AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553220 MtrunA17_Chr4g0038901 98.234 906 6 1 1 906 1 896 0.0 1813
Msa0553220 MtrunA17_Chr3g0139471 33.702 724 405 16 12 679 18 722 2.89e-110 359
Msa0553220 MtrunA17_Chr5g0435291 34.389 221 128 4 24 243 41 245 2.76e-29 126
Msa0553220 MtrunA17_Chr5g0435291 29.697 330 201 7 238 547 322 640 1.30e-22 104
Msa0553220 MtrunA17_Chr4g0002381 21.218 476 312 12 19 466 21 461 8.10e-15 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553220 AT4G23460.1 85.055 910 115 4 1 906 1 893 0.0 1558
Msa0553220 AT4G11380.1 85.226 907 120 3 1 906 1 894 0.0 1527
Msa0553220 AT4G11380.2 83.208 929 120 4 1 906 1 916 0.0 1513
Msa0553220 AT4G23460.2 84.596 805 113 3 106 906 2 799 0.0 1380
Msa0553220 AT5G11490.1 35.430 604 354 13 12 595 17 604 1.11e-105 347
Msa0553220 AT5G11490.2 35.430 604 354 13 12 595 17 604 1.44e-105 347
Msa0553220 AT5G11490.3 35.866 566 334 12 43 595 1 550 1.11e-100 332
Msa0553220 AT3G55480.2 36.199 221 124 4 24 243 41 245 4.02e-28 122
Msa0553220 AT3G55480.2 28.399 331 203 9 251 558 339 658 4.44e-22 103
Msa0553220 AT3G55480.1 28.399 331 203 9 251 558 211 530 4.32e-22 103

Find 227 sgRNAs with CRISPR-Local

Find 611 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATAAATGTTGACATTTC+AGG 0.156965 4_1:-50162713 None:intergenic
AGCTGCTCTCTCTAATTTAA+TGG 0.158134 4_1:-50159165 None:intergenic
CAAATGTGTTCTTGTTAAAT+TGG 0.165232 4_1:-50161910 None:intergenic
TTGCATGCAAACAGAAAATT+TGG 0.170636 4_1:+50155860 Msa0553220:CDS
CGAGCTTCTTGAAAGTTTCT+TGG 0.175476 4_1:+50159604 Msa0553220:CDS
TTCAAACTTAAACATCAATT+TGG 0.212344 4_1:-50162851 None:intergenic
GACCAGCCAGCTGCTCCTTC+AGG 0.234375 4_1:+50161021 Msa0553220:CDS
CTCACAAAGAGTTGCAATTA+TGG 0.248644 4_1:-50159412 None:intergenic
GACTTCCCTGCAATTGTAAT+TGG 0.251072 4_1:+50162506 Msa0553220:CDS
AATTCTTGCACATGAAATTA+AGG 0.258946 4_1:+50158296 Msa0553220:CDS
ACATTTGGTCTTGCAGCTGC+TGG 0.280676 4_1:+50161926 Msa0553220:CDS
TGATCCTATATATGTGAAAA+TGG 0.282338 4_1:+50158459 Msa0553220:CDS
TTGGACTAGCGCAGGTTCTT+CGG 0.290227 4_1:-50159636 None:intergenic
AATTCTCAAGTTCCACTTGA+TGG 0.296428 4_1:+50161878 Msa0553220:CDS
TTAAGCTCTTCTTTGAGTTC+AGG 0.296920 4_1:-50154458 None:intergenic
ACAGCTAAGGCACGAATTAA+AGG 0.297318 4_1:-50156254 None:intergenic
AAGGCACGAATTAAAGGATT+TGG 0.302488 4_1:-50156248 None:intergenic
TGGACTAGCGCAGGTTCTTC+GGG 0.303916 4_1:-50159635 None:intergenic
TGCGGCACTCGCTGAAATTC+AGG 0.309014 4_1:+50156639 Msa0553220:CDS
GCATCAATGATCTGGATAAT+TGG 0.309591 4_1:+50159551 Msa0553220:CDS
AGCTTACCTGGTCTATATTT+CGG 0.310084 4_1:-50158516 None:intergenic
GCGGACCTTGGGACATGTTC+TGG 0.317144 4_1:-50162096 None:intergenic
GGCCCTCAGTTGGCTTCTTA+AGG 0.329378 4_1:-50159691 None:intergenic
AAGCCATCGAGTCTCTTCTT+AGG 0.334967 4_1:+50162738 Msa0553220:CDS
GGGCCCACAGCAGATGATTC+AGG 0.341638 4_1:+50159709 Msa0553220:CDS
TTGGAAACTTCATTTGAATC+AGG 0.346160 4_1:-50162482 None:intergenic
TGCAGCTGCTGGGCCCCTGC+AGG 0.346760 4_1:+50161937 Msa0553220:CDS
AATGTTGACATTTCAGGGCT+TGG 0.368312 4_1:-50162707 None:intergenic
AAATCAGTGCACAGCTTACT+AGG 0.371520 4_1:+50161816 Msa0553220:CDS
ACTGCCTGCTTCAACTGGTC+AGG 0.372776 4_1:+50161787 Msa0553220:CDS
AGAAAGGCTGTTCGTGCAAT+TGG 0.378274 4_1:+50159134 Msa0553220:CDS
CAATTTAACAAGAACACATT+TGG 0.378772 4_1:+50161911 Msa0553220:CDS
GTGCGGGTAACAAATGCTTC+AGG 0.379627 4_1:-50160781 None:intergenic
ATCAAATCACCAAGTAAATC+TGG 0.390549 4_1:-50160967 None:intergenic
GAAAGAAAACAATACGTGTT+GGG 0.396780 4_1:-50159287 None:intergenic
ACCAGCCAGCTGCTCCTTCA+GGG 0.397538 4_1:+50161022 Msa0553220:CDS
CGACAGTACAACTGCACAAT+TGG 0.398220 4_1:-50157984 None:intergenic
ACACCACCAATTACAATTGC+AGG 0.401904 4_1:-50162512 None:intergenic
AGTGTCCTAGCTGATGTTCC+AGG 0.404154 4_1:-50162055 None:intergenic
CTTCGTTGTGGAGAAGTACT+TGG 0.407664 4_1:-50154423 None:intergenic
AGATTTACTTGGTGATTTGA+TGG 0.408236 4_1:+50160969 Msa0553220:CDS
TATGCACGATCTCGCAAATC+AGG 0.410180 4_1:-50160314 None:intergenic
TGTTACCCGCACACTTGCTT+CGG 0.411432 4_1:+50160792 Msa0553220:CDS
TAAGCTCTTCTTTGAGTTCA+GGG 0.415409 4_1:-50154457 None:intergenic
GAGATCGTGCATACATATAT+TGG 0.416999 4_1:+50160324 Msa0553220:CDS
AGATAAATGTTGACATTTCA+GGG 0.417984 4_1:-50162712 None:intergenic
ATTTCATGTGCAAGAATTGT+CGG 0.420714 4_1:-50158291 None:intergenic
CTGGACAGGCATCAATGATC+TGG 0.425383 4_1:+50159543 Msa0553220:intron
GCCTTAGCTGTGCGAACAAT+GGG 0.427730 4_1:+50156266 Msa0553220:CDS
ATCTGCTGTGGGCCCTCAGT+TGG 0.429553 4_1:-50159701 None:intergenic
AGTTGTACTGTCGGCTGTTA+AGG 0.429858 4_1:+50157994 Msa0553220:CDS
GTTGTACTGCCTGCTTCAAC+TGG 0.430164 4_1:+50161782 Msa0553220:CDS
GCTGCTGTCTTGCGAACATA+TGG 0.433079 4_1:-50156499 None:intergenic
TCATCTGTAAATCCTGCTAA+TGG 0.446043 4_1:+50160862 Msa0553220:CDS
AAAACATATACCTTGGCTTC+GGG 0.448572 4_1:-50159456 None:intergenic
GAAAACATATACCTTGGCTT+CGG 0.450521 4_1:-50159457 None:intergenic
ATCGAACTTACCACAGTGGT+TGG 0.451475 4_1:+50162653 Msa0553220:CDS
CATTTGGTCTTGCAGCTGCT+GGG 0.453532 4_1:+50161927 Msa0553220:CDS
TACAATTGCAGGGAAGTCCT+TGG 0.454004 4_1:-50162501 None:intergenic
GTTGAAGCAGGCAGTACAAC+GGG 0.454683 4_1:-50161779 None:intergenic
TCGATTCAAATGTCAATGTC+GGG 0.458124 4_1:-50154361 None:intergenic
GTAGATGATCCTTCAACAAA+TGG 0.459935 4_1:+50158134 Msa0553220:intron
GCACCTTTAGACATCTTTGA+AGG 0.459959 4_1:-50156331 None:intergenic
GTAAATCCTGCTAATGGCCC+TGG 0.460366 4_1:+50160868 Msa0553220:CDS
AGATGCAGGTATTGTATAGC+TGG 0.467714 4_1:-50160905 None:intergenic
AGGGCAACATATTGTATCTC+AGG 0.473365 4_1:-50158237 None:intergenic
AACTGAGCTAGGCGGACCTT+GGG 0.475776 4_1:-50162107 None:intergenic
GATTTACTTGGTGATTTGAT+GGG 0.477092 4_1:+50160970 Msa0553220:CDS
GAAGCTGGTGCCACAGATGC+AGG 0.477195 4_1:-50160919 None:intergenic
ACCCTGAAGGAGCAGCTGGC+TGG 0.481300 4_1:-50161023 None:intergenic
TGACGCAACCGTGGAACGAC+TGG 0.483279 4_1:+50162535 Msa0553220:CDS
AACAACCATTGGATTATTGT+CGG 0.490394 4_1:-50156605 None:intergenic
CGAGTATAGCAAGGTCCGGC+TGG 0.491866 4_1:-50155929 None:intergenic
TTCCCTGCAATTGTAATTGG+TGG 0.493912 4_1:+50162509 Msa0553220:CDS
GACATCATTTGTTGAGAGGT+TGG 0.494000 4_1:+50162914 Msa0553220:three_prime_UTR
CGCAGTAAACACATTTGTAA+AGG 0.496156 4_1:+50155950 Msa0553220:CDS
CTGCCTGCTTCAACTGGTCA+GGG 0.498842 4_1:+50161788 Msa0553220:CDS
GCACCAGTGCCAGATTTACT+TGG 0.499633 4_1:+50160958 Msa0553220:CDS
CACCTTTAGACATCTTTGAA+GGG 0.501807 4_1:-50156330 None:intergenic
CAGGTTCCACAATTGCAACC+TGG 0.502234 4_1:+50162037 Msa0553220:intron
GGTGACCCAGGGCCATTAGC+AGG 0.502483 4_1:-50160874 None:intergenic
ACTCACCCTGAAGGAGCAGC+TGG 0.503317 4_1:-50161027 None:intergenic
ATACAGCTTTGCAACACAAA+TGG 0.504157 4_1:-50156521 None:intergenic
ACCACAGTGGTTGGAAACCC+TGG 0.504670 4_1:+50162662 Msa0553220:CDS
TGCGGGTAACAAATGCTTCA+GGG 0.508754 4_1:-50160780 None:intergenic
ATGCAGAGTTAGTTGAGGAC+AGG 0.508869 4_1:+50156551 Msa0553220:CDS
TCATTTGTTGAGAGGTTGGA+TGG 0.509619 4_1:+50162918 Msa0553220:three_prime_UTR
AAACTGAGCTAGGCGGACCT+TGG 0.509914 4_1:-50162108 None:intergenic
TCAATCTTATTGTACAAAGA+AGG 0.511281 4_1:+50158268 Msa0553220:CDS
CTCGATTCAAATGTCAATGT+CGG 0.511919 4_1:-50154362 None:intergenic
CAATAAGATTGATATTTCGC+AGG 0.512583 4_1:-50158257 None:intergenic
GCAACCTGTAAAACTGAGCT+AGG 0.514067 4_1:-50162118 None:intergenic
AGCTAGGACACTCCTTCCTA+TGG 0.514389 4_1:+50162066 Msa0553220:CDS
ACAGCATTAGCAACAACCAT+TGG 0.514656 4_1:-50156616 None:intergenic
GTACTTCTCCACAACGAAGA+AGG 0.514908 4_1:+50154427 Msa0553220:CDS
GCAGAAGGTGGAGGTGAAGC+TGG 0.515961 4_1:-50160934 None:intergenic
TGATGAGTTCCATTTGTTGA+AGG 0.516207 4_1:-50158143 None:intergenic
GACTCGGATTCACTTCCATC+AGG 0.516290 4_1:-50160841 None:intergenic
ATGACTAGTGATCTCAAAGA+TGG 0.516546 4_1:-50156677 None:intergenic
AAAGCGTAAGAATGCGAACC+AGG 0.519843 4_1:+50162583 Msa0553220:CDS
TCACCAGCACTGATGTGGTC+CGG 0.520844 4_1:+50158163 Msa0553220:CDS
AGGTTTATAGGCTAAAGAAA+TGG 0.521326 4_1:-50163009 None:intergenic
TGCCTTAGCTGTGCGAACAA+TGG 0.521875 4_1:+50156265 Msa0553220:CDS
CAATTGGCATGCTGTAACCG+TGG 0.521968 4_1:-50157968 None:intergenic
TTTGAGTCATCAGTTATCAC+AGG 0.523584 4_1:-50160685 None:intergenic
ATGAGAGAAAAGTCCTAAAA+CGG 0.524511 4_1:-50154300 None:intergenic
CTGAGAAGTAAAACACATCC+TGG 0.525115 4_1:-50162601 None:intergenic
AAACTTCATTTGAATCAGGA+AGG 0.528035 4_1:-50162478 None:intergenic
TAGCTGTCAGCAATTGTAGT+TGG 0.528611 4_1:-50159655 None:intergenic
ACTTGGTGATTTGATGGGCA+TGG 0.533230 4_1:+50160975 Msa0553220:CDS
TCCCATTGTTCGCACAGCTA+AGG 0.534752 4_1:-50156267 None:intergenic
ATTCCGGACCACATCAGTGC+TGG 0.535891 4_1:-50158166 None:intergenic
AGAGCTTAATTCTCAGTACA+AGG 0.537889 4_1:+50154472 Msa0553220:CDS
AGCAGGATTTACAGATGACT+CGG 0.538019 4_1:-50160857 None:intergenic
AGAAGCTCGTCAAGTAGAGA+AGG 0.541367 4_1:-50160718 None:intergenic
ATTGTATAGCTGGAAGTAGG+AGG 0.543155 4_1:-50160895 None:intergenic
CTTGGCTTCGGGCTCATCCA+AGG 0.543269 4_1:-50159445 None:intergenic
TCCCCTTCAAAGATGTCTAA+AGG 0.544453 4_1:+50156328 Msa0553220:CDS
TGATTCAAATGAAGTTTCCA+AGG 0.545833 4_1:+50162484 Msa0553220:CDS
TGTGGACATCATTTGTTGAG+AGG 0.545984 4_1:+50162910 Msa0553220:three_prime_UTR
TGATGCGGCCAGTCGTTCCA+CGG 0.546270 4_1:-50162543 None:intergenic
GTGATTGCTGCTATGACGGT+TGG 0.547275 4_1:+50155801 Msa0553220:CDS
GGCAGTACAACGGGCAAAGG+AGG 0.547858 4_1:-50161770 None:intergenic
CAGTGCACAGCTTACTAGGC+GGG 0.548300 4_1:+50161820 Msa0553220:CDS
CTGGAAGTAGGAGGTGACCC+AGG 0.552629 4_1:-50160886 None:intergenic
TTGATTGCACATTTGACACC+AGG 0.552977 4_1:-50162680 None:intergenic
AGTAAATTATGTGGTTCAAG+AGG 0.554444 4_1:+50159229 Msa0553220:CDS
TCTGGCACTGGTGCAGCAGA+AGG 0.554699 4_1:-50160949 None:intergenic
GATTTCACCCTTCTTCGTTG+TGG 0.555882 4_1:-50154435 None:intergenic
ACTGCGAGTATAGCAAGGTC+CGG 0.556265 4_1:-50155933 None:intergenic
AATTGTAGTTGGACTAGCGC+AGG 0.556300 4_1:-50159644 None:intergenic
AATAAGATTGATATTTCGCA+GGG 0.557713 4_1:-50158256 None:intergenic
GCAGGCAGTACAACGGGCAA+AGG 0.558226 4_1:-50161773 None:intergenic
AAAATATACAGACAAAAGAA+TGG 0.558273 4_1:-50155988 None:intergenic
TGCAGAGTTAGTTGAGGACA+GGG 0.558569 4_1:+50156552 Msa0553220:CDS
TTGTCTTCTCCAGGCAGCTA+AGG 0.559259 4_1:+50160642 Msa0553220:intron
CTGGGCCGAAGCAAGTGTGC+GGG 0.559342 4_1:-50160797 None:intergenic
GGCACTGGTGCAGCAGAAGG+TGG 0.559619 4_1:-50160946 None:intergenic
AAACCCTGACCAGTTGAAGC+AGG 0.559737 4_1:-50161791 None:intergenic
AATTGGCATGCTGTAACCGT+GGG 0.561317 4_1:-50157967 None:intergenic
TCTCAGCTAAACTGCCTCGA+GGG 0.563509 4_1:+50162618 Msa0553220:CDS
ATTTGAATCGAGCAGAAGGA+AGG 0.563669 4_1:+50154373 Msa0553220:five_prime_UTR
GGTATTGTATAGCTGGAAGT+AGG 0.565421 4_1:-50160898 None:intergenic
TTGTGAGAGCTTAGACACCT+TGG 0.567706 4_1:+50159428 Msa0553220:CDS
GTGGTAAGTTCGATTAAAAG+TGG 0.567943 4_1:-50162644 None:intergenic
CTTGGATGAGCCCGAAGCCA+AGG 0.568294 4_1:+50159446 Msa0553220:CDS
GGAGCAGCTGGCTGGTCAAG+AGG 0.568350 4_1:-50161015 None:intergenic
TTCCTTAAGAAGCCAACTGA+GGG 0.569283 4_1:+50159689 Msa0553220:CDS
TCACCAAGTAAATCTGGCAC+TGG 0.569726 4_1:-50160961 None:intergenic
TAAATCCTGCTAATGGCCCT+GGG 0.570659 4_1:+50160869 Msa0553220:CDS
TCTGGGCCGAAGCAAGTGTG+CGG 0.572053 4_1:-50160798 None:intergenic
CAAGATAAAAGTAAATTATG+TGG 0.572985 4_1:+50159220 Msa0553220:CDS
GATGTTCCAGGTTGCAATTG+TGG 0.573549 4_1:-50162043 None:intergenic
AGGACCTGAATCATCTGCTG+TGG 0.575338 4_1:-50159713 None:intergenic
TACTTCTCCACAACGAAGAA+GGG 0.578154 4_1:+50154428 Msa0553220:CDS
GAGAGTAATGTCACAAGAGG+AGG 0.579273 4_1:-50158207 None:intergenic
ACCTTTAGACATCTTTGAAG+GGG 0.581523 4_1:-50156329 None:intergenic
TGCTGCTATGACGGTTGGAA+AGG 0.583395 4_1:+50155806 Msa0553220:CDS
GGACCTGAATCATCTGCTGT+GGG 0.583785 4_1:-50159712 None:intergenic
TGACATTTGAATCGAGCAGA+AGG 0.585625 4_1:+50154369 Msa0553220:five_prime_UTR
TGGATCATGAATCCATCAAG+TGG 0.585680 4_1:-50161890 None:intergenic
GTATGCAATATTAACCTGCA+GGG 0.586830 4_1:-50161951 None:intergenic
CTATACAATACCTGCATCTG+TGG 0.587131 4_1:+50160909 Msa0553220:CDS
CACCACCAATTACAATTGCA+GGG 0.587784 4_1:-50162511 None:intergenic
AACTTCATTTGAATCAGGAA+GGG 0.589379 4_1:-50162477 None:intergenic
GATATCCGACAATAATCCAA+TGG 0.589535 4_1:+50156600 Msa0553220:CDS
GAAGATGATGACTATCCTGA+TGG 0.589822 4_1:+50160826 Msa0553220:CDS
GGTTGTTGCTAATGCTGTTG+CGG 0.590538 4_1:+50156621 Msa0553220:CDS
AAAGAAAACAATACGTGTTG+GGG 0.594450 4_1:-50159286 None:intergenic
AAATTATGCAAAGAGCCAGC+CGG 0.594573 4_1:+50155914 Msa0553220:CDS
AAACCTCAGGGTCAGTTGAG+AGG 0.598260 4_1:-50160352 None:intergenic
CACTGTTGCATATATAACTG+TGG 0.599756 4_1:+50162884 Msa0553220:three_prime_UTR
CAAGGCTGCTGATGCACGTG+AGG 0.600260 4_1:+50157919 Msa0553220:CDS
ACGCTCCATTCTACCATCCT+CGG 0.600658 4_1:-50162206 None:intergenic
GGACGCTCTTTCTAGATACA+AGG 0.603895 4_1:+50157901 Msa0553220:CDS
TGAAATACCACACAGGCTGT+TGG 0.604545 4_1:-50162153 None:intergenic
ACTGGTGCAGCAGAAGGTGG+AGG 0.605496 4_1:-50160943 None:intergenic
AAAAGTGATTGCTGCTATGA+CGG 0.608991 4_1:+50155797 Msa0553220:CDS
AGGGCGGAGCAAAGATGAGT+CGG 0.611860 4_1:+50154393 Msa0553220:exon
TGGAAGTAGGAGGTGACCCA+GGG 0.612011 4_1:-50160885 None:intergenic
TTTGAATCGAGCAGAAGGAA+GGG 0.614812 4_1:+50154374 Msa0553220:five_prime_UTR
TGACTAGTGATCTCAAAGAT+GGG 0.615432 4_1:-50156676 None:intergenic
GGTATATACCTCAAGGAAAG+CGG 0.620389 4_1:-50162230 None:intergenic
GGAGCGTGCCGCTTTCCTTG+AGG 0.622922 4_1:+50162222 Msa0553220:CDS
ACTCATCACCAGCACTGATG+TGG 0.625166 4_1:+50158158 Msa0553220:CDS
AATAAAGAATATGTTTGATG+CGG 0.626923 4_1:-50162558 None:intergenic
GCACAGCTTACTAGGCGGGA+TGG 0.629272 4_1:+50161824 Msa0553220:CDS
ATGTTCTGGAACATAACCAT+AGG 0.629968 4_1:-50162082 None:intergenic
TTTCCTTAAGAAGCCAACTG+AGG 0.630085 4_1:+50159688 Msa0553220:CDS
CAATTGTGCAGTTGTACTGT+CGG 0.632558 4_1:+50157985 Msa0553220:CDS
GCTGAGAGTAATGTCACAAG+AGG 0.637155 4_1:-50158210 None:intergenic
TGTTTACTGCGAGTATAGCA+AGG 0.637897 4_1:-50155938 None:intergenic
CATAAATGCAGAGTTAGTTG+AGG 0.639011 4_1:+50156546 Msa0553220:CDS
CGATTCAAATGTCAATGTCG+GGG 0.642876 4_1:-50154360 None:intergenic
ACTCCTAAGAAGAGACTCGA+TGG 0.645293 4_1:-50162741 None:intergenic
GCGGGTAACAAATGCTTCAG+GGG 0.645661 4_1:-50160779 None:intergenic
ATTAAAAGTGGTACCCCTCG+AGG 0.646194 4_1:-50162632 None:intergenic
TGATTGCACATTTGACACCA+GGG 0.646294 4_1:-50162679 None:intergenic
TCTGGAACATAACCATAGGA+AGG 0.648359 4_1:-50162078 None:intergenic
TATGCAATATTAACCTGCAG+GGG 0.649782 4_1:-50161950 None:intergenic
CTGGATAATTGGTGAATATG+CGG 0.650182 4_1:+50159562 Msa0553220:CDS
TACATTCATTTAATGCAGTG+AGG 0.651493 4_1:-50156714 None:intergenic
CTCAGCTAAACTGCCTCGAG+GGG 0.652407 4_1:+50162619 Msa0553220:CDS
TCTCCTCTCAACTGACCCTG+AGG 0.655441 4_1:+50160349 Msa0553220:CDS
CGGGTAACAAATGCTTCAGG+GGG 0.655514 4_1:-50160778 None:intergenic
AAAACAACCAACAGCCTGTG+TGG 0.657599 4_1:+50162146 Msa0553220:CDS
AAGGGGATCACATAGATACT+CGG 0.661548 4_1:-50156312 None:intergenic
ATGTTCCAGAACATGTCCCA+AGG 0.663630 4_1:+50162091 Msa0553220:CDS
AGTTGAAGCAGGCAGTACAA+CGG 0.667803 4_1:-50161780 None:intergenic
TTCAAATGTCAATGTCGGGG+AGG 0.669748 4_1:-50154357 None:intergenic
TTCAGACCGAAATATAGACC+AGG 0.671852 4_1:+50158510 Msa0553220:CDS
AACAATGGGATGCATTCGTG+TGG 0.671970 4_1:+50156280 Msa0553220:CDS
GGACTAGCGCAGGTTCTTCG+GGG 0.672753 4_1:-50159634 None:intergenic
TGGTGGTGTTGACGCAACCG+TGG 0.673768 4_1:+50162526 Msa0553220:CDS
TGCAACCTGGAACATCAGCT+AGG 0.680770 4_1:+50162050 Msa0553220:CDS
CGTCAAGTAGAGAAGGATCG+AGG 0.683311 4_1:-50160711 None:intergenic
TTCTCAGCTAAACTGCCTCG+AGG 0.684212 4_1:+50162617 Msa0553220:CDS
GCAGAGTTAGTTGAGGACAG+GGG 0.685720 4_1:+50156553 Msa0553220:CDS
GAATCGAGCAGAAGGAAGGG+CGG 0.687176 4_1:+50154377 Msa0553220:five_prime_UTR
TTGTAGAAAGAGTTACCCCA+CGG 0.695569 4_1:+50157951 Msa0553220:CDS
TTTAATCGAACTTACCACAG+TGG 0.700455 4_1:+50162649 Msa0553220:CDS
ACCTGTAAAACTGAGCTAGG+CGG 0.713408 4_1:-50162115 None:intergenic
ATTGGCATGCTGTAACCGTG+GGG 0.715992 4_1:-50157966 None:intergenic
TCAGTGCACAGCTTACTAGG+CGG 0.719987 4_1:+50161819 Msa0553220:CDS
TTATCGTTGAAATACCACAC+AGG 0.723681 4_1:-50162160 None:intergenic
ACCAGGGTTTCCAACCACTG+TGG 0.743969 4_1:-50162663 None:intergenic
TGAATGTGTTGCAGACATGG+AGG 0.753034 4_1:+50162453 Msa0553220:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTATTTTATGTTTTTT+AGG + chr4_1:50155752-50155771 Msa0553220:intron 10.0%
!! CAAAAAAAATAAAAAAAATG+GGG - chr4_1:50158582-50158601 None:intergenic 10.0%
!! CACAAAAAAAATAAAAAAAA+TGG - chr4_1:50158584-50158603 None:intergenic 10.0%
!!! ATATTTAATATTTAATTTGC+CGG + chr4_1:50158966-50158985 Msa0553220:intron 10.0%
!!! TGATTTGTAATTTTTTTTAA+TGG + chr4_1:50162319-50162338 Msa0553220:intron 10.0%
!!! GATTTGTAATTTTTTTTAAT+GGG + chr4_1:50162320-50162339 Msa0553220:intron 10.0%
!! AATTATGAAAAAAGAGAAAA+CGG - chr4_1:50154525-50154544 None:intergenic 15.0%
!!! TATTTTACTTTTAGAAAAGA+TGG + chr4_1:50154900-50154919 Msa0553220:intron 15.0%
!! TAATATACAATAGAACTTTA+TGG + chr4_1:50155062-50155081 Msa0553220:intron 15.0%
!!! TAATTTTACAATTAGTGTTA+CGG + chr4_1:50155654-50155673 Msa0553220:intron 15.0%
!! AGTTATTCTAAACATAAATT+GGG - chr4_1:50156141-50156160 None:intergenic 15.0%
!! AAGTTATTCTAAACATAAAT+TGG - chr4_1:50156142-50156161 None:intergenic 15.0%
!!! CAAAATAACTTGATATTTTT+TGG - chr4_1:50157734-50157753 None:intergenic 15.0%
!!! TTTATCTAAAATTTATGAAC+AGG - chr4_1:50159833-50159852 None:intergenic 15.0%
!! TTTATGAAACAATATAAAGA+AGG - chr4_1:50160186-50160205 None:intergenic 15.0%
!!! TTTTATCTCTTTAAAGTATA+AGG + chr4_1:50160507-50160526 Msa0553220:intron 15.0%
!!! AATTGACATATTTCTAAAAT+TGG + chr4_1:50161432-50161451 Msa0553220:intron 15.0%
!!! ATTGACATATTTCTAAAATT+GGG + chr4_1:50161433-50161452 Msa0553220:intron 15.0%
!! AGTAATAACAAACAGTTTAA+AGG - chr4_1:50154728-50154747 None:intergenic 20.0%
!! TAGAAACGAAATTAAGAAAT+AGG - chr4_1:50154800-50154819 None:intergenic 20.0%
!! GAATATTTACATTATTATCG+TGG + chr4_1:50155149-50155168 Msa0553220:intron 20.0%
!! TTATAATAGAAATACGTGTT+TGG + chr4_1:50155207-50155226 Msa0553220:intron 20.0%
!! AAAATATACAGACAAAAGAA+TGG - chr4_1:50155991-50156010 None:intergenic 20.0%
!! TCAAACTAAAAAATAGACAT+GGG - chr4_1:50156382-50156401 None:intergenic 20.0%
!! ATCAAACTAAAAAATAGACA+TGG - chr4_1:50156383-50156402 None:intergenic 20.0%
!!! ATAAACACTGTTTTATTAGA+GGG - chr4_1:50156948-50156967 None:intergenic 20.0%
!!! AATAAACACTGTTTTATTAG+AGG - chr4_1:50156949-50156968 None:intergenic 20.0%
!! TCTAATAAAACAGTGTTTAT+TGG + chr4_1:50156948-50156967 Msa0553220:intron 20.0%
!! TAAATTGTCCTCATAATTAA+TGG - chr4_1:50157272-50157291 None:intergenic 20.0%
!! GTTATAATATTTCAAACAGT+GGG - chr4_1:50157487-50157506 None:intergenic 20.0%
!! ATTTGTCAATATTAATGCAT+CGG + chr4_1:50158059-50158078 Msa0553220:intron 20.0%
!! AAAAATAAAAAAAATGGGGA+GGG - chr4_1:50158578-50158597 None:intergenic 20.0%
!! AAAAAATAAAAAAAATGGGG+AGG - chr4_1:50158579-50158598 None:intergenic 20.0%
!! GTTATAGTTAGAATTAGTAA+GGG - chr4_1:50158868-50158887 None:intergenic 20.0%
!! AGTTATAGTTAGAATTAGTA+AGG - chr4_1:50158869-50158888 None:intergenic 20.0%
!! GTGTCAAATTAATAAAAGAA+AGG - chr4_1:50158920-50158939 None:intergenic 20.0%
!! CAAGATAAAAGTAAATTATG+TGG + chr4_1:50159220-50159239 Msa0553220:CDS 20.0%
!! AAGATTTGTAAAACCAATAA+TGG - chr4_1:50160029-50160048 None:intergenic 20.0%
!! TATAAACAAATAGATAGCAA+AGG - chr4_1:50160160-50160179 None:intergenic 20.0%
!!! TAAGTTGATAAATTCAGTTT+AGG - chr4_1:50160460-50160479 None:intergenic 20.0%
!!! TGAGTAAAATTAAGTATTGT+GGG + chr4_1:50161045-50161064 Msa0553220:intron 20.0%
!! ACAATATATTTCAAAAGTTG+CGG - chr4_1:50161223-50161242 None:intergenic 20.0%
!!! CTTTTGAAATATATTGTTCA+TGG + chr4_1:50161226-50161245 Msa0553220:intron 20.0%
!! AAAATTGACATTTCAAAAGT+TGG + chr4_1:50161300-50161319 Msa0553220:intron 20.0%
!! AAATTGACATTTCAAAAGTT+GGG + chr4_1:50161301-50161320 Msa0553220:intron 20.0%
!!! AATTTTTTATCCCTGAAATT+GGG - chr4_1:50161416-50161435 None:intergenic 20.0%
!!! TTGACATATTTCTAAAATTG+GGG + chr4_1:50161434-50161453 Msa0553220:intron 20.0%
!!! GGATTATTTCTATGTTATTA+AGG + chr4_1:50162341-50162360 Msa0553220:intron 20.0%
!! AATAAAGAATATGTTTGATG+CGG - chr4_1:50162561-50162580 None:intergenic 20.0%
!!! GTTTATACATTGTTTTTTGT+TGG + chr4_1:50162812-50162831 Msa0553220:three_prime_UTR 20.0%
!! TTCAAACTTAAACATCAATT+TGG - chr4_1:50162854-50162873 None:intergenic 20.0%
! AATTATCCAGATCAGAAATA+CGG - chr4_1:50154596-50154615 None:intergenic 25.0%
!! TATTTCTGATCTGGATAATT+AGG + chr4_1:50154596-50154615 Msa0553220:intron 25.0%
! ATCATCAACATTTGCATAAT+TGG - chr4_1:50154663-50154682 None:intergenic 25.0%
! CAATGTAATACTAAATTTCC+TGG - chr4_1:50154869-50154888 None:intergenic 25.0%
!!! TTTACTTTTAGAAAAGATGG+TGG + chr4_1:50154903-50154922 Msa0553220:intron 25.0%
!!! TTACTTTTAGAAAAGATGGT+GGG + chr4_1:50154904-50154923 Msa0553220:intron 25.0%
!!! ACTTTAATTTTCCATTGTCA+AGG + chr4_1:50155270-50155289 Msa0553220:intron 25.0%
!!! AATCCTATTTTGGTGAAATT+GGG + chr4_1:50155394-50155413 Msa0553220:intron 25.0%
!! AGTATTTGAAGTGTGATTTA+AGG + chr4_1:50155510-50155529 Msa0553220:intron 25.0%
!! ATCGAGATTTTACACAAAAT+CGG - chr4_1:50155710-50155729 None:intergenic 25.0%
! AAAGACATTGAATGAAAGTA+AGG - chr4_1:50156014-50156033 None:intergenic 25.0%
!!! ATTTCTTATTGTGTTGATTC+CGG + chr4_1:50156406-50156425 Msa0553220:intron 25.0%
! ATATATATCAAACACAAGCA+CGG - chr4_1:50156464-50156483 None:intergenic 25.0%
! TGTGTTTGATATATATTGAC+AGG + chr4_1:50156468-50156487 Msa0553220:intron 25.0%
!!! TAAACACTGTTTTATTAGAG+GGG - chr4_1:50156947-50156966 None:intergenic 25.0%
! AAACAGAAGATTTATTAGAG+GGG - chr4_1:50157052-50157071 None:intergenic 25.0%
! GAAACAGAAGATTTATTAGA+GGG - chr4_1:50157053-50157072 None:intergenic 25.0%
! AGAAACAGAAGATTTATTAG+AGG - chr4_1:50157054-50157073 None:intergenic 25.0%
! GGTTATAATATTTCAAACAG+TGG - chr4_1:50157488-50157507 None:intergenic 25.0%
! ATTGTCTTTCATTTGTATCA+TGG - chr4_1:50157509-50157528 None:intergenic 25.0%
!!! ATTTTAACTCTTGATCTTAG+AGG - chr4_1:50157538-50157557 None:intergenic 25.0%
! TCAAATTCTACAATCAACTA+TGG - chr4_1:50157563-50157582 None:intergenic 25.0%
! ATCATGAAAATCAGCTATTA+AGG - chr4_1:50157592-50157611 None:intergenic 25.0%
! CCAAAATATATTTCTCCAAA+GGG - chr4_1:50157624-50157643 None:intergenic 25.0%
! ACCAAAATATATTTCTCCAA+AGG - chr4_1:50157625-50157644 None:intergenic 25.0%
! GAAACAACATGTTAAAAGAT+GGG - chr4_1:50157826-50157845 None:intergenic 25.0%
! TGAAACAACATGTTAAAAGA+TGG - chr4_1:50157827-50157846 None:intergenic 25.0%
! AGATAATAAGTTACAGGTAA+GGG - chr4_1:50158031-50158050 None:intergenic 25.0%
! AAGATAATAAGTTACAGGTA+AGG - chr4_1:50158032-50158051 None:intergenic 25.0%
! GATGCATTAATATTGACAAA+TGG - chr4_1:50158060-50158079 None:intergenic 25.0%
! CTACATGTCATTATAAATTG+TGG - chr4_1:50158118-50158137 None:intergenic 25.0%
! AATAAGATTGATATTTCGCA+GGG - chr4_1:50158259-50158278 None:intergenic 25.0%
! TCAATCTTATTGTACAAAGA+AGG + chr4_1:50158268-50158287 Msa0553220:CDS 25.0%
! AATTCTTGCACATGAAATTA+AGG + chr4_1:50158296-50158315 Msa0553220:CDS 25.0%
! CACTTAGTTATAAACAAACT+AGG + chr4_1:50158349-50158368 Msa0553220:intron 25.0%
! TGATCCTATATATGTGAAAA+TGG + chr4_1:50158459-50158478 Msa0553220:CDS 25.0%
!! TTCTCCATTTTCACATATAT+AGG - chr4_1:50158466-50158485 None:intergenic 25.0%
! AATGATCAAAAAAAGAAGAG+AGG + chr4_1:50158724-50158743 Msa0553220:intron 25.0%
! TTTCATGAGAAAAATTGTTC+CGG - chr4_1:50158988-50159007 None:intergenic 25.0%
!! TCCTCATCTTTTCTTTTTTT+TGG + chr4_1:50159308-50159327 Msa0553220:intron 25.0%
!! CCTCATCTTTTCTTTTTTTT+GGG + chr4_1:50159309-50159328 Msa0553220:intron 25.0%
! ATTTGAACAAATGTGTTATG+AGG - chr4_1:50159740-50159759 None:intergenic 25.0%
! GATTTACATACTTAGTGAAA+GGG - chr4_1:50159905-50159924 None:intergenic 25.0%
! GGAACAATTCCTAAAATTAT+TGG + chr4_1:50160106-50160125 Msa0553220:intron 25.0%
!!! GTTTTGGTTCCAATAATTTT+AGG - chr4_1:50160118-50160137 None:intergenic 25.0%
!! GAAAATTTGTCTTTCAGTTT+TGG - chr4_1:50160134-50160153 None:intergenic 25.0%
! AATATGTAGCTAATTAGTTG+AGG + chr4_1:50160409-50160428 Msa0553220:intron 25.0%
!! GTGAGTAAAATTAAGTATTG+TGG + chr4_1:50161044-50161063 Msa0553220:intron 25.0%
! CAATATATTTCAAAAGTTGC+GGG - chr4_1:50161222-50161241 None:intergenic 25.0%
!!! AAAACACGTTACTTTTTAGT+TGG + chr4_1:50161329-50161348 Msa0553220:intron 25.0%
!!! AAACACGTTACTTTTTAGTT+GGG + chr4_1:50161330-50161349 Msa0553220:intron 25.0%
!!! CAATTTTTTATCCCTGAAAT+TGG - chr4_1:50161417-50161436 None:intergenic 25.0%
!!! TGACATATTTCTAAAATTGG+GGG + chr4_1:50161435-50161454 Msa0553220:intron 25.0%
!!! AACAAGTTTTGAGAATTTCT+AGG + chr4_1:50161492-50161511 Msa0553220:intron 25.0%
!!! ACAAGTTTTGAGAATTTCTA+GGG + chr4_1:50161493-50161512 Msa0553220:intron 25.0%
!! CAACAATTATATGTGTTGAT+AGG - chr4_1:50161672-50161691 None:intergenic 25.0%
! GCATTATTATGTAAATTGCA+AGG - chr4_1:50161718-50161737 None:intergenic 25.0%
! CAAATGTGTTCTTGTTAAAT+TGG - chr4_1:50161913-50161932 None:intergenic 25.0%
! CAATTTAACAAGAACACATT+TGG + chr4_1:50161911-50161930 Msa0553220:CDS 25.0%
! AATTCAGTTCTACTAATAGA+TGG + chr4_1:50162002-50162021 Msa0553220:intron 25.0%
! TCTATGTTATTAAGGACTAA+AGG + chr4_1:50162349-50162368 Msa0553220:intron 25.0%
! AGATAAATGTTGACATTTCA+GGG - chr4_1:50162715-50162734 None:intergenic 25.0%
! AAGATAAATGTTGACATTTC+AGG - chr4_1:50162716-50162735 None:intergenic 25.0%
ATGAGAGAAAAGTCCTAAAA+CGG - chr4_1:50154303-50154322 None:intergenic 30.0%
TGAAAAAAGAGAAAACGGAT+CGG - chr4_1:50154520-50154539 None:intergenic 30.0%
AAAGATGAAGGAAGTGAAAT+CGG - chr4_1:50154565-50154584 None:intergenic 30.0%
CAACATTTGCATAATTGGTT+CGG - chr4_1:50154658-50154677 None:intergenic 30.0%
TATTCTATCAGTTAGATTCC+AGG + chr4_1:50154848-50154867 Msa0553220:intron 30.0%
!! TACTTTTAGAAAAGATGGTG+GGG + chr4_1:50154905-50154924 Msa0553220:intron 30.0%
! TTTCTCCTACAGTTTTTCTA+CGG - chr4_1:50155000-50155019 None:intergenic 30.0%
GTATCTAGAGATTAATGAGT+TGG + chr4_1:50155030-50155049 Msa0553220:intron 30.0%
! GTATACACTGAATCCTATTT+TGG + chr4_1:50155384-50155403 Msa0553220:intron 30.0%
!!! GAATCCTATTTTGGTGAAAT+TGG + chr4_1:50155393-50155412 Msa0553220:intron 30.0%
ACAATTCAACGATCAACAAA+GGG - chr4_1:50155428-50155447 None:intergenic 30.0%
TACAATTCAACGATCAACAA+AGG - chr4_1:50155429-50155448 None:intergenic 30.0%
! ATTTTACACAAAATCGGGAA+GGG - chr4_1:50155704-50155723 None:intergenic 30.0%
! TCGAGATTTTACACAAAATC+GGG - chr4_1:50155709-50155728 None:intergenic 30.0%
ATAAATAGAAGTTAGACTCG+AGG - chr4_1:50155740-50155759 None:intergenic 30.0%
TTGCATGCAAACAGAAAATT+TGG + chr4_1:50155860-50155879 Msa0553220:CDS 30.0%
! AAATTTGGAGCTGAAAAAGT+TGG + chr4_1:50155875-50155894 Msa0553220:CDS 30.0%
!! CTTTGCTATTGCTAATTTCT+TGG + chr4_1:50156056-50156075 Msa0553220:intron 30.0%
! TGCTAATTTCTTGGATTTTG+AGG + chr4_1:50156065-50156084 Msa0553220:intron 30.0%
AACAACCATTGGATTATTGT+CGG - chr4_1:50156608-50156627 None:intergenic 30.0%
TACATTCATTTAATGCAGTG+AGG - chr4_1:50156717-50156736 None:intergenic 30.0%
TAGAAGAAAACAGTGTTCAT+TGG + chr4_1:50156841-50156860 Msa0553220:intron 30.0%
AACTAAGTCACTCAAATACT+TGG - chr4_1:50156885-50156904 None:intergenic 30.0%
TTAAACCTCTATTACATTCC+AGG + chr4_1:50156971-50156990 Msa0553220:intron 30.0%
AAATACCTGGAATGTAATAG+AGG - chr4_1:50156979-50156998 None:intergenic 30.0%
AGTTGAATAGTTAGTTGGTT+AGG - chr4_1:50157105-50157124 None:intergenic 30.0%
TTATAAATGCACGGTAAAGA+CGG - chr4_1:50157235-50157254 None:intergenic 30.0%
TGGTCATTGTTATAAATGCA+CGG - chr4_1:50157244-50157263 None:intergenic 30.0%
CCTCATAATTAATGGAGTAT+TGG - chr4_1:50157264-50157283 None:intergenic 30.0%
CCAATACTCCATTAATTATG+AGG + chr4_1:50157261-50157280 Msa0553220:intron 30.0%
!! TTCAAATTGAGTGTCGTTTA+AGG - chr4_1:50157351-50157370 None:intergenic 30.0%
AAACGACACTCAATTTGAAA+TGG + chr4_1:50157352-50157371 Msa0553220:intron 30.0%
TTTAGGGAGAGAATATTGTA+AGG - chr4_1:50157403-50157422 None:intergenic 30.0%
CTTAAAACAAAACCCTGTTA+GGG + chr4_1:50157460-50157479 Msa0553220:intron 30.0%
!! CCCTTTGGAGAAATATATTT+TGG + chr4_1:50157621-50157640 Msa0553220:intron 30.0%
TCTGCAAGATAATAAGTTAC+AGG - chr4_1:50158037-50158056 None:intergenic 30.0%
CAATAAGATTGATATTTCGC+AGG - chr4_1:50158260-50158279 None:intergenic 30.0%
ATTTCATGTGCAAGAATTGT+CGG - chr4_1:50158294-50158313 None:intergenic 30.0%
TTATAAACAAACTAGGTCAC+CGG + chr4_1:50158356-50158375 Msa0553220:intron 30.0%
AATAAAAGAGGCTCATAATC+CGG - chr4_1:50158378-50158397 None:intergenic 30.0%
! TTTGGCGTCTAAAATAAAAG+AGG - chr4_1:50158390-50158409 None:intergenic 30.0%
! TTTTAGACGCCAAATGATTA+TGG + chr4_1:50158396-50158415 Msa0553220:intron 30.0%
TTTAGACGCCAAATGATTAT+GGG + chr4_1:50158397-50158416 Msa0553220:intron 30.0%
GTATAATGTAAAAGCTTACC+TGG - chr4_1:50158531-50158550 None:intergenic 30.0%
CTACACACTATGAAATGAAT+TGG + chr4_1:50158658-50158677 Msa0553220:intron 30.0%
CTGTTAGGATAATGAATAAG+GGG - chr4_1:50158892-50158911 None:intergenic 30.0%
CCTGTTAGGATAATGAATAA+GGG - chr4_1:50158893-50158912 None:intergenic 30.0%
TAACCAATGGGTCAAAAAAA+AGG - chr4_1:50159051-50159070 None:intergenic 30.0%
! TGACGTAGATTTTGTTAGAA+AGG + chr4_1:50159118-50159137 Msa0553220:CDS 30.0%
AGTAAATTATGTGGTTCAAG+AGG + chr4_1:50159229-50159248 Msa0553220:CDS 30.0%
AAAGAAAACAATACGTGTTG+GGG - chr4_1:50159289-50159308 None:intergenic 30.0%
GAAAGAAAACAATACGTGTT+GGG - chr4_1:50159290-50159309 None:intergenic 30.0%
CCCAAAAAAAAGAAAAGATG+AGG - chr4_1:50159312-50159331 None:intergenic 30.0%
!!! CATCTTTTCTTTTTTTTGGG+AGG + chr4_1:50159312-50159331 Msa0553220:intron 30.0%
!!! TTTTCTTTTTTTTGGGAGGT+GGG + chr4_1:50159316-50159335 Msa0553220:intron 30.0%
AATTTATGAACAGGATTCTG+AGG - chr4_1:50159824-50159843 None:intergenic 30.0%
! TTTTTCTACCGAAATCTAGT+AGG + chr4_1:50159875-50159894 Msa0553220:intron 30.0%
GGATTTACATACTTAGTGAA+AGG - chr4_1:50159906-50159925 None:intergenic 30.0%
! GATATAAGCTCAAATTTGCT+AGG - chr4_1:50160085-50160104 None:intergenic 30.0%
AGCAAATTTGAGCTTATATC+TGG + chr4_1:50160085-50160104 Msa0553220:intron 30.0%
AACAAATAGATAGCAAAGGA+CGG - chr4_1:50160156-50160175 None:intergenic 30.0%
ATTCAAGAAATCAAACCTCA+GGG - chr4_1:50160367-50160386 None:intergenic 30.0%
AATTCAAGAAATCAAACCTC+AGG - chr4_1:50160368-50160387 None:intergenic 30.0%
ACATATTGAACTGAAGAAAC+TGG - chr4_1:50160396-50160415 None:intergenic 30.0%
!! AGAAAGTTGTTATTTCCATG+TGG - chr4_1:50160568-50160587 None:intergenic 30.0%
ATCAAATCACCAAGTAAATC+TGG - chr4_1:50160970-50160989 None:intergenic 30.0%
! AGATTTACTTGGTGATTTGA+TGG + chr4_1:50160969-50160988 Msa0553220:CDS 30.0%
! GATTTACTTGGTGATTTGAT+GGG + chr4_1:50160970-50160989 Msa0553220:CDS 30.0%
! ATTGTGGGTTACTTGTAAAA+TGG + chr4_1:50161060-50161079 Msa0553220:intron 30.0%
CATGCGATAAAAAAAGAGAA+TGG + chr4_1:50161130-50161149 Msa0553220:intron 30.0%
!!! TGTTTTTTTAGTCCCAAACT+TGG + chr4_1:50161160-50161179 Msa0553220:intron 30.0%
TAAGTCCCTCATTGAAAAAT+TGG + chr4_1:50161185-50161204 Msa0553220:intron 30.0%
!! AGACACCAATTTTTCAATGA+GGG - chr4_1:50161193-50161212 None:intergenic 30.0%
!! AAGACACCAATTTTTCAATG+AGG - chr4_1:50161194-50161213 None:intergenic 30.0%
TATTGTTCATGGTCTTTGTA+TGG + chr4_1:50161237-50161256 Msa0553220:intron 30.0%
!!! AACACGTTACTTTTTAGTTG+GGG + chr4_1:50161331-50161350 Msa0553220:intron 30.0%
!!! GAAAACACGTTACTTTTCAA+AGG + chr4_1:50161460-50161479 Msa0553220:intron 30.0%
!!! CAAGTTTTGAGAATTTCTAG+GGG + chr4_1:50161494-50161513 Msa0553220:intron 30.0%
AAAACATGTTCACATGACTT+TGG + chr4_1:50161641-50161660 Msa0553220:intron 30.0%
AAACATGTTCACATGACTTT+GGG + chr4_1:50161642-50161661 Msa0553220:intron 30.0%
CAGGTTAATATTGCATACAA+TGG + chr4_1:50161956-50161975 Msa0553220:intron 30.0%
AAGAGATCAAATGAATGGAA+AGG - chr4_1:50162254-50162273 None:intergenic 30.0%
GTGAAAAGAGATCAAATGAA+TGG - chr4_1:50162259-50162278 None:intergenic 30.0%
TCACTGCAATAACATTAATG+CGG + chr4_1:50162275-50162294 Msa0553220:intron 30.0%
CAAGTATAAGTCATGAAAAG+TGG - chr4_1:50162408-50162427 None:intergenic 30.0%
! CACTTTTCATGACTTATACT+TGG + chr4_1:50162406-50162425 Msa0553220:intron 30.0%
AACTTCATTTGAATCAGGAA+GGG - chr4_1:50162480-50162499 None:intergenic 30.0%
AAACTTCATTTGAATCAGGA+AGG - chr4_1:50162481-50162500 None:intergenic 30.0%
TTGGAAACTTCATTTGAATC+AGG - chr4_1:50162485-50162504 None:intergenic 30.0%
TGATTCAAATGAAGTTTCCA+AGG + chr4_1:50162484-50162503 Msa0553220:CDS 30.0%
!! CATATATAACTGTGGTTTTG+TGG + chr4_1:50162892-50162911 Msa0553220:three_prime_UTR 30.0%
TCGATTCAAATGTCAATGTC+GGG - chr4_1:50154364-50154383 None:intergenic 35.0%
CTCGATTCAAATGTCAATGT+CGG - chr4_1:50154365-50154384 None:intergenic 35.0%
! TAAGCTCTTCTTTGAGTTCA+GGG - chr4_1:50154460-50154479 None:intergenic 35.0%
! TTAAGCTCTTCTTTGAGTTC+AGG - chr4_1:50154461-50154480 None:intergenic 35.0%
AGAGCTTAATTCTCAGTACA+AGG + chr4_1:50154472-50154491 Msa0553220:CDS 35.0%
GAAAAAAGAGAAAACGGATC+GGG - chr4_1:50154519-50154538 None:intergenic 35.0%
AAATCGGATGGATCTAGAAA+TGG - chr4_1:50154549-50154568 None:intergenic 35.0%
ACGGATGTAGAAAAAGATGA+AGG - chr4_1:50154577-50154596 None:intergenic 35.0%
AATTAGGTGTTTACGATTCG+TGG + chr4_1:50154612-50154631 Msa0553220:intron 35.0%
! CTAGAGATTAATGAGTTGGA+TGG + chr4_1:50155034-50155053 Msa0553220:intron 35.0%
TTACACACAATCCTTGACAA+TGG - chr4_1:50155284-50155303 None:intergenic 35.0%
ATTGTCAAGGATTGTGTGTA+AGG + chr4_1:50155283-50155302 Msa0553220:intron 35.0%
! CATAGAGTCTCAAGATTTTG+TGG + chr4_1:50155336-50155355 Msa0553220:intron 35.0%
TGTATACTCTTAATCGCTGA+GGG - chr4_1:50155371-50155390 None:intergenic 35.0%
! TTTTACACAAAATCGGGAAG+GGG - chr4_1:50155703-50155722 None:intergenic 35.0%
! GATTTTACACAAAATCGGGA+AGG - chr4_1:50155705-50155724 None:intergenic 35.0%
AAAAGTGATTGCTGCTATGA+CGG + chr4_1:50155797-50155816 Msa0553220:CDS 35.0%
CGCAGTAAACACATTTGTAA+AGG + chr4_1:50155950-50155969 Msa0553220:CDS 35.0%
! ATAAATTGGGAGCACAAGAT+GGG - chr4_1:50156128-50156147 None:intergenic 35.0%
! CATTTTATGAAATGCTGCTC+AGG + chr4_1:50156214-50156233 Msa0553220:intron 35.0%
AAGGCACGAATTAAAGGATT+TGG - chr4_1:50156251-50156270 None:intergenic 35.0%
! ACCTTTAGACATCTTTGAAG+GGG - chr4_1:50156332-50156351 None:intergenic 35.0%
CACCTTTAGACATCTTTGAA+GGG - chr4_1:50156333-50156352 None:intergenic 35.0%
ATACAGCTTTGCAACACAAA+TGG - chr4_1:50156524-50156543 None:intergenic 35.0%
CATAAATGCAGAGTTAGTTG+AGG + chr4_1:50156546-50156565 Msa0553220:CDS 35.0%
GATATCCGACAATAATCCAA+TGG + chr4_1:50156600-50156619 Msa0553220:CDS 35.0%
TGACTAGTGATCTCAAAGAT+GGG - chr4_1:50156679-50156698 None:intergenic 35.0%
ATGACTAGTGATCTCAAAGA+TGG - chr4_1:50156680-50156699 None:intergenic 35.0%
!! AATTTTGGAGAGGATCTAAG+AGG - chr4_1:50157021-50157040 None:intergenic 35.0%
!! GGACACAATTAATTTTGGAG+AGG - chr4_1:50157031-50157050 None:intergenic 35.0%
! AGAGGGGACACAATTAATTT+TGG - chr4_1:50157036-50157055 None:intergenic 35.0%
AGCGACAGTCAATATGAAAT+GGG - chr4_1:50157134-50157153 None:intergenic 35.0%
TATAAATGCACGGTAAAGAC+GGG - chr4_1:50157234-50157253 None:intergenic 35.0%
GCAACAAAAGACTTGATAAG+TGG - chr4_1:50157306-50157325 None:intergenic 35.0%
!!! GTTGCTTTTCTTAAACCTTG+TGG + chr4_1:50157321-50157340 Msa0553220:intron 35.0%
! GACACTCAATTTGAAATGGA+TGG + chr4_1:50157356-50157375 Msa0553220:intron 35.0%
ATGGATGGTGTATCTAACAA+AGG + chr4_1:50157371-50157390 Msa0553220:intron 35.0%
TGGATGGTGTATCTAACAAA+GGG + chr4_1:50157372-50157391 Msa0553220:intron 35.0%
GCTTAAAACAAAACCCTGTT+AGG + chr4_1:50157459-50157478 Msa0553220:intron 35.0%
!! CATGATGATTTTGATCCCTT+TGG + chr4_1:50157606-50157625 Msa0553220:intron 35.0%
TACAATACTGCACAATCAAC+TGG - chr4_1:50157758-50157777 None:intergenic 35.0%
AACATGTTAAAAGATGGGCA+AGG - chr4_1:50157821-50157840 None:intergenic 35.0%
TCAGTCAATCTAACACAACT+TGG + chr4_1:50157844-50157863 Msa0553220:intron 35.0%
TATAAAAACTTGACCCCATC+TGG - chr4_1:50157879-50157898 None:intergenic 35.0%
! ATGGGGTCAAGTTTTTATAC+TGG + chr4_1:50157880-50157899 Msa0553220:CDS 35.0%
GTAGATGATCCTTCAACAAA+TGG + chr4_1:50158134-50158153 Msa0553220:intron 35.0%
! TGATGAGTTCCATTTGTTGA+AGG - chr4_1:50158146-50158165 None:intergenic 35.0%
! CCATCTTTTTGCAAAGATTC+CGG - chr4_1:50158185-50158204 None:intergenic 35.0%
AGCTTACCTGGTCTATATTT+CGG - chr4_1:50158519-50158538 None:intergenic 35.0%
ATAAAAAAAATGGGGAGGGA+AGG - chr4_1:50158574-50158593 None:intergenic 35.0%
GTAGTGTTCACTAAAATCAC+TGG - chr4_1:50158642-50158661 None:intergenic 35.0%
ATGCAGAAATCCTTTGTGAA+AGG - chr4_1:50158767-50158786 None:intergenic 35.0%
CCCTTATTCATTATCCTAAC+AGG + chr4_1:50158890-50158909 Msa0553220:intron 35.0%
GCCTGTTAGGATAATGAATA+AGG - chr4_1:50158894-50158913 None:intergenic 35.0%
!!! TCACCTTTTTTTTGACCCAT+TGG + chr4_1:50159045-50159064 Msa0553220:intron 35.0%
!!! GCAGGTTTTGTTGGAATTTA+AGG + chr4_1:50159079-50159098 Msa0553220:intron 35.0%
AGCTGCTCTCTCTAATTTAA+TGG - chr4_1:50159168-50159187 None:intergenic 35.0%
GGAAAGAAAACAATACGTGT+TGG - chr4_1:50159291-50159310 None:intergenic 35.0%
!!! CTTTTCTTTTTTTTGGGAGG+TGG + chr4_1:50159315-50159334 Msa0553220:intron 35.0%
!!! TTTCTTTTTTTTGGGAGGTG+GGG + chr4_1:50159317-50159336 Msa0553220:intron 35.0%
CTCACAAAGAGTTGCAATTA+TGG - chr4_1:50159415-50159434 None:intergenic 35.0%
AAAACATATACCTTGGCTTC+GGG - chr4_1:50159459-50159478 None:intergenic 35.0%
GAAAACATATACCTTGGCTT+CGG - chr4_1:50159460-50159479 None:intergenic 35.0%
CACTCAGAAAACATATACCT+TGG - chr4_1:50159466-50159485 None:intergenic 35.0%
AGATAGGAAAGTGGATGAAA+AGG - chr4_1:50159525-50159544 None:intergenic 35.0%
! TTTTCATCCACTTTCCTATC+TGG + chr4_1:50159524-50159543 Msa0553220:intron 35.0%
GCATCAATGATCTGGATAAT+TGG + chr4_1:50159551-50159570 Msa0553220:CDS 35.0%
CTGGATAATTGGTGAATATG+CGG + chr4_1:50159562-50159581 Msa0553220:CDS 35.0%
GAACAAATGTGTTATGAGGA+AGG - chr4_1:50159736-50159755 None:intergenic 35.0%
ATAGACCACTTGAAGAAAGA+GGG - chr4_1:50159941-50159960 None:intergenic 35.0%
TATAGACCACTTGAAGAAAG+AGG - chr4_1:50159942-50159961 None:intergenic 35.0%
TAGAGTGAAACTAACATCGA+AGG - chr4_1:50160244-50160263 None:intergenic 35.0%
TCACTCTAGCTAATCTTTAC+AGG + chr4_1:50160256-50160275 Msa0553220:intron 35.0%
!! TGTTTTGAACAATGCGACTA+TGG + chr4_1:50160280-50160299 Msa0553220:CDS 35.0%
GAGATCGTGCATACATATAT+TGG + chr4_1:50160324-50160343 Msa0553220:CDS 35.0%
ATGTAGCTAATTAGTTGAGG+TGG + chr4_1:50160412-50160431 Msa0553220:intron 35.0%
TTTGAGTCATCAGTTATCAC+AGG - chr4_1:50160688-50160707 None:intergenic 35.0%
! GTCATCATCTTCAGTTTTCT+GGG - chr4_1:50160818-50160837 None:intergenic 35.0%
! AGTCATCATCTTCAGTTTTC+TGG - chr4_1:50160819-50160838 None:intergenic 35.0%
TCATCTGTAAATCCTGCTAA+TGG + chr4_1:50160862-50160881 Msa0553220:CDS 35.0%
! CTTAATTTTACTCACCCTGA+AGG - chr4_1:50161039-50161058 None:intergenic 35.0%
TCCTTGTGGTAGAAATCAAA+GGG + chr4_1:50161374-50161393 Msa0553220:intron 35.0%
AATTCTCAAGTTCCACTTGA+TGG + chr4_1:50161878-50161897 Msa0553220:CDS 35.0%
TATGCAATATTAACCTGCAG+GGG - chr4_1:50161953-50161972 None:intergenic 35.0%
GTATGCAATATTAACCTGCA+GGG - chr4_1:50161954-50161973 None:intergenic 35.0%
TGTATGCAATATTAACCTGC+AGG - chr4_1:50161955-50161974 None:intergenic 35.0%
!! TAGATGGCTTATTGCTTTTC+AGG + chr4_1:50162018-50162037 Msa0553220:intron 35.0%
!! ATGTTCTGGAACATAACCAT+AGG - chr4_1:50162085-50162104 None:intergenic 35.0%
!!! AGGCTGTTGGTTGTTTTTTA+AGG - chr4_1:50162143-50162162 None:intergenic 35.0%
TTATCGTTGAAATACCACAC+AGG - chr4_1:50162163-50162182 None:intergenic 35.0%
!!! ATTCCAAGCATTTTTTACCG+AGG + chr4_1:50162189-50162208 Msa0553220:CDS 35.0%
! ATGGAAAGGTATATACCTCA+AGG - chr4_1:50162240-50162259 None:intergenic 35.0%
CTGCAACACATTCAATGATA+AGG - chr4_1:50162447-50162466 None:intergenic 35.0%
GTGGTAAGTTCGATTAAAAG+TGG - chr4_1:50162647-50162666 None:intergenic 35.0%
TTTAATCGAACTTACCACAG+TGG + chr4_1:50162649-50162668 Msa0553220:CDS 35.0%
CACTGTTGCATATATAACTG+TGG + chr4_1:50162884-50162903 Msa0553220:three_prime_UTR 35.0%
CGATTCAAATGTCAATGTCG+GGG - chr4_1:50154363-50154382 None:intergenic 40.0%
TGACATTTGAATCGAGCAGA+AGG + chr4_1:50154369-50154388 Msa0553220:five_prime_UTR 40.0%
ATTTGAATCGAGCAGAAGGA+AGG + chr4_1:50154373-50154392 Msa0553220:five_prime_UTR 40.0%
TTTGAATCGAGCAGAAGGAA+GGG + chr4_1:50154374-50154393 Msa0553220:five_prime_UTR 40.0%
TACTTCTCCACAACGAAGAA+GGG + chr4_1:50154428-50154447 Msa0553220:CDS 40.0%
ATGAAGGAAGTGAAATCGGA+TGG - chr4_1:50154561-50154580 None:intergenic 40.0%
! CTACATCCGTATTTCTGATC+TGG + chr4_1:50154587-50154606 Msa0553220:intron 40.0%
!! TTTAGAAAAGATGGTGGGGT+AGG + chr4_1:50154909-50154928 Msa0553220:intron 40.0%
GAGAGTAGAGTAGATCAGAT+GGG + chr4_1:50154944-50154963 Msa0553220:intron 40.0%
TGATGCCGTAGAAAAACTGT+AGG + chr4_1:50154992-50155011 Msa0553220:intron 40.0%
GTGTATACTCTTAATCGCTG+AGG - chr4_1:50155372-50155391 None:intergenic 40.0%
CCACCCAATTTCACCAAAAT+AGG - chr4_1:50155400-50155419 None:intergenic 40.0%
!!! CCTATTTTGGTGAAATTGGG+TGG + chr4_1:50155397-50155416 Msa0553220:intron 40.0%
AAATTATGCAAAGAGCCAGC+CGG + chr4_1:50155914-50155933 Msa0553220:CDS 40.0%
TGTTTACTGCGAGTATAGCA+AGG - chr4_1:50155941-50155960 None:intergenic 40.0%
! TAAATTGGGAGCACAAGATG+GGG - chr4_1:50156127-50156146 None:intergenic 40.0%
! CATAAATTGGGAGCACAAGA+TGG - chr4_1:50156129-50156148 None:intergenic 40.0%
AACTGCCATGAGTAAGAGTT+GGG - chr4_1:50156172-50156191 None:intergenic 40.0%
ACAGCTAAGGCACGAATTAA+AGG - chr4_1:50156257-50156276 None:intergenic 40.0%
AAGGGGATCACATAGATACT+CGG - chr4_1:50156315-50156334 None:intergenic 40.0%
TCCCCTTCAAAGATGTCTAA+AGG + chr4_1:50156328-50156347 Msa0553220:CDS 40.0%
GCACCTTTAGACATCTTTGA+AGG - chr4_1:50156334-50156353 None:intergenic 40.0%
ATTCCGGTGACATTCGTATT+TGG + chr4_1:50156422-50156441 Msa0553220:intron 40.0%
AGTCCAAATACGAATGTCAC+CGG - chr4_1:50156428-50156447 None:intergenic 40.0%
!!! GGGTTTTTTGGAATCACTGA+AGG + chr4_1:50156573-50156592 Msa0553220:CDS 40.0%
ACAGCATTAGCAACAACCAT+TGG - chr4_1:50156619-50156638 None:intergenic 40.0%
TATAGTGCAACTCCTCTGAT+AGG + chr4_1:50156803-50156822 Msa0553220:intron 40.0%
! TCTGAAACAGTACCTATCAG+AGG - chr4_1:50156818-50156837 None:intergenic 40.0%
!! TTTTGGAGAGGATCTTAGAG+CGG - chr4_1:50156914-50156933 None:intergenic 40.0%
!!! GGACATCATTAGTTTTGGAG+AGG - chr4_1:50156926-50156945 None:intergenic 40.0%
!! AGAGGGGACATCATTAGTTT+TGG - chr4_1:50156931-50156950 None:intergenic 40.0%
GGAGCAGTTGAATAGTTAGT+TGG - chr4_1:50157110-50157129 None:intergenic 40.0%
GACAGTCAATATGAAATGGG+GGG - chr4_1:50157131-50157150 None:intergenic 40.0%
CGACAGTCAATATGAAATGG+GGG - chr4_1:50157132-50157151 None:intergenic 40.0%
GCGACAGTCAATATGAAATG+GGG - chr4_1:50157133-50157152 None:intergenic 40.0%
GAGCGACAGTCAATATGAAA+TGG - chr4_1:50157135-50157154 None:intergenic 40.0%
!! GTCGTTTAAGGTTTTCCACA+AGG - chr4_1:50157339-50157358 None:intergenic 40.0%
GAGGACAAGGTGAATGTTTA+GGG - chr4_1:50157419-50157438 None:intergenic 40.0%
TGAGGACAAGGTGAATGTTT+AGG - chr4_1:50157420-50157439 None:intergenic 40.0%
AACTCTTGATCTTAGAGGCA+GGG - chr4_1:50157533-50157552 None:intergenic 40.0%
TAACTCTTGATCTTAGAGGC+AGG - chr4_1:50157534-50157553 None:intergenic 40.0%
ACTTGGTTTCACTTACCAGA+TGG + chr4_1:50157861-50157880 Msa0553220:intron 40.0%
CTTGGTTTCACTTACCAGAT+GGG + chr4_1:50157862-50157881 Msa0553220:intron 40.0%
TTGGTTTCACTTACCAGATG+GGG + chr4_1:50157863-50157882 Msa0553220:intron 40.0%
TTGTAGAAAGAGTTACCCCA+CGG + chr4_1:50157951-50157970 Msa0553220:CDS 40.0%
CAATTGTGCAGTTGTACTGT+CGG + chr4_1:50157985-50158004 Msa0553220:CDS 40.0%
ATCACTAATCACATTCTGCC+TGG + chr4_1:50158084-50158103 Msa0553220:intron 40.0%
TAAATTGTGGTTAGCACACC+AGG - chr4_1:50158105-50158124 None:intergenic 40.0%
CCGGAATCTTTGCAAAAAGA+TGG + chr4_1:50158182-50158201 Msa0553220:CDS 40.0%
AGGGCAACATATTGTATCTC+AGG - chr4_1:50158240-50158259 None:intergenic 40.0%
AGAACACCTACAGATAGAAC+AGG - chr4_1:50158426-50158445 None:intergenic 40.0%
TTCAGACCGAAATATAGACC+AGG + chr4_1:50158510-50158529 Msa0553220:CDS 40.0%
TTGTGAAAGGAAACCCTTGT+TGG - chr4_1:50158754-50158773 None:intergenic 40.0%
ACAAGGGTTTCCTTTCACAA+AGG + chr4_1:50158754-50158773 Msa0553220:intron 40.0%
TAAGGGAACTTCGCTAGATA+GGG - chr4_1:50158851-50158870 None:intergenic 40.0%
AAAAGAAAGGTGAGCCTGTT+AGG - chr4_1:50158907-50158926 None:intergenic 40.0%
! TGACCCATTGGTTACAACAT+TGG + chr4_1:50159057-50159076 Msa0553220:intron 40.0%
CTGCCAATGTTGTAACCAAT+GGG - chr4_1:50159063-50159082 None:intergenic 40.0%
!! ACAACATTGGCAGGTTTTGT+TGG + chr4_1:50159070-50159089 Msa0553220:intron 40.0%
!!! TTCTTTTTTTTGGGAGGTGG+GGG + chr4_1:50159318-50159337 Msa0553220:intron 40.0%
CGAGCTTCTTGAAAGTTTCT+TGG + chr4_1:50159604-50159623 Msa0553220:CDS 40.0%
TAGCTGTCAGCAATTGTAGT+TGG - chr4_1:50159658-50159677 None:intergenic 40.0%
TTTCCTTAAGAAGCCAACTG+AGG + chr4_1:50159688-50159707 Msa0553220:CDS 40.0%
TTCCTTAAGAAGCCAACTGA+GGG + chr4_1:50159689-50159708 Msa0553220:CDS 40.0%
AGGGTTGTCCTACTAGATTT+CGG - chr4_1:50159886-50159905 None:intergenic 40.0%
AATTAGTTGAGGTGGATACC+TGG + chr4_1:50160420-50160439 Msa0553220:intron 40.0%
TAGGTATACAATCTACAGCC+AGG - chr4_1:50160441-50160460 None:intergenic 40.0%
TGATCATTTGTCTAGCCACA+TGG + chr4_1:50160550-50160569 Msa0553220:intron 40.0%
GACAAGCTAGGTACATCAAA+GGG - chr4_1:50160627-50160646 None:intergenic 40.0%
AGACAAGCTAGGTACATCAA+AGG - chr4_1:50160628-50160647 None:intergenic 40.0%
GAAGATGATGACTATCCTGA+TGG + chr4_1:50160826-50160845 Msa0553220:CDS 40.0%
AGCAGGATTTACAGATGACT+CGG - chr4_1:50160860-50160879 None:intergenic 40.0%
ATTGTATAGCTGGAAGTAGG+AGG - chr4_1:50160898-50160917 None:intergenic 40.0%
GGTATTGTATAGCTGGAAGT+AGG - chr4_1:50160901-50160920 None:intergenic 40.0%
! AGATGCAGGTATTGTATAGC+TGG - chr4_1:50160908-50160927 None:intergenic 40.0%
CTATACAATACCTGCATCTG+TGG + chr4_1:50160909-50160928 Msa0553220:CDS 40.0%
GAGGGACTTAAACCAAGTTT+GGG - chr4_1:50161175-50161194 None:intergenic 40.0%
TGAGGGACTTAAACCAAGTT+TGG - chr4_1:50161176-50161195 None:intergenic 40.0%
TGGTCTTTGTATGGCGTTAA+AGG + chr4_1:50161246-50161265 Msa0553220:intron 40.0%
GGTCTTTGTATGGCGTTAAA+GGG + chr4_1:50161247-50161266 Msa0553220:intron 40.0%
GTCTTTGTATGGCGTTAAAG+GGG + chr4_1:50161248-50161267 Msa0553220:intron 40.0%
GGGACTAAAACACAACTTCA+GGG + chr4_1:50161274-50161293 Msa0553220:intron 40.0%
!!! ACGTTACTTTTTAGTTGGGG+AGG + chr4_1:50161334-50161353 Msa0553220:intron 40.0%
!!! CGTTACTTTTTAGTTGGGGA+GGG + chr4_1:50161335-50161354 Msa0553220:intron 40.0%
!!! GTTACTTTTTAGTTGGGGAG+GGG + chr4_1:50161336-50161355 Msa0553220:intron 40.0%
!!! TTACTTTTTAGTTGGGGAGG+GGG + chr4_1:50161337-50161356 Msa0553220:intron 40.0%
GTCCTTGTGGTAGAAATCAA+AGG + chr4_1:50161373-50161392 Msa0553220:intron 40.0%
CCTTGTGGTAGAAATCAAAG+GGG + chr4_1:50161375-50161394 Msa0553220:intron 40.0%
! GGTACTGAAACCCAATTTCA+GGG + chr4_1:50161403-50161422 Msa0553220:intron 40.0%
! ATGTTCACATGACTTTGGGA+TGG + chr4_1:50161646-50161665 Msa0553220:intron 40.0%
AAATCAGTGCACAGCTTACT+AGG + chr4_1:50161816-50161835 Msa0553220:CDS 40.0%
TGGATCATGAATCCATCAAG+TGG - chr4_1:50161893-50161912 None:intergenic 40.0%
! TCTGGAACATAACCATAGGA+AGG - chr4_1:50162081-50162100 None:intergenic 40.0%
CATCCTCGGTAAAAAATGCT+TGG - chr4_1:50162195-50162214 None:intergenic 40.0%
!!! CAAGCATTTTTTACCGAGGA+TGG + chr4_1:50162193-50162212 Msa0553220:CDS 40.0%
! TTTTACCGAGGATGGTAGAA+TGG + chr4_1:50162201-50162220 Msa0553220:CDS 40.0%
GGTATATACCTCAAGGAAAG+CGG - chr4_1:50162233-50162252 None:intergenic 40.0%
CATTGAATGTGTTGCAGACA+TGG + chr4_1:50162450-50162469 Msa0553220:intron 40.0%
GACTTCCCTGCAATTGTAAT+TGG + chr4_1:50162506-50162525 Msa0553220:CDS 40.0%
TTCCCTGCAATTGTAATTGG+TGG + chr4_1:50162509-50162528 Msa0553220:CDS 40.0%
CACCACCAATTACAATTGCA+GGG - chr4_1:50162514-50162533 None:intergenic 40.0%
ACACCACCAATTACAATTGC+AGG - chr4_1:50162515-50162534 None:intergenic 40.0%
CTGAGAAGTAAAACACATCC+TGG - chr4_1:50162604-50162623 None:intergenic 40.0%
TGATTGCACATTTGACACCA+GGG - chr4_1:50162682-50162701 None:intergenic 40.0%
TTGATTGCACATTTGACACC+AGG - chr4_1:50162683-50162702 None:intergenic 40.0%
AATGTTGACATTTCAGGGCT+TGG - chr4_1:50162710-50162729 None:intergenic 40.0%
! TGTGGACATCATTTGTTGAG+AGG + chr4_1:50162910-50162929 Msa0553220:three_prime_UTR 40.0%
! GACATCATTTGTTGAGAGGT+TGG + chr4_1:50162914-50162933 Msa0553220:three_prime_UTR 40.0%
! TCATTTGTTGAGAGGTTGGA+TGG + chr4_1:50162918-50162937 Msa0553220:three_prime_UTR 40.0%
AATGTCGGGGAGGAAAAACT+TGG - chr4_1:50154350-50154369 None:intergenic 45.0%
TTCAAATGTCAATGTCGGGG+AGG - chr4_1:50154360-50154379 None:intergenic 45.0%
!! CTTCGTTGTGGAGAAGTACT+TGG - chr4_1:50154426-50154445 None:intergenic 45.0%
GTACTTCTCCACAACGAAGA+AGG + chr4_1:50154427-50154446 Msa0553220:CDS 45.0%
GATTTCACCCTTCTTCGTTG+TGG - chr4_1:50154438-50154457 None:intergenic 45.0%
CGGGATCTGAGGAAAAGAAA+AGG - chr4_1:50154500-50154519 None:intergenic 45.0%
GGAGAGTAGAGTAGATCAGA+TGG + chr4_1:50154943-50154962 Msa0553220:intron 45.0%
GAGTAGATCAGATGGGTAGT+AGG + chr4_1:50154951-50154970 Msa0553220:intron 45.0%
ATGGGTAGTAGGCAAATCAC+TGG + chr4_1:50154962-50154981 Msa0553220:intron 45.0%
CTAATCCCACTAAGTGAGAC+AGG - chr4_1:50155107-50155126 None:intergenic 45.0%
! AGGATTGTGTGTAAGGTGTC+TGG + chr4_1:50155290-50155309 Msa0553220:intron 45.0%
! GGATTGTGTGTAAGGTGTCT+GGG + chr4_1:50155291-50155310 Msa0553220:intron 45.0%
TGTTCCCCAACTCTTACTCA+TGG + chr4_1:50156164-50156183 Msa0553220:intron 45.0%
ACTGCCATGAGTAAGAGTTG+GGG - chr4_1:50156171-50156190 None:intergenic 45.0%
CAACTGCCATGAGTAAGAGT+TGG - chr4_1:50156173-50156192 None:intergenic 45.0%
AACAATGGGATGCATTCGTG+TGG + chr4_1:50156280-50156299 Msa0553220:CDS 45.0%
ATGCAGAGTTAGTTGAGGAC+AGG + chr4_1:50156551-50156570 Msa0553220:CDS 45.0%
TGCAGAGTTAGTTGAGGACA+GGG + chr4_1:50156552-50156571 Msa0553220:CDS 45.0%
!!! AGTTGAGGACAGGGGTTTTT+TGG + chr4_1:50156561-50156580 Msa0553220:CDS 45.0%
GGTTGTTGCTAATGCTGTTG+CGG + chr4_1:50156621-50156640 Msa0553220:CDS 45.0%
TTTGGAGAGGATCTTAGAGC+GGG - chr4_1:50156913-50156932 None:intergenic 45.0%
GACTAGGTCACTCAAATACC+TGG - chr4_1:50156992-50157011 None:intergenic 45.0%
ATCTAAGAGGAGGAGAGACT+AGG - chr4_1:50157008-50157027 None:intergenic 45.0%
TTTGGAGAGGATCTAAGAGG+AGG - chr4_1:50157018-50157037 None:intergenic 45.0%
GTTAGGTAGTGAGAGATGGT+AGG - chr4_1:50157088-50157107 None:intergenic 45.0%
GTTGGTTAGGTAGTGAGAGA+TGG - chr4_1:50157092-50157111 None:intergenic 45.0%
ACTACAAGCTGTTCAGCTTG+AGG - chr4_1:50157438-50157457 None:intergenic 45.0%
GATGATGACAGCTGAAACAG+TGG - chr4_1:50157790-50157809 None:intergenic 45.0%
AAAGATGGGCAAGGAAAGAC+AGG - chr4_1:50157812-50157831 None:intergenic 45.0%
GGACGCTCTTTCTAGATACA+AGG + chr4_1:50157901-50157920 Msa0553220:CDS 45.0%
AATTGGCATGCTGTAACCGT+GGG - chr4_1:50157970-50157989 None:intergenic 45.0%
CGACAGTACAACTGCACAAT+TGG - chr4_1:50157987-50158006 None:intergenic 45.0%
! AGTTGTACTGTCGGCTGTTA+AGG + chr4_1:50157994-50158013 Msa0553220:CDS 45.0%
GAGAGTAATGTCACAAGAGG+AGG - chr4_1:50158210-50158229 None:intergenic 45.0%
GCTGAGAGTAATGTCACAAG+AGG - chr4_1:50158213-50158232 None:intergenic 45.0%
ACAGGAGGCCCATAATCATT+TGG - chr4_1:50158408-50158427 None:intergenic 45.0%
ACACCTACAGATAGAACAGG+AGG - chr4_1:50158423-50158442 None:intergenic 45.0%
AGAAGAGAGGCTTTCCAACA+AGG + chr4_1:50158737-50158756 Msa0553220:intron 45.0%
GAAGAGAGGCTTTCCAACAA+GGG + chr4_1:50158738-50158757 Msa0553220:intron 45.0%
AAGGGAACTTCGCTAGATAG+GGG - chr4_1:50158850-50158869 None:intergenic 45.0%
GTAAGGGAACTTCGCTAGAT+AGG - chr4_1:50158852-50158871 None:intergenic 45.0%
CCTGCCAATGTTGTAACCAA+TGG - chr4_1:50159064-50159083 None:intergenic 45.0%
! CCATTGGTTACAACATTGGC+AGG + chr4_1:50159061-50159080 Msa0553220:intron 45.0%
AGAAAGGCTGTTCGTGCAAT+TGG + chr4_1:50159134-50159153 Msa0553220:CDS 45.0%
TTGTGAGAGCTTAGACACCT+TGG + chr4_1:50159428-50159447 Msa0553220:CDS 45.0%
ATCCACTTTCCTATCTGGAC+AGG + chr4_1:50159529-50159548 Msa0553220:intron 45.0%
TCATTGATGCCTGTCCAGAT+AGG - chr4_1:50159541-50159560 None:intergenic 45.0%
!! AATTGTAGTTGGACTAGCGC+AGG - chr4_1:50159647-50159666 None:intergenic 45.0%
CCACTTGAAGAAAGAGGGAA+AGG - chr4_1:50159936-50159955 None:intergenic 45.0%
CCTTTCCCTCTTTCTTCAAG+TGG + chr4_1:50159933-50159952 Msa0553220:intron 45.0%
CTGTGTGCGTTCACCATTAT+TGG + chr4_1:50160013-50160032 Msa0553220:intron 45.0%
TATGCACGATCTCGCAAATC+AGG - chr4_1:50160317-50160336 None:intergenic 45.0%
AGCTAGGTACATCAAAGGGA+GGG - chr4_1:50160623-50160642 None:intergenic 45.0%
AAGCTAGGTACATCAAAGGG+AGG - chr4_1:50160624-50160643 None:intergenic 45.0%
AGAAGCTCGTCAAGTAGAGA+AGG - chr4_1:50160721-50160740 None:intergenic 45.0%
TTCAGGGGGCTTGTGATAAA+CGG - chr4_1:50160767-50160786 None:intergenic 45.0%
TGCGGGTAACAAATGCTTCA+GGG - chr4_1:50160783-50160802 None:intergenic 45.0%
TAAATCCTGCTAATGGCCCT+GGG + chr4_1:50160869-50160888 Msa0553220:CDS 45.0%
TCACCAAGTAAATCTGGCAC+TGG - chr4_1:50160964-50160983 None:intergenic 45.0%
! ACTTGGTGATTTGATGGGCA+TGG + chr4_1:50160975-50160994 Msa0553220:CDS 45.0%
TTTGTATGGCGTTAAAGGGG+CGG + chr4_1:50161251-50161270 Msa0553220:intron 45.0%
GGGGACTAAAACACAACTTC+AGG + chr4_1:50161273-50161292 Msa0553220:intron 45.0%
! CCCCTTTGATTTCTACCACA+AGG - chr4_1:50161378-50161397 None:intergenic 45.0%
TGGTAGAAATCAAAGGGGCA+GGG + chr4_1:50161380-50161399 Msa0553220:intron 45.0%
!! GGGTACTGAAACCCAATTTC+AGG + chr4_1:50161402-50161421 Msa0553220:intron 45.0%
GATTATATCCTCCTCTGTCC+TGG + chr4_1:50161740-50161759 Msa0553220:intron 45.0%
AGTTGAAGCAGGCAGTACAA+CGG - chr4_1:50161783-50161802 None:intergenic 45.0%
GATGTTCCAGGTTGCAATTG+TGG - chr4_1:50162046-50162065 None:intergenic 45.0%
ATGTTCCAGAACATGTCCCA+AGG + chr4_1:50162091-50162110 Msa0553220:CDS 45.0%
ACCTGTAAAACTGAGCTAGG+CGG - chr4_1:50162118-50162137 None:intergenic 45.0%
GCAACCTGTAAAACTGAGCT+AGG - chr4_1:50162121-50162140 None:intergenic 45.0%
AAAACAACCAACAGCCTGTG+TGG + chr4_1:50162146-50162165 Msa0553220:CDS 45.0%
TGAAATACCACACAGGCTGT+TGG - chr4_1:50162156-50162175 None:intergenic 45.0%
TGAATGTGTTGCAGACATGG+AGG + chr4_1:50162453-50162472 Msa0553220:intron 45.0%
TACAATTGCAGGGAAGTCCT+TGG - chr4_1:50162504-50162523 None:intergenic 45.0%
AAAGCGTAAGAATGCGAACC+AGG + chr4_1:50162583-50162602 Msa0553220:CDS 45.0%
ATTAAAAGTGGTACCCCTCG+AGG - chr4_1:50162635-50162654 None:intergenic 45.0%
ATCGAACTTACCACAGTGGT+TGG + chr4_1:50162653-50162672 Msa0553220:CDS 45.0%
AAGCCATCGAGTCTCTTCTT+AGG + chr4_1:50162738-50162757 Msa0553220:CDS 45.0%
ACTCCTAAGAAGAGACTCGA+TGG - chr4_1:50162744-50162763 None:intergenic 45.0%
!! ACAAAAAAAATAAAAAAAAT+GGG - chr4_1:50158583-50158602 None:intergenic 5.0%
!!! AAAAAAAATAAAAATCTTTT+TGG - chr4_1:50161534-50161553 None:intergenic 5.0%
AGAAAACGGATCGGGATCTG+AGG - chr4_1:50154511-50154530 None:intergenic 50.0%
GTGGGGTAGGTTCTGTAGTA+AGG + chr4_1:50154922-50154941 Msa0553220:intron 50.0%
GGTAGTAGGCAAATCACTGG+AGG + chr4_1:50154965-50154984 Msa0553220:intron 50.0%
ACTAAGTGAGACAGGCTGCA+TGG - chr4_1:50155099-50155118 None:intergenic 50.0%
ATGCAGCCTGTCTCACTTAG+TGG + chr4_1:50155098-50155117 Msa0553220:intron 50.0%
TGCAGCCTGTCTCACTTAGT+GGG + chr4_1:50155099-50155118 Msa0553220:intron 50.0%
GTGATTGCTGCTATGACGGT+TGG + chr4_1:50155801-50155820 Msa0553220:CDS 50.0%
TGCTGCTATGACGGTTGGAA+AGG + chr4_1:50155806-50155825 Msa0553220:CDS 50.0%
ACTGCGAGTATAGCAAGGTC+CGG - chr4_1:50155936-50155955 None:intergenic 50.0%
TGCCTTAGCTGTGCGAACAA+TGG + chr4_1:50156265-50156284 Msa0553220:CDS 50.0%
GCCTTAGCTGTGCGAACAAT+GGG + chr4_1:50156266-50156285 Msa0553220:CDS 50.0%
TCCCATTGTTCGCACAGCTA+AGG - chr4_1:50156270-50156289 None:intergenic 50.0%
GCTGCTGTCTTGCGAACATA+TGG - chr4_1:50156502-50156521 None:intergenic 50.0%
GCAGAGTTAGTTGAGGACAG+GGG + chr4_1:50156553-50156572 Msa0553220:CDS 50.0%
TTGGAGAGGATCTTAGAGCG+GGG - chr4_1:50156912-50156931 None:intergenic 50.0%
AGCTGTTCAGCTTGAGGACA+AGG - chr4_1:50157432-50157451 None:intergenic 50.0%
CAAACAGTGGGACCCTAACA+GGG - chr4_1:50157475-50157494 None:intergenic 50.0%
TCAAACAGTGGGACCCTAAC+AGG - chr4_1:50157476-50157495 None:intergenic 50.0%
ATTGGCATGCTGTAACCGTG+GGG - chr4_1:50157969-50157988 None:intergenic 50.0%
CAATTGGCATGCTGTAACCG+TGG - chr4_1:50157971-50157990 None:intergenic 50.0%
!! ACTCATCACCAGCACTGATG+TGG + chr4_1:50158158-50158177 Msa0553220:CDS 50.0%
TGCCTGTCCAGATAGGAAAG+TGG - chr4_1:50159534-50159553 None:intergenic 50.0%
CTGGACAGGCATCAATGATC+TGG + chr4_1:50159543-50159562 Msa0553220:intron 50.0%
!! TTGGACTAGCGCAGGTTCTT+CGG - chr4_1:50159639-50159658 None:intergenic 50.0%
GGACCTGAATCATCTGCTGT+GGG - chr4_1:50159715-50159734 None:intergenic 50.0%
AGGACCTGAATCATCTGCTG+TGG - chr4_1:50159716-50159735 None:intergenic 50.0%
GAAAGAGGGAAAGGACTGCA+CGG - chr4_1:50159927-50159946 None:intergenic 50.0%
AAACCTCAGGGTCAGTTGAG+AGG - chr4_1:50160355-50160374 None:intergenic 50.0%
! GTACCTAGCTTGTCTTCTCC+AGG + chr4_1:50160633-50160652 Msa0553220:intron 50.0%
TTGTCTTCTCCAGGCAGCTA+AGG + chr4_1:50160642-50160661 Msa0553220:intron 50.0%
ACACAACATCCTTAGCTGCC+TGG - chr4_1:50160654-50160673 None:intergenic 50.0%
CGTCAAGTAGAGAAGGATCG+AGG - chr4_1:50160714-50160733 None:intergenic 50.0%
CGGGTAACAAATGCTTCAGG+GGG - chr4_1:50160781-50160800 None:intergenic 50.0%
GCGGGTAACAAATGCTTCAG+GGG - chr4_1:50160782-50160801 None:intergenic 50.0%
GTGCGGGTAACAAATGCTTC+AGG - chr4_1:50160784-50160803 None:intergenic 50.0%
TGTTACCCGCACACTTGCTT+CGG + chr4_1:50160792-50160811 Msa0553220:CDS 50.0%
GACTCGGATTCACTTCCATC+AGG - chr4_1:50160844-50160863 None:intergenic 50.0%
GTAAATCCTGCTAATGGCCC+TGG + chr4_1:50160868-50160887 Msa0553220:CDS 50.0%
GCACCAGTGCCAGATTTACT+TGG + chr4_1:50160958-50160977 Msa0553220:CDS 50.0%
TTGTATGGCGTTAAAGGGGC+GGG + chr4_1:50161252-50161271 Msa0553220:intron 50.0%
CATGTCATCTGTGGTCCTTG+TGG + chr4_1:50161360-50161379 Msa0553220:intron 50.0%
GTGGTAGAAATCAAAGGGGC+AGG + chr4_1:50161379-50161398 Msa0553220:intron 50.0%
GGTAGAAATCAAAGGGGCAG+GGG + chr4_1:50161381-50161400 Msa0553220:intron 50.0%
GTAGAAATCAAAGGGGCAGG+GGG + chr4_1:50161382-50161401 Msa0553220:intron 50.0%
GTTGAAGCAGGCAGTACAAC+GGG - chr4_1:50161782-50161801 None:intergenic 50.0%
GTTGTACTGCCTGCTTCAAC+TGG + chr4_1:50161782-50161801 Msa0553220:CDS 50.0%
AAACCCTGACCAGTTGAAGC+AGG - chr4_1:50161794-50161813 None:intergenic 50.0%
TCAGTGCACAGCTTACTAGG+CGG + chr4_1:50161819-50161838 Msa0553220:CDS 50.0%
!! ACATTTGGTCTTGCAGCTGC+TGG + chr4_1:50161926-50161945 Msa0553220:CDS 50.0%
!! CATTTGGTCTTGCAGCTGCT+GGG + chr4_1:50161927-50161946 Msa0553220:CDS 50.0%
CAGGTTCCACAATTGCAACC+TGG + chr4_1:50162037-50162056 Msa0553220:intron 50.0%
TGCAACCTGGAACATCAGCT+AGG + chr4_1:50162050-50162069 Msa0553220:CDS 50.0%
AGTGTCCTAGCTGATGTTCC+AGG - chr4_1:50162058-50162077 None:intergenic 50.0%
AGCTAGGACACTCCTTCCTA+TGG + chr4_1:50162066-50162085 Msa0553220:CDS 50.0%
! TCCGCCTAGCTCAGTTTTAC+AGG + chr4_1:50162114-50162133 Msa0553220:CDS 50.0%
ACGCTCCATTCTACCATCCT+CGG - chr4_1:50162209-50162228 None:intergenic 50.0%
TTCTCAGCTAAACTGCCTCG+AGG + chr4_1:50162617-50162636 Msa0553220:CDS 50.0%
TCTCAGCTAAACTGCCTCGA+GGG + chr4_1:50162618-50162637 Msa0553220:CDS 50.0%
GAATCGAGCAGAAGGAAGGG+CGG + chr4_1:50154377-50154396 Msa0553220:five_prime_UTR 55.0%
AGGGCGGAGCAAAGATGAGT+CGG + chr4_1:50154393-50154412 Msa0553220:exon 55.0%
! TTGGGAGCACAAGATGGGGA+GGG - chr4_1:50156123-50156142 None:intergenic 55.0%
! ATTGGGAGCACAAGATGGGG+AGG - chr4_1:50156124-50156143 None:intergenic 55.0%
TGCGGCACTCGCTGAAATTC+AGG + chr4_1:50156639-50156658 Msa0553220:CDS 55.0%
TGGAGAGGATCTTAGAGCGG+GGG - chr4_1:50156911-50156930 None:intergenic 55.0%
!! TCACCAGCACTGATGTGGTC+CGG + chr4_1:50158163-50158182 Msa0553220:CDS 55.0%
ATTCCGGACCACATCAGTGC+TGG - chr4_1:50158169-50158188 None:intergenic 55.0%
GGGCCTCCTGTTCTATCTGT+AGG + chr4_1:50158417-50158436 Msa0553220:intron 55.0%
GAGGTGGGGGATAGAGAAGT+TGG + chr4_1:50159331-50159350 Msa0553220:intron 55.0%
!! TGGACTAGCGCAGGTTCTTC+GGG - chr4_1:50159638-50159657 None:intergenic 55.0%
! GGCCCTCAGTTGGCTTCTTA+AGG - chr4_1:50159694-50159713 None:intergenic 55.0%
TCTCCTCTCAACTGACCCTG+AGG + chr4_1:50160349-50160368 Msa0553220:CDS 55.0%
CTGCCTGGAGAAGACAAGCT+AGG - chr4_1:50160639-50160658 None:intergenic 55.0%
TGGAAGTAGGAGGTGACCCA+GGG - chr4_1:50160888-50160907 None:intergenic 55.0%
TGTATGGCGTTAAAGGGGCG+GGG + chr4_1:50161253-50161272 Msa0553220:intron 55.0%
ACTGCCTGCTTCAACTGGTC+AGG + chr4_1:50161787-50161806 Msa0553220:CDS 55.0%
CTGCCTGCTTCAACTGGTCA+GGG + chr4_1:50161788-50161807 Msa0553220:CDS 55.0%
CAGTGCACAGCTTACTAGGC+GGG + chr4_1:50161820-50161839 Msa0553220:CDS 55.0%
AACTGAGCTAGGCGGACCTT+GGG - chr4_1:50162110-50162129 None:intergenic 55.0%
AAACTGAGCTAGGCGGACCT+TGG - chr4_1:50162111-50162130 None:intergenic 55.0%
CTCAGCTAAACTGCCTCGAG+GGG + chr4_1:50162619-50162638 Msa0553220:CDS 55.0%
ACCACAGTGGTTGGAAACCC+TGG + chr4_1:50162662-50162681 Msa0553220:CDS 55.0%
ACCAGGGTTTCCAACCACTG+TGG - chr4_1:50162666-50162685 None:intergenic 55.0%
CGAGTATAGCAAGGTCCGGC+TGG - chr4_1:50155932-50155951 None:intergenic 60.0%
GGAGAGGATCTTAGAGCGGG+GGG - chr4_1:50156910-50156929 None:intergenic 60.0%
CAAGGCTGCTGATGCACGTG+AGG + chr4_1:50157919-50157938 Msa0553220:CDS 60.0%
CTTGGCTTCGGGCTCATCCA+AGG - chr4_1:50159448-50159467 None:intergenic 60.0%
CTTGGATGAGCCCGAAGCCA+AGG + chr4_1:50159446-50159465 Msa0553220:CDS 60.0%
! GGACTAGCGCAGGTTCTTCG+GGG - chr4_1:50159637-50159656 None:intergenic 60.0%
ATCTGCTGTGGGCCCTCAGT+TGG - chr4_1:50159704-50159723 None:intergenic 60.0%
GGGCCCACAGCAGATGATTC+AGG + chr4_1:50159709-50159728 Msa0553220:CDS 60.0%
TCTGGGCCGAAGCAAGTGTG+CGG - chr4_1:50160801-50160820 None:intergenic 60.0%
CTGGAAGTAGGAGGTGACCC+AGG - chr4_1:50160889-50160908 None:intergenic 60.0%
!! GAAGCTGGTGCCACAGATGC+AGG - chr4_1:50160922-50160941 None:intergenic 60.0%
GCAGAAGGTGGAGGTGAAGC+TGG - chr4_1:50160937-50160956 None:intergenic 60.0%
ACTGGTGCAGCAGAAGGTGG+AGG - chr4_1:50160946-50160965 None:intergenic 60.0%
!! TCTGGCACTGGTGCAGCAGA+AGG - chr4_1:50160952-50160971 None:intergenic 60.0%
ACCAGCCAGCTGCTCCTTCA+GGG + chr4_1:50161022-50161041 Msa0553220:CDS 60.0%
ACTCACCCTGAAGGAGCAGC+TGG - chr4_1:50161030-50161049 None:intergenic 60.0%
GTATGGCGTTAAAGGGGCGG+GGG + chr4_1:50161254-50161273 Msa0553220:intron 60.0%
TCCTCCTCTGTCCTGGTTGC+AGG + chr4_1:50161747-50161766 Msa0553220:intron 60.0%
GGCAGTACAACGGGCAAAGG+AGG - chr4_1:50161773-50161792 None:intergenic 60.0%
GCAGGCAGTACAACGGGCAA+AGG - chr4_1:50161776-50161795 None:intergenic 60.0%
GCACAGCTTACTAGGCGGGA+TGG + chr4_1:50161824-50161843 Msa0553220:CDS 60.0%
GCGGACCTTGGGACATGTTC+TGG - chr4_1:50162099-50162118 None:intergenic 60.0%
!! TGGTGGTGTTGACGCAACCG+TGG + chr4_1:50162526-50162545 Msa0553220:CDS 60.0%
TGACGCAACCGTGGAACGAC+TGG + chr4_1:50162535-50162554 Msa0553220:CDS 60.0%
TGATGCGGCCAGTCGTTCCA+CGG - chr4_1:50162546-50162565 None:intergenic 60.0%
CTGGGCCGAAGCAAGTGTGC+GGG - chr4_1:50160800-50160819 None:intergenic 65.0%
GGTGACCCAGGGCCATTAGC+AGG - chr4_1:50160877-50160896 None:intergenic 65.0%
!! GGCACTGGTGCAGCAGAAGG+TGG - chr4_1:50160949-50160968 None:intergenic 65.0%
! GGAGCAGCTGGCTGGTCAAG+AGG - chr4_1:50161018-50161037 None:intergenic 65.0%
GACCAGCCAGCTGCTCCTTC+AGG + chr4_1:50161021-50161040 Msa0553220:CDS 65.0%
ACCCTGAAGGAGCAGCTGGC+TGG - chr4_1:50161026-50161045 None:intergenic 65.0%
! GGGAGGGGGCATGTCATCTG+TGG + chr4_1:50161351-50161370 Msa0553220:intron 65.0%
GCCTGCAACCAGGACAGAGG+AGG - chr4_1:50161751-50161770 None:intergenic 65.0%
GAGGCCTGCAACCAGGACAG+AGG - chr4_1:50161754-50161773 None:intergenic 65.0%
GGCAAAGGAGGCCTGCAACC+AGG - chr4_1:50161761-50161780 None:intergenic 65.0%
!! GGAGCGTGCCGCTTTCCTTG+AGG + chr4_1:50162222-50162241 Msa0553220:CDS 65.0%
TGCAGCTGCTGGGCCCCTGC+AGG + chr4_1:50161937-50161956 Msa0553220:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 50154292 50163018 50154292 ID=Msa0553220;Name=Msa0553220
chr4_1 mRNA 50154292 50163018 50154292 ID=Msa0553220-mRNA-1;Parent=Msa0553220;Name=Msa0553220-mRNA-1;_AED=0.05;_eAED=0.05;_QI=115|0.92|0.93|1|1|1|15|252|906
chr4_1 exon 50154292 50154493 50154292 ID=Msa0553220-mRNA-1:exon:14157;Parent=Msa0553220-mRNA-1
chr4_1 exon 50155774 50156001 50155774 ID=Msa0553220-mRNA-1:exon:14158;Parent=Msa0553220-mRNA-1
chr4_1 exon 50156236 50156349 50156236 ID=Msa0553220-mRNA-1:exon:14159;Parent=Msa0553220-mRNA-1
chr4_1 exon 50156490 50156740 50156490 ID=Msa0553220-mRNA-1:exon:14160;Parent=Msa0553220-mRNA-1
chr4_1 exon 50157880 50158015 50157880 ID=Msa0553220-mRNA-1:exon:14161;Parent=Msa0553220-mRNA-1
chr4_1 exon 50158138 50158317 50158138 ID=Msa0553220-mRNA-1:exon:14162;Parent=Msa0553220-mRNA-1
chr4_1 exon 50158439 50158531 50158439 ID=Msa0553220-mRNA-1:exon:14163;Parent=Msa0553220-mRNA-1
chr4_1 exon 50159083 50159294 50159083 ID=Msa0553220-mRNA-1:exon:14164;Parent=Msa0553220-mRNA-1
chr4_1 exon 50159404 50159467 50159404 ID=Msa0553220-mRNA-1:exon:14165;Parent=Msa0553220-mRNA-1
chr4_1 exon 50159551 50159730 50159551 ID=Msa0553220-mRNA-1:exon:14166;Parent=Msa0553220-mRNA-1
chr4_1 exon 50160278 50160370 50160278 ID=Msa0553220-mRNA-1:exon:14167;Parent=Msa0553220-mRNA-1
chr4_1 exon 50160655 50161043 50160655 ID=Msa0553220-mRNA-1:exon:14168;Parent=Msa0553220-mRNA-1
chr4_1 exon 50161769 50161958 50161769 ID=Msa0553220-mRNA-1:exon:14169;Parent=Msa0553220-mRNA-1
chr4_1 exon 50162040 50162243 50162040 ID=Msa0553220-mRNA-1:exon:14170;Parent=Msa0553220-mRNA-1
chr4_1 exon 50162467 50163018 50162467 ID=Msa0553220-mRNA-1:exon:14171;Parent=Msa0553220-mRNA-1
chr4_1 five_prime_UTR 50154292 50154406 50154292 ID=Msa0553220-mRNA-1:five_prime_utr;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50154407 50154493 50154407 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50155774 50156001 50155774 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50156236 50156349 50156236 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50156490 50156740 50156490 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50157880 50158015 50157880 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50158138 50158317 50158138 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50158439 50158531 50158439 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50159083 50159294 50159083 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50159404 50159467 50159404 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50159551 50159730 50159551 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50160278 50160370 50160278 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50160655 50161043 50160655 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50161769 50161958 50161769 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50162040 50162243 50162040 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 CDS 50162467 50162766 50162467 ID=Msa0553220-mRNA-1:cds;Parent=Msa0553220-mRNA-1
chr4_1 three_prime_UTR 50162767 50163018 50162767 ID=Msa0553220-mRNA-1:three_prime_utr;Parent=Msa0553220-mRNA-1
Gene Sequence

>Msa0553220

ATGAGTCGGAACGACTCCAAGTACTTCTCCACAACGAAGAAGGGTGAAATCCCTGAACTCAAAGAAGAGCTTAATTCTCAGTACAAGGATAAGAGAAAAGATGCAGTGAAAAAAGTGATTGCTGCTATGACGGTTGGAAAGGATGTGTCATCACTGTTTACAGATGTAGTGAATTGCATGCAAACAGAAAATTTGGAGCTGAAAAAGTTGGTATACTTGTATCTGATAAATTATGCAAAGAGCCAGCCGGACCTTGCTATACTCGCAGTAAACACATTTGTAAAGGTGAAAGCTCGAATGACCATTCTTTTGTCTGATTCACAAGATCCAAATCCTTTAATTCGTGCCTTAGCTGTGCGAACAATGGGATGCATTCGTGTGGATAAAATTACCGAGTATCTATGTGATCCCCTTCAAAGATGTCTAAAGGACGATGATCCATATGTTCGCAAGACAGCAGCCATTTGTGTTGCAAAGCTGTATGACATAAATGCAGAGTTAGTTGAGGACAGGGGTTTTTTGGAATCACTGAAGGATTTGATATCCGACAATAATCCAATGGTTGTTGCTAATGCTGTTGCGGCACTCGCTGAAATTCAGGACAATAGCACTAGACCCATCTTTGAGATCACTAGTCATACACTGTCAAAGCTCCTCACTGCATTAAATGAATGTACAGAATGGGGTCAAGTTTTTATACTGGACGCTCTTTCTAGATACAAGGCTGCTGATGCACGTGAGGCAGAAAACATTGTAGAAAGAGTTACCCCACGGTTACAGCATGCCAATTGTGCAGTTGTACTGTCGGCTGTTAAGATGATCCTTCAACAAATGGAACTCATCACCAGCACTGATGTGGTCCGGAATCTTTGCAAAAAGATGGCTCCTCCTCTTGTGACATTACTCTCAGCAGAACCTGAGATACAATATGTTGCCCTGCGAAATATCAATCTTATTGTACAAAGAAGGCCGACAATTCTTGCACATGAAATTAAGGTGTTCTTCTGCAAATACAATGATCCTATATATGTGAAAATGGAGAAATTAGAAATCATGATAAAACTTGCTTCAGACCGAAATATAGACCAGGTTTTGTTGGAATTTAAGGAGTATGCTACTGAAGTTGACGTAGATTTTGTTAGAAAGGCTGTTCGTGCAATTGGTCGTTGTGCCATTAAATTAGAGAGAGCAGCTGAAAGATGCATTAGTGTTTTGCTAGAGCTGATCAAGATAAAAGTAAATTATGTGGTTCAAGAGGCAATCATTGTTATCAAAGACATATTTAGACGATACCCCAACACATATGAGTCCATAATTGCAACTCTTTGTGAGAGCTTAGACACCTTGGATGAGCCCGAAGCCAAGGCATCAATGATCTGGATAATTGGTGAATATGCGGAAAGAATTGACAATGCTGACGAGCTTCTTGAAAGTTTCTTGGAAAGTTTCCCCGAAGAACCTGCGCTAGTCCAACTACAATTGCTGACAGCTACTGTTAAACTTTTCCTTAAGAAGCCAACTGAGGGCCCACAGCAGATGATTCAGGTTGTTTTGAACAATGCGACTATGGAGACAGATAATCCTGATTTGCGAGATCGTGCATACATATATTGGCGTCTCCTCTCAACTGACCCTGAGGCAGCTAAGGATGTTGTGTTAGCTGAGAAGCCTGTGATAACTGATGACTCAAACAACCTCGATCCTTCTCTACTTGACGAGCTTCTAGTCAATATTGCTACATTATCTTCCGTTTATCACAAGCCCCCTGAAGCATTTGTTACCCGCACACTTGCTTCGGCCCAGAAAACTGAAGATGATGACTATCCTGATGGAAGTGAATCCGAGTCATCTGTAAATCCTGCTAATGGCCCTGGGTCACCTCCTACTTCCAGCTATACAATACCTGCATCTGTGGCACCAGCTTCACCTCCACCTTCTGCTGCACCAGTGCCAGATTTACTTGGTGATTTGATGGGCATGGATAATAGTTCTATTGTTCCTCTTGACCAGCCAGCTGCTCCTTCAGGGCCTCCTTTGCCCGTTGTACTGCCTGCTTCAACTGGTCAGGGTTTACAAATCAGTGCACAGCTTACTAGGCGGGATGGTCAAGTATTCTACAATATGTTATTTGAGAACAATTCTCAAGTTCCACTTGATGGATTCATGATCCAATTTAACAAGAACACATTTGGTCTTGCAGCTGCTGGGCCCCTGCAGGTTCCACAATTGCAACCTGGAACATCAGCTAGGACACTCCTTCCTATGGTTATGTTCCAGAACATGTCCCAAGGTCCGCCTAGCTCAGTTTTACAGGTTGCCTTAAAAAACAACCAACAGCCTGTGTGGTATTTCAACGATAAAATCTTATTCCAAGCATTTTTTACCGAGGATGGTAGAATGGAGCGTGCCGCTTTCCTTGAGACATGGAGGTCCCTTCCTGATTCAAATGAAGTTTCCAAGGACTTCCCTGCAATTGTAATTGGTGGTGTTGACGCAACCGTGGAACGACTGGCCGCATCAAACATATTCTTTATTGCAAAGCGTAAGAATGCGAACCAGGATGTGTTTTACTTCTCAGCTAAACTGCCTCGAGGGGTACCACTTTTAATCGAACTTACCACAGTGGTTGGAAACCCTGGTGTCAAATGTGCAATCAAGACACCAAGCCCTGAAATGTCAACATTTATCTTCGAAGCCATCGAGTCTCTTCTTAGGAGTTAA
Protein sequence

>Msa0553220

MSRNDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKVKARMTILLSDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIQDNSTRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPALVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATMETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNNLDPSLLDELLVNIATLSSVYHKPPEAFVTRTLASAQKTEDDDYPDGSESESSVNPANGPGSPPTSSYTIPASVAPASPPPSAAPVPDLLGDLMGMDNSSIVPLDQPAAPSGPPLPVVLPASTGQGLQISAQLTRRDGQVFYNMLFENNSQVPLDGFMIQFNKNTFGLAAAGPLQVPQLQPGTSARTLLPMVMFQNMSQGPPSSVLQVALKNNQQPVWYFNDKILFQAFFTEDGRMERAAFLETWRSLPDSNEVSKDFPAIVIGGVDATVERLAASNIFFIAKRKNANQDVFYFSAKLPRGVPLLIELTTVVGNPGVKCAIKTPSPEMSTFIFEAIESLLRS*