AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0743260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743260 MtrunA17_Chr5g0445071 100.000 70 0 0 1 70 1 70 4.12e-46 141
Msa0743260 MtrunA17_Chr3g0100571 81.429 70 13 0 1 70 1 70 3.88e-39 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743260 AT4G26710.2 78.571 70 15 0 1 70 1 70 9.65e-37 117
Msa0743260 AT4G26710.1 78.571 70 15 0 1 70 1 70 9.65e-37 117
Msa0743260 AT5G55290.2 72.857 70 19 0 1 70 1 70 1.56e-34 112
Msa0743260 AT5G55290.3 72.857 70 19 0 1 70 1 70 1.56e-34 112
Msa0743260 AT5G55290.1 72.857 70 19 0 1 70 1 70 1.56e-34 112

Find 39 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATGAAAGGGGATTATT+TGG 0.193875 5_1:+63406119 Msa0743260:three_prime_UTR
ATAGTGGGAGTATGTGTTTA+AGG 0.296346 5_1:+63406089 Msa0743260:three_prime_UTR
TGGATAGATGTATTTATTGT+TGG 0.370505 5_1:+63405982 Msa0743260:three_prime_UTR
TTTCAGAAGTTGGTAAATAG+TGG 0.384932 5_1:+63406073 Msa0743260:three_prime_UTR
GCTTCATTCATTTCAGAAGT+TGG 0.411244 5_1:+63406063 Msa0743260:three_prime_UTR
TTGATGTAAGAACCAAAGTT+AGG 0.415305 5_1:-63404296 None:intergenic
TAGTGGGAGTATGTGTTTAA+GGG 0.417052 5_1:+63406090 Msa0743260:three_prime_UTR
TCGCTAATCTTCCTACTAAT+CGG 0.424691 5_1:+63403367 Msa0743260:CDS
CAGGTGGGCGATTGTATATC+TGG 0.425794 5_1:+63405814 Msa0743260:intron
TGAAGCAAATTCTTGTAGAA+AGG 0.427326 5_1:-63403402 None:intergenic
ATGTATTTATTGTTGGATAG+TGG 0.428598 5_1:+63405989 Msa0743260:three_prime_UTR
AGGGAAATAAGTTGATGAAA+GGG 0.437221 5_1:+63406109 Msa0743260:three_prime_UTR
TTGCAGATTTCACCTAACTT+TGG 0.445042 5_1:+63404284 Msa0743260:intron
ATGTTTGACACAAGAACATA+TGG 0.468957 5_1:+63406269 Msa0743260:three_prime_UTR
TATATAAGAAGAAAATAAGT+TGG 0.469808 5_1:+63406151 Msa0743260:three_prime_UTR
CTCAAGATGGGAACTATGAG+TGG 0.483301 5_1:-63405848 None:intergenic
TTACATCAACAATATGCTGC+TGG 0.486981 5_1:+63404310 Msa0743260:CDS
ATGCGATGATTCCGATTAGT+AGG 0.487899 5_1:-63403378 None:intergenic
ACAAGAATTTGCTTCAACAA+AGG 0.488569 5_1:+63403409 Msa0743260:CDS
AAAGCAGATCGAAATCTCAA+TGG 0.496028 5_1:+63403330 Msa0743260:exon
AAGGGAAATAAGTTGATGAA+AGG 0.497120 5_1:+63406108 Msa0743260:three_prime_UTR
TTATTCGCCATCACTCAAGA+TGG 0.522896 5_1:-63405861 None:intergenic
AAGCAGATCGAAATCTCAAT+GGG 0.524464 5_1:+63403331 Msa0743260:exon
GGGAAATAAGTTGATGAAAG+GGG 0.525060 5_1:+63406110 Msa0743260:three_prime_UTR
CTCTTCTCATTAGTATCACA+TGG 0.531827 5_1:+63406222 Msa0743260:three_prime_UTR
TATTCTCTCAAGCAGACAAT+CGG 0.534325 5_1:-63405926 None:intergenic
TTCAGAAGTTGGTAAATAGT+GGG 0.546216 5_1:+63406074 Msa0743260:three_prime_UTR
ACACAAGAACATATGGTAAG+TGG 0.557073 5_1:+63406276 Msa0743260:three_prime_UTR
TATTCGCCATCACTCAAGAT+GGG 0.588379 5_1:-63405860 None:intergenic
CTGCTTGAGAGAATATGACT+TGG 0.591446 5_1:+63405934 Msa0743260:three_prime_UTR
ATAGTTCCCATCTTGAGTGA+TGG 0.596385 5_1:+63405854 Msa0743260:CDS
AAACGCTGCAGCAGCAACGG+GGG 0.630395 5_1:-63406304 None:intergenic
AAAACGCTGCAGCAGCAACG+GGG 0.632461 5_1:-63406305 None:intergenic
ACAGTTACATTACACGTGGA+AGG 0.637926 5_1:-63403221 None:intergenic
GGCGCATACAGATTAGCAGA+AGG 0.638374 5_1:-63403433 None:intergenic
TCAAGATGGGAACTATGAGT+GGG 0.654151 5_1:-63405847 None:intergenic
GAATGAATGAACGAACGTGT+AGG 0.664755 5_1:-63403251 None:intergenic
AGCTACAGTTACATTACACG+TGG 0.669670 5_1:-63403225 None:intergenic
GATTAGTAGGAAGATTAGCG+AGG 0.670161 5_1:-63403365 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAATATATTGAAGTT+TGG - chr5_1:63403457-63403476 None:intergenic 15.0%
!! ATTAAGATAATATCAATTGT+TGG + chr5_1:63403534-63403553 Msa0743260:intron 15.0%
!!! TTGTATAATTCAATTTTATG+TGG + chr5_1:63403570-63403589 Msa0743260:intron 15.0%
!!! ATTTAATTTATCTTGAGTTA+TGG + chr5_1:63403752-63403771 Msa0743260:intron 15.0%
!! AAACAATTCATAACAAAATA+AGG - chr5_1:63404168-63404187 None:intergenic 15.0%
!! ATCTATAGTGTATTAATAAA+TGG + chr5_1:63404997-63405016 Msa0743260:intron 15.0%
!! TATATAAGAAGAAAATAAGT+TGG + chr5_1:63406151-63406170 Msa0743260:three_prime_UTR 15.0%
!! ATAAATGAAGAAATTAGGAA+GGG - chr5_1:63403502-63403521 None:intergenic 20.0%
!! AATAAATGAAGAAATTAGGA+AGG - chr5_1:63403503-63403522 None:intergenic 20.0%
!! TCCTAATTTCTTCATTTATT+TGG + chr5_1:63403503-63403522 Msa0743260:intron 20.0%
!! TCCAAATAAATGAAGAAATT+AGG - chr5_1:63403507-63403526 None:intergenic 20.0%
!!! ATAATTCAATTTTATGTGGA+TGG + chr5_1:63403574-63403593 Msa0743260:intron 20.0%
!! ATGATAAGTATGCTAAAATT+TGG + chr5_1:63403800-63403819 Msa0743260:intron 20.0%
!!! TTTTAACAAACATGAAAAGT+TGG - chr5_1:63404073-63404092 None:intergenic 20.0%
!!! AACTTTTCATGTTTGTTAAA+AGG + chr5_1:63404072-63404091 Msa0743260:intron 20.0%
!! TAAGAATGTTAAATCAAACA+TGG - chr5_1:63404347-63404366 None:intergenic 20.0%
!! TTGATTTAACATTCTTAGTT+TGG + chr5_1:63404350-63404369 Msa0743260:intron 20.0%
!! GACATTAGTAATGATAAAAA+TGG - chr5_1:63404589-63404608 None:intergenic 20.0%
!! CTAAGTAAAAGTAATTGAAT+AGG + chr5_1:63404802-63404821 Msa0743260:intron 20.0%
!!! CTTTATCTTGTTTTTTTTAG+AGG + chr5_1:63404930-63404949 Msa0743260:intron 20.0%
!! ATGAGAAAATTGTAAAGTTT+AGG + chr5_1:63405122-63405141 Msa0743260:intron 20.0%
!!! TATTTATTTGAGTTCTAGTA+AGG + chr5_1:63405149-63405168 Msa0743260:intron 20.0%
!!! TCATTTTTTTATGTATGAGA+TGG + chr5_1:63405667-63405686 Msa0743260:intron 20.0%
!! CATAGAAAAAAATTGTATTC+AGG - chr5_1:63405964-63405983 None:intergenic 20.0%
!!! CTGAATACAATTTTTTTCTA+TGG + chr5_1:63405962-63405981 Msa0743260:three_prime_UTR 20.0%
!! ATAATATCAATTGTTGGCTA+TGG + chr5_1:63403540-63403559 Msa0743260:intron 25.0%
! AATAAGTTGTTTATTCCCAT+AGG + chr5_1:63403825-63403844 Msa0743260:intron 25.0%
! ATAAGTTGTTTATTCCCATA+GGG + chr5_1:63403826-63403845 Msa0743260:intron 25.0%
!!! AAAAAACAGAACTTTGAGAT+AGG - chr5_1:63404247-63404266 None:intergenic 25.0%
! TACTGAAAAGTTTCACAATT+AGG + chr5_1:63404402-63404421 Msa0743260:intron 25.0%
! ATTAGAACAAACAACTTCAA+GGG - chr5_1:63404712-63404731 None:intergenic 25.0%
! TATTAGAACAAACAACTTCA+AGG - chr5_1:63404713-63404732 None:intergenic 25.0%
!! TTTACTTAGTGCTTCTAAAA+AGG - chr5_1:63404791-63404810 None:intergenic 25.0%
!!! TATCTTGTTTTTTTTAGAGG+AGG + chr5_1:63404933-63404952 Msa0743260:intron 25.0%
!!! AAAGCACTTATTGATTCATA+GGG - chr5_1:63405043-63405062 None:intergenic 25.0%
!!! TAAAGCACTTATTGATTCAT+AGG - chr5_1:63405044-63405063 None:intergenic 25.0%
! TGATGTTAAAATGAGTGTTA+TGG - chr5_1:63405598-63405617 None:intergenic 25.0%
! ATAAAACAAATCAAACACCA+AGG - chr5_1:63405794-63405813 None:intergenic 25.0%
!!! TTTGATTTGTTTTATCAGGT+GGG + chr5_1:63405799-63405818 Msa0743260:intron 25.0%
! TGGATAGATGTATTTATTGT+TGG + chr5_1:63405982-63406001 Msa0743260:three_prime_UTR 25.0%
! ATGTATTTATTGTTGGATAG+TGG + chr5_1:63405989-63406008 Msa0743260:three_prime_UTR 25.0%
TGAAGCAAATTCTTGTAGAA+AGG - chr5_1:63403405-63403424 None:intergenic 30.0%
! ACAAGAATTTGCTTCAACAA+AGG + chr5_1:63403409-63403428 Msa0743260:CDS 30.0%
! TTCAATTTTATGTGGATGGT+TGG + chr5_1:63403578-63403597 Msa0743260:intron 30.0%
! TGGATTGGATTATCTCATAA+TGG + chr5_1:63403603-63403622 Msa0743260:intron 30.0%
! GTCTGTTCATAATCTGTTTT+CGG + chr5_1:63403675-63403694 Msa0743260:intron 30.0%
! CTTTTTATCTTAGACCCTAT+GGG - chr5_1:63403843-63403862 None:intergenic 30.0%
! CATAGGGTCTAAGATAAAAA+GGG + chr5_1:63403842-63403861 Msa0743260:intron 30.0%
! ATTTTTGCAGAGTAAGTTTC+TGG + chr5_1:63404044-63404063 Msa0743260:intron 30.0%
! TTTTTGCAGAGTAAGTTTCT+GGG + chr5_1:63404045-63404064 Msa0743260:intron 30.0%
! AGATTTTATCGACATCTTTC+TGG + chr5_1:63404122-63404141 Msa0743260:intron 30.0%
! GATTTTATCGACATCTTTCT+GGG + chr5_1:63404123-63404142 Msa0743260:intron 30.0%
TTGATGTAAGAACCAAAGTT+AGG - chr5_1:63404299-63404318 None:intergenic 30.0%
AAGTGAATAGATTAAGCTTG+GGG - chr5_1:63404678-63404697 None:intergenic 30.0%
GAAGTGAATAGATTAAGCTT+GGG - chr5_1:63404679-63404698 None:intergenic 30.0%
AGAAGTGAATAGATTAAGCT+TGG - chr5_1:63404680-63404699 None:intergenic 30.0%
GCACAAATAAACAGTGAAAA+TGG + chr5_1:63404824-63404843 Msa0743260:intron 30.0%
AGTAGACAAAAGAATATGTC+AGG + chr5_1:63404904-63404923 Msa0743260:intron 30.0%
! TGAATCAAAGCATTTGGAAA+GGG - chr5_1:63405274-63405293 None:intergenic 30.0%
TTTCCAAATGCTTTGATTCA+CGG + chr5_1:63405274-63405293 Msa0743260:intron 30.0%
GATTATACTGGACAAGATTA+TGG - chr5_1:63405490-63405509 None:intergenic 30.0%
AATCTTGTCCAGTATAATCA+AGG + chr5_1:63405491-63405510 Msa0743260:intron 30.0%
ATGATACAAACACATTGCTT+TGG + chr5_1:63405541-63405560 Msa0743260:intron 30.0%
TGATACAAACACATTGCTTT+GGG + chr5_1:63405542-63405561 Msa0743260:intron 30.0%
AACAAAAGTTTATCGACACA+AGG - chr5_1:63405648-63405667 None:intergenic 30.0%
!!! GGTGTTTGATTTGTTTTATC+AGG + chr5_1:63405795-63405814 Msa0743260:intron 30.0%
!!! GTTTGATTTGTTTTATCAGG+TGG + chr5_1:63405798-63405817 Msa0743260:intron 30.0%
!! TTTCAGAAGTTGGTAAATAG+TGG + chr5_1:63406073-63406092 Msa0743260:three_prime_UTR 30.0%
!! TTCAGAAGTTGGTAAATAGT+GGG + chr5_1:63406074-63406093 Msa0743260:three_prime_UTR 30.0%
!! AAGGGAAATAAGTTGATGAA+AGG + chr5_1:63406108-63406127 Msa0743260:three_prime_UTR 30.0%
!! AGGGAAATAAGTTGATGAAA+GGG + chr5_1:63406109-63406128 Msa0743260:three_prime_UTR 30.0%
ATGTTTGACACAAGAACATA+TGG + chr5_1:63406269-63406288 Msa0743260:three_prime_UTR 30.0%
AAAGCAGATCGAAATCTCAA+TGG + chr5_1:63403330-63403349 Msa0743260:exon 35.0%
AAGCAGATCGAAATCTCAAT+GGG + chr5_1:63403331-63403350 Msa0743260:exon 35.0%
TCGCTAATCTTCCTACTAAT+CGG + chr5_1:63403367-63403386 Msa0743260:CDS 35.0%
! TTTTATGTGGATGGTTGGAT+TGG + chr5_1:63403583-63403602 Msa0743260:intron 35.0%
!!! TAGTTTTGGCACTGGAAAAA+TGG - chr5_1:63403651-63403670 None:intergenic 35.0%
! TTTTTCCAGTGCCAAAACTA+AGG + chr5_1:63403651-63403670 Msa0743260:intron 35.0%
! TTTTCCAGTGCCAAAACTAA+GGG + chr5_1:63403652-63403671 Msa0743260:intron 35.0%
CGAGAATGTCTAATGAAAAC+AGG + chr5_1:63403716-63403735 Msa0743260:intron 35.0%
! CCTTTTTATCTTAGACCCTA+TGG - chr5_1:63403844-63403863 None:intergenic 35.0%
! CCATAGGGTCTAAGATAAAA+AGG + chr5_1:63403841-63403860 Msa0743260:intron 35.0%
! AATGTTGCTTACAGACTTCA+TGG + chr5_1:63403893-63403912 Msa0743260:intron 35.0%
TGACATAACTGATAGATCGT+GGG + chr5_1:63403990-63404009 Msa0743260:intron 35.0%
TTGCAGATTTCACCTAACTT+TGG + chr5_1:63404284-63404303 Msa0743260:intron 35.0%
TTACATCAACAATATGCTGC+TGG + chr5_1:63404310-63404329 Msa0743260:CDS 35.0%
ACTCGTACAAGTTACAACAT+TGG + chr5_1:63404531-63404550 Msa0743260:intron 35.0%
CAGACGGCTAATAAAAATGA+TGG - chr5_1:63405091-63405110 None:intergenic 35.0%
TGAAATTGAACAAACACACG+TGG + chr5_1:63405181-63405200 Msa0743260:intron 35.0%
TCTGACAGCATATACTCTTT+GGG - chr5_1:63405228-63405247 None:intergenic 35.0%
! GTGAATCAAAGCATTTGGAA+AGG - chr5_1:63405275-63405294 None:intergenic 35.0%
TTCCAAATGCTTTGATTCAC+GGG + chr5_1:63405275-63405294 Msa0743260:intron 35.0%
ATGGAGAAAAGGACTTTAGA+TGG + chr5_1:63405298-63405317 Msa0743260:intron 35.0%
! TTTTCAATTCGTAGCCTCTT+TGG + chr5_1:63405393-63405412 Msa0743260:intron 35.0%
! TTGGTGAAAGCACAATGTAA+CGG + chr5_1:63405412-63405431 Msa0743260:intron 35.0%
!! TAACTTTTCAAGCATGCACT+TGG + chr5_1:63405442-63405461 Msa0743260:intron 35.0%
TGTCCAGTATAATCAAGGTA+CGG + chr5_1:63405496-63405515 Msa0743260:intron 35.0%
AATCAAGGTACGGAGAAAAT+TGG + chr5_1:63405506-63405525 Msa0743260:intron 35.0%
!! GGAGAAAATTGGTCTTTAGA+TGG + chr5_1:63405517-63405536 Msa0743260:intron 35.0%
! TGAGATGGTACATTTCCTTT+TGG + chr5_1:63405682-63405701 Msa0743260:intron 35.0%
TATTCTCTCAAGCAGACAAT+CGG - chr5_1:63405929-63405948 None:intergenic 35.0%
GCTTCATTCATTTCAGAAGT+TGG + chr5_1:63406063-63406082 Msa0743260:three_prime_UTR 35.0%
! ATAGTGGGAGTATGTGTTTA+AGG + chr5_1:63406089-63406108 Msa0743260:three_prime_UTR 35.0%
! TAGTGGGAGTATGTGTTTAA+GGG + chr5_1:63406090-63406109 Msa0743260:three_prime_UTR 35.0%
!! GGGAAATAAGTTGATGAAAG+GGG + chr5_1:63406110-63406129 Msa0743260:three_prime_UTR 35.0%
! GTTGATGAAAGGGGATTATT+TGG + chr5_1:63406119-63406138 Msa0743260:three_prime_UTR 35.0%
CTCTTCTCATTAGTATCACA+TGG + chr5_1:63406222-63406241 Msa0743260:three_prime_UTR 35.0%
ACACAAGAACATATGGTAAG+TGG + chr5_1:63406276-63406295 Msa0743260:three_prime_UTR 35.0%
ACAGTTACATTACACGTGGA+AGG - chr5_1:63403224-63403243 None:intergenic 40.0%
AGCTACAGTTACATTACACG+TGG - chr5_1:63403228-63403247 None:intergenic 40.0%
GAATGAATGAACGAACGTGT+AGG - chr5_1:63403254-63403273 None:intergenic 40.0%
GATTAGTAGGAAGATTAGCG+AGG - chr5_1:63403368-63403387 None:intergenic 40.0%
ATGCGATGATTCCGATTAGT+AGG - chr5_1:63403381-63403400 None:intergenic 40.0%
TTTCCAGTGCCAAAACTAAG+GGG + chr5_1:63403653-63403672 Msa0743260:intron 40.0%
! ATGAACAGACCCCTTAGTTT+TGG - chr5_1:63403665-63403684 None:intergenic 40.0%
! GGGTCTAAGATAAAAAGGGT+TGG + chr5_1:63403846-63403865 Msa0743260:intron 40.0%
TTGCTTACAGACTTCATGGA+AGG + chr5_1:63403897-63403916 Msa0743260:intron 40.0%
CTGACATAACTGATAGATCG+TGG + chr5_1:63403989-63404008 Msa0743260:intron 40.0%
GATCGTGGGAAAATGTGAAT+TGG + chr5_1:63404004-63404023 Msa0743260:intron 40.0%
AGCTTCTCGTTAGAGTTAGA+GGG - chr5_1:63404223-63404242 None:intergenic 40.0%
AAGCTTCTCGTTAGAGTTAG+AGG - chr5_1:63404224-63404243 None:intergenic 40.0%
CACAATTAGGCTTACTTCCT+TGG + chr5_1:63404415-63404434 Msa0743260:intron 40.0%
AAGTGATCAATACCTTGCCA+AGG - chr5_1:63404435-63404454 None:intergenic 40.0%
! GTTGTAACTTGTACGAGTGT+TGG - chr5_1:63404529-63404548 None:intergenic 40.0%
! GTGCAGTAGTATCATGGTTT+TGG - chr5_1:63404752-63404771 None:intergenic 40.0%
! TGACTTGTGCAGTAGTATCA+TGG - chr5_1:63404758-63404777 None:intergenic 40.0%
GAAAAATTCCCTACTTGCTC+AGG - chr5_1:63404870-63404889 None:intergenic 40.0%
! AGTAGGGAATTTTTCCACCA+CGG + chr5_1:63404875-63404894 Msa0743260:intron 40.0%
! TTTTGTCTACTTGTGAACCG+TGG - chr5_1:63404895-63404914 None:intergenic 40.0%
CGGCTAATAAAAATGATGGC+AGG - chr5_1:63405087-63405106 None:intergenic 40.0%
CTCATGTAAAACAGTGCAGA+CGG - chr5_1:63405107-63405126 None:intergenic 40.0%
GTCTGACAGCATATACTCTT+TGG - chr5_1:63405229-63405248 None:intergenic 40.0%
! ATCCCGTGAATCAAAGCATT+TGG - chr5_1:63405280-63405299 None:intergenic 40.0%
AAATGCTTTGATTCACGGGA+TGG + chr5_1:63405279-63405298 Msa0743260:intron 40.0%
CTTCGTTGAATCACAGCATT+TGG + chr5_1:63405339-63405358 Msa0743260:intron 40.0%
ACATTGTGCTTTCACCAAAG+AGG - chr5_1:63405410-63405429 None:intergenic 40.0%
! TGGTGAAAGCACAATGTAAC+GGG + chr5_1:63405413-63405432 Msa0743260:intron 40.0%
!!! GCATGCACTTGGTGTTTTTT+AGG + chr5_1:63405453-63405472 Msa0743260:intron 40.0%
TCTCCGTACCTTGATTATAC+TGG - chr5_1:63405502-63405521 None:intergenic 40.0%
! TACAAACACATTGCTTTGGG+TGG + chr5_1:63405545-63405564 Msa0743260:intron 40.0%
TCACAAGCTAGAACTAGTAC+CGG - chr5_1:63405710-63405729 None:intergenic 40.0%
TGAGGGAGAAGAAAAGAGTA+AGG - chr5_1:63405762-63405781 None:intergenic 40.0%
CACCAAGGTAAGCTTAATGA+GGG - chr5_1:63405779-63405798 None:intergenic 40.0%
ACACCAAGGTAAGCTTAATG+AGG - chr5_1:63405780-63405799 None:intergenic 40.0%
TCAAGATGGGAACTATGAGT+GGG - chr5_1:63405850-63405869 None:intergenic 40.0%
ATAGTTCCCATCTTGAGTGA+TGG + chr5_1:63405854-63405873 Msa0743260:CDS 40.0%
TATTCGCCATCACTCAAGAT+GGG - chr5_1:63405863-63405882 None:intergenic 40.0%
TTATTCGCCATCACTCAAGA+TGG - chr5_1:63405864-63405883 None:intergenic 40.0%
CTGCTTGAGAGAATATGACT+TGG + chr5_1:63405934-63405953 Msa0743260:three_prime_UTR 40.0%
! TGTGGATGGTTGGATTGGAT+TGG + chr5_1:63403588-63403607 Msa0743260:intron 45.0%
TTATCGACATCTTTCTGGGC+TGG + chr5_1:63404127-63404146 Msa0743260:intron 45.0%
TTAGGCTTACTTCCTTGGCA+AGG + chr5_1:63404420-63404439 Msa0743260:intron 45.0%
!! ATGTGTAGCACTGACACTTC+TGG + chr5_1:63404483-63404502 Msa0743260:intron 45.0%
ACATTGGCAGTCTGACAATG+TGG + chr5_1:63404547-63404566 Msa0743260:intron 45.0%
! ATGAAGCGCTTACACAGACA+AGG - chr5_1:63404644-63404663 None:intergenic 45.0%
TTGTCTGTGTAAGCGCTTCA+TGG + chr5_1:63404643-63404662 Msa0743260:intron 45.0%
ATAGTCATGCCTGAGCAAGT+AGG + chr5_1:63404858-63404877 Msa0743260:intron 45.0%
TAGTCATGCCTGAGCAAGTA+GGG + chr5_1:63404859-63404878 Msa0743260:intron 45.0%
TTGAACAAACACACGTGGAG+TGG + chr5_1:63405186-63405205 Msa0743260:intron 45.0%
!! AGCATATACTCTTTGGGACG+AGG - chr5_1:63405222-63405241 None:intergenic 45.0%
GGAAAGGGACTTGATTGTAC+TGG - chr5_1:63405259-63405278 None:intergenic 45.0%
TGATTCACGGGATGGAGAAA+AGG + chr5_1:63405287-63405306 Msa0743260:intron 45.0%
! AAACACATTGCTTTGGGTGG+AGG + chr5_1:63405548-63405567 Msa0743260:intron 45.0%
! AACACATTGCTTTGGGTGGA+GGG + chr5_1:63405549-63405568 Msa0743260:intron 45.0%
CGACACAAGGCAGACATATT+TGG - chr5_1:63405635-63405654 None:intergenic 45.0%
! GGTACATTTCCTTTTGGTCC+CGG + chr5_1:63405688-63405707 Msa0743260:intron 45.0%
CACAAGCTAGAACTAGTACC+GGG - chr5_1:63405709-63405728 None:intergenic 45.0%
AAGGTTATGCGCGACAAAAC+AGG - chr5_1:63405743-63405762 None:intergenic 45.0%
CTCCCTCATTAAGCTTACCT+TGG + chr5_1:63405774-63405793 Msa0743260:intron 45.0%
CTCAAGATGGGAACTATGAG+TGG - chr5_1:63405851-63405870 None:intergenic 45.0%
GGCGCATACAGATTAGCAGA+AGG - chr5_1:63403436-63403455 None:intergenic 50.0%
!!! AGACCCCTTAGTTTTGGCAC+TGG - chr5_1:63403659-63403678 None:intergenic 50.0%
GGGAGAACAGAGACACAACA+AGG - chr5_1:63404203-63404222 None:intergenic 50.0%
GTGTCAGTGCTACACATGTG+AGG - chr5_1:63404480-63404499 None:intergenic 50.0%
TGTCTACTTGTGAACCGTGG+TGG - chr5_1:63404892-63404911 None:intergenic 50.0%
! ACACATTGCTTTGGGTGGAG+GGG + chr5_1:63405550-63405569 Msa0743260:intron 50.0%
! GAACTAGTACCGGGACCAAA+AGG - chr5_1:63405700-63405719 None:intergenic 50.0%
CAGGTGGGCGATTGTATATC+TGG + chr5_1:63405814-63405833 Msa0743260:intron 50.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 63403211 63406315 63403211 ID=Msa0743260;Name=Msa0743260
chr5_1 mRNA 63403211 63406315 63403211 ID=Msa0743260-mRNA-1;Parent=Msa0743260;Name=Msa0743260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=138|1|1|1|0|0.33|3|432|70
chr5_1 exon 63403211 63403446 63403211 ID=Msa0743260-mRNA-1:exon:18720;Parent=Msa0743260-mRNA-1
chr5_1 exon 63404290 63404337 63404290 ID=Msa0743260-mRNA-1:exon:18721;Parent=Msa0743260-mRNA-1
chr5_1 exon 63405817 63406315 63405817 ID=Msa0743260-mRNA-1:exon:18722;Parent=Msa0743260-mRNA-1
chr5_1 five_prime_UTR 63403211 63403348 63403211 ID=Msa0743260-mRNA-1:five_prime_utr;Parent=Msa0743260-mRNA-1
chr5_1 CDS 63403349 63403446 63403349 ID=Msa0743260-mRNA-1:cds;Parent=Msa0743260-mRNA-1
chr5_1 CDS 63404290 63404337 63404290 ID=Msa0743260-mRNA-1:cds;Parent=Msa0743260-mRNA-1
chr5_1 CDS 63405817 63405883 63405817 ID=Msa0743260-mRNA-1:cds;Parent=Msa0743260-mRNA-1
chr5_1 three_prime_UTR 63405884 63406315 63405884 ID=Msa0743260-mRNA-1:three_prime_utr;Parent=Msa0743260-mRNA-1
Gene Sequence

>Msa0743260

ATGGGTTTCGTTGTTACCTCGCTAATCTTCCTACTAATCGGAATCATCGCATGCCTTTCTACAAGAATTTGCTTCAACAAAGGACCTTCTGCTAATCTATTTCACCTAACTTTGGTTCTTACATCAACAATATGCTGCTGGATGATGTGGGCGATTGTATATCTGGCACAGATGAACCCACTCATAGTTCCCATCTTGAGTGATGGCGAATAA

Protein sequence

>Msa0743260

MGFVVTSLIFLLIGIIACLSTRICFNKGPSANLFHLTLVLTSTICCWMMWAIVYLAQMNPLIVPILSDGE*