AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0521670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521670 MtrunA17_Chr3g0139661 91.342 231 4 1 1 231 1 215 1.69e-154 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521670 AT5G11500.1 80.087 231 30 1 1 231 1 215 2.26e-138 387
Msa0521670 AT5G11500.2 79.654 231 30 1 1 231 1 214 9.79e-138 385

Find 88 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAACTATGCGAAATTATC+AGG 0.173736 3_4:+74616514 Msa0521670:three_prime_UTR
TTGGGAGTTGAATTTCAATT+TGG 0.195511 3_4:-74612325 None:intergenic
GATAAAGGAGAATATTAAAT+AGG 0.199656 3_4:+74616307 Msa0521670:three_prime_UTR
TTCATGTAAACATTGGTTAT+TGG 0.243511 3_4:+74616160 Msa0521670:exon
TTGGGTTAGGGTTCTGAGTT+TGG 0.289228 3_4:-74612344 None:intergenic
GAGGGAAAGTGCGTTGGGTT+AGG 0.289703 3_4:-74612357 None:intergenic
ATGGTGTAATCGCCAGCTTC+AGG 0.299549 3_4:-74612461 None:intergenic
TGACATGAGTGAAGGTTTAT+TGG 0.304812 3_4:+74613558 Msa0521670:CDS
TGGGAGTTGAATTTCAATTT+GGG 0.305116 3_4:-74612324 None:intergenic
TGTGTACCCAATTGTGATTT+AGG 0.314237 3_4:+74616284 Msa0521670:three_prime_UTR
CTTTATCCCTAAATCACAAT+TGG 0.320848 3_4:-74616291 None:intergenic
TCCTGAAGCAATGTCTTTGT+TGG 0.330602 3_4:-74616107 None:intergenic
TGAAATCCTCCTCCACTTCC+TGG 0.332125 3_4:-74616141 None:intergenic
CAATTGTGATTTAGGGATAA+AGG 0.352542 3_4:+74616292 Msa0521670:three_prime_UTR
CTGCATCATTGTCTTGGTTA+AGG 0.354589 3_4:+74616248 Msa0521670:three_prime_UTR
TATTAGTCACCTTTCAAATC+AGG 0.362648 3_4:-74614467 None:intergenic
TGAGTCTTGTTAGGCTTGTC+AGG 0.374176 3_4:+74616466 Msa0521670:three_prime_UTR
AAATCTAAGCAACTCAATAA+TGG 0.375697 3_4:+74612418 Msa0521670:exon
GTCAAAGCAAATTCAATTCA+AGG 0.385597 3_4:+74613598 Msa0521670:CDS
GGAAATAGAAAGACTAGAAA+AGG 0.394170 3_4:+74616027 Msa0521670:CDS
TGGCGATTACACCATCTTCA+TGG 0.399028 3_4:+74612469 Msa0521670:CDS
TGGGTTAGGGTTCTGAGTTT+GGG 0.402548 3_4:-74612343 None:intergenic
GTGTACCCAATTGTGATTTA+GGG 0.403094 3_4:+74616285 Msa0521670:three_prime_UTR
AGGGAAAGTGCGTTGGGTTA+GGG 0.407591 3_4:-74612356 None:intergenic
ATAAAGGAGAATATTAAATA+GGG 0.409087 3_4:+74616308 Msa0521670:three_prime_UTR
TAGGAGCTACAAGGGTTTGA+TGG 0.418648 3_4:+74616066 Msa0521670:CDS
CACAAGCAAAGTTATAAATC+AGG 0.423869 3_4:-74616378 None:intergenic
TTCAGGAAGCAAATCATTCC+AGG 0.424780 3_4:+74616123 Msa0521670:CDS
TCCAACAAAGACATTGCTTC+AGG 0.427259 3_4:+74616106 Msa0521670:CDS
TTGTTGAGAATTTGAGGATC+GGG 0.434188 3_4:+74615851 Msa0521670:CDS
TGAACTTTGTTGAGAATTTG+AGG 0.440604 3_4:+74615845 Msa0521670:CDS
CCAGTTGGGTTGTTTAATCA+TGG 0.441424 3_4:-74616216 None:intergenic
CTTCAGCCCATGTTTATGTC+AGG 0.447158 3_4:+74613512 Msa0521670:CDS
GGAGGGGAGAATGCAATGAT+TGG 0.450934 3_4:+74616329 Msa0521670:three_prime_UTR
AGATAAATGAGATTGTTAAC+AGG 0.451759 3_4:+74614417 Msa0521670:CDS
CCATGATTAAACAACCCAAC+TGG 0.462840 3_4:+74616216 Msa0521670:three_prime_UTR
TTCAAAGCACGCCCTGAAGC+TGG 0.470944 3_4:+74612449 Msa0521670:CDS
AGGAGAAACAATCAGAGCTT+AGG 0.472437 3_4:+74616047 Msa0521670:CDS
CTGAAACTGCATCATTGTCT+TGG 0.475503 3_4:+74616242 Msa0521670:three_prime_UTR
ACGGTTTCATCGAAGACATC+TGG 0.476438 3_4:+74612528 Msa0521670:CDS
TTTATCCCTAAATCACAATT+GGG 0.484561 3_4:-74616290 None:intergenic
TTTAAAGAAAACTGCTTCGA+TGG 0.487046 3_4:+74614188 Msa0521670:CDS
TATAACTTTGCTTGTGACAA+TGG 0.488259 3_4:+74616385 Msa0521670:three_prime_UTR
CTAGTCTTTCTATTTCCTCA+CGG 0.488887 3_4:-74616021 None:intergenic
TGGTGTAATCGCCAGCTTCA+GGG 0.491316 3_4:-74612460 None:intergenic
AAGCAAATCATTCCAGGAAG+TGG 0.495884 3_4:+74616129 Msa0521670:CDS
GCACGCACGAACACGAGAGG+AGG 0.497469 3_4:-74612376 None:intergenic
TTGATGTTGTTTACACTCCC+TGG 0.498834 3_4:+74614160 Msa0521670:CDS
GAGAGGAGGGAAAGTGCGTT+GGG 0.499396 3_4:-74612362 None:intergenic
TGCAGTTTCAGATTCCAGTT+GGG 0.507376 3_4:-74616230 None:intergenic
GAATTTGAGGATCGGGCCTA+AGG 0.516977 3_4:+74615858 Msa0521670:CDS
AACGAGGAGCTCATCAAATA+CGG 0.524376 3_4:+74612509 Msa0521670:CDS
TCGATGGACGTTGGTCAAGT+TGG 0.525188 3_4:+74614204 Msa0521670:CDS
ATCATTCCAGGAAGTGGAGG+AGG 0.526776 3_4:+74616135 Msa0521670:CDS
GGAGGATTTCATGTAAACAT+TGG 0.527466 3_4:+74616153 Msa0521670:exon
CGAGAGGAGGGAAAGTGCGT+TGG 0.528671 3_4:-74612363 None:intergenic
GGAGAATATTAAATAGGGAG+GGG 0.530404 3_4:+74616313 Msa0521670:three_prime_UTR
ATGCAGTTTCAGATTCCAGT+TGG 0.535743 3_4:-74616231 None:intergenic
AGGAGAATATTAAATAGGGA+GGG 0.537963 3_4:+74616312 Msa0521670:three_prime_UTR
AATTGGGTACACACACCACT+TGG 0.544733 3_4:-74616274 None:intergenic
CACGCACGAACACGAGAGGA+GGG 0.548328 3_4:-74612375 None:intergenic
CACGCACGCACGAACACGAG+AGG 0.558592 3_4:-74612379 None:intergenic
CTTGTCAAGACCCATGAAGA+TGG 0.559047 3_4:-74612480 None:intergenic
AAGGAGAATATTAAATAGGG+AGG 0.563329 3_4:+74616311 Msa0521670:three_prime_UTR
GGCGATTACACCATCTTCAT+GGG 0.565091 3_4:+74612470 Msa0521670:CDS
TTAACTATGCGAAATTATCA+GGG 0.568132 3_4:+74616515 Msa0521670:three_prime_UTR
ATCAGAGCTTAGGAGCTACA+AGG 0.570116 3_4:+74616057 Msa0521670:CDS
TTTGTTGAGAATTTGAGGAT+CGG 0.571410 3_4:+74615850 Msa0521670:CDS
GAAAGAAAACCTGATTTGAA+AGG 0.573575 3_4:+74614458 Msa0521670:CDS
TTGGCTTATAGACAGATGAC+TGG 0.592804 3_4:+74616179 Msa0521670:three_prime_UTR
GGGAGTTGAATTTCAATTTG+GGG 0.595002 3_4:-74612323 None:intergenic
TGTGCAGCCTGACATAAACA+TGG 0.601148 3_4:-74613519 None:intergenic
ACTATTGATGACATGAGTGA+AGG 0.607342 3_4:+74613550 Msa0521670:CDS
CAAATCATTCCAGGAAGTGG+AGG 0.612983 3_4:+74616132 Msa0521670:CDS
CTGAAGACATCTTATCAACA+TGG 0.615104 3_4:-74613495 None:intergenic
CAGGCTAAACAAAACGAAGG+TGG 0.619805 3_4:+74614436 Msa0521670:CDS
TTAGGTGCGAACTGTGAGAG+TGG 0.624552 3_4:+74614388 Msa0521670:intron
TCTTGACAAGTTCGAGAACG+AGG 0.634328 3_4:+74612493 Msa0521670:CDS
TCAGAGCTTAGGAGCTACAA+GGG 0.638922 3_4:+74616058 Msa0521670:CDS
AAAACTGCTTCGATGGACGT+TGG 0.639922 3_4:+74614195 Msa0521670:CDS
GCTTATAGACAGATGACTGG+TGG 0.679740 3_4:+74616182 Msa0521670:three_prime_UTR
GTTTATGTCAGGCTGCACAA+AGG 0.698981 3_4:+74613523 Msa0521670:CDS
CTGTGTGCAGAAGCGCCGTG+AGG 0.707586 3_4:+74616006 Msa0521670:intron
GTGCAGCCTGACATAAACAT+GGG 0.715437 3_4:-74613518 None:intergenic
TCAGGTATATAACCATCACA+AGG 0.717871 3_4:-74616360 None:intergenic
TAACAGGCTAAACAAAACGA+AGG 0.733246 3_4:+74614433 Msa0521670:CDS
CTGCTGCTGAAAGAGCTGAG+AGG 0.735071 3_4:+74614710 Msa0521670:CDS
TCTTGGTTAAGGAAACCAAG+TGG 0.738141 3_4:+74616259 Msa0521670:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTTAATTAATGATTGAAT+CGG + chr3_4:74613459-74613478 Msa0521670:intron 15.0%
!! ATGTTAAAAAAAACCTATAA+AGG - chr3_4:74614513-74614532 None:intergenic 15.0%
!!! CATTTATGATTAGAATTTTA+TGG + chr3_4:74614530-74614549 Msa0521670:intron 15.0%
!! ATAAAGGAGAATATTAAATA+GGG + chr3_4:74616308-74616327 Msa0521670:three_prime_UTR 15.0%
!!! TTTTTTCAAATAAGATGACA+TGG - chr3_4:74613012-74613031 None:intergenic 20.0%
!! GTTCAAATGATATTCTTATT+TGG + chr3_4:74613371-74613390 Msa0521670:intron 20.0%
!! CTTGAAAGAATACATAAAAT+TGG - chr3_4:74613685-74613704 None:intergenic 20.0%
!! TAATTTCAACTTATACAAGA+AGG - chr3_4:74613850-74613869 None:intergenic 20.0%
!! ATTTGTCATAAGCTTAAAAA+GGG - chr3_4:74613927-74613946 None:intergenic 20.0%
!! AATTTGTCATAAGCTTAAAA+AGG - chr3_4:74613928-74613947 None:intergenic 20.0%
!!! TACCTTTTTTTCTTTATTCA+TGG + chr3_4:74614116-74614135 Msa0521670:intron 20.0%
!! CTACTGCAAAAAAAAAAAAA+AGG - chr3_4:74614303-74614322 None:intergenic 20.0%
!!! TTTTTTTTTTTTGCAGTAGT+TGG + chr3_4:74614304-74614323 Msa0521670:intron 20.0%
!!! TTTTTTTTTTTGCAGTAGTT+GGG + chr3_4:74614305-74614324 Msa0521670:intron 20.0%
!!! ATTTTTACATTAGATTACTC+AGG + chr3_4:74615030-74615049 Msa0521670:intron 20.0%
!! TACTAAAAGTCATTATAATC+CGG + chr3_4:74615178-74615197 Msa0521670:intron 20.0%
!! ATAAACAGATAGAAAATACT+AGG + chr3_4:74615233-74615252 Msa0521670:intron 20.0%
!! GATAAAGGAGAATATTAAAT+AGG + chr3_4:74616307-74616326 Msa0521670:three_prime_UTR 20.0%
!!! ATAATTTTATGAGTCTTGTT+AGG + chr3_4:74616457-74616476 Msa0521670:three_prime_UTR 20.0%
!! TTATGTTTTATGCAGCAATT+CGG + chr3_4:74612291-74612310 Msa0521670:five_prime_UTR 25.0%
! AAATCTAAGCAACTCAATAA+TGG + chr3_4:74612418-74612437 Msa0521670:exon 25.0%
! AATTCATGAAATTGGCAAAT+AGG - chr3_4:74612572-74612591 None:intergenic 25.0%
! GAAGAAGAAATTCATGAAAT+TGG - chr3_4:74612580-74612599 None:intergenic 25.0%
! CAAAATCATAAATCAGACTA+AGG - chr3_4:74612645-74612664 None:intergenic 25.0%
!! TCTTTAGAAACTAGGATATT+GGG + chr3_4:74612710-74612729 Msa0521670:intron 25.0%
! TTGATTGAATTTGTAGTGAT+TGG - chr3_4:74613082-74613101 None:intergenic 25.0%
!! ATTTAGAAATTTTGCATCAG+GGG - chr3_4:74613331-74613350 None:intergenic 25.0%
!! GATTTAGAAATTTTGCATCA+GGG - chr3_4:74613332-74613351 None:intergenic 25.0%
!! AGATTTAGAAATTTTGCATC+AGG - chr3_4:74613333-74613352 None:intergenic 25.0%
! ATTTCAGTTGCATTTATAAC+TGG + chr3_4:74613714-74613733 Msa0521670:intron 25.0%
! TTTATAACTGGAAATCTGAA+AGG + chr3_4:74613726-74613745 Msa0521670:intron 25.0%
!! GCTTATGACAAATTTTTCTT+AGG + chr3_4:74613934-74613953 Msa0521670:intron 25.0%
! TGCCATGAATAAAGAAAAAA+AGG - chr3_4:74614121-74614140 None:intergenic 25.0%
!!! TTTTTTTCTTTATTCATGGC+AGG + chr3_4:74614120-74614139 Msa0521670:intron 25.0%
!!! TTTTTTCTTTATTCATGGCA+GGG + chr3_4:74614121-74614140 Msa0521670:intron 25.0%
!!! TTTTTTTTTTGCAGTAGTTG+GGG + chr3_4:74614306-74614325 Msa0521670:intron 25.0%
! AGATAAATGAGATTGTTAAC+AGG + chr3_4:74614417-74614436 Msa0521670:CDS 25.0%
! AAAAAAAACCTATAAAGGCA+AGG - chr3_4:74614508-74614527 None:intergenic 25.0%
!! TTAGAATTTTATGGATGAAG+AGG + chr3_4:74614539-74614558 Msa0521670:intron 25.0%
! TATATTGTGCTTAGATACTT+TGG - chr3_4:74614801-74614820 None:intergenic 25.0%
! TAAGTTAACAGTATATCATG+AGG - chr3_4:74614953-74614972 None:intergenic 25.0%
! TATCTGTTTATTTCAGCATT+GGG - chr3_4:74615224-74615243 None:intergenic 25.0%
! TTATGAGTTTGACAATGATA+TGG - chr3_4:74615287-74615306 None:intergenic 25.0%
!! TTTTATTAGATCTTGACCAA+TGG + chr3_4:74615323-74615342 Msa0521670:intron 25.0%
! AAAGATATTTCATTGTTAGC+AGG - chr3_4:74615590-74615609 None:intergenic 25.0%
! TCACAAATATAACATCCTAA+AGG - chr3_4:74615828-74615847 None:intergenic 25.0%
!!! GAAGATATTTCATTTTTAGC+AGG - chr3_4:74615902-74615921 None:intergenic 25.0%
!! TTCATGTAAACATTGGTTAT+TGG + chr3_4:74616160-74616179 Msa0521670:exon 25.0%
! TTTATCCCTAAATCACAATT+GGG - chr3_4:74616293-74616312 None:intergenic 25.0%
!!! AGGTTTAAACTTTTGCTTTT+AGG + chr3_4:74616486-74616505 Msa0521670:three_prime_UTR 25.0%
! TTAACTATGCGAAATTATCA+GGG + chr3_4:74616515-74616534 Msa0521670:three_prime_UTR 25.0%
!!! TTTTGAAGTATTCATGTTAC+TGG + chr3_4:74616540-74616559 Msa0521670:three_prime_UTR 25.0%
TGGGAGTTGAATTTCAATTT+GGG - chr3_4:74612327-74612346 None:intergenic 30.0%
TTGGGAGTTGAATTTCAATT+TGG - chr3_4:74612328-74612347 None:intergenic 30.0%
TGAAATTGGCAAATAGGAAA+TGG - chr3_4:74612566-74612585 None:intergenic 30.0%
! TTTCAGTGTCTTTAGAAACT+AGG + chr3_4:74612702-74612721 Msa0521670:intron 30.0%
! GTCTTTAGAAACTAGGATAT+TGG + chr3_4:74612709-74612728 Msa0521670:intron 30.0%
TGGGATTAGACTAATTACTT+TGG + chr3_4:74612729-74612748 Msa0521670:intron 30.0%
!! TTACTTTGGTGATGTTTATG+TGG + chr3_4:74612743-74612762 Msa0521670:intron 30.0%
! CGGTTATTTCAATAATACCA+TGG + chr3_4:74612809-74612828 Msa0521670:intron 30.0%
AATAATACCATGGCTATGAT+TGG + chr3_4:74612819-74612838 Msa0521670:intron 30.0%
GTAGTGATTGGTAAAATTAG+CGG - chr3_4:74613070-74613089 None:intergenic 30.0%
TACAATAGCAGATAGTTGAT+AGG - chr3_4:74613169-74613188 None:intergenic 30.0%
CACGTAAACATAGTTATGTT+TGG - chr3_4:74613194-74613213 None:intergenic 30.0%
GTCAAAGCAAATTCAATTCA+AGG + chr3_4:74613598-74613617 Msa0521670:CDS 30.0%
GAAGCTATTGTTCAAAAAAC+TGG - chr3_4:74613825-74613844 None:intergenic 30.0%
TAAAACCTAGTATGAGAACT+AGG - chr3_4:74614024-74614043 None:intergenic 30.0%
ATCACTAACAGCACAAAATT+AGG - chr3_4:74614096-74614115 None:intergenic 30.0%
! GTTTTCTTTAAATTGGACCA+GGG - chr3_4:74614180-74614199 None:intergenic 30.0%
! AGTTTTCTTTAAATTGGACC+AGG - chr3_4:74614181-74614200 None:intergenic 30.0%
! CGAAGCAGTTTTCTTTAAAT+TGG - chr3_4:74614187-74614206 None:intergenic 30.0%
TTTAAAGAAAACTGCTTCGA+TGG + chr3_4:74614188-74614207 Msa0521670:CDS 30.0%
! TGGTTTTCACAACTCAAAAA+TGG + chr3_4:74614224-74614243 Msa0521670:CDS 30.0%
!!! AAATGGTCTGTTTTTACACT+TGG + chr3_4:74614241-74614260 Msa0521670:intron 30.0%
CACTTTAGACTATCATTATC+TGG + chr3_4:74614353-74614372 Msa0521670:intron 30.0%
! GAAAGAAAACCTGATTTGAA+AGG + chr3_4:74614458-74614477 Msa0521670:CDS 30.0%
TATTAGTCACCTTTCAAATC+AGG - chr3_4:74614470-74614489 None:intergenic 30.0%
TATTCTTTCCTTGCCTTTAT+AGG + chr3_4:74614497-74614516 Msa0521670:intron 30.0%
ACAATACATTGTTGTATACC+TGG - chr3_4:74614903-74614922 None:intergenic 30.0%
ATGTATTGTCACATACATCA+TGG + chr3_4:74614914-74614933 Msa0521670:intron 30.0%
AACAACTAGAATAAGAACAC+CGG - chr3_4:74615200-74615219 None:intergenic 30.0%
CTATCTGTTTATTTCAGCAT+TGG - chr3_4:74615225-74615244 None:intergenic 30.0%
!! ATTTAAGTTTTCCTATGTCC+TGG + chr3_4:74615449-74615468 Msa0521670:intron 30.0%
!! TTTCCATCTTGTTGTTCTTT+AGG + chr3_4:74615498-74615517 Msa0521670:intron 30.0%
! TTTGTATCTTGTTGTCCTTT+AGG + chr3_4:74615810-74615829 Msa0521670:intron 30.0%
TGAACTTTGTTGAGAATTTG+AGG + chr3_4:74615845-74615864 Msa0521670:CDS 30.0%
TTTGTTGAGAATTTGAGGAT+CGG + chr3_4:74615850-74615869 Msa0521670:CDS 30.0%
GGAAATAGAAAGACTAGAAA+AGG + chr3_4:74616027-74616046 Msa0521670:CDS 30.0%
CTTTATCCCTAAATCACAAT+TGG - chr3_4:74616294-74616313 None:intergenic 30.0%
CAATTGTGATTTAGGGATAA+AGG + chr3_4:74616292-74616311 Msa0521670:three_prime_UTR 30.0%
AAGGAGAATATTAAATAGGG+AGG + chr3_4:74616311-74616330 Msa0521670:three_prime_UTR 30.0%
AGGAGAATATTAAATAGGGA+GGG + chr3_4:74616312-74616331 Msa0521670:three_prime_UTR 30.0%
CACAAGCAAAGTTATAAATC+AGG - chr3_4:74616381-74616400 None:intergenic 30.0%
TATAACTTTGCTTGTGACAA+TGG + chr3_4:74616385-74616404 Msa0521670:three_prime_UTR 30.0%
GTTAACTATGCGAAATTATC+AGG + chr3_4:74616514-74616533 Msa0521670:three_prime_UTR 30.0%
GGGAGTTGAATTTCAATTTG+GGG - chr3_4:74612326-74612345 None:intergenic 35.0%
GGCAAATAGGAAATGGAATT+CGG - chr3_4:74612559-74612578 None:intergenic 35.0%
GACACTGAAACAAAACGATT+TGG - chr3_4:74612692-74612711 None:intergenic 35.0%
GTTGTGATTCAATGATTCTG+CGG + chr3_4:74612789-74612808 Msa0521670:intron 35.0%
GAGCTTATAAGCTCAAAATC+TGG - chr3_4:74612850-74612869 None:intergenic 35.0%
ACTCGTGAGAGAAACAAAAA+TGG - chr3_4:74612902-74612921 None:intergenic 35.0%
!! GTTGATAGGCTAGCTTATAA+CGG - chr3_4:74613155-74613174 None:intergenic 35.0%
! AGTTTTTAACCCCTGCAATA+TGG + chr3_4:74613228-74613247 Msa0521670:intron 35.0%
ACCGAAAATTCCATATTGCA+GGG - chr3_4:74613241-74613260 None:intergenic 35.0%
! TGATTGAATCGGTCTTTTGT+AGG + chr3_4:74613470-74613489 Msa0521670:intron 35.0%
CTGAAGACATCTTATCAACA+TGG - chr3_4:74613498-74613517 None:intergenic 35.0%
! ACTATTGATGACATGAGTGA+AGG + chr3_4:74613550-74613569 Msa0521670:CDS 35.0%
TGACATGAGTGAAGGTTTAT+TGG + chr3_4:74613558-74613577 Msa0521670:CDS 35.0%
ATCGCGATTAATTATTCCTC+TGG + chr3_4:74613627-74613646 Msa0521670:intron 35.0%
GAATACATAAAATTGGCCCT+TGG - chr3_4:74613678-74613697 None:intergenic 35.0%
ACTAAATGCCAATTCAAACC+TGG + chr3_4:74613998-74614017 Msa0521670:intron 35.0%
AACAGCACAAAATTAGGCTA+TGG - chr3_4:74614090-74614109 None:intergenic 35.0%
!!! ATCTGGCTTTTGTGCATTTT+AGG + chr3_4:74614370-74614389 Msa0521670:intron 35.0%
TAACAGGCTAAACAAAACGA+AGG + chr3_4:74614433-74614452 Msa0521670:CDS 35.0%
ATCTAGCCATTTAGTCATTG+TGG + chr3_4:74614592-74614611 Msa0521670:intron 35.0%
TAGACACCACAATGACTAAA+TGG - chr3_4:74614601-74614620 None:intergenic 35.0%
GTGGTGTCTAATGTACAATA+TGG + chr3_4:74614611-74614630 Msa0521670:intron 35.0%
TCAGCTGAGTCGAATTAAAT+TGG - chr3_4:74614640-74614659 None:intergenic 35.0%
! AGCTGATCTTGTTATCTATG+CGG + chr3_4:74614654-74614673 Msa0521670:intron 35.0%
!!! CAGGCTAGTGATTATTTTAG+AGG + chr3_4:74615049-74615068 Msa0521670:intron 35.0%
CATCCTAAAGAACAACAAGA+TGG - chr3_4:74615504-74615523 None:intergenic 35.0%
! TTATCTTTTCCTCTGTCCTA+AGG + chr3_4:74615763-74615782 Msa0521670:intron 35.0%
TTGTTGAGAATTTGAGGATC+GGG + chr3_4:74615851-74615870 Msa0521670:CDS 35.0%
! CTAGTCTTTCTATTTCCTCA+CGG - chr3_4:74616024-74616043 None:intergenic 35.0%
GGAGGATTTCATGTAAACAT+TGG + chr3_4:74616153-74616172 Msa0521670:exon 35.0%
TGTGTACCCAATTGTGATTT+AGG + chr3_4:74616284-74616303 Msa0521670:three_prime_UTR 35.0%
GTGTACCCAATTGTGATTTA+GGG + chr3_4:74616285-74616304 Msa0521670:three_prime_UTR 35.0%
GGAGAATATTAAATAGGGAG+GGG + chr3_4:74616313-74616332 Msa0521670:three_prime_UTR 35.0%
!! TTGGTTTTCATACCTTGTGA+TGG + chr3_4:74616348-74616367 Msa0521670:three_prime_UTR 35.0%
TCAGGTATATAACCATCACA+AGG - chr3_4:74616363-74616382 None:intergenic 35.0%
AACGAGGAGCTCATCAAATA+CGG + chr3_4:74612509-74612528 Msa0521670:CDS 40.0%
TGTTTATGTGGCTCATGGTT+AGG + chr3_4:74612755-74612774 Msa0521670:intron 40.0%
CCGAAAATTCCATATTGCAG+GGG - chr3_4:74613240-74613259 None:intergenic 40.0%
! CCCCTGCAATATGGAATTTT+CGG + chr3_4:74613237-74613256 Msa0521670:intron 40.0%
GACCGAAAATTCCATATTGC+AGG - chr3_4:74613242-74613261 None:intergenic 40.0%
TCTTCCAGTATAGATCTCGA+GGG + chr3_4:74613279-74613298 Msa0521670:intron 40.0%
!! TCTGAAAGGCTAAGAGCATT+TGG + chr3_4:74613740-74613759 Msa0521670:intron 40.0%
GCACAAAATTAGGCTATGGA+AGG - chr3_4:74614086-74614105 None:intergenic 40.0%
! TTGATGTTGTTTACACTCCC+TGG + chr3_4:74614160-74614179 Msa0521670:CDS 40.0%
!!! TTTTTTTGCAGTAGTTGGGG+TGG + chr3_4:74614309-74614328 Msa0521670:intron 40.0%
! GCTGATCTTGTTATCTATGC+GGG + chr3_4:74614655-74614674 Msa0521670:intron 40.0%
AAATCTGTACACTTGCATCC+AGG + chr3_4:74614882-74614901 Msa0521670:intron 40.0%
TTGTTTCGAAGCACAACCAT+TGG - chr3_4:74615342-74615361 None:intergenic 40.0%
GGTTGTGCTTCGAAACAAAT+TGG + chr3_4:74615344-74615363 Msa0521670:intron 40.0%
!!! GAATTTTAGAATCCAGCCCA+AGG + chr3_4:74615546-74615565 Msa0521670:intron 40.0%
AAGAAGACACCATGAACCTT+AGG - chr3_4:74615877-74615896 None:intergenic 40.0%
AGGAGAAACAATCAGAGCTT+AGG + chr3_4:74616047-74616066 Msa0521670:CDS 40.0%
TCCAACAAAGACATTGCTTC+AGG + chr3_4:74616106-74616125 Msa0521670:CDS 40.0%
TCCTGAAGCAATGTCTTTGT+TGG - chr3_4:74616110-74616129 None:intergenic 40.0%
TTCAGGAAGCAAATCATTCC+AGG + chr3_4:74616123-74616142 Msa0521670:CDS 40.0%
AAGCAAATCATTCCAGGAAG+TGG + chr3_4:74616129-74616148 Msa0521670:CDS 40.0%
TTGGCTTATAGACAGATGAC+TGG + chr3_4:74616179-74616198 Msa0521670:three_prime_UTR 40.0%
! CCAGTTGGGTTGTTTAATCA+TGG - chr3_4:74616219-74616238 None:intergenic 40.0%
CCATGATTAAACAACCCAAC+TGG + chr3_4:74616216-74616235 Msa0521670:three_prime_UTR 40.0%
TGCAGTTTCAGATTCCAGTT+GGG - chr3_4:74616233-74616252 None:intergenic 40.0%
ATGCAGTTTCAGATTCCAGT+TGG - chr3_4:74616234-74616253 None:intergenic 40.0%
CTGAAACTGCATCATTGTCT+TGG + chr3_4:74616242-74616261 Msa0521670:three_prime_UTR 40.0%
CTGCATCATTGTCTTGGTTA+AGG + chr3_4:74616248-74616267 Msa0521670:three_prime_UTR 40.0%
TCTTGGTTAAGGAAACCAAG+TGG + chr3_4:74616259-74616278 Msa0521670:three_prime_UTR 40.0%
!! TGGGTTAGGGTTCTGAGTTT+GGG - chr3_4:74612346-74612365 None:intergenic 45.0%
!! TTGGGTTAGGGTTCTGAGTT+TGG - chr3_4:74612347-74612366 None:intergenic 45.0%
TGGCGATTACACCATCTTCA+TGG + chr3_4:74612469-74612488 Msa0521670:CDS 45.0%
GGCGATTACACCATCTTCAT+GGG + chr3_4:74612470-74612489 Msa0521670:CDS 45.0%
CTTGTCAAGACCCATGAAGA+TGG - chr3_4:74612483-74612502 None:intergenic 45.0%
TCTTGACAAGTTCGAGAACG+AGG + chr3_4:74612493-74612512 Msa0521670:CDS 45.0%
ACGGTTTCATCGAAGACATC+TGG + chr3_4:74612528-74612547 Msa0521670:CDS 45.0%
GGTGATGTTTATGTGGCTCA+TGG + chr3_4:74612750-74612769 Msa0521670:intron 45.0%
CTCTTCCAGTATAGATCTCG+AGG + chr3_4:74613278-74613297 Msa0521670:intron 45.0%
CTTCCAGTATAGATCTCGAG+GGG + chr3_4:74613280-74613299 Msa0521670:intron 45.0%
CTTCAGCCCATGTTTATGTC+AGG + chr3_4:74613512-74613531 Msa0521670:CDS 45.0%
GTGCAGCCTGACATAAACAT+GGG - chr3_4:74613521-74613540 None:intergenic 45.0%
TGTGCAGCCTGACATAAACA+TGG - chr3_4:74613522-74613541 None:intergenic 45.0%
GTTTATGTCAGGCTGCACAA+AGG + chr3_4:74613523-74613542 Msa0521670:CDS 45.0%
TTAGTTGACCCAAGGACCAA+GGG + chr3_4:74613659-74613678 Msa0521670:intron 45.0%
AAAATTGGCCCTTGGTCCTT+GGG - chr3_4:74613670-74613689 None:intergenic 45.0%
TAAAATTGGCCCTTGGTCCT+TGG - chr3_4:74613671-74613690 None:intergenic 45.0%
GAACTAGGCCAGGTTTGAAT+TGG - chr3_4:74614009-74614028 None:intergenic 45.0%
AAAACTGCTTCGATGGACGT+TGG + chr3_4:74614195-74614214 Msa0521670:CDS 45.0%
CAGGCTAAACAAAACGAAGG+TGG + chr3_4:74614436-74614455 Msa0521670:CDS 45.0%
CATGGCAGGTAAAAAGACAG+CGG - chr3_4:74615393-74615412 None:intergenic 45.0%
TGAAGAGAATGCAACATGGC+AGG - chr3_4:74615407-74615426 None:intergenic 45.0%
TGCCATGTTGCATTCTCTTC+AGG + chr3_4:74615406-74615425 Msa0521670:intron 45.0%
GCCATGTTGCATTCTCTTCA+GGG + chr3_4:74615407-74615426 Msa0521670:intron 45.0%
AAGAAGACACCGTGAACCTT+GGG - chr3_4:74615565-74615584 None:intergenic 45.0%
AAAGAAGACACCGTGAACCT+TGG - chr3_4:74615566-74615585 None:intergenic 45.0%
CTGCTATGTTGCATTCTCCT+CGG + chr3_4:74615716-74615735 Msa0521670:intron 45.0%
TGCTATGTTGCATTCTCCTC+GGG + chr3_4:74615717-74615736 Msa0521670:intron 45.0%
TAGTAGACAATTATGCCCCG+AGG - chr3_4:74615736-74615755 None:intergenic 45.0%
AAGTACTCAAGCAGTGCCTT+AGG - chr3_4:74615782-74615801 None:intergenic 45.0%
ATCAGAGCTTAGGAGCTACA+AGG + chr3_4:74616057-74616076 Msa0521670:CDS 45.0%
TCAGAGCTTAGGAGCTACAA+GGG + chr3_4:74616058-74616077 Msa0521670:CDS 45.0%
TAGGAGCTACAAGGGTTTGA+TGG + chr3_4:74616066-74616085 Msa0521670:CDS 45.0%
CAAATCATTCCAGGAAGTGG+AGG + chr3_4:74616132-74616151 Msa0521670:CDS 45.0%
GCTTATAGACAGATGACTGG+TGG + chr3_4:74616182-74616201 Msa0521670:three_prime_UTR 45.0%
AATTGGGTACACACACCACT+TGG - chr3_4:74616277-74616296 None:intergenic 45.0%
!! TGAGTCTTGTTAGGCTTGTC+AGG + chr3_4:74616466-74616485 Msa0521670:three_prime_UTR 45.0%
! AGGGAAAGTGCGTTGGGTTA+GGG - chr3_4:74612359-74612378 None:intergenic 50.0%
TGGTGTAATCGCCAGCTTCA+GGG - chr3_4:74612463-74612482 None:intergenic 50.0%
ATGGTGTAATCGCCAGCTTC+AGG - chr3_4:74612464-74612483 None:intergenic 50.0%
GGCATTGCCAATCATAGCCA+TGG - chr3_4:74612829-74612848 None:intergenic 50.0%
AAGCCCCTCGAGATCTATAC+TGG - chr3_4:74613286-74613305 None:intergenic 50.0%
CAACTAAGCGGATAGACCAG+AGG - chr3_4:74613646-74613665 None:intergenic 50.0%
CTATCCGCTTAGTTGACCCA+AGG + chr3_4:74613651-74613670 Msa0521670:intron 50.0%
TGGTCCTTGGGTCAACTAAG+CGG - chr3_4:74613658-74613677 None:intergenic 50.0%
CTTAGTTGACCCAAGGACCA+AGG + chr3_4:74613658-74613677 Msa0521670:intron 50.0%
CCTAGTATGAGAACTAGGCC+AGG - chr3_4:74614019-74614038 None:intergenic 50.0%
! CCTGGCCTAGTTCTCATACT+AGG + chr3_4:74614016-74614035 Msa0521670:intron 50.0%
TCGATGGACGTTGGTCAAGT+TGG + chr3_4:74614204-74614223 Msa0521670:CDS 50.0%
TTAGGTGCGAACTGTGAGAG+TGG + chr3_4:74614388-74614407 Msa0521670:intron 50.0%
GCCCTGAAGAGAATGCAACA+TGG - chr3_4:74615411-74615430 None:intergenic 50.0%
AAGAACTCAAGCAGTGCACC+AGG - chr3_4:74615470-74615489 None:intergenic 50.0%
AGAATCCAGCCCAAGGTTCA+CGG + chr3_4:74615553-74615572 Msa0521670:intron 50.0%
GCTATGTTGCATTCTCCTCG+GGG + chr3_4:74615718-74615737 Msa0521670:intron 50.0%
GAATTTGAGGATCGGGCCTA+AGG + chr3_4:74615858-74615877 Msa0521670:CDS 50.0%
ATCATTCCAGGAAGTGGAGG+AGG + chr3_4:74616135-74616154 Msa0521670:CDS 50.0%
TGAAATCCTCCTCCACTTCC+TGG - chr3_4:74616144-74616163 None:intergenic 50.0%
GGAGGGGAGAATGCAATGAT+TGG + chr3_4:74616329-74616348 Msa0521670:three_prime_UTR 50.0%
! GAGGGAAAGTGCGTTGGGTT+AGG - chr3_4:74612360-74612379 None:intergenic 55.0%
! GAGAGGAGGGAAAGTGCGTT+GGG - chr3_4:74612365-74612384 None:intergenic 55.0%
TTCAAAGCACGCCCTGAAGC+TGG + chr3_4:74612449-74612468 Msa0521670:CDS 55.0%
TTTGCAGTAGTTGGGGTGGC+TGG + chr3_4:74614313-74614332 Msa0521670:intron 55.0%
TTGCAGTAGTTGGGGTGGCT+GGG + chr3_4:74614314-74614333 Msa0521670:intron 55.0%
CTGCTGCTGAAAGAGCTGAG+AGG + chr3_4:74614710-74614729 Msa0521670:CDS 55.0%
CAAGCAGTGCACCAGGACAT+AGG - chr3_4:74615463-74615482 None:intergenic 55.0%
CAAGCAGTGCCTTAGGACAG+AGG - chr3_4:74615775-74615794 None:intergenic 55.0%
AGGATCGGGCCTAAGGTTCA+TGG + chr3_4:74615865-74615884 Msa0521670:intron 55.0%
! CGAGAGGAGGGAAAGTGCGT+TGG - chr3_4:74612366-74612385 None:intergenic 60.0%
CACGCACGAACACGAGAGGA+GGG - chr3_4:74612378-74612397 None:intergenic 60.0%
! CTCGAGGGGCTTGCTCTTTC+TGG + chr3_4:74613294-74613313 Msa0521670:intron 60.0%
AGACACCGTGAACCTTGGGC+TGG - chr3_4:74615561-74615580 None:intergenic 60.0%
GCACGCACGAACACGAGAGG+AGG - chr3_4:74612379-74612398 None:intergenic 65.0%
CACGCACGCACGAACACGAG+AGG - chr3_4:74612382-74612401 None:intergenic 65.0%
!! CTGTGTGCAGAAGCGCCGTG+AGG + chr3_4:74616006-74616025 Msa0521670:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 74612250 74616585 74612250 ID=Msa0521670;Name=Msa0521670
chr3_4 mRNA 74612250 74616585 74612250 ID=Msa0521670-mRNA-1;Parent=Msa0521670;Name=Msa0521670-mRNA-1;_AED=0.06;_eAED=0.06;_QI=167|0.71|0.87|0.87|0.85|0.75|8|417|231
chr3_4 exon 74612250 74612390 74612250 ID=Msa0521670-mRNA-1:exon:21126;Parent=Msa0521670-mRNA-1
chr3_4 exon 74612411 74612549 74612411 ID=Msa0521670-mRNA-1:exon:21127;Parent=Msa0521670-mRNA-1
chr3_4 exon 74613492 74613619 74613492 ID=Msa0521670-mRNA-1:exon:21128;Parent=Msa0521670-mRNA-1
chr3_4 exon 74614142 74614245 74614142 ID=Msa0521670-mRNA-1:exon:21129;Parent=Msa0521670-mRNA-1
chr3_4 exon 74614392 74614479 74614392 ID=Msa0521670-mRNA-1:exon:21130;Parent=Msa0521670-mRNA-1
chr3_4 exon 74614692 74614753 74614692 ID=Msa0521670-mRNA-1:exon:21131;Parent=Msa0521670-mRNA-1
chr3_4 exon 74615832 74615879 74615832 ID=Msa0521670-mRNA-1:exon:21132;Parent=Msa0521670-mRNA-1
chr3_4 exon 74616016 74616585 74616016 ID=Msa0521670-mRNA-1:exon:21133;Parent=Msa0521670-mRNA-1
chr3_4 five_prime_UTR 74612250 74612390 74612250 ID=Msa0521670-mRNA-1:five_prime_utr;Parent=Msa0521670-mRNA-1
chr3_4 five_prime_UTR 74612411 74612436 74612411 ID=Msa0521670-mRNA-1:five_prime_utr;Parent=Msa0521670-mRNA-1
chr3_4 CDS 74612437 74612549 74612437 ID=Msa0521670-mRNA-1:cds;Parent=Msa0521670-mRNA-1
chr3_4 CDS 74613492 74613619 74613492 ID=Msa0521670-mRNA-1:cds;Parent=Msa0521670-mRNA-1
chr3_4 CDS 74614142 74614245 74614142 ID=Msa0521670-mRNA-1:cds;Parent=Msa0521670-mRNA-1
chr3_4 CDS 74614392 74614479 74614392 ID=Msa0521670-mRNA-1:cds;Parent=Msa0521670-mRNA-1
chr3_4 CDS 74614692 74614753 74614692 ID=Msa0521670-mRNA-1:cds;Parent=Msa0521670-mRNA-1
chr3_4 CDS 74615832 74615879 74615832 ID=Msa0521670-mRNA-1:cds;Parent=Msa0521670-mRNA-1
chr3_4 CDS 74616016 74616168 74616016 ID=Msa0521670-mRNA-1:cds;Parent=Msa0521670-mRNA-1
chr3_4 three_prime_UTR 74616169 74616585 74616169 ID=Msa0521670-mRNA-1:three_prime_utr;Parent=Msa0521670-mRNA-1
Gene Sequence

>Msa0521670

ATGGTGTTCTACTTCAAAGCACGCCCTGAAGCTGGCGATTACACCATCTTCATGGGTCTTGACAAGTTCGAGAACGAGGAGCTCATCAAATACGGTTTCATCGAAGACATCTGGTTCCATGTTGATAAGATGTCTTCAGCCCATGTTTATGTCAGGCTGCACAAAGGTCAAACTATTGATGACATGAGTGAAGGTTTATTGGAAGACTGTGCTCAACTTGTCAAAGCAAATTCAATTCAAGGGAATAAAGTAAACAACGTTGATGTTGTTTACACTCCCTGGTCCAATTTAAAGAAAACTGCTTCGATGGACGTTGGTCAAGTTGGTTTTCACAACTCAAAAATGGTGCGAACTGTGAGAGTGGAGAAGAAGATAAATGAGATTGTTAACAGGCTAAACAAAACGAAGGTGGAAAGAAAACCTGATTTGAAAGCTGAGCGAGAAGCAATTGCTGCTGCTGAAAGAGCTGAGAGGAAACATCAACTGAGAGAAAAAGATGTTATATTTGTGAACTTTGTTGAGAATTTGAGGATCGGGCCTAAGAAGCGCCGTGAGGAAATAGAAAGACTAGAAAAGGAGAAACAATCAGAGCTTAGGAGCTACAAGGGTTTGATGGTCGCAGAAAATATGACATCCAACAAAGACATTGCTTCAGGAAGCAAATCATTCCAGGAAGTGGAGGAGGATTTCATGTAA

Protein sequence

>Msa0521670

MVFYFKARPEAGDYTIFMGLDKFENEELIKYGFIEDIWFHVDKMSSAHVYVRLHKGQTIDDMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKKINEIVNRLNKTKVERKPDLKAEREAIAAAERAERKHQLREKDVIFVNFVENLRIGPKKRREEIERLEKEKQSELRSYKGLMVAENMTSNKDIASGSKSFQEVEEDFM*