCAAAAAAAAGT+AGG + chr8_1:53727116-53727135 None:intergenic 20.0%
!! TACAAAAACAAAAAACTTAC+TGG - chr8_1:53727283-53727302 Msa1200780:intron 20.0%
!! GAAATGGAAAATAATGAAAA+TGG + chr8_1:53727457-53727476 None:intergenic 20.0%
!! GAAAATTAAGGAAATGAAAA+GGG + chr8_1:53727553-53727572 None:intergenic 20.0%
!!! AAAAAACTAGTAGTTACTTT+TGG - chr8_1:53728497-53728516 Msa1200780:intron 20.0%
!!! TTTGGAGTTTCTTTATAATA+TGG - chr8_1:53728515-53728534 Msa1200780:intron 20.0%
!! TTATTATCCAAATCATTACA+CGG - chr8_1:53728555-53728574 Msa1200780:intron 20.0%
!! AGTAAACATTAGACTTTAAA+TGG - chr8_1:53728662-53728681 Msa1200780:intron 20.0%
!! AAAACTAATATGAATGTCAT+TGG + chr8_1:53728739-53728758 None:intergenic 20.0%
!! TTGGCTATAATATACTTAAA+CGG + chr8_1:53728915-53728934 None:intergenic 20.0%
!! AATCTGCAAATAGTAATTTA+AGG + chr8_1:53728985-53729004 None:intergenic 20.0%
!!! GATTGTATTTTAACTTTTTG+TGG - chr8_1:53729022-53729041 Msa1200780:intron 20.0%
!!! GCAATTATATTTGATTTCTA+AGG - chr8_1:53729195-53729214 Msa1200780:intron 20.0%
!! GTATAATACTTGAATACATT+AGG - chr8_1:53729227-53729246 Msa1200780:intron 20.0%
!! AAAAAATCTAACAAAAACTC+AGG + chr8_1:53729265-53729284 None:intergenic 20.0%
!!! TCAACAAGCTTTTTATTATT+TGG - chr8_1:53729344-53729363 Msa1200780:intron 20.0%
!! AACATATAACATACACAATA+AGG + chr8_1:53729441-53729460 None:intergenic 20.0%
!!! TTTTCTTTCAAAACTTATAC+TGG - chr8_1:53729946-53729965 Msa1200780:CDS 20.0%
!!! GAATTGTATTCTAAAATTAC+TGG - chr8_1:53730049-53730068 Msa1200780:intron 20.0%
!! TAGTATGAGAATTTCAATAA+AGG - chr8_1:53730090-53730109 Msa1200780:CDS 20.0%
!! AAATTAAATGTTACCTTTCA+AGG + chr8_1:53730133-53730152 None:intergenic 20.0%
!!! GTGTTTTTATTTATGTGTTT+TGG + chr8_1:53730176-53730195 None:intergenic 20.0%
!! TTCTTCATTTAATTAGGATT+CGG - chr8_1:53730679-53730698 Msa1200780:intron 20.0%
!!! GTTTACTTGTTATGAAAATA+TGG + chr8_1:53730811-53730830 None:intergenic 20.0%
!! CATAAATATTCAGAAACTAT+AGG - chr8_1:53730858-53730877 Msa1200780:intron 20.0%
!!! TTCTCACTTTTAACTATATA+AGG + chr8_1:53731098-53731117 None:intergenic 20.0%
!!! ATTTTGTATTCTCTTTTACA+GGG + chr8_1:53731133-53731152 None:intergenic 20.0%
!!! ATATTTATTAGCTTGCATTT+CGG - chr8_1:53732029-53732048 Msa1200780:intron 20.0%
!!! AAGTTATGGTTTTTGATTAA+AGG + chr8_1:53732135-53732154 None:intergenic 20.0%
!!! AACAAAGATTGTTTGTTTTA+AGG + chr8_1:53732252-53732271 None:intergenic 20.0%
!! TTAAAACAAACAATCTTTGT+TGG - chr8_1:53732251-53732270 Msa1200780:intron 20.0%
!! TTAATATCAGACTTTAAACA+GGG + chr8_1:53732341-53732360 None:intergenic 20.0%
!! ATTAATATCAGACTTTAAAC+AGG + chr8_1:53732342-53732361 None:intergenic 20.0%
!! GTCTGATATTAATAAAAGAA+AGG - chr8_1:53732349-53732368 Msa1200780:intron 20.0%
!! GTAGTAATCTTAATAATCTT+GGG + chr8_1:53732590-53732609 None:intergenic 20.0%
!! TGTAGTAATCTTAATAATCT+TGG + chr8_1:53732591-53732610 None:intergenic 20.0%
!! AGTATACATTATGTGTAATA+TGG - chr8_1:53732668-53732687 Msa1200780:intron 20.0%
!! TTTGATTGGTATATCTAAAA+TGG + chr8_1:53732745-53732764 None:intergenic 20.0%
!!! ACTATAAGATTTTTAACTAC+CGG + chr8_1:53732866-53732885 None:intergenic 20.0%
!! AGTTAAAAATCTTATAGTTG+AGG - chr8_1:53732868-53732887 Msa1200780:intron 20.0%
!! GTTAAAAATCTTATAGTTGA+GGG - chr8_1:53732869-53732888 Msa1200780:intron 20.0%
!! CGACTTAAAATTTTCACTTT+TGG - chr8_1:53726619-53726638 Msa1200780:three_prime_UTR 25.0%
!! TTTGGATGTATATTTCTATG+CGG - chr8_1:53726708-53726727 Msa1200780:intron 25.0%
!!! CTTTTTTTTTTACTTTGAGG+GGG + chr8_1:53726769-53726788 None:intergenic 25.0%
!!! ATAAATTAGTATCGATTGAG+AGG - chr8_1:53726892-53726911 Msa1200780:CDS 25.0%
! ATCATTAAACAAGTTTGAAG+AGG - chr8_1:53727018-53727037 Msa1200780:CDS 25.0%
! AGGTCGTTTAAATTCAATTT+AGG + chr8_1:53727096-53727115 None:intergenic 25.0%
!! AAGAACTATGCAAAAAGTTT+TGG - chr8_1:53727154-53727173 Msa1200780:intron 25.0%
! GAAAATAATGAAAATGGGAT+TGG + chr8_1:53727451-53727470 None:intergenic 25.0%
!! TTCATTATTTTCCATTTCTC+TGG - chr8_1:53727459-53727478 Msa1200780:intron 25.0%
! CGAAAATTAAGGAAATGAAA+AGG + chr8_1:53727554-53727573 None:intergenic 25.0%
! TAAAAAGCTCACGAAAATTA+AGG + chr8_1:53727565-53727584 None:intergenic 25.0%
!! TTAATTTTCGTGAGCTTTTT+AGG - chr8_1:53727564-53727583 Msa1200780:intron 25.0%
! AATTGGAAAAGAGAAACATT+TGG + chr8_1:53727704-53727723 None:intergenic 25.0%
! CATGAAGAAACAAAACATAA+CGG + chr8_1:53728207-53728226 None:intergenic 25.0%
!!! TGCATTTTTTGATGGAAAAT+AGG + chr8_1:53728235-53728254 None:intergenic 25.0%
!!! TATTATTTCTAGTGGAAAGA+CGG - chr8_1:53728308-53728327 Msa1200780:intron 25.0%
! ACATTAGACTTTAAATGGAA+AGG - chr8_1:53728667-53728686 Msa1200780:intron 25.0%
!!! TGACATTCATATTAGTTTTG+TGG - chr8_1:53728740-53728759 Msa1200780:intron 25.0%
!! AACGGATTTCTAACAATATA+AGG + chr8_1:53728897-53728916 None:intergenic 25.0%
! GTTATAACTTATATGACCTT+CGG - chr8_1:53729056-53729075 Msa1200780:intron 25.0%
! TTATAACTTATATGACCTTC+GGG - chr8_1:53729057-53729076 Msa1200780:intron 25.0%
!!! TTTGATTTCTAAGGTTTACT+TGG - chr8_1:53729204-53729223 Msa1200780:intron 25.0%
!!! TTGATTTCTAAGGTTTACTT+GGG - chr8_1:53729205-53729224 Msa1200780:intron 25.0%
! TGTTAAGAAAGATATTGCTT+CGG - chr8_1:53729518-53729537 Msa1200780:intron 25.0%
!! CTTTGAAAAACTTTAACTAC+TGG + chr8_1:53729908-53729927 None:intergenic 25.0%
!! TACTATGACTATTTCTTGTT+GGG + chr8_1:53730075-53730094 None:intergenic 25.0%
!! ATACTATGACTATTTCTTGT+TGG + chr8_1:53730076-53730095 None:intergenic 25.0%
! ACACATAAATAAAAACACAC+TGG - chr8_1:53730178-53730197 Msa1200780:intron 25.0%
! CACATAAATAAAAACACACT+GGG - chr8_1:53730179-53730198 Msa1200780:intron 25.0%
! TTCCTCCTTTAATTATGATT+CGG + chr8_1:53730309-53730328 None:intergenic 25.0%
!! ACATTTTCATGTGTAGATAA+AGG + chr8_1:53730446-53730465 None:intergenic 25.0%
! TAGATACATTCGATTAAACT+CGG + chr8_1:53730503-53730522 None:intergenic 25.0%
! AGTAAACATTCAGAAACTAT+AGG - chr8_1:53730824-53730843 Msa1200780:intron 25.0%
!! TTCTAACTTGTGAAATTAGT+AGG + chr8_1:53731030-53731049 None:intergenic 25.0%
!! GAAGTTTACACGTTTTTAAT+AGG - chr8_1:53731047-53731066 Msa1200780:intron 25.0%
! GTTAAAAGTGAGAATACAAA+AGG - chr8_1:53731104-53731123 Msa1200780:intron 25.0%
!! CATTTTGTATTCTCTTTTAC+AGG + chr8_1:53731134-53731153 None:intergenic 25.0%
!! TTATCAGAAAACACGTTTTT+AGG - chr8_1:53731166-53731185 Msa1200780:intron 25.0%
!! TATCAGAAAACACGTTTTTA+GGG - chr8_1:53731167-53731186 Msa1200780:intron 25.0%
! TTATTGAATACTTTGCACAA+TGG - chr8_1:53731579-53731598 Msa1200780:CDS 25.0%
! TATTGAATACTTTGCACAAT+GGG - chr8_1:53731580-53731599 Msa1200780:CDS 25.0%
!!! ACTTTCAGTTTTAGAAAGTT+TGG + chr8_1:53731674-53731693 None:intergenic 25.0%
!!! AAATAGAAGTTCTAGCATTT+TGG - chr8_1:53731967-53731986 Msa1200780:intron 25.0%
! TTTCACATTCTTCATAACAA+AGG - chr8_1:53732005-53732024 Msa1200780:intron 25.0%
! AAGGATGAGAAAAATAACAA+GGG + chr8_1:53732116-53732135 None:intergenic 25.0%
! AAAGGATGAGAAAAATAACA+AGG + chr8_1:53732117-53732136 None:intergenic 25.0%
! ATGGTTTAGTTAGAAGTTAA+AGG + chr8_1:53732183-53732202 None:intergenic 25.0%
! CTGAACTTTATTAATGATTC+TGG + chr8_1:53732400-53732419 None:intergenic 25.0%
! ACCAACAAATAAAATTATGC+CGG + chr8_1:53732629-53732648 None:intergenic 25.0%
! TTTATACAGAAAAACAGACA+AGG + chr8_1:53732707-53732726 None:intergenic 25.0%
ATACATCCAAACTTTACCAT+GGG + chr8_1:53726699-53726718 None:intergenic 30.0%
TATACATCCAAACTTTACCA+TGG + chr8_1:53726700-53726719 None:intergenic 30.0%
AGGTTAAAGAGCAAATTTAG+AGG + chr8_1:53727334-53727353 None:intergenic 30.0%
ATAATGAAAATGGGATTGGA+TGG + chr8_1:53727447-53727466 None:intergenic 30.0%
ATTAAGGAAATGAAAAGGGT+CGG + chr8_1:53727549-53727568 None:intergenic 30.0%
CTGTAACATAGAAACAAGAA+AGG + chr8_1:53727627-53727646 None:intergenic 30.0%
!! CTTTCTTGTTTCTATGTTAC+AGG - chr8_1:53727625-53727644 Msa1200780:intron 30.0%
!! GAAACATTTGGAGTGATTTT+GGG + chr8_1:53727692-53727711 None:intergenic 30.0%
!! AGAAACATTTGGAGTGATTT+TGG + chr8_1:53727693-53727712 None:intergenic 30.0%
! TCTTTTCCAATTCAATCAAC+AGG - chr8_1:53727712-53727731 Msa1200780:intron 30.0%
ATTATTGTGAGCTCAATGAT+AGG - chr8_1:53727925-53727944 Msa1200780:intron 30.0%
TATGAACCACAAATAAGCAA+TGG + chr8_1:53728042-53728061 None:intergenic 30.0%
ATGGTATTTCATATGCAATC+TGG + chr8_1:53728140-53728159 None:intergenic 30.0%
TGCTATGAAATTGTTTGTGT+TGG - chr8_1:53728589-53728608 Msa1200780:intron 30.0%
! ATTGACTCAATCTTCATGTT+TGG + chr8_1:53728934-53728953 None:intergenic 30.0%
AATAGTAATTTAAGGAGGCA+TGG + chr8_1:53728977-53728996 None:intergenic 30.0%
CTGCAAATAGTAATTTAAGG+AGG + chr8_1:53728982-53729001 None:intergenic 30.0%
TCTTAATGCTGAATTACTAG+TGG - chr8_1:53729135-53729154 Msa1200780:intron 30.0%
!! AAAAAGCTTGTTGATCTGAA+TGG + chr8_1:53729338-53729357 None:intergenic 30.0%
TTATTATTTGGAGAAAGCTG+TGG - chr8_1:53729356-53729375 Msa1200780:intron 30.0%
AAAATGTTTAATACAGTGCG+AGG + chr8_1:53729622-53729641 None:intergenic 30.0%
! TACTACTAAGCTTTTCATGA+AGG + chr8_1:53729830-53729849 None:intergenic 30.0%
AGTAATCAATGAAACTCTAG+AGG + chr8_1:53729872-53729891 None:intergenic 30.0%
ATAAATAAAAACACACTGGG+AGG - chr8_1:53730182-53730201 Msa1200780:intron 30.0%
TAAATAAAAACACACTGGGA+GGG - chr8_1:53730183-53730202 Msa1200780:intron 30.0%
! TTAATTATGATTCGGCGAAA+GGG + chr8_1:53730301-53730320 None:intergenic 30.0%
! TTTAATTATGATTCGGCGAA+AGG + chr8_1:53730302-53730321 None:intergenic 30.0%
TTTCGCCGAATCATAATTAA+AGG - chr8_1:53730301-53730320 Msa1200780:intron 30.0%
ATGTGTAGATAAAGGAACAT+CGG + chr8_1:53730438-53730457 None:intergenic 30.0%
AGATACATTCGATTAAACTC+GGG + chr8_1:53730502-53730521 None:intergenic 30.0%
!!! CTTGTTCAGAGATTTTGATT+TGG - chr8_1:53730570-53730589 Msa1200780:CDS 30.0%
ACTTTATTCCATGTACTTGT+AGG - chr8_1:53730600-53730619 Msa1200780:CDS 30.0%
CTTTATTCCATGTACTTGTA+GGG - chr8_1:53730601-53730620 Msa1200780:CDS 30.0%
TATGGATCTCTTCTTCTTAA+AGG - chr8_1:53730646-53730665 Msa1200780:intron 30.0%
CTTGCGTTCTTCATTTAATT+AGG - chr8_1:53730673-53730692 Msa1200780:intron 30.0%
! CTTTTAAATGGTGTACTAGT+AGG + chr8_1:53730903-53730922 None:intergenic 30.0%
CTACTAGTACACCATTTAAA+AGG - chr8_1:53730901-53730920 Msa1200780:intron 30.0%
! GTAGAAAACGACCTTTTAAA+TGG + chr8_1:53730915-53730934 None:intergenic 30.0%
! CGTGTTTTCTGATAAAAATG+AGG + chr8_1:53731161-53731180 None:intergenic 30.0%
TCTACAAAAAATGCAGAGTT+GGG + chr8_1:53731203-53731222 None:intergenic 30.0%
TTCTACAAAAAATGCAGAGT+TGG + chr8_1:53731204-53731223 None:intergenic 30.0%
TTCAATGAAAAAGATGCAAG+CGG + chr8_1:53731246-53731265 None:intergenic 30.0%
GCAAAAATTGAAAGTGGTTT+GGG + chr8_1:53731325-53731344 None:intergenic 30.0%
TCACCTTAAGAACATGTAAT+AGG - chr8_1:53731395-53731414 Msa1200780:intron 30.0%
ACACCTATTACATGTTCTTA+AGG + chr8_1:53731401-53731420 None:intergenic 30.0%
!! TTACCAAAAATGTTTGGTGT+CGG + chr8_1:53731558-53731577 None:intergenic 30.0%
! TGAAAGTCATGATGATGAAT+AGG - chr8_1:53731687-53731706 Msa1200780:intron 30.0%
TGTCTATTACATGTTCTTCA+GGG + chr8_1:53731748-53731767 None:intergenic 30.0%
ATGTCTATTACATGTTCTTC+AGG + chr8_1:53731749-53731768 None:intergenic 30.0%
GTAATAGACATCAATAGCTT+AGG - chr8_1:53731758-53731777 Msa1200780:CDS 30.0%
! CAAGATTGTTACATTAGTCT+AGG + chr8_1:53731942-53731961 None:intergenic 30.0%
ACTTCTAACTAAACCATGTT+TGG - chr8_1:53732186-53732205 Msa1200780:intron 30.0%
CTTCTAACTAAACCATGTTT+GGG - chr8_1:53732187-53732206 Msa1200780:intron 30.0%
CAAGACACATTAATACCAAT+AGG - chr8_1:53732226-53732245 Msa1200780:intron 30.0%
!!! TTGTTTGTTTTAAGGCCTAT+TGG + chr8_1:53732244-53732263 None:intergenic 30.0%
! CACTGTACTTTTATGTTTTC+TGG - chr8_1:53732291-53732310 Msa1200780:intron 30.0%
! TGTACTTTTATGTTTTCTGG+TGG - chr8_1:53732294-53732313 Msa1200780:intron 30.0%
!! GTACTTTTATGTTTTCTGGT+GGG - chr8_1:53732295-53732314 Msa1200780:intron 30.0%
ATAAAGTTCAGTTTGAAGAG+AGG - chr8_1:53732409-53732428 Msa1200780:intron 30.0%
ACAAATAAAATTATGCCGGT+GGG + chr8_1:53732625-53732644 None:intergenic 30.0%
AACAAATAAAATTATGCCGG+TGG + chr8_1:53732626-53732645 None:intergenic 30.0%
!! ACCGGCATAATTTTATTTGT+TGG - chr8_1:53732625-53732644 Msa1200780:intron 30.0%
TGTAATATGGTGACTGATAA+GGG - chr8_1:53732681-53732700 Msa1200780:intron 30.0%
ACCATGGGCAATACAAATAA+GGG + chr8_1:53726684-53726703 None:intergenic 35.0%
TACCATGGGCAATACAAATA+AGG + chr8_1:53726685-53726704 None:intergenic 35.0%
GGATGCATTCATATGAGATT+GGG - chr8_1:53726735-53726754 Msa1200780:intron 35.0%
GATGCATTCATATGAGATTG+GGG - chr8_1:53726736-53726755 Msa1200780:intron 35.0%
ATGCATTCATATGAGATTGG+GGG - chr8_1:53726737-53726756 Msa1200780:intron 35.0%
GTGTAGCATGAACTATAAAC+AGG - chr8_1:53727217-53727236 Msa1200780:intron 35.0%
!!! GGTATTTTGGTATTTTCGAG+AGG + chr8_1:53727354-53727373 None:intergenic 35.0%
TGATCAGTTAACCAGTTGAT+CGG + chr8_1:53727378-53727397 None:intergenic 35.0%
! TTTGCAAGAAGATGTTGCTT+AGG - chr8_1:53727657-53727676 Msa1200780:intron 35.0%
! TTGCAAGAAGATGTTGCTTA+GGG - chr8_1:53727658-53727677 Msa1200780:intron 35.0%
! TACATGCCTGTTGATTGAAT+TGG + chr8_1:53727721-53727740 None:intergenic 35.0%
!! CAGTGCTCTAAAGTACAATT+AGG - chr8_1:53727762-53727781 Msa1200780:intron 35.0%
! GCAGATTTGCTTATCTTTGT+TGG - chr8_1:53727801-53727820 Msa1200780:intron 35.0%
! ATTCAAAGCATTCCATCCTT+TGG + chr8_1:53727886-53727905 None:intergenic 35.0%
GATAGACCATTGCTTATTTG+TGG - chr8_1:53728033-53728052 Msa1200780:intron 35.0%
GGTTCATAAATAGACAGCAA+AGG - chr8_1:53728054-53728073 Msa1200780:intron 35.0%
!! GGAAAATTTTGAGCTTGCTT+TGG - chr8_1:53728075-53728094 Msa1200780:intron 35.0%
!! AAATTTTGAGCTTGCTTTGG+AGG - chr8_1:53728078-53728097 Msa1200780:intron 35.0%
CATATGAAATACCATGTTCC+TGG - chr8_1:53728145-53728164 Msa1200780:intron 35.0%
GAAGAAACAAAACATAACGG+AGG + chr8_1:53728204-53728223 None:intergenic 35.0%
GAAAAGAACTGTGTTGTCTA+GGG - chr8_1:53728448-53728467 Msa1200780:intron 35.0%
! GGGCATTTTGAACAGAAAAT+AGG - chr8_1:53728468-53728487 Msa1200780:intron 35.0%
TGAGTAGCTATTCACAAGAA+TGG - chr8_1:53728636-53728655 Msa1200780:intron 35.0%
TTGCAAAAATATAATCGGGC+AGG + chr8_1:53729179-53729198 None:intergenic 35.0%
ATATGTTTGGAGACAGAATG+AGG - chr8_1:53729308-53729327 Msa1200780:intron 35.0%
GACAGGATCAAAGTTACATA+AGG + chr8_1:53729395-53729414 None:intergenic 35.0%
! GATGCATTTGAAATTGTGAC+AGG + chr8_1:53729412-53729431 None:intergenic 35.0%
TCAAATATACAGCACCCAAA+AGG + chr8_1:53729488-53729507 None:intergenic 35.0%
! TGTATTCACTTTAAGAGCGA+GGG + chr8_1:53729757-53729776 None:intergenic 35.0%
! ATGTATTCACTTTAAGAGCG+AGG + chr8_1:53729758-53729777 None:intergenic 35.0%
CAATAAAGGTTCAGTATGCA+TGG - chr8_1:53730104-53730123 Msa1200780:intron 35.0%
!!! TTTTTTTGCTATTGGCCTAG+TGG - chr8_1:53730150-53730169 Msa1200780:intron 35.0%
!!! ATTTATGTGTTTTGGCCACT+AGG + chr8_1:53730168-53730187 None:intergenic 35.0%
TGATTTATAGCATGCAGTCA+GGG - chr8_1:53730250-53730269 Msa1200780:intron 35.0%
AAATGTGTTGTCTTTAGCGT+AGG + chr8_1:53730388-53730407 None:intergenic 35.0%
ATTCAGAAACTATAGGCACT+TGG - chr8_1:53730831-53730850 Msa1200780:intron 35.0%
!!! TCTGCATTTTTTGTAGAACC+AGG - chr8_1:53731206-53731225 Msa1200780:intron 35.0%
!! GTACAATCCAACCGATTTTA+CGG - chr8_1:53731277-53731296 Msa1200780:CDS 35.0%
GGCAAAAATTGAAAGTGGTT+TGG + chr8_1:53731326-53731345 None:intergenic 35.0%
GTAATAGGTGTCAATAGCTT+AGG - chr8_1:53731410-53731429 Msa1200780:intron 35.0%
TTGTACTATAGAGGAAACTC+AGG - chr8_1:53731444-53731463 Msa1200780:intron 35.0%
! AATCCGACACCAAACATTTT+TGG - chr8_1:53731552-53731571 Msa1200780:CDS 35.0%
GTCTATTACATGTTCTTCAG+GGG + chr8_1:53731747-53731766 None:intergenic 35.0%
! AAAGCAGTGCTGGAATAAAA+GGG + chr8_1:53732079-53732098 None:intergenic 35.0%
! AAAAGCAGTGCTGGAATAAA+AGG + chr8_1:53732080-53732099 None:intergenic 35.0%
ATTATCAGAAAAAGCAGTGC+TGG + chr8_1:53732089-53732108 None:intergenic 35.0%
! GTTTGAGACTGTTGAAGTTA+TGG + chr8_1:53732149-53732168 None:intergenic 35.0%
ACTTCAACAGTCTCAAACTA+TGG - chr8_1:53732151-53732170 Msa1200780:intron 35.0%
CTGTGTATAATTCCCAAACA+TGG + chr8_1:53732202-53732221 None:intergenic 35.0%
CATGTTTGGGAATTATACAC+AGG - chr8_1:53732200-53732219 Msa1200780:intron 35.0%
! TTTTCTTTTGCCATCTCTAC+TGG + chr8_1:53732484-53732503 None:intergenic 35.0%
TACATATCATCTATTCCCAC+CGG - chr8_1:53732607-53732626 Msa1200780:intron 35.0%
GTGTAATATGGTGACTGATA+AGG - chr8_1:53732680-53732699 Msa1200780:intron 35.0%
GAAATGTTAACCAGTACCCT+CGG - chr8_1:53726552-53726571 Msa1200780:three_prime_UTR 40.0%
AAATGTTAACCAGTACCCTC+GGG - chr8_1:53726553-53726572 Msa1200780:three_prime_UTR 40.0%
! ACCCTTATTTGTATTGCCCA+TGG - chr8_1:53726680-53726699 Msa1200780:three_prime_UTR 40.0%
GTATTGCCCATGGTAAAGTT+TGG - chr8_1:53726690-53726709 Msa1200780:three_prime_UTR 40.0%
! GGATGTATATTTCTATGCGG+TGG - chr8_1:53726711-53726730 Msa1200780:intron 40.0%
! TGTATATTTCTATGCGGTGG+CGG - chr8_1:53726714-53726733 Msa1200780:intron 40.0%
CGGATGCATTCATATGAGAT+TGG - chr8_1:53726734-53726753 Msa1200780:intron 40.0%
ATCGGAACAATAATGGTAGC+GGG + chr8_1:53727508-53727527 None:intergenic 40.0%
CATCGGAACAATAATGGTAG+CGG + chr8_1:53727509-53727528 None:intergenic 40.0%
AGCATGCATCGGAACAATAA+TGG + chr8_1:53727515-53727534 None:intergenic 40.0%
AAATCGCTAGTAGCATGCAT+CGG + chr8_1:53727526-53727545 None:intergenic 40.0%
!! CTTGTTTCTATGTTACAGGC+AGG - chr8_1:53727629-53727648 Msa1200780:intron 40.0%
GGATATTGTTGTATGCAGAG+AGG - chr8_1:53727822-53727841 Msa1200780:intron 40.0%
TCCTTTGGCAATAAACTCCA+TGG + chr8_1:53727871-53727890 None:intergenic 40.0%
TGGAGTTTATTGCCAAAGGA+TGG - chr8_1:53727871-53727890 Msa1200780:intron 40.0%
GAGCGATTACGTTAAGAAGA+GGG + chr8_1:53727959-53727978 None:intergenic 40.0%
ACAACTCCAATACTCATGCT+AGG - chr8_1:53728104-53728123 Msa1200780:intron 40.0%
CCAATACCTAGCATGAGTAT+TGG + chr8_1:53728113-53728132 None:intergenic 40.0%
CCAATACTCATGCTAGGTAT+TGG - chr8_1:53728110-53728129 Msa1200780:intron 40.0%
GGAAAAGAACTGTGTTGTCT+AGG - chr8_1:53728447-53728466 Msa1200780:intron 40.0%
AGAAACGCCGTGTAATGATT+TGG + chr8_1:53728565-53728584 None:intergenic 40.0%
! GGGTTGTCATTTAAGAGTAG+AGG - chr8_1:53728856-53728875 Msa1200780:intron 40.0%
GTCATTTAAGAGTAGAGGTG+AGG - chr8_1:53728861-53728880 Msa1200780:intron 40.0%
! AAGGAGGCATGGATGAATAA+TGG + chr8_1:53728966-53728985 None:intergenic 40.0%
GGGCAGGACAATAAAAACAA+AGG + chr8_1:53729163-53729182 None:intergenic 40.0%
! TCCAGAAGCTCTTTACCTTT+TGG - chr8_1:53729470-53729489 Msa1200780:intron 40.0%
! CCAGAAGCTCTTTACCTTTT+GGG - chr8_1:53729471-53729490 Msa1200780:intron 40.0%
! TTGGGTGCTGTATATTTGAC+TGG - chr8_1:53729489-53729508 Msa1200780:intron 40.0%
!!! TATCCGTACTTTTTCACGTG+CGG - chr8_1:53729666-53729685 Msa1200780:intron 40.0%
! CGGTGATTTAGAATGAGTTC+AGG - chr8_1:53729686-53729705 Msa1200780:intron 40.0%
TAAAGGTTCAGTATGCATGG+AGG - chr8_1:53730107-53730126 Msa1200780:intron 40.0%
GTGATTTATAGCATGCAGTC+AGG - chr8_1:53730249-53730268 Msa1200780:intron 40.0%
CGCCGAATCATAATTAAAGG+AGG - chr8_1:53730304-53730323 Msa1200780:intron 40.0%
ATAACCAAGTGCAGCTTGAA+AGG + chr8_1:53730759-53730778 None:intergenic 40.0%
TTTCAAGCTGCACTTGGTTA+TGG - chr8_1:53730758-53730777 Msa1200780:intron 40.0%
ATGAAAAAGATGCAAGCGGT+CGG + chr8_1:53731242-53731261 None:intergenic 40.0%
!! AACCGATTTTACGGCTTTGT+GGG - chr8_1:53731286-53731305 Msa1200780:CDS 40.0%
!! CTGGCTTGTTTGTACTATAG+AGG - chr8_1:53731435-53731454 Msa1200780:intron 40.0%
TCAGGAAAGTAACGTCAAGT+AGG - chr8_1:53731462-53731481 Msa1200780:intron 40.0%
TTTACAACAGACCTTCCTAG+TGG - chr8_1:53731632-53731651 Msa1200780:intron 40.0%
GAATCATCTCTAACTCCACT+AGG + chr8_1:53731650-53731669 None:intergenic 40.0%
ACATCAATAGCTTAGGTGCT+GGG - chr8_1:53731765-53731784 Msa1200780:CDS 40.0%
GCTTAATCTGATCAGTGATC+AGG + chr8_1:53731854-53731873 None:intergenic 40.0%
!! TTTAACTCCAGTTCAGGTTG+TGG + chr8_1:53731880-53731899 None:intergenic 40.0%
TGCTTGTTTAACTCCAGTTC+AGG + chr8_1:53731886-53731905 None:intergenic 40.0%
AAGAAAGGATATTGTGCCTC+AGG - chr8_1:53732364-53732383 Msa1200780:intron 40.0%
!!! TTCTGGAATTTTGACACCTG+AGG + chr8_1:53732383-53732402 None:intergenic 40.0%
TGCAATTGATCCAGTAGAGA+TGG - chr8_1:53732471-53732490 Msa1200780:intron 40.0%
TTTCAGATAGCTGCAAAAGC+AGG - chr8_1:53732505-53732524 Msa1200780:intron 40.0%
GCTGTGATCTTGGATTCAAA+TGG - chr8_1:53732527-53732546 Msa1200780:intron 40.0%
! TTGGATTCAAATGGCTTGCA+AGG - chr8_1:53732536-53732555 Msa1200780:intron 40.0%
! TCTAAAATGGCTTGTGCAAC+TGG + chr8_1:53732732-53732751 None:intergenic 40.0%
ACCTCAACTAACACTCTTAC+CGG - chr8_1:53732844-53732863 Msa1200780:intron 40.0%
AATGTTAACCAGTACCCTCG+GGG - chr8_1:53726554-53726573 Msa1200780:three_prime_UTR 45.0%
CATGTTAACCAGTGTCCTGA+GGG + chr8_1:53726660-53726679 None:intergenic 45.0%
TCATGTTAACCAGTGTCCTG+AGG + chr8_1:53726661-53726680 None:intergenic 45.0%
!!! CCAGTTGATCGGAGGTATTT+TGG + chr8_1:53727367-53727386 None:intergenic 45.0%
CCAAAATACCTCCGATCAAC+TGG - chr8_1:53727364-53727383 Msa1200780:intron 45.0%
TCAGTTAACCAGTTGATCGG+AGG + chr8_1:53727375-53727394 None:intergenic 45.0%
AGCGGGTAAAGCTATTATGG+CGG + chr8_1:53727491-53727510 None:intergenic 45.0%
!! GGTAGCGGGTAAAGCTATTA+TGG + chr8_1:53727494-53727513 None:intergenic 45.0%
TAGCAGGAACAAGAAAGCCA+TGG - chr8_1:53727851-53727870 Msa1200780:intron 45.0%
GCCATGGAGTTTATTGCCAA+AGG - chr8_1:53727867-53727886 Msa1200780:intron 45.0%
CGAGCGATTACGTTAAGAAG+AGG + chr8_1:53727960-53727979 None:intergenic 45.0%
! CCTTATTTGCTCCAGGAACA+TGG + chr8_1:53728159-53728178 None:intergenic 45.0%
CCATGTTCCTGGAGCAAATA+AGG - chr8_1:53728156-53728175 Msa1200780:intron 45.0%
!! TACACAGCCTTATTTGCTCC+AGG + chr8_1:53728166-53728185 None:intergenic 45.0%
!!! ATTTTTTCCGCCTTTTCCCC+TGG - chr8_1:53728767-53728786 Msa1200780:intron 45.0%
ACTGGTAGAAGCAGCAGATA+TGG - chr8_1:53728808-53728827 Msa1200780:intron 45.0%
CTGGTAGAAGCAGCAGATAT+GGG - chr8_1:53728809-53728828 Msa1200780:intron 45.0%
TCCTGATGCACAGTATGCAT+TGG - chr8_1:53728835-53728854 Msa1200780:intron 45.0%
CCTGATGCACAGTATGCATT+GGG - chr8_1:53728836-53728855 Msa1200780:intron 45.0%
TATGACCTTCGGGATGAGAA+TGG - chr8_1:53729067-53729086 Msa1200780:intron 45.0%
!! TGGCTAGTCTGCATGCAAAA+TGG - chr8_1:53729091-53729110 Msa1200780:intron 45.0%
TTTGGAGAAAGCTGTGGATC+AGG - chr8_1:53729362-53729381 Msa1200780:intron 45.0%
AAAGAGCTTCTGGATGCAAC+TGG + chr8_1:53729464-53729483 None:intergenic 45.0%
CCCAAAAGGTAAAGAGCTTC+TGG + chr8_1:53729474-53729493 None:intergenic 45.0%
AAGATATTGCTTCGGCGTTG+TGG - chr8_1:53729526-53729545 Msa1200780:intron 45.0%
! TTTCCATAGGGCATCAGAGA+AGG - chr8_1:53729551-53729570 Msa1200780:intron 45.0%
TTACCTTCTCTGATGCCCTA+TGG + chr8_1:53729557-53729576 None:intergenic 45.0%
TCACCGCACGTGAAAAAGTA+CGG + chr8_1:53729672-53729691 None:intergenic 45.0%
! TGGTCAGGAGCTTTTAAGCA+TGG - chr8_1:53730217-53730236 Msa1200780:intron 45.0%
TTTATAGCATGCAGTCAGGG+AGG - chr8_1:53730253-53730272 Msa1200780:intron 45.0%
AGCATGTCCCTACAAGTACA+TGG + chr8_1:53730611-53730630 None:intergenic 45.0%
ATGTACTTGTAGGGACATGC+TGG - chr8_1:53730610-53730629 Msa1200780:CDS 45.0%
TGTACTTGTAGGGACATGCT+GGG - chr8_1:53730611-53730630 Msa1200780:CDS 45.0%
AGTGCAGCTTGAAAGGAAGT+GGG + chr8_1:53730752-53730771 None:intergenic 45.0%
AAGTGCAGCTTGAAAGGAAG+TGG + chr8_1:53730753-53730772 None:intergenic 45.0%
ACTTCCTTTCAAGCTGCACT+TGG - chr8_1:53730752-53730771 Msa1200780:intron 45.0%
TGAAAAAGATGCAAGCGGTC+GGG + chr8_1:53731241-53731260 None:intergenic 45.0%
CACAAAGCCGTAAAATCGGT+TGG + chr8_1:53731287-53731306 None:intergenic 45.0%
!! CAACCGATTTTACGGCTTTG+TGG - chr8_1:53731285-53731304 Msa1200780:CDS 45.0%
TGCCCACAAAGCCGTAAAAT+CGG + chr8_1:53731291-53731310 None:intergenic 45.0%
GGCGAGGCAAAAATTGAAAG+TGG + chr8_1:53731331-53731350 None:intergenic 45.0%
GGTGTCAATAGCTTAGGTTC+TGG - chr8_1:53731416-53731435 Msa1200780:intron 45.0%
CATCTCTAACTCCACTAGGA+AGG + chr8_1:53731646-53731665 None:intergenic 45.0%
GACATCAATAGCTTAGGTGC+TGG - chr8_1:53731764-53731783 Msa1200780:CDS 45.0%
AAGCAAACCACAACCTGAAC+TGG - chr8_1:53731870-53731889 Msa1200780:intron 45.0%
! CAAATGGCTTGCAAGGTTAG+AGG - chr8_1:53732543-53732562 Msa1200780:intron 45.0%
!! ACCGGTAAGAGTGTTAGTTG+AGG + chr8_1:53732848-53732867 None:intergenic 45.0%
!!! TTTTAATATATATATATGTT+TGG - chr8_1:53729295-53729314 Msa1200780:intron 5.0%
TTTCCTTAACCAGTGCCCTC+AGG - chr8_1:53726642-53726661 Msa1200780:three_prime_UTR 50.0%
GATGAGAGAGTGAGACACCA+CGG + chr8_1:53727413-53727432 None:intergenic 50.0%
GTGTCTCACTCTCTCATCTC+AGG - chr8_1:53727415-53727434 Msa1200780:intron 50.0%
GGGTAAAGCTATTATGGCGG+TGG + chr8_1:53727488-53727507 None:intergenic 50.0%
TGCAGAGAGGATTGCATAGC+AGG - chr8_1:53727835-53727854 Msa1200780:intron 50.0%
CCCAATGCATACTGTGCATC+AGG + chr8_1:53728839-53728858 None:intergenic 50.0%
ACCTTCGGGATGAGAATGGT+TGG - chr8_1:53729071-53729090 Msa1200780:intron 50.0%
AGTCTGCATGCAAAATGGCC+TGG - chr8_1:53729096-53729115 Msa1200780:intron 50.0%
GTCTGCATGCAAAATGGCCT+GGG - chr8_1:53729097-53729116 Msa1200780:intron 50.0%
GACCACATAATATCCCACCC+AGG + chr8_1:53729117-53729136 None:intergenic 50.0%
GGCGTTGTGGTGTTTCCATA+GGG - chr8_1:53729539-53729558 Msa1200780:intron 50.0%
CATGCCATGCGAAAACTGTC+AGG + chr8_1:53729788-53729807 None:intergenic 50.0%
! CTGACAGTTTTCGCATGGCA+TGG - chr8_1:53729786-53729805 Msa1200780:intron 50.0%
GTATGCATGGAGGCCTTGAA+AGG - chr8_1:53730117-53730136 Msa1200780:intron 50.0%
AGCTCCTGACCAACCACATT+TGG + chr8_1:53730209-53730228 None:intergenic 50.0%
GTACTTGTAGGGACATGCTG+GGG - chr8_1:53730612-53730631 Msa1200780:CDS 50.0%
! AAAGGAAGTGGGGATGGGTT+TGG + chr8_1:53730741-53730760 None:intergenic 50.0%
GCTTGAAAGGAAGTGGGGAT+GGG + chr8_1:53730746-53730765 None:intergenic 50.0%
AGCTTGAAAGGAAGTGGGGA+TGG + chr8_1:53730747-53730766 None:intergenic 50.0%
GTGCAGCTTGAAAGGAAGTG+GGG + chr8_1:53730751-53730770 None:intergenic 50.0%
TCAGAATCGAGATCCTACCC+AGG - chr8_1:53730965-53730984 Msa1200780:intron 50.0%
ATCGAGATCCTACCCAGGAT+CGG - chr8_1:53730970-53730989 Msa1200780:intron 50.0%
CAGGATCGTATCATGGATCG+AGG - chr8_1:53731003-53731022 Msa1200780:intron 50.0%
TTCTGCCTATGAGTGAGCTC+TGG + chr8_1:53731352-53731371 None:intergenic 50.0%
!! TGGTGGGTTGATTGCATCGT+TGG - chr8_1:53732311-53732330 Msa1200780:intron 50.0%
!! GGTGGGTTGATTGCATCGTT+GGG - chr8_1:53732312-53732331 Msa1200780:intron 50.0%
GCAAAAGCAGGCTGTGATCT+TGG - chr8_1:53732517-53732536 Msa1200780:intron 50.0%
! ATGGCTTGCAAGGTTAGAGG+AGG - chr8_1:53732546-53732565 Msa1200780:intron 50.0%
GGTTAGAGGAGGAAGAGAAG+CGG - chr8_1:53732557-53732576 Msa1200780:intron 50.0%
!! TACCCTCGGGGCACTGATTA+AGG - chr8_1:53726566-53726585 Msa1200780:three_prime_UTR 55.0%
CTCCTTAATCAGTGCCCCGA+GGG + chr8_1:53726571-53726590 None:intergenic 55.0%
ACTCCTTAATCAGTGCCCCG+AGG + chr8_1:53726572-53726591 None:intergenic 55.0%
!! TGTCCTGAGGGCACTGGTTA+AGG + chr8_1:53726648-53726667 None:intergenic 55.0%
TCTGTTGCCAGGGGAAAAGG+CGG + chr8_1:53728777-53728796 None:intergenic 55.0%
! CTTTTCCCCTGGCAACAGAG+CGG - chr8_1:53728778-53728797 Msa1200780:CDS 55.0%
CAACAGAGCGGCAGCATTAC+TGG - chr8_1:53728790-53728809 Msa1200780:CDS 55.0%
GCCAACCATTCTCATCCCGA+AGG + chr8_1:53729075-53729094 None:intergenic 55.0%
TGCATGCAAAATGGCCTGGG+TGG - chr8_1:53729100-53729119 Msa1200780:intron 55.0%
GCATGCAAAATGGCCTGGGT+GGG - chr8_1:53729101-53729120 Msa1200780:intron 55.0%
GGCCTGGGTGGGATATTATG+TGG - chr8_1:53729112-53729131 Msa1200780:intron 55.0%
CGGCGTTGTGGTGTTTCCAT+AGG - chr8_1:53729538-53729557 Msa1200780:intron 55.0%
! CGCACCTGACAGTTTTCGCA+TGG - chr8_1:53729781-53729800 Msa1200780:intron 55.0%
! AGGGCCAAATGTGGTTGGTC+AGG - chr8_1:53730202-53730221 Msa1200780:intron 55.0%
GATTCGGCGAAAGGGTCATC+AGG + chr8_1:53730293-53730312 None:intergenic 55.0%
GCTGGGGCAGCTATTGCATA+TGG - chr8_1:53730628-53730647 Msa1200780:intron 55.0%
! TGGGGATGGGTTTGGATGCA+TGG + chr8_1:53730733-53730752 None:intergenic 55.0%
TCGAGATCCTACCCAGGATC+GGG - chr8_1:53730971-53730990 Msa1200780:intron 55.0%
ATCCTACCCAGGATCGGGAA+GGG - chr8_1:53730976-53730995 Msa1200780:intron 55.0%
! AATCAGTGCCCCGAGGGTAC+TGG + chr8_1:53726565-53726584 None:intergenic 60.0%
AACCAGTGCCCTCAGGACAC+TGG - chr8_1:53726649-53726668 Msa1200780:three_prime_UTR 60.0%
! AACCAGTGTCCTGAGGGCAC+TGG + chr8_1:53726654-53726673 None:intergenic 60.0%
GAGAGAGTGAGACACCACGG+CGG + chr8_1:53727410-53727429 None:intergenic 60.0%
GGCGGTGGCAACCAGAGAAA+TGG + chr8_1:53727473-53727492 None:intergenic 60.0%
CGCTCTGTTGCCAGGGGAAA+AGG + chr8_1:53728780-53728799 None:intergenic 60.0%
ATGCTGCCGCTCTGTTGCCA+GGG + chr8_1:53728787-53728806 None:intergenic 60.0%
AATGCTGCCGCTCTGTTGCC+AGG + chr8_1:53728788-53728807 None:intergenic 60.0%
CACACTGGGAGGGCCAAATG+TGG - chr8_1:53730193-53730212 Msa1200780:intron 60.0%
CTGGGAGGGCCAAATGTGGT+TGG - chr8_1:53730197-53730216 Msa1200780:intron 60.0%
GATCCTACCCAGGATCGGGA+AGG - chr8_1:53730975-53730994 Msa1200780:intron 60.0%
TCCTACCCAGGATCGGGAAG+GGG - chr8_1:53730977-53730996 Msa1200780:intron 60.0%
! GGGGGCACAGGATCGTATCA+TGG - chr8_1:53730996-53731015 Msa1200780:intron 60.0%
! CCTATGAGTGAGCTCTGGCG+AGG + chr8_1:53731347-53731366 None:intergenic 60.0%
CCTCGCCAGAGCTCACTCAT+AGG - chr8_1:53731344-53731363 Msa1200780:CDS 60.0%
GGTGCAGCTGCTCAAATGCG+AGG - chr8_1:53732430-53732449 Msa1200780:intron 60.0%
AGAGTGAGACACCACGGCGG+TGG + chr8_1:53727407-53727426 None:intergenic 65.0%
TGCTGCCGCTCTGTTGCCAG+GGG + chr8_1:53728786-53728805 None:intergenic 65.0%
CCTACCCAGGATCGGGAAGG+GGG - chr8_1:53730978-53730997 Msa1200780:intron 65.0%
TGTGCCCCCTTCCCGATCCT+GGG + chr8_1:53730985-53731004 None:intergenic 65.0%
GTGAGACACCACGGCGGTGG+CGG + chr8_1:53727404-53727423 None:intergenic 70.0%
CCCCCTTCCCGATCCTGGGT+AGG + chr8_1:53730981-53731000 None:intergenic 70.0%
CTGTGCCCCCTTCCCGATCC+TGG + chr8_1:53730986-53731005 None:intergenic 70.0%
! CAGGATCGGGAAGGGGGCAC+AGG - chr8_1:53730984-53731003 Msa1200780:intron 70.0%
GCGGTCGGGAACACGCAACC+TGG + chr8_1:53731227-53731246 None:intergenic 70.0%
! AGACACCACGGCGGTGGCGG+CGG + chr8_1:53727401-53727420 None:intergenic 75.0%
! GATCACCGCCGCCACCGCCG+TGG - chr8_1:53727393-53727412 Msa1200780:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 53726486 53732955 53726486 ID=Msa1200780;Name=Msa1200780
chr8_1 mRNA 53726486 53732955 53726486 ID=Msa1200780-mRNA-1;Parent=Msa1200780;Name=Msa1200780-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.8|0.72|0.90|0.8|0.72|11|324|275
chr8_1 exon 53726486 53726720 53726486 ID=Msa1200780-mRNA-1:exon:17249;Parent=Msa1200780-mRNA-1
chr8_1 exon 53726752 53727055 53726752 ID=Msa1200780-mRNA-1:exon:17248;Parent=Msa1200780-mRNA-1
chr8_1 exon 53728774 53728819 53728774 ID=Msa1200780-mRNA-1:exon:17247;Parent=Msa1200780-mRNA-1
chr8_1 exon 53729869 53729976 53729869 ID=Msa1200780-mRNA-1:exon:17246;Parent=Msa1200780-mRNA-1
chr8_1 exon 53730058 53730117 53730058 ID=Msa1200780-mRNA-1:exon:17245;Parent=Msa1200780-mRNA-1
chr8_1 exon 53730564 53730645 53730564 ID=Msa1200780-mRNA-1:exon:17244;Parent=Msa1200780-mRNA-1
chr8_1 exon 53731259 53731374 53731259 ID=Msa1200780-mRNA-1:exon:17243;Parent=Msa1200780-mRNA-1
chr8_1 exon 53731473 53731601 53731473 ID=Msa1200780-mRNA-1:exon:17242;Parent=Msa1200780-mRNA-1
chr8_1 exon 53731735 53731794 53731735 ID=Msa1200780-mRNA-1:exon:17241;Parent=Msa1200780-mRNA-1
chr8_1 exon 53731849 53731855 53731849 ID=Msa1200780-mRNA-1:exon:17240;Parent=Msa1200780-mRNA-1
chr8_1 exon 53732951 53732955 53732951 ID=Msa1200780-mRNA-1:exon:17239;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53732951 53732955 53732951 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53731849 53731855 53731849 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53731735 53731794 53731735 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53731473 53731601 53731473 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53731259 53731374 53731259 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53730564 53730645 53730564 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53730058 53730117 53730058 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53729869 53729976 53729869 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53728774 53728819 53728774 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 CDS 53726841 53727055 53726841 ID=Msa1200780-mRNA-1:cds;Parent=Msa1200780-mRNA-1
chr8_1 three_prime_UTR 53726752 53726840 53726752 ID=Msa1200780-mRNA-1:three_prime_utr;Parent=Msa1200780-mRNA-1
chr8_1 three_prime_UTR 53726486 53726720 53726486 ID=Msa1200780-mRNA-1:three_prime_utr;Parent=Msa1200780-mRNA-1
Gene Sequence

>Msa1200780

ATGAAGTTTATAGCAGGAATCGTTTGCAAGAAGATGTTGCTTAGGGCATTGTTGCCCAAAATCACTCCAAATAGAGGATTGCATAGCAGGAACAAGAAAGCCATGGAGTTTATTGCCAAAGGATGGAATGCTTTGAATGAAGTTGATAGAGTCATTGATTATTGTGAGCTCAATGATAGGCGTCTCATCCCTCTTCTTAACACAGCAAAGGAAAATTTTGAGCTTGCTTTGGAGGCTGACAACTCCAATACTCATGCTAGGTATTGGTTGTCCAGATTGCATATGAAATACCATGTTCCTGGAGCAAATAAGGCTGTAGCGGCAGCATTACTGGTAGAAGCAGCAGATATGGGTGATCCTGATGCACAGTATGCATTGGGTTGTCATTTAAGAGTAGAGAATGAGGATATCCATTCAGATCAACAAGCTTTTTATTATTTGGAGAAAGCTGTGGATCAGTTGCATCCAGAAGCTCTTTACCTTTTGGGTGCTGTATATTTGACTGGCGATTGTGTTAAGAAAGATATTGCTTCGGCGTTGTGGTGTTTCCATAGGGCATCAGAGAAGGGACATGCTGGGGCAGCTATTGCATATGGATCTCTTCTTCTTAAAGGTGTCAAAATTCCAGAATCATTAATAAAGTTCAGTTTGAAGAGAGGTGCAGCTGCTCAAATGCGAGGTAAGAACAAAGAAAGTATTGCAATTGATCCAGTAGAGATGGCAAAAGAAAAATTTCAGATAGCTGCAAAAGCAGGCTGTGATCTTGGATTCAAATGGCTTGCAAGGTTAGAGGAGGAAGAGAAGCGGTTACTCACCCAAGATTATTAA

Protein sequence

>Msa1200780

MKFIAGIVCKKMLLRALLPKITPNRGLHSRNKKAMEFIAKGWNALNEVDRVIDYCELNDRRLIPLLNTAKENFELALEADNSNTHARYWLSRLHMKYHVPGANKAVAAALLVEAADMGDPDAQYALGCHLRVENEDIHSDQQAFYYLEKAVDQLHPEALYLLGAVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLKGVKIPESLIKFSLKRGAAAQMRGKNKESIAIDPVEMAKEKFQIAAKAGCDLGFKWLARLEEEEKRLLTQDY*