Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204020 | XP_013457421.1 | 85.906 | 447 | 34 | 2 | 1 | 419 | 1 | 446 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204020 | sp|Q9FH97|EPS1_ARATH | 35.794 | 447 | 231 | 10 | 2 | 414 | 3 | 427 | 2.99e-84 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007990 | Msa1204020 | 0.810882 | 9.239750e-51 | -8.615850e-47 |
| Msa0632370 | Msa1204020 | 0.800188 | 1.620671e-48 | -8.615850e-47 |
| Msa0715420 | Msa1204020 | 0.817965 | 2.507723e-52 | -8.615850e-47 |
| Msa0149300 | Msa1204020 | 0.809695 | 1.665916e-50 | -8.615850e-47 |
| Msa0204840 | Msa1204020 | 0.824253 | 8.922891e-54 | -8.615850e-47 |
| Msa0405130 | Msa1204020 | 0.801452 | 8.944347e-49 | -8.615850e-47 |
| Msa1080960 | Msa1204020 | 0.805563 | 1.256910e-49 | -8.615850e-47 |
| Msa1185110 | Msa1204020 | 0.805042 | 1.615601e-49 | -8.615850e-47 |
| Msa1204020 | Msa1256200 | 0.883340 | 4.875462e-71 | -8.615850e-47 |
| Msa1204020 | Msa1277150 | 0.811327 | 7.400434e-51 | -8.615850e-47 |
| Msa1204020 | Msa1365610 | 0.803052 | 4.190235e-49 | -8.615850e-47 |
| Msa0521670 | Msa1204020 | 0.808401 | 3.154443e-50 | -8.615850e-47 |
| Msa0857220 | Msa1204020 | 0.800443 | 1.437980e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204020 | MtrunA17_Chr4g0053081 | 85.906 | 447 | 34 | 2 | 1 | 419 | 1 | 446 | 0.0 | 783 |
| Msa1204020 | MtrunA17_Chr4g0053091 | 75.938 | 453 | 59 | 5 | 1 | 420 | 1 | 436 | 0.0 | 662 |
| Msa1204020 | MtrunA17_Chr4g0053111 | 55.286 | 454 | 154 | 10 | 1 | 415 | 1 | 444 | 4.25e-165 | 471 |
| Msa1204020 | MtrunA17_Chr8g0354371 | 53.571 | 448 | 164 | 8 | 1 | 415 | 1 | 437 | 8.93e-160 | 457 |
| Msa1204020 | MtrunA17_Chr8g0374641 | 53.933 | 445 | 161 | 10 | 1 | 410 | 1 | 436 | 1.86e-153 | 441 |
| Msa1204020 | MtrunA17_Chr8g0359251 | 52.339 | 449 | 169 | 9 | 1 | 415 | 1 | 438 | 4.16e-153 | 441 |
| Msa1204020 | MtrunA17_Chr4g0053061 | 51.435 | 453 | 167 | 11 | 1 | 411 | 29 | 470 | 4.29e-150 | 434 |
| Msa1204020 | MtrunA17_Chr8g0374911 | 51.656 | 453 | 166 | 11 | 1 | 411 | 22 | 463 | 8.39e-150 | 433 |
| Msa1204020 | MtrunA17_Chr4g0010331 | 51.339 | 448 | 168 | 8 | 1 | 415 | 1 | 431 | 1.67e-149 | 431 |
| Msa1204020 | MtrunA17_Chr4g0010121 | 51.893 | 449 | 166 | 10 | 1 | 411 | 40 | 476 | 6.18e-147 | 426 |
| Msa1204020 | MtrunA17_Chr4g0010381 | 50.110 | 453 | 171 | 9 | 1 | 415 | 1 | 436 | 2.25e-146 | 423 |
| Msa1204020 | MtrunA17_Chr4g0010311 | 48.899 | 454 | 176 | 8 | 1 | 415 | 1 | 437 | 1.70e-143 | 416 |
| Msa1204020 | MtrunA17_Chr3g0125001 | 49.888 | 447 | 174 | 9 | 1 | 415 | 1 | 429 | 6.58e-143 | 414 |
| Msa1204020 | MtrunA17_Chr4g0010361 | 49.670 | 455 | 172 | 9 | 1 | 415 | 1 | 438 | 2.27e-142 | 413 |
| Msa1204020 | MtrunA17_Chr3g0087221 | 48.156 | 461 | 176 | 9 | 1 | 415 | 1 | 444 | 4.64e-141 | 410 |
| Msa1204020 | MtrunA17_Chr7g0224131 | 47.797 | 454 | 178 | 9 | 1 | 415 | 1 | 434 | 4.68e-136 | 397 |
| Msa1204020 | MtrunA17_Chr4g0010351 | 50.128 | 391 | 165 | 7 | 1 | 378 | 1 | 374 | 7.57e-125 | 366 |
| Msa1204020 | MtrunA17_Chr3g0134041 | 38.152 | 422 | 216 | 8 | 32 | 415 | 30 | 444 | 1.34e-82 | 260 |
| Msa1204020 | MtrunA17_Chr3g0134071 | 40.731 | 383 | 201 | 9 | 28 | 392 | 26 | 400 | 1.64e-81 | 259 |
| Msa1204020 | MtrunA17_Chr3g0134121 | 35.065 | 462 | 240 | 10 | 3 | 419 | 5 | 451 | 5.60e-77 | 247 |
| Msa1204020 | MtrunA17_Chr3g0134091 | 35.307 | 456 | 236 | 10 | 3 | 414 | 5 | 445 | 2.61e-76 | 244 |
| Msa1204020 | MtrunA17_Chr3g0134111 | 36.977 | 430 | 221 | 8 | 28 | 415 | 26 | 447 | 4.43e-76 | 244 |
| Msa1204020 | MtrunA17_Chr8g0353891 | 53.812 | 223 | 91 | 5 | 1 | 220 | 1 | 214 | 8.81e-74 | 230 |
| Msa1204020 | MtrunA17_Chr6g0456591 | 48.387 | 217 | 98 | 4 | 1 | 216 | 15 | 218 | 9.41e-64 | 204 |
| Msa1204020 | MtrunA17_Chr3g0134061 | 34.527 | 391 | 212 | 9 | 32 | 392 | 28 | 404 | 2.28e-63 | 211 |
| Msa1204020 | MtrunA17_Chr4g0053071 | 70.748 | 147 | 15 | 1 | 302 | 420 | 1 | 147 | 2.29e-63 | 200 |
| Msa1204020 | MtrunA17_Chr3g0113181 | 31.957 | 460 | 239 | 9 | 22 | 419 | 23 | 470 | 3.52e-63 | 210 |
| Msa1204020 | MtrunA17_Chr3g0134101 | 33.489 | 427 | 225 | 9 | 28 | 415 | 42 | 448 | 7.41e-62 | 206 |
| Msa1204020 | MtrunA17_Chr8g0353901 | 49.057 | 212 | 73 | 3 | 234 | 414 | 20 | 227 | 3.62e-58 | 191 |
| Msa1204020 | MtrunA17_Chr5g0436621 | 28.778 | 483 | 248 | 8 | 22 | 420 | 17 | 487 | 2.45e-56 | 193 |
| Msa1204020 | MtrunA17_Chr4g0005941 | 30.600 | 500 | 239 | 12 | 3 | 415 | 5 | 483 | 2.87e-56 | 192 |
| Msa1204020 | MtrunA17_Chr7g0224121 | 54.487 | 156 | 66 | 2 | 37 | 192 | 31 | 181 | 3.38e-54 | 179 |
| Msa1204020 | MtrunA17_Chr6g0463321 | 45.918 | 196 | 69 | 3 | 199 | 392 | 1 | 161 | 1.87e-51 | 171 |
| Msa1204020 | MtrunA17_Chr6g0463331 | 58.475 | 118 | 48 | 1 | 75 | 192 | 45 | 161 | 1.12e-42 | 147 |
| Msa1204020 | MtrunA17_Chr4g0053051 | 55.039 | 129 | 30 | 1 | 320 | 420 | 4 | 132 | 1.62e-38 | 135 |
| Msa1204020 | MtrunA17_Chr6g0467861 | 25.855 | 468 | 251 | 12 | 23 | 417 | 62 | 506 | 1.42e-35 | 137 |
| Msa1204020 | MtrunA17_Chr3g0134131 | 26.131 | 398 | 173 | 8 | 15 | 409 | 19 | 298 | 1.89e-31 | 122 |
| Msa1204020 | MtrunA17_Chr7g0224101 | 48.062 | 129 | 53 | 2 | 213 | 331 | 12 | 136 | 8.43e-29 | 110 |
| Msa1204020 | MtrunA17_Chr3g0132001 | 27.907 | 387 | 218 | 16 | 18 | 366 | 3 | 366 | 1.18e-24 | 105 |
| Msa1204020 | MtrunA17_Chr4g0001861 | 25.788 | 349 | 217 | 14 | 64 | 392 | 56 | 382 | 4.91e-22 | 97.8 |
| Msa1204020 | MtrunA17_Chr8g0386141 | 28.387 | 310 | 190 | 11 | 57 | 352 | 52 | 343 | 7.79e-22 | 97.1 |
| Msa1204020 | MtrunA17_Chr8g0371821 | 24.928 | 345 | 222 | 13 | 64 | 392 | 56 | 379 | 2.92e-21 | 95.5 |
| Msa1204020 | MtrunA17_Chr4g0027071 | 28.053 | 303 | 191 | 10 | 64 | 355 | 69 | 355 | 4.80e-20 | 92.0 |
| Msa1204020 | MtrunA17_Chr2g0334001 | 26.894 | 264 | 159 | 10 | 64 | 313 | 56 | 299 | 1.60e-19 | 90.1 |
| Msa1204020 | MtrunA17_Chr3g0087401 | 23.599 | 339 | 217 | 8 | 38 | 352 | 28 | 348 | 6.26e-19 | 88.6 |
| Msa1204020 | MtrunA17_Chr1g0165671 | 24.390 | 328 | 211 | 11 | 33 | 341 | 41 | 350 | 4.50e-18 | 86.3 |
| Msa1204020 | MtrunA17_Chr3g0113821 | 24.928 | 345 | 222 | 11 | 29 | 352 | 23 | 351 | 9.84e-18 | 84.7 |
| Msa1204020 | MtrunA17_Chr1g0191081 | 23.765 | 324 | 207 | 10 | 32 | 333 | 31 | 336 | 8.42e-17 | 82.0 |
| Msa1204020 | MtrunA17_Chr4g0054081 | 23.934 | 305 | 199 | 9 | 64 | 352 | 65 | 352 | 1.96e-16 | 80.9 |
| Msa1204020 | MtrunA17_Chr7g0224391 | 25.784 | 287 | 187 | 11 | 52 | 327 | 56 | 327 | 7.82e-16 | 79.0 |
| Msa1204020 | MtrunA17_Chr7g0219331 | 23.573 | 403 | 247 | 16 | 30 | 392 | 119 | 500 | 2.02e-15 | 78.2 |
| Msa1204020 | MtrunA17_Chr7g0253501 | 23.473 | 311 | 209 | 8 | 61 | 351 | 52 | 353 | 2.15e-15 | 77.8 |
| Msa1204020 | MtrunA17_Chr7g0252731 | 25.784 | 287 | 180 | 8 | 52 | 322 | 58 | 327 | 3.18e-15 | 77.0 |
| Msa1204020 | MtrunA17_Chr7g0253531 | 26.374 | 273 | 171 | 9 | 64 | 316 | 55 | 317 | 4.87e-15 | 76.6 |
| Msa1204020 | MtrunA17_Chr8g0376901 | 23.274 | 391 | 239 | 13 | 33 | 392 | 17 | 377 | 6.82e-15 | 76.3 |
| Msa1204020 | MtrunA17_Chr4g0072041 | 23.026 | 304 | 202 | 9 | 64 | 352 | 70 | 356 | 1.07e-14 | 75.9 |
| Msa1204020 | MtrunA17_Chr1g0165661 | 23.051 | 295 | 198 | 10 | 48 | 329 | 45 | 323 | 1.55e-14 | 75.1 |
| Msa1204020 | MtrunA17_Chr7g0219301 | 23.940 | 401 | 244 | 16 | 32 | 392 | 28 | 407 | 2.87e-14 | 75.1 |
| Msa1204020 | MtrunA17_Chr2g0311401 | 23.320 | 253 | 174 | 7 | 154 | 392 | 5 | 251 | 3.20e-14 | 73.2 |
| Msa1204020 | MtrunA17_Chr7g0224111 | 43.902 | 82 | 38 | 2 | 339 | 415 | 1 | 79 | 5.66e-14 | 67.0 |
| Msa1204020 | MtrunA17_Chr2g0278481 | 26.255 | 259 | 155 | 11 | 64 | 313 | 74 | 305 | 1.05e-13 | 72.8 |
| Msa1204020 | MtrunA17_Chr2g0323511 | 26.464 | 427 | 233 | 20 | 22 | 392 | 29 | 430 | 1.72e-13 | 72.0 |
| Msa1204020 | MtrunA17_Chr3g0087901 | 25.000 | 380 | 226 | 17 | 4 | 343 | 8 | 368 | 4.48e-13 | 70.9 |
| Msa1204020 | MtrunA17_Chr3g0123061 | 25.503 | 298 | 183 | 13 | 64 | 356 | 61 | 324 | 7.77e-13 | 69.7 |
| Msa1204020 | MtrunA17_Chr7g0235531 | 22.118 | 321 | 210 | 11 | 64 | 361 | 58 | 361 | 9.56e-13 | 69.7 |
| Msa1204020 | MtrunA17_Chr8g0339641 | 24.519 | 416 | 242 | 16 | 29 | 392 | 23 | 418 | 1.04e-12 | 69.7 |
| Msa1204020 | MtrunA17_Chr1g0165681 | 23.659 | 317 | 206 | 11 | 33 | 329 | 23 | 323 | 1.06e-12 | 69.7 |
| Msa1204020 | MtrunA17_Chr2g0323501 | 24.518 | 363 | 230 | 15 | 64 | 392 | 73 | 425 | 1.80e-12 | 68.9 |
| Msa1204020 | MtrunA17_Chr3g0106691 | 25.763 | 295 | 179 | 10 | 59 | 334 | 109 | 382 | 7.27e-12 | 67.0 |
| Msa1204020 | MtrunA17_Chr6g0454761 | 24.747 | 396 | 220 | 16 | 37 | 392 | 45 | 402 | 2.30e-11 | 65.9 |
| Msa1204020 | MtrunA17_Chr6g0454761 | 23.881 | 268 | 171 | 9 | 151 | 392 | 630 | 890 | 2.30e-11 | 65.9 |
| Msa1204020 | MtrunA17_Chr7g0219881 | 24.000 | 375 | 221 | 14 | 58 | 392 | 58 | 408 | 3.24e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204020 | AT5G67150.1 | 38.326 | 454 | 230 | 9 | 2 | 417 | 3 | 444 | 9.14e-98 | 300 |
| Msa1204020 | AT3G50300.1 | 37.885 | 454 | 232 | 11 | 1 | 415 | 1 | 443 | 1.77e-90 | 281 |
| Msa1204020 | AT5G67160.1 | 35.794 | 447 | 231 | 10 | 2 | 414 | 3 | 427 | 3.04e-85 | 267 |
| Msa1204020 | AT3G50280.1 | 35.698 | 451 | 242 | 9 | 1 | 415 | 1 | 439 | 1.05e-83 | 263 |
| Msa1204020 | AT3G50270.1 | 34.658 | 453 | 244 | 13 | 5 | 417 | 6 | 446 | 1.04e-79 | 253 |
| Msa1204020 | AT5G38130.1 | 37.443 | 438 | 222 | 14 | 1 | 401 | 21 | 443 | 2.07e-79 | 253 |
| Msa1204020 | AT5G42830.1 | 34.038 | 426 | 229 | 9 | 32 | 415 | 30 | 445 | 6.34e-72 | 233 |
| Msa1204020 | AT5G07850.1 | 34.813 | 428 | 226 | 10 | 32 | 415 | 31 | 449 | 2.01e-71 | 232 |
| Msa1204020 | AT5G07860.1 | 34.491 | 432 | 218 | 12 | 32 | 415 | 31 | 445 | 1.58e-66 | 219 |
| Msa1204020 | AT2G39980.1 | 29.614 | 466 | 236 | 8 | 30 | 417 | 27 | 478 | 1.13e-61 | 207 |
| Msa1204020 | AT5G07870.1 | 33.257 | 439 | 226 | 11 | 32 | 415 | 31 | 457 | 1.67e-59 | 201 |
| Msa1204020 | AT3G50290.1 | 40.602 | 266 | 148 | 4 | 135 | 392 | 4 | 267 | 7.58e-58 | 191 |
| Msa1204020 | AT3G50280.2 | 36.334 | 311 | 163 | 5 | 138 | 415 | 1 | 309 | 1.43e-57 | 191 |
| Msa1204020 | AT5G01210.1 | 30.603 | 464 | 243 | 9 | 24 | 420 | 19 | 470 | 9.91e-57 | 194 |
| Msa1204020 | AT5G23940.1 | 29.930 | 431 | 250 | 10 | 32 | 416 | 25 | 449 | 2.29e-45 | 164 |
| Msa1204020 | AT2G40230.1 | 25.000 | 368 | 240 | 11 | 1 | 355 | 1 | 345 | 1.75e-20 | 93.6 |
| Msa1204020 | AT5G48930.1 | 24.786 | 351 | 218 | 14 | 64 | 392 | 56 | 382 | 8.01e-20 | 91.7 |
| Msa1204020 | AT5G41040.1 | 27.431 | 288 | 177 | 11 | 57 | 329 | 78 | 348 | 1.88e-19 | 90.5 |
| Msa1204020 | AT5G41040.2 | 27.431 | 288 | 177 | 11 | 57 | 329 | 62 | 332 | 2.19e-19 | 90.1 |
| Msa1204020 | AT2G19070.1 | 24.370 | 357 | 226 | 13 | 24 | 351 | 7 | 348 | 1.37e-18 | 87.8 |
| Msa1204020 | AT3G30280.1 | 25.937 | 347 | 217 | 16 | 7 | 341 | 4 | 322 | 1.51e-18 | 87.8 |
| Msa1204020 | AT3G48720.1 | 27.333 | 300 | 184 | 13 | 45 | 328 | 40 | 321 | 2.63e-18 | 87.0 |
| Msa1204020 | AT5G07080.1 | 27.508 | 309 | 180 | 12 | 42 | 327 | 44 | 331 | 3.68e-18 | 86.7 |
| Msa1204020 | AT3G29590.1 | 26.196 | 397 | 243 | 16 | 25 | 392 | 21 | 396 | 1.38e-17 | 84.7 |
| Msa1204020 | AT3G29670.1 | 23.077 | 416 | 274 | 15 | 3 | 392 | 2 | 397 | 2.44e-16 | 81.3 |
| Msa1204020 | AT3G47170.1 | 24.684 | 316 | 201 | 11 | 64 | 357 | 70 | 370 | 1.35e-15 | 79.0 |
| Msa1204020 | AT5G39080.1 | 23.645 | 406 | 245 | 17 | 30 | 392 | 26 | 409 | 2.43e-15 | 78.2 |
| Msa1204020 | AT1G65450.1 | 24.149 | 323 | 205 | 13 | 52 | 355 | 60 | 361 | 5.48e-15 | 77.0 |
| Msa1204020 | AT3G29635.1 | 22.750 | 400 | 250 | 16 | 29 | 392 | 26 | 402 | 9.50e-15 | 76.3 |
| Msa1204020 | AT5G39090.1 | 25.575 | 391 | 238 | 19 | 32 | 392 | 28 | 395 | 1.71e-14 | 75.5 |
| Msa1204020 | AT1G28680.2 | 23.746 | 299 | 203 | 9 | 64 | 352 | 62 | 345 | 2.29e-14 | 74.7 |
| Msa1204020 | AT1G28680.1 | 23.746 | 299 | 203 | 9 | 64 | 352 | 62 | 345 | 2.64e-14 | 74.7 |
| Msa1204020 | AT1G24430.1 | 24.345 | 267 | 164 | 9 | 54 | 313 | 52 | 287 | 1.70e-13 | 72.4 |
| Msa1204020 | AT3G03480.1 | 23.410 | 346 | 217 | 14 | 33 | 355 | 33 | 353 | 1.89e-13 | 72.4 |
| Msa1204020 | AT1G03940.1 | 26.426 | 333 | 191 | 16 | 58 | 354 | 60 | 374 | 1.04e-12 | 70.1 |
| Msa1204020 | AT5G39050.1 | 23.529 | 289 | 185 | 12 | 135 | 392 | 132 | 415 | 1.16e-12 | 69.7 |
| Msa1204020 | AT5G57840.1 | 24.451 | 319 | 202 | 10 | 64 | 364 | 56 | 353 | 2.09e-12 | 68.9 |
| Msa1204020 | AT2G25150.1 | 23.529 | 289 | 197 | 7 | 64 | 341 | 67 | 342 | 4.03e-12 | 68.2 |
| Msa1204020 | AT1G31490.1 | 25.256 | 293 | 161 | 13 | 61 | 338 | 59 | 308 | 4.33e-12 | 68.2 |
| Msa1204020 | AT1G03495.1 | 27.458 | 295 | 173 | 14 | 58 | 323 | 60 | 342 | 8.25e-12 | 66.6 |
| Msa1204020 | AT1G03390.1 | 23.611 | 360 | 228 | 15 | 51 | 387 | 61 | 396 | 1.58e-11 | 66.2 |
| Msa1204020 | AT5G61160.1 | 23.492 | 315 | 202 | 11 | 26 | 313 | 19 | 321 | 4.23e-11 | 65.1 |
| Msa1204020 | AT4G15400.1 | 27.143 | 280 | 159 | 14 | 49 | 313 | 41 | 290 | 5.68e-11 | 64.7 |
| Msa1204020 | AT1G78990.1 | 25.758 | 264 | 158 | 10 | 64 | 313 | 67 | 306 | 5.76e-11 | 64.7 |
Find 80 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCTTGACGAGGATTATTT+TGG | 0.141275 | 8_1:-59480522 | Msa1204020:CDS |
| AAGGAACATAGTTTGGTTTA+AGG | 0.151696 | 8_1:+59481069 | None:intergenic |
| TCTCCGAGGTTTGATGTTTA+TGG | 0.199950 | 8_1:-59480294 | Msa1204020:intron |
| GTAAAATGGAAAATTCTTTC+AGG | 0.213962 | 8_1:+59480738 | None:intergenic |
| CACATTCTGATGAGAAAATA+AGG | 0.214956 | 8_1:-59480401 | Msa1204020:CDS |
| CGTTGAAATGAAGGGAGTTT+TGG | 0.257934 | 8_1:+59480846 | None:intergenic |
| GATTTGAACATTCTCTGTTT+TGG | 0.269213 | 8_1:+59480671 | None:intergenic |
| GGGAAATGATGCTGAGTTCT+TGG | 0.295386 | 8_1:-59480127 | Msa1204020:CDS |
| TCAAATGGTGGATTTGGTTT+TGG | 0.300399 | 8_1:+59481264 | None:intergenic |
| GCCTGTTAAGGGTGGAAAAT+AGG | 0.317928 | 8_1:+59481217 | None:intergenic |
| ACGTAATGAAAATCTTCTTC+TGG | 0.318483 | 8_1:+59480579 | None:intergenic |
| GTTGTTTGGGATTAATAGTT+TGG | 0.327840 | 8_1:-59480346 | Msa1204020:CDS |
| TTTGTTTCAAATGGTGGATT+TGG | 0.337767 | 8_1:+59481258 | None:intergenic |
| ACTATAGAAGGAACATAGTT+TGG | 0.352065 | 8_1:+59481062 | None:intergenic |
| TGATGTGTTGTTGTTGTTTG+TGG | 0.358976 | 8_1:+59481166 | None:intergenic |
| CCACTTGAAACCATCCAAAA+AGG | 0.359472 | 8_1:-59481314 | Msa1204020:CDS |
| GATTATAAGACGGCCTGTTA+AGG | 0.359476 | 8_1:+59481205 | None:intergenic |
| TTTGAGATATTGGAGGCTTT+GGG | 0.368507 | 8_1:-59480147 | Msa1204020:CDS |
| ATTGGAAGTTCAACGTCGTT+TGG | 0.373841 | 8_1:+59480816 | None:intergenic |
| TTAGCTAATGGCATCTTCAT+AGG | 0.378743 | 8_1:-59480960 | Msa1204020:CDS |
| TTTGTGATGGCAAGATGTTT+TGG | 0.386713 | 8_1:-59480917 | Msa1204020:CDS |
| TTGAGAATGCCGAAGTTGTT+TGG | 0.387603 | 8_1:-59480360 | Msa1204020:CDS |
| CATTAGCTAACTCCGTTACT+TGG | 0.402418 | 8_1:+59480973 | None:intergenic |
| TTGGAAGTTCAACGTCGTTT+GGG | 0.408058 | 8_1:+59480817 | None:intergenic |
| TTTGGAAATGCAGGGATCAT+TGG | 0.408778 | 8_1:-59480504 | Msa1204020:CDS |
| TGAGAATGCCGAAGTTGTTT+GGG | 0.411706 | 8_1:-59480359 | Msa1204020:CDS |
| TTTGGCAGGTGCTAATTCAT+TGG | 0.414867 | 8_1:-59480328 | Msa1204020:CDS |
| TGGAAAGTGTTTGTTTCAAA+TGG | 0.417515 | 8_1:+59481249 | None:intergenic |
| TTTGGCATTTCGTCAATACT+TGG | 0.430278 | 8_1:-59480899 | Msa1204020:CDS |
| TTTGGTTTGGAATGGATTGA+TGG | 0.436388 | 8_1:+59481282 | None:intergenic |
| TTTGGGATTAATAGTTTGGC+AGG | 0.440696 | 8_1:-59480342 | Msa1204020:CDS |
| TGGGATTGGAAAATGTTCAT+TGG | 0.444512 | 8_1:-59480445 | Msa1204020:CDS |
| AAGCGTTGTTCTCTCATGTA+TGG | 0.446035 | 8_1:-59480632 | Msa1204020:CDS |
| TTTGTGAAAGGAAAGTGTAT+TGG | 0.453790 | 8_1:+59480798 | None:intergenic |
| GTAGTGTAACTATGAAAGTA+GGG | 0.457732 | 8_1:-59480482 | Msa1204020:CDS |
| TTGAGATTATTGTTGTCAAT+TGG | 0.459438 | 8_1:+59481392 | None:intergenic |
| GGTAGTGTAACTATGAAAGT+AGG | 0.460447 | 8_1:-59480483 | Msa1204020:CDS |
| ATTATAAGACGGCCTGTTAA+GGG | 0.469230 | 8_1:+59481206 | None:intergenic |
| GAATGGATTGATGGAAAAGA+AGG | 0.472695 | 8_1:+59481291 | None:intergenic |
| GGGAACCAACGTTGAAATGA+AGG | 0.474068 | 8_1:+59480837 | None:intergenic |
| GTTTGTGGCTACGTTGTGTT+GGG | 0.476915 | 8_1:+59481181 | None:intergenic |
| CAAGTAACGGAGTTAGCTAA+TGG | 0.482336 | 8_1:-59480972 | Msa1204020:CDS |
| ACCAAGGTTGTTGCAAATGA+TGG | 0.487314 | 8_1:+59481139 | None:intergenic |
| AAAGTGTTTGTTTCAAATGG+TGG | 0.488128 | 8_1:+59481252 | None:intergenic |
| GTTACTTGGACTGCTAGAAT+AGG | 0.498322 | 8_1:+59480987 | None:intergenic |
| TGTTTGTGGCTACGTTGTGT+TGG | 0.512319 | 8_1:+59481180 | None:intergenic |
| TTTGGATGGTTTCAAGTGGA+AGG | 0.513017 | 8_1:+59481318 | None:intergenic |
| CTCAACCACGTTGTTTGTGA+TGG | 0.514978 | 8_1:-59480930 | Msa1204020:CDS |
| GAGATTCTAGAATGTGGGAT+TGG | 0.518222 | 8_1:-59480459 | Msa1204020:CDS |
| TAGGGGAGATTCTAGAATGT+GGG | 0.520801 | 8_1:-59480464 | Msa1204020:CDS |
| TCCATCATTTGCAACAACCT+TGG | 0.522468 | 8_1:-59481140 | Msa1204020:CDS |
| TATTGTTGTCAATTGGTGCT+TGG | 0.527153 | 8_1:+59481399 | None:intergenic |
| GTAGGGGAGATTCTAGAATG+TGG | 0.529927 | 8_1:-59480465 | Msa1204020:CDS |
| ACATTCTGATGAGAAAATAA+GGG | 0.533534 | 8_1:-59480400 | Msa1204020:CDS |
| TCAAGCGGAGGAATCATCCT+TGG | 0.542679 | 8_1:+59480537 | None:intergenic |
| GATAATCGATTTAACACCAT+GGG | 0.544330 | 8_1:-59481351 | Msa1204020:CDS |
| AACTCCCTTCATTTCAACGT+TGG | 0.545872 | 8_1:-59480842 | Msa1204020:CDS |
| CTTTCAGGTAAGTTCTGCGT+CGG | 0.565322 | 8_1:+59480753 | None:intergenic |
| GGAACCAACGTTGAAATGAA+GGG | 0.576282 | 8_1:+59480838 | None:intergenic |
| GTGTTTGCAGGAGCTGAAGA+AGG | 0.577173 | 8_1:-59480198 | Msa1204020:intron |
| CTATTAATCCCAAACAACTT+CGG | 0.578183 | 8_1:+59480351 | None:intergenic |
| TCTCTTCGTCCACGCAAAAG+CGG | 0.578199 | 8_1:-59481114 | Msa1204020:CDS |
| CCAAAATAATCCTCGTCAAG+CGG | 0.581464 | 8_1:+59480522 | None:intergenic |
| TAAGGGATGATTATGAGTGT+TGG | 0.592031 | 8_1:-59480383 | Msa1204020:CDS |
| TAGTTATAGGTGTTAGACCA+AGG | 0.600032 | 8_1:-59480554 | Msa1204020:CDS |
| GGAAGGAATTGAAGATCCCA+TGG | 0.614918 | 8_1:+59481335 | None:intergenic |
| TATTCTAGCAGTCCAAGTAA+CGG | 0.629197 | 8_1:-59480985 | Msa1204020:CDS |
| TGTGTTGGGTGATTATAAGA+CGG | 0.629490 | 8_1:+59481195 | None:intergenic |
| GATGATTCCTCCGCTTGACG+AGG | 0.630798 | 8_1:-59480532 | Msa1204020:CDS |
| AAATAATCCTCGTCAAGCGG+AGG | 0.636490 | 8_1:+59480525 | None:intergenic |
| AGATAATCGATTTAACACCA+TGG | 0.645348 | 8_1:-59481352 | Msa1204020:CDS |
| TGCTAGAATAGGTTGTGAAG+TGG | 0.647856 | 8_1:+59480998 | None:intergenic |
| ATAAGACGGCCTGTTAAGGG+TGG | 0.648919 | 8_1:+59481209 | None:intergenic |
| ACTAGTTGAGATCACTGTGA+TGG | 0.656954 | 8_1:+59481427 | None:intergenic |
| TGGAAAATAGGAGAGTGTTG+TGG | 0.662672 | 8_1:+59481229 | None:intergenic |
| TAGTGTAACTATGAAAGTAG+GGG | 0.674189 | 8_1:-59480481 | Msa1204020:CDS |
| TTACCATAAACATCAAACCT+CGG | 0.674952 | 8_1:+59480291 | None:intergenic |
| TGGCTACGAGTAGTTCTCCG+AGG | 0.676435 | 8_1:-59480308 | Msa1204020:CDS |
| CGTGGACGAAGAGAGCACCA+AGG | 0.726493 | 8_1:+59481123 | None:intergenic |
| TCTTGCCATCACAAACAACG+TGG | 0.787958 | 8_1:+59480925 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAATTTTCCATTTTACAA+AGG | - | chr8_1:59480811-59480830 | Msa1204020:CDS | 20.0% |
| !!! | TTTCATTACGTTTTAGTTAT+AGG | - | chr8_1:59480977-59480996 | Msa1204020:CDS | 20.0% |
| !!! | AAGAATTTTCCATTTTACAA+AGG | - | chr8_1:59480811-59480830 | Msa1204020:CDS | 20.0% |
| !!! | TTTCATTACGTTTTAGTTAT+AGG | - | chr8_1:59480977-59480996 | Msa1204020:CDS | 20.0% |
| ! | TTGAGATTATTGTTGTCAAT+TGG | + | chr8_1:59480155-59480174 | None:intergenic | 25.0% |
| ! | AAAAATGAGTGAACTATAGA+AGG | + | chr8_1:59480497-59480516 | None:intergenic | 25.0% |
| ! | GTAAAATGGAAAATTCTTTC+AGG | + | chr8_1:59480809-59480828 | None:intergenic | 25.0% |
| ! | ACATTCTGATGAGAAAATAA+GGG | - | chr8_1:59481144-59481163 | Msa1204020:CDS | 25.0% |
| !!! | GATGTTTATGGTAATGATTT+TGG | - | chr8_1:59481262-59481281 | Msa1204020:CDS | 25.0% |
| !!! | TTTATGGTAATGATTTTGGT+TGG | - | chr8_1:59481266-59481285 | Msa1204020:CDS | 25.0% |
| !!! | TTATGGTAATGATTTTGGTT+GGG | - | chr8_1:59481267-59481286 | Msa1204020:CDS | 25.0% |
| !!! | TTGTCTTTCTTTTGAGATAT+TGG | - | chr8_1:59481387-59481406 | Msa1204020:CDS | 25.0% |
| ! | TTGAGATTATTGTTGTCAAT+TGG | + | chr8_1:59480155-59480174 | None:intergenic | 25.0% |
| ! | AAAAATGAGTGAACTATAGA+AGG | + | chr8_1:59480497-59480516 | None:intergenic | 25.0% |
| ! | GTAAAATGGAAAATTCTTTC+AGG | + | chr8_1:59480809-59480828 | None:intergenic | 25.0% |
| ! | ACATTCTGATGAGAAAATAA+GGG | - | chr8_1:59481144-59481163 | Msa1204020:CDS | 25.0% |
| !!! | GATGTTTATGGTAATGATTT+TGG | - | chr8_1:59481262-59481281 | Msa1204020:CDS | 25.0% |
| !!! | TTTATGGTAATGATTTTGGT+TGG | - | chr8_1:59481266-59481285 | Msa1204020:CDS | 25.0% |
| !!! | TTATGGTAATGATTTTGGTT+GGG | - | chr8_1:59481267-59481286 | Msa1204020:CDS | 25.0% |
| !!! | TTGTCTTTCTTTTGAGATAT+TGG | - | chr8_1:59481387-59481406 | Msa1204020:CDS | 25.0% |
| ! | AGATAATCGATTTAACACCA+TGG | - | chr8_1:59480192-59480211 | Msa1204020:intron | 30.0% |
| ! | GATAATCGATTTAACACCAT+GGG | - | chr8_1:59480193-59480212 | Msa1204020:intron | 30.0% |
| !! | TTTGTTTCAAATGGTGGATT+TGG | + | chr8_1:59480289-59480308 | None:intergenic | 30.0% |
| ! | AAAGTGTTTGTTTCAAATGG+TGG | + | chr8_1:59480295-59480314 | None:intergenic | 30.0% |
| !! | TGGAAAGTGTTTGTTTCAAA+TGG | + | chr8_1:59480298-59480317 | None:intergenic | 30.0% |
| ! | AAGGAACATAGTTTGGTTTA+AGG | + | chr8_1:59480478-59480497 | None:intergenic | 30.0% |
| ACTATAGAAGGAACATAGTT+TGG | + | chr8_1:59480485-59480504 | None:intergenic | 30.0% | |
| !! | AGTTTTTAACTCCGTTAAGT+GGG | + | chr8_1:59480520-59480539 | None:intergenic | 30.0% |
| !! | TAGTTTTTAACTCCGTTAAG+TGG | + | chr8_1:59480521-59480540 | None:intergenic | 30.0% |
| ! | TTTGTGAAAGGAAAGTGTAT+TGG | + | chr8_1:59480749-59480768 | None:intergenic | 30.0% |
| ! | CGATTTTCTCCTTTGTAAAA+TGG | + | chr8_1:59480823-59480842 | None:intergenic | 30.0% |
| ! | TTTTACAAAGGAGAAAATCG+CGG | - | chr8_1:59480823-59480842 | Msa1204020:CDS | 30.0% |
| ! | GATTTGAACATTCTCTGTTT+TGG | + | chr8_1:59480876-59480895 | None:intergenic | 30.0% |
| ACGTAATGAAAATCTTCTTC+TGG | + | chr8_1:59480968-59480987 | None:intergenic | 30.0% | |
| !!! | AGGATTATTTTGGAAATGCA+GGG | - | chr8_1:59481032-59481051 | Msa1204020:CDS | 30.0% |
| GTAGTGTAACTATGAAAGTA+GGG | - | chr8_1:59481062-59481081 | Msa1204020:CDS | 30.0% | |
| TAGTGTAACTATGAAAGTAG+GGG | - | chr8_1:59481063-59481082 | Msa1204020:CDS | 30.0% | |
| CACATTCTGATGAGAAAATA+AGG | - | chr8_1:59481143-59481162 | Msa1204020:CDS | 30.0% | |
| CTATTAATCCCAAACAACTT+CGG | + | chr8_1:59481196-59481215 | None:intergenic | 30.0% | |
| ! | GTTGTTTGGGATTAATAGTT+TGG | - | chr8_1:59481198-59481217 | Msa1204020:CDS | 30.0% |
| TTACCATAAACATCAAACCT+CGG | + | chr8_1:59481256-59481275 | None:intergenic | 30.0% | |
| !!! | TATGGTAATGATTTTGGTTG+GGG | - | chr8_1:59481268-59481287 | Msa1204020:CDS | 30.0% |
| GGAGTGCAAATAAAAGTAAT+GGG | - | chr8_1:59481314-59481333 | Msa1204020:CDS | 30.0% | |
| !!! | TCTTTCTTTTGAGATATTGG+AGG | - | chr8_1:59481390-59481409 | Msa1204020:CDS | 30.0% |
| ! | AGATAATCGATTTAACACCA+TGG | - | chr8_1:59480192-59480211 | Msa1204020:intron | 30.0% |
| ! | GATAATCGATTTAACACCAT+GGG | - | chr8_1:59480193-59480212 | Msa1204020:intron | 30.0% |
| !! | TTTGTTTCAAATGGTGGATT+TGG | + | chr8_1:59480289-59480308 | None:intergenic | 30.0% |
| ! | AAAGTGTTTGTTTCAAATGG+TGG | + | chr8_1:59480295-59480314 | None:intergenic | 30.0% |
| !! | TGGAAAGTGTTTGTTTCAAA+TGG | + | chr8_1:59480298-59480317 | None:intergenic | 30.0% |
| ! | AAGGAACATAGTTTGGTTTA+AGG | + | chr8_1:59480478-59480497 | None:intergenic | 30.0% |
| ACTATAGAAGGAACATAGTT+TGG | + | chr8_1:59480485-59480504 | None:intergenic | 30.0% | |
| !! | AGTTTTTAACTCCGTTAAGT+GGG | + | chr8_1:59480520-59480539 | None:intergenic | 30.0% |
| !! | TAGTTTTTAACTCCGTTAAG+TGG | + | chr8_1:59480521-59480540 | None:intergenic | 30.0% |
| ! | TTTGTGAAAGGAAAGTGTAT+TGG | + | chr8_1:59480749-59480768 | None:intergenic | 30.0% |
| ! | CGATTTTCTCCTTTGTAAAA+TGG | + | chr8_1:59480823-59480842 | None:intergenic | 30.0% |
| ! | TTTTACAAAGGAGAAAATCG+CGG | - | chr8_1:59480823-59480842 | Msa1204020:CDS | 30.0% |
| ! | GATTTGAACATTCTCTGTTT+TGG | + | chr8_1:59480876-59480895 | None:intergenic | 30.0% |
| ACGTAATGAAAATCTTCTTC+TGG | + | chr8_1:59480968-59480987 | None:intergenic | 30.0% | |
| !!! | AGGATTATTTTGGAAATGCA+GGG | - | chr8_1:59481032-59481051 | Msa1204020:CDS | 30.0% |
| GTAGTGTAACTATGAAAGTA+GGG | - | chr8_1:59481062-59481081 | Msa1204020:CDS | 30.0% | |
| TAGTGTAACTATGAAAGTAG+GGG | - | chr8_1:59481063-59481082 | Msa1204020:CDS | 30.0% | |
| CACATTCTGATGAGAAAATA+AGG | - | chr8_1:59481143-59481162 | Msa1204020:CDS | 30.0% | |
| CTATTAATCCCAAACAACTT+CGG | + | chr8_1:59481196-59481215 | None:intergenic | 30.0% | |
| ! | GTTGTTTGGGATTAATAGTT+TGG | - | chr8_1:59481198-59481217 | Msa1204020:CDS | 30.0% |
| TTACCATAAACATCAAACCT+CGG | + | chr8_1:59481256-59481275 | None:intergenic | 30.0% | |
| !!! | TATGGTAATGATTTTGGTTG+GGG | - | chr8_1:59481268-59481287 | Msa1204020:CDS | 30.0% |
| GGAGTGCAAATAAAAGTAAT+GGG | - | chr8_1:59481314-59481333 | Msa1204020:CDS | 30.0% | |
| !!! | TCTTTCTTTTGAGATATTGG+AGG | - | chr8_1:59481390-59481409 | Msa1204020:CDS | 30.0% |
| ! | TATTGTTGTCAATTGGTGCT+TGG | + | chr8_1:59480148-59480167 | None:intergenic | 35.0% |
| !! | GAATGGATTGATGGAAAAGA+AGG | + | chr8_1:59480256-59480275 | None:intergenic | 35.0% |
| !! | TTTGGTTTGGAATGGATTGA+TGG | + | chr8_1:59480265-59480284 | None:intergenic | 35.0% |
| !!! | GATTTGGTTTTGGTTTGGAA+TGG | + | chr8_1:59480273-59480292 | None:intergenic | 35.0% |
| !!! | TCAAATGGTGGATTTGGTTT+TGG | + | chr8_1:59480283-59480302 | None:intergenic | 35.0% |
| ATTATAAGACGGCCTGTTAA+GGG | + | chr8_1:59480341-59480360 | None:intergenic | 35.0% | |
| TGTGTTGGGTGATTATAAGA+CGG | + | chr8_1:59480352-59480371 | None:intergenic | 35.0% | |
| !! | TGATGTGTTGTTGTTGTTTG+TGG | + | chr8_1:59480381-59480400 | None:intergenic | 35.0% |
| !! | CACTCATTTTTCCCACTTAA+CGG | - | chr8_1:59480506-59480525 | Msa1204020:CDS | 35.0% |
| TATTCTAGCAGTCCAAGTAA+CGG | - | chr8_1:59480559-59480578 | Msa1204020:CDS | 35.0% | |
| TTAGCTAATGGCATCTTCAT+AGG | - | chr8_1:59480584-59480603 | Msa1204020:CDS | 35.0% | |
| ! | TTTGTGATGGCAAGATGTTT+TGG | - | chr8_1:59480627-59480646 | Msa1204020:CDS | 35.0% |
| TTTGGCATTTCGTCAATACT+TGG | - | chr8_1:59480645-59480664 | Msa1204020:CDS | 35.0% | |
| !!! | TGTGATTCGGTTTTTGTGAA+AGG | + | chr8_1:59480761-59480780 | None:intergenic | 35.0% |
| ! | CGGTTTTCTACATTGTGATT+CGG | + | chr8_1:59480774-59480793 | None:intergenic | 35.0% |
| TAGTTATAGGTGTTAGACCA+AGG | - | chr8_1:59480990-59481009 | Msa1204020:CDS | 35.0% | |
| !!! | GAGGATTATTTTGGAAATGC+AGG | - | chr8_1:59481031-59481050 | Msa1204020:CDS | 35.0% |
| GGTAGTGTAACTATGAAAGT+AGG | - | chr8_1:59481061-59481080 | Msa1204020:CDS | 35.0% | |
| TGGGATTGGAAAATGTTCAT+TGG | - | chr8_1:59481099-59481118 | Msa1204020:CDS | 35.0% | |
| TAAGGGATGATTATGAGTGT+TGG | - | chr8_1:59481161-59481180 | Msa1204020:CDS | 35.0% | |
| ! | TTTGGGATTAATAGTTTGGC+AGG | - | chr8_1:59481202-59481221 | Msa1204020:CDS | 35.0% |
| !!! | ATGGTAATGATTTTGGTTGG+GGG | - | chr8_1:59481269-59481288 | Msa1204020:CDS | 35.0% |
| ! | GGGAGTGCAAATAAAAGTAA+TGG | - | chr8_1:59481313-59481332 | Msa1204020:CDS | 35.0% |
| !!! | TTTTGAGATATTGGAGGCTT+TGG | - | chr8_1:59481396-59481415 | Msa1204020:CDS | 35.0% |
| ! | TTTGAGATATTGGAGGCTTT+GGG | - | chr8_1:59481397-59481416 | Msa1204020:CDS | 35.0% |
| ! | TATTGTTGTCAATTGGTGCT+TGG | + | chr8_1:59480148-59480167 | None:intergenic | 35.0% |
| !! | GAATGGATTGATGGAAAAGA+AGG | + | chr8_1:59480256-59480275 | None:intergenic | 35.0% |
| !! | TTTGGTTTGGAATGGATTGA+TGG | + | chr8_1:59480265-59480284 | None:intergenic | 35.0% |
| !!! | GATTTGGTTTTGGTTTGGAA+TGG | + | chr8_1:59480273-59480292 | None:intergenic | 35.0% |
| !!! | TCAAATGGTGGATTTGGTTT+TGG | + | chr8_1:59480283-59480302 | None:intergenic | 35.0% |
| ATTATAAGACGGCCTGTTAA+GGG | + | chr8_1:59480341-59480360 | None:intergenic | 35.0% | |
| TGTGTTGGGTGATTATAAGA+CGG | + | chr8_1:59480352-59480371 | None:intergenic | 35.0% | |
| !! | TGATGTGTTGTTGTTGTTTG+TGG | + | chr8_1:59480381-59480400 | None:intergenic | 35.0% |
| !! | CACTCATTTTTCCCACTTAA+CGG | - | chr8_1:59480506-59480525 | Msa1204020:CDS | 35.0% |
| TATTCTAGCAGTCCAAGTAA+CGG | - | chr8_1:59480559-59480578 | Msa1204020:CDS | 35.0% | |
| TTAGCTAATGGCATCTTCAT+AGG | - | chr8_1:59480584-59480603 | Msa1204020:CDS | 35.0% | |
| ! | TTTGTGATGGCAAGATGTTT+TGG | - | chr8_1:59480627-59480646 | Msa1204020:CDS | 35.0% |
| TTTGGCATTTCGTCAATACT+TGG | - | chr8_1:59480645-59480664 | Msa1204020:CDS | 35.0% | |
| !!! | TGTGATTCGGTTTTTGTGAA+AGG | + | chr8_1:59480761-59480780 | None:intergenic | 35.0% |
| ! | CGGTTTTCTACATTGTGATT+CGG | + | chr8_1:59480774-59480793 | None:intergenic | 35.0% |
| TAGTTATAGGTGTTAGACCA+AGG | - | chr8_1:59480990-59481009 | Msa1204020:CDS | 35.0% | |
| !!! | GAGGATTATTTTGGAAATGC+AGG | - | chr8_1:59481031-59481050 | Msa1204020:CDS | 35.0% |
| GGTAGTGTAACTATGAAAGT+AGG | - | chr8_1:59481061-59481080 | Msa1204020:CDS | 35.0% | |
| TGGGATTGGAAAATGTTCAT+TGG | - | chr8_1:59481099-59481118 | Msa1204020:CDS | 35.0% | |
| TAAGGGATGATTATGAGTGT+TGG | - | chr8_1:59481161-59481180 | Msa1204020:CDS | 35.0% | |
| ! | TTTGGGATTAATAGTTTGGC+AGG | - | chr8_1:59481202-59481221 | Msa1204020:CDS | 35.0% |
| !!! | ATGGTAATGATTTTGGTTGG+GGG | - | chr8_1:59481269-59481288 | Msa1204020:CDS | 35.0% |
| ! | GGGAGTGCAAATAAAAGTAA+TGG | - | chr8_1:59481313-59481332 | Msa1204020:CDS | 35.0% |
| !!! | TTTTGAGATATTGGAGGCTT+TGG | - | chr8_1:59481396-59481415 | Msa1204020:CDS | 35.0% |
| ! | TTTGAGATATTGGAGGCTTT+GGG | - | chr8_1:59481397-59481416 | Msa1204020:CDS | 35.0% |
| ACTAGTTGAGATCACTGTGA+TGG | + | chr8_1:59480120-59480139 | None:intergenic | 40.0% | |
| ! | TTTGGATGGTTTCAAGTGGA+AGG | + | chr8_1:59480229-59480248 | None:intergenic | 40.0% |
| ! | CCTTTTTGGATGGTTTCAAG+TGG | + | chr8_1:59480233-59480252 | None:intergenic | 40.0% |
| CCACTTGAAACCATCCAAAA+AGG | - | chr8_1:59480230-59480249 | Msa1204020:intron | 40.0% | |
| ! | GAAAAGAAGGCCTTTTTGGA+TGG | + | chr8_1:59480243-59480262 | None:intergenic | 40.0% |
| ! | GATGGAAAAGAAGGCCTTTT+TGG | + | chr8_1:59480247-59480266 | None:intergenic | 40.0% |
| !!! | TGGTGGATTTGGTTTTGGTT+TGG | + | chr8_1:59480278-59480297 | None:intergenic | 40.0% |
| !! | TGGAAAATAGGAGAGTGTTG+TGG | + | chr8_1:59480318-59480337 | None:intergenic | 40.0% |
| ! | TCCTATTTTCCACCCTTAAC+AGG | - | chr8_1:59480326-59480345 | Msa1204020:CDS | 40.0% |
| GATTATAAGACGGCCTGTTA+AGG | + | chr8_1:59480342-59480361 | None:intergenic | 40.0% | |
| TCCATCATTTGCAACAACCT+TGG | - | chr8_1:59480404-59480423 | Msa1204020:CDS | 40.0% | |
| ACCAAGGTTGTTGCAAATGA+TGG | + | chr8_1:59480408-59480427 | None:intergenic | 40.0% | |
| TGCTAGAATAGGTTGTGAAG+TGG | + | chr8_1:59480549-59480568 | None:intergenic | 40.0% | |
| GTTACTTGGACTGCTAGAAT+AGG | + | chr8_1:59480560-59480579 | None:intergenic | 40.0% | |
| CATTAGCTAACTCCGTTACT+TGG | + | chr8_1:59480574-59480593 | None:intergenic | 40.0% | |
| ! | CAAGTAACGGAGTTAGCTAA+TGG | - | chr8_1:59480572-59480591 | Msa1204020:CDS | 40.0% |
| !! | AGGGAGTTTTGGTATACTCT+GGG | + | chr8_1:59480690-59480709 | None:intergenic | 40.0% |
| !! | AAGGGAGTTTTGGTATACTC+TGG | + | chr8_1:59480691-59480710 | None:intergenic | 40.0% |
| ! | CGTTGAAATGAAGGGAGTTT+TGG | + | chr8_1:59480701-59480720 | None:intergenic | 40.0% |
| AACTCCCTTCATTTCAACGT+TGG | - | chr8_1:59480702-59480721 | Msa1204020:CDS | 40.0% | |
| GGAACCAACGTTGAAATGAA+GGG | + | chr8_1:59480709-59480728 | None:intergenic | 40.0% | |
| TTGGAAGTTCAACGTCGTTT+GGG | + | chr8_1:59480730-59480749 | None:intergenic | 40.0% | |
| ATTGGAAGTTCAACGTCGTT+TGG | + | chr8_1:59480731-59480750 | None:intergenic | 40.0% | |
| ! | AAGCGTTGTTCTCTCATGTA+TGG | - | chr8_1:59480912-59480931 | Msa1204020:CDS | 40.0% |
| CCAAAATAATCCTCGTCAAG+CGG | + | chr8_1:59481025-59481044 | None:intergenic | 40.0% | |
| TTTGGAAATGCAGGGATCAT+TGG | - | chr8_1:59481040-59481059 | Msa1204020:CDS | 40.0% | |
| !! | TAGGGGAGATTCTAGAATGT+GGG | - | chr8_1:59481080-59481099 | Msa1204020:CDS | 40.0% |
| !! | GAGATTCTAGAATGTGGGAT+TGG | - | chr8_1:59481085-59481104 | Msa1204020:CDS | 40.0% |
| TTGAGAATGCCGAAGTTGTT+TGG | - | chr8_1:59481184-59481203 | Msa1204020:CDS | 40.0% | |
| TGAGAATGCCGAAGTTGTTT+GGG | - | chr8_1:59481185-59481204 | Msa1204020:CDS | 40.0% | |
| TTTGGCAGGTGCTAATTCAT+TGG | - | chr8_1:59481216-59481235 | Msa1204020:CDS | 40.0% | |
| TCTCCGAGGTTTGATGTTTA+TGG | - | chr8_1:59481250-59481269 | Msa1204020:CDS | 40.0% | |
| ACTAGTTGAGATCACTGTGA+TGG | + | chr8_1:59480120-59480139 | None:intergenic | 40.0% | |
| ! | TTTGGATGGTTTCAAGTGGA+AGG | + | chr8_1:59480229-59480248 | None:intergenic | 40.0% |
| ! | CCTTTTTGGATGGTTTCAAG+TGG | + | chr8_1:59480233-59480252 | None:intergenic | 40.0% |
| CCACTTGAAACCATCCAAAA+AGG | - | chr8_1:59480230-59480249 | Msa1204020:intron | 40.0% | |
| ! | GAAAAGAAGGCCTTTTTGGA+TGG | + | chr8_1:59480243-59480262 | None:intergenic | 40.0% |
| ! | GATGGAAAAGAAGGCCTTTT+TGG | + | chr8_1:59480247-59480266 | None:intergenic | 40.0% |
| !!! | TGGTGGATTTGGTTTTGGTT+TGG | + | chr8_1:59480278-59480297 | None:intergenic | 40.0% |
| !! | TGGAAAATAGGAGAGTGTTG+TGG | + | chr8_1:59480318-59480337 | None:intergenic | 40.0% |
| ! | TCCTATTTTCCACCCTTAAC+AGG | - | chr8_1:59480326-59480345 | Msa1204020:CDS | 40.0% |
| GATTATAAGACGGCCTGTTA+AGG | + | chr8_1:59480342-59480361 | None:intergenic | 40.0% | |
| TCCATCATTTGCAACAACCT+TGG | - | chr8_1:59480404-59480423 | Msa1204020:CDS | 40.0% | |
| ACCAAGGTTGTTGCAAATGA+TGG | + | chr8_1:59480408-59480427 | None:intergenic | 40.0% | |
| TGCTAGAATAGGTTGTGAAG+TGG | + | chr8_1:59480549-59480568 | None:intergenic | 40.0% | |
| GTTACTTGGACTGCTAGAAT+AGG | + | chr8_1:59480560-59480579 | None:intergenic | 40.0% | |
| CATTAGCTAACTCCGTTACT+TGG | + | chr8_1:59480574-59480593 | None:intergenic | 40.0% | |
| ! | CAAGTAACGGAGTTAGCTAA+TGG | - | chr8_1:59480572-59480591 | Msa1204020:CDS | 40.0% |
| !! | AGGGAGTTTTGGTATACTCT+GGG | + | chr8_1:59480690-59480709 | None:intergenic | 40.0% |
| !! | AAGGGAGTTTTGGTATACTC+TGG | + | chr8_1:59480691-59480710 | None:intergenic | 40.0% |
| ! | CGTTGAAATGAAGGGAGTTT+TGG | + | chr8_1:59480701-59480720 | None:intergenic | 40.0% |
| AACTCCCTTCATTTCAACGT+TGG | - | chr8_1:59480702-59480721 | Msa1204020:CDS | 40.0% | |
| GGAACCAACGTTGAAATGAA+GGG | + | chr8_1:59480709-59480728 | None:intergenic | 40.0% | |
| TTGGAAGTTCAACGTCGTTT+GGG | + | chr8_1:59480730-59480749 | None:intergenic | 40.0% | |
| ATTGGAAGTTCAACGTCGTT+TGG | + | chr8_1:59480731-59480750 | None:intergenic | 40.0% | |
| ! | AAGCGTTGTTCTCTCATGTA+TGG | - | chr8_1:59480912-59480931 | Msa1204020:CDS | 40.0% |
| CCAAAATAATCCTCGTCAAG+CGG | + | chr8_1:59481025-59481044 | None:intergenic | 40.0% | |
| TTTGGAAATGCAGGGATCAT+TGG | - | chr8_1:59481040-59481059 | Msa1204020:CDS | 40.0% | |
| !! | TAGGGGAGATTCTAGAATGT+GGG | - | chr8_1:59481080-59481099 | Msa1204020:CDS | 40.0% |
| !! | GAGATTCTAGAATGTGGGAT+TGG | - | chr8_1:59481085-59481104 | Msa1204020:CDS | 40.0% |
| TTGAGAATGCCGAAGTTGTT+TGG | - | chr8_1:59481184-59481203 | Msa1204020:CDS | 40.0% | |
| TGAGAATGCCGAAGTTGTTT+GGG | - | chr8_1:59481185-59481204 | Msa1204020:CDS | 40.0% | |
| TTTGGCAGGTGCTAATTCAT+TGG | - | chr8_1:59481216-59481235 | Msa1204020:CDS | 40.0% | |
| TCTCCGAGGTTTGATGTTTA+TGG | - | chr8_1:59481250-59481269 | Msa1204020:CDS | 40.0% | |
| GGAAGGAATTGAAGATCCCA+TGG | + | chr8_1:59480212-59480231 | None:intergenic | 45.0% | |
| GCCTGTTAAGGGTGGAAAAT+AGG | + | chr8_1:59480330-59480349 | None:intergenic | 45.0% | |
| GTTTGTGGCTACGTTGTGTT+GGG | + | chr8_1:59480366-59480385 | None:intergenic | 45.0% | |
| TGTTTGTGGCTACGTTGTGT+TGG | + | chr8_1:59480367-59480386 | None:intergenic | 45.0% | |
| !! | TTGTGTTTTCCGCTTTTGCG+TGG | + | chr8_1:59480442-59480461 | None:intergenic | 45.0% |
| CTCAACCACGTTGTTTGTGA+TGG | - | chr8_1:59480614-59480633 | Msa1204020:CDS | 45.0% | |
| TCTTGCCATCACAAACAACG+TGG | + | chr8_1:59480622-59480641 | None:intergenic | 45.0% | |
| GGGAACCAACGTTGAAATGA+AGG | + | chr8_1:59480710-59480729 | None:intergenic | 45.0% | |
| ! | CTTTCAGGTAAGTTCTGCGT+CGG | + | chr8_1:59480794-59480813 | None:intergenic | 45.0% |
| AAATAATCCTCGTCAAGCGG+AGG | + | chr8_1:59481022-59481041 | None:intergenic | 45.0% | |
| ! | CCGCTTGACGAGGATTATTT+TGG | - | chr8_1:59481022-59481041 | Msa1204020:CDS | 45.0% |
| !! | GTAGGGGAGATTCTAGAATG+TGG | - | chr8_1:59481079-59481098 | Msa1204020:CDS | 45.0% |
| !!! | TGATTTTGGTTGGGGGAAAC+CGG | - | chr8_1:59481276-59481295 | Msa1204020:CDS | 45.0% |
| GGGAAGATTACTGTGTTTGC+AGG | - | chr8_1:59481334-59481353 | Msa1204020:CDS | 45.0% | |
| GGGAAATGATGCTGAGTTCT+TGG | - | chr8_1:59481417-59481436 | Msa1204020:CDS | 45.0% | |
| GGAAGGAATTGAAGATCCCA+TGG | + | chr8_1:59480212-59480231 | None:intergenic | 45.0% | |
| GCCTGTTAAGGGTGGAAAAT+AGG | + | chr8_1:59480330-59480349 | None:intergenic | 45.0% | |
| GTTTGTGGCTACGTTGTGTT+GGG | + | chr8_1:59480366-59480385 | None:intergenic | 45.0% | |
| TGTTTGTGGCTACGTTGTGT+TGG | + | chr8_1:59480367-59480386 | None:intergenic | 45.0% | |
| !! | TTGTGTTTTCCGCTTTTGCG+TGG | + | chr8_1:59480442-59480461 | None:intergenic | 45.0% |
| CTCAACCACGTTGTTTGTGA+TGG | - | chr8_1:59480614-59480633 | Msa1204020:CDS | 45.0% | |
| TCTTGCCATCACAAACAACG+TGG | + | chr8_1:59480622-59480641 | None:intergenic | 45.0% | |
| GGGAACCAACGTTGAAATGA+AGG | + | chr8_1:59480710-59480729 | None:intergenic | 45.0% | |
| ! | CTTTCAGGTAAGTTCTGCGT+CGG | + | chr8_1:59480794-59480813 | None:intergenic | 45.0% |
| AAATAATCCTCGTCAAGCGG+AGG | + | chr8_1:59481022-59481041 | None:intergenic | 45.0% | |
| ! | CCGCTTGACGAGGATTATTT+TGG | - | chr8_1:59481022-59481041 | Msa1204020:CDS | 45.0% |
| !! | GTAGGGGAGATTCTAGAATG+TGG | - | chr8_1:59481079-59481098 | Msa1204020:CDS | 45.0% |
| !!! | TGATTTTGGTTGGGGGAAAC+CGG | - | chr8_1:59481276-59481295 | Msa1204020:CDS | 45.0% |
| GGGAAGATTACTGTGTTTGC+AGG | - | chr8_1:59481334-59481353 | Msa1204020:CDS | 45.0% | |
| GGGAAATGATGCTGAGTTCT+TGG | - | chr8_1:59481417-59481436 | Msa1204020:CDS | 45.0% | |
| ATAAGACGGCCTGTTAAGGG+TGG | + | chr8_1:59480338-59480357 | None:intergenic | 50.0% | |
| TCTCTTCGTCCACGCAAAAG+CGG | - | chr8_1:59480430-59480449 | Msa1204020:CDS | 50.0% | |
| TCAAGCGGAGGAATCATCCT+TGG | + | chr8_1:59481010-59481029 | None:intergenic | 50.0% | |
| AAACCGGTAGGGGTTTGAAG+TGG | - | chr8_1:59481292-59481311 | Msa1204020:CDS | 50.0% | |
| ! | AACCGGTAGGGGTTTGAAGT+GGG | - | chr8_1:59481293-59481312 | Msa1204020:CDS | 50.0% |
| GTGTTTGCAGGAGCTGAAGA+AGG | - | chr8_1:59481346-59481365 | Msa1204020:CDS | 50.0% | |
| ATAAGACGGCCTGTTAAGGG+TGG | + | chr8_1:59480338-59480357 | None:intergenic | 50.0% | |
| TCTCTTCGTCCACGCAAAAG+CGG | - | chr8_1:59480430-59480449 | Msa1204020:CDS | 50.0% | |
| TCAAGCGGAGGAATCATCCT+TGG | + | chr8_1:59481010-59481029 | None:intergenic | 50.0% | |
| AAACCGGTAGGGGTTTGAAG+TGG | - | chr8_1:59481292-59481311 | Msa1204020:CDS | 50.0% | |
| ! | AACCGGTAGGGGTTTGAAGT+GGG | - | chr8_1:59481293-59481312 | Msa1204020:CDS | 50.0% |
| GTGTTTGCAGGAGCTGAAGA+AGG | - | chr8_1:59481346-59481365 | Msa1204020:CDS | 50.0% | |
| GATGATTCCTCCGCTTGACG+AGG | - | chr8_1:59481012-59481031 | Msa1204020:CDS | 55.0% | |
| TGGCTACGAGTAGTTCTCCG+AGG | - | chr8_1:59481236-59481255 | Msa1204020:CDS | 55.0% | |
| TTTGGTTGGGGGAAACCGGT+AGG | - | chr8_1:59481280-59481299 | Msa1204020:CDS | 55.0% | |
| TTGGTTGGGGGAAACCGGTA+GGG | - | chr8_1:59481281-59481300 | Msa1204020:CDS | 55.0% | |
| CTCCCACTTCAAACCCCTAC+CGG | + | chr8_1:59481298-59481317 | None:intergenic | 55.0% | |
| GATGATTCCTCCGCTTGACG+AGG | - | chr8_1:59481012-59481031 | Msa1204020:CDS | 55.0% | |
| TGGCTACGAGTAGTTCTCCG+AGG | - | chr8_1:59481236-59481255 | Msa1204020:CDS | 55.0% | |
| TTTGGTTGGGGGAAACCGGT+AGG | - | chr8_1:59481280-59481299 | Msa1204020:CDS | 55.0% | |
| TTGGTTGGGGGAAACCGGTA+GGG | - | chr8_1:59481281-59481300 | Msa1204020:CDS | 55.0% | |
| CTCCCACTTCAAACCCCTAC+CGG | + | chr8_1:59481298-59481317 | None:intergenic | 55.0% | |
| !! | CGTGGACGAAGAGAGCACCA+AGG | + | chr8_1:59480424-59480443 | None:intergenic | 60.0% |
| TGGTTGGGGGAAACCGGTAG+GGG | - | chr8_1:59481282-59481301 | Msa1204020:CDS | 60.0% | |
| !! | CGTGGACGAAGAGAGCACCA+AGG | + | chr8_1:59480424-59480443 | None:intergenic | 60.0% |
| TGGTTGGGGGAAACCGGTAG+GGG | - | chr8_1:59481282-59481301 | Msa1204020:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 59480110 | 59481456 | 59480110 | ID=Msa1204020;Name=Msa1204020 |
| chr8_1 | mRNA | 59480110 | 59481456 | 59480110 | ID=Msa1204020-mRNA-1;Parent=Msa1204020;Name=Msa1204020-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|2|0|420 |
| chr8_1 | exon | 59480295 | 59481456 | 59480295 | ID=Msa1204020-mRNA-1:exon:19193;Parent=Msa1204020-mRNA-1 |
| chr8_1 | exon | 59480110 | 59480210 | 59480110 | ID=Msa1204020-mRNA-1:exon:19192;Parent=Msa1204020-mRNA-1 |
| chr8_1 | CDS | 59480295 | 59481456 | 59480295 | ID=Msa1204020-mRNA-1:cds;Parent=Msa1204020-mRNA-1 |
| chr8_1 | CDS | 59480110 | 59480210 | 59480110 | ID=Msa1204020-mRNA-1:cds;Parent=Msa1204020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
