AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0149300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149300 MtrunA17_Chr1g0146811 96.604 265 9 0 1 265 1 265 0.0 534
Msa0149300 MtrunA17_Chr4g0028911 32.143 252 169 2 6 256 14 264 8.13e-36 129
Msa0149300 MtrunA17_Chr4g0028921 32.143 252 169 2 6 256 14 264 9.44e-36 128
Msa0149300 MtrunA17_Chr1g0171831 30.204 245 164 3 6 244 17 260 2.13e-29 111
Msa0149300 MtrunA17_Chr8g0357481 27.444 266 171 9 6 260 17 271 1.21e-13 69.3
Msa0149300 MtrunA17_Chr4g0026001 26.154 260 166 8 6 256 17 259 3.99e-13 67.8
Msa0149300 MtrunA17_Chr7g0266981 24.812 266 181 7 6 264 16 269 4.49e-13 67.4
Msa0149300 MtrunA17_Chr4g0044111 24.436 266 182 7 6 264 16 269 3.20e-12 65.1
Msa0149300 MtrunA17_Chr4g0025981 25.191 262 170 8 6 258 44 288 3.59e-12 65.5
Msa0149300 MtrunA17_Chr4g0025971 25.385 260 168 8 6 256 17 259 4.09e-11 62.0
Msa0149300 MtrunA17_Chr4g0075531 27.386 241 157 7 18 252 18 246 6.10e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149300 AT3G01980.1 60.526 266 104 1 1 265 1 266 3.55e-120 344
Msa0149300 AT3G01980.4 60.526 266 104 1 1 265 1 266 3.55e-120 344
Msa0149300 AT3G01980.3 54.392 296 104 2 1 265 1 296 4.62e-113 327
Msa0149300 AT3G01980.5 58.650 237 97 1 30 265 6 242 1.94e-101 296
Msa0149300 AT3G01980.6 55.747 174 76 1 1 173 1 174 4.01e-67 206
Msa0149300 AT3G01980.2 47.549 204 76 2 1 173 1 204 3.87e-60 189
Msa0149300 AT2G17845.1 33.203 256 164 6 6 256 50 303 2.57e-37 134
Msa0149300 AT1G63380.3 32.806 253 167 3 6 256 18 269 2.91e-37 133
Msa0149300 AT1G63380.1 32.806 253 167 3 6 256 20 271 2.95e-37 133
Msa0149300 AT1G63380.4 32.806 253 167 3 6 256 22 273 3.20e-37 133
Msa0149300 AT1G63380.2 32.806 253 167 3 6 256 25 276 3.69e-37 133
Msa0149300 AT3G55290.1 33.597 253 164 4 6 256 21 271 4.64e-37 132
Msa0149300 AT3G55290.2 33.597 253 164 4 6 256 20 270 4.68e-37 132
Msa0149300 AT1G62610.2 32.016 253 169 3 6 256 16 267 3.92e-36 130
Msa0149300 AT1G62610.1 32.016 253 169 3 6 256 17 268 3.93e-36 130
Msa0149300 AT1G62610.4 32.016 253 169 3 6 256 22 273 4.14e-36 130
Msa0149300 AT1G62610.3 32.016 253 169 3 6 256 18 269 4.19e-36 130
Msa0149300 AT3G55310.1 31.621 253 169 4 6 256 20 270 5.58e-34 124
Msa0149300 AT3G46170.1 30.435 253 172 4 6 256 29 279 5.62e-33 122
Msa0149300 AT2G29150.1 29.480 173 116 4 84 256 95 261 1.74e-13 68.9
Msa0149300 AT2G47140.1 26.337 243 158 7 25 259 28 257 7.05e-12 64.3

Find 118 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCGTCACAGTTAAAATT+TGG 0.112516 1_4:-10013048 Msa0149300:three_prime_UTR
TGATAAAGCTTGTAAGATTT+TGG 0.128439 1_4:-10016530 Msa0149300:CDS
TGCATCCTTGTTTGGCTAAA+TGG 0.134190 1_4:+10016768 None:intergenic
GATATCACACAGTTAAAATT+TGG 0.136241 1_4:-10013115 Msa0149300:three_prime_UTR
AACAAATAATGTATTATTTC+GGG 0.178408 1_4:+10012631 None:intergenic
CTTTCCCTTCCCACCGATAA+TGG 0.206019 1_4:+10013391 None:intergenic
TGAATTGTGTAAGCAAAATT+TGG 0.212410 1_4:-10012788 Msa0149300:three_prime_UTR
TGTATTTATAACGTCGATAA+TGG 0.234136 1_4:-10015372 Msa0149300:CDS
CATTGTTTGCCCGTGCCTTT+AGG 0.236552 1_4:-10013016 Msa0149300:three_prime_UTR
GTAAAACCATTCAGTTTGTT+AGG 0.247891 1_4:-10012728 Msa0149300:three_prime_UTR
AAACAAATAATGTATTATTT+CGG 0.248249 1_4:+10012630 None:intergenic
AATGATTGAACCATGGTATT+AGG 0.275785 1_4:-10012908 Msa0149300:three_prime_UTR
TTCACACCTGCATCCTTGTT+TGG 0.299794 1_4:+10016760 None:intergenic
ATGGATAGTTGATAATTTAA+AGG 0.303331 1_4:+10017053 None:intergenic
GGAAGTGGTTGAATTGGATA+TGG 0.334118 1_4:-10016587 Msa0149300:CDS
GTTTGGTATGTGTAAAAGTT+TGG 0.345644 1_4:+10017023 None:intergenic
ATTCGTCACAGTTAAAATTT+GGG 0.347921 1_4:-10013047 Msa0149300:three_prime_UTR
AAGGGAAAGGGCAGAGAAGT+TGG 0.349755 1_4:-10013377 Msa0149300:CDS
CTGTGCTCCATCAACATATA+TGG 0.350340 1_4:+10013249 None:intergenic
ATTCTACACACCTCTCTTCC+AGG 0.351963 1_4:+10012883 None:intergenic
CTGGAGTTCAGCAGTTAGTT+CGG 0.353967 1_4:-10015298 Msa0149300:CDS
CTGTTAACTCAAGATGATCT+TGG 0.368618 1_4:+10015498 None:intergenic
GACGAATCATGTCATATCTA+TGG 0.372801 1_4:+10013063 None:intergenic
TGTTGAAGTTCCGCATCCTT+TGG 0.387285 1_4:+10015408 None:intergenic
TTTCCCTTCCCACCGATAAT+GGG 0.391273 1_4:+10013392 None:intergenic
TGTTGTGGAAGTGGTTGAAT+TGG 0.391516 1_4:-10016593 Msa0149300:CDS
GTATTTATAACGTCGATAAT+GGG 0.394081 1_4:-10015371 Msa0149300:CDS
GCATATGCCTCAGCCTTGGC+TGG 0.394449 1_4:-10015317 Msa0149300:CDS
TTGTGAAACACGTTCTTGTT+TGG 0.396107 1_4:+10016981 None:intergenic
TGCTGCATATGCCTCAGCCT+TGG 0.396535 1_4:-10015321 Msa0149300:CDS
CAGAGAAATAGAGGACATAA+TGG 0.396914 1_4:-10012853 Msa0149300:three_prime_UTR
GTTAATTGTTATTCTTATGA+AGG 0.411867 1_4:-10016490 Msa0149300:intron
GTGAGTAATACTCTCTTTGT+TGG 0.413297 1_4:+10016827 None:intergenic
GAGGCATATGCAGCAGCTCC+TGG 0.414436 1_4:+10015329 None:intergenic
ATATCACACAGTTAAAATTT+GGG 0.416012 1_4:-10013114 Msa0149300:three_prime_UTR
TGGAGTTCAGCAGTTAGTTC+GGG 0.420239 1_4:-10015297 Msa0149300:intron
TACCATGGTTCAATCATTAG+AGG 0.426104 1_4:+10012913 None:intergenic
CAGGCATCGGCTATGGAGAT+AGG 0.432742 1_4:-10013472 Msa0149300:CDS
ATAATGGGAATTCATCTTCC+AGG 0.433329 1_4:+10013407 None:intergenic
TACTGATTCTGTTGTGGAAG+TGG 0.440619 1_4:-10016602 Msa0149300:CDS
TAAAACCATTCAGTTTGTTA+GGG 0.442469 1_4:-10012727 Msa0149300:three_prime_UTR
AGAAACATCGTCGCCATTTG+AGG 0.445396 1_4:+10016805 None:intergenic
ACACAGTTAAAATTTGGGTT+TGG 0.445437 1_4:-10013109 Msa0149300:three_prime_UTR
AGCTTCACTAAATAAATTTG+TGG 0.446349 1_4:-10012962 Msa0149300:three_prime_UTR
AAATTTGGTTATAAGAATGA+TGG 0.447407 1_4:-10012773 Msa0149300:three_prime_UTR
GGAAGATGAATTCCCATTAT+CGG 0.455189 1_4:-10013404 Msa0149300:CDS
GGCAGAGAAGTTGGTGAAAG+AGG 0.458842 1_4:-10013368 Msa0149300:CDS
CAATAGCATTAACTCTGATC+TGG 0.461612 1_4:+10013443 None:intergenic
CACATAAAGGAACGCATCCT+AGG 0.467073 1_4:+10013214 None:intergenic
CTTCCAGGGTCCTAATACCA+TGG 0.472428 1_4:+10012898 None:intergenic
TCAGAAAGAGGGCTTTATCC+AGG 0.475145 1_4:-10015347 Msa0149300:CDS
ATTCATGTTCAGAGAAATAG+AGG 0.475567 1_4:-10012862 Msa0149300:three_prime_UTR
AGAGTATTACTCACCTCAAA+TGG 0.476497 1_4:-10016818 Msa0149300:CDS
GTGGAAGAACAATCACATAA+AGG 0.476583 1_4:+10013201 None:intergenic
GCTTCACTAAATAAATTTGT+GGG 0.489772 1_4:-10012961 Msa0149300:three_prime_UTR
AGAGAAATAGAGGACATAAT+GGG 0.491979 1_4:-10012852 Msa0149300:three_prime_UTR
GGAACAACCATATATGTTGA+TGG 0.493494 1_4:-10013256 Msa0149300:CDS
TCTATCCCTAACAAACTGAA+TGG 0.496507 1_4:+10012722 None:intergenic
AGAAAGTATTGGTTCTCTAA+AGG 0.507330 1_4:-10012702 Msa0149300:three_prime_UTR
AATCATGTCATATCTATGGA+TGG 0.508782 1_4:+10013067 None:intergenic
GTCATCTATCTAATCAGTGA+TGG 0.511788 1_4:-10013295 Msa0149300:CDS
ATTATCGGTGGGAAGGGAAA+GGG 0.515455 1_4:-10013389 Msa0149300:CDS
TGAGAGTCATAGGAGAGAAG+TGG 0.520603 1_4:-10012815 Msa0149300:three_prime_UTR
CATTATCGGTGGGAAGGGAA+AGG 0.521918 1_4:-10013390 Msa0149300:CDS
TTCGTGTATTTGAGAGTCAT+AGG 0.522875 1_4:-10012825 Msa0149300:three_prime_UTR
TCGATAATGGGTTCAGAAAG+AGG 0.524746 1_4:-10015359 Msa0149300:CDS
GGAAAGTTTAAATTCAAACT+TGG 0.525877 1_4:-10017131 Msa0149300:five_prime_UTR
TGTGTACATCTAAAGCCTAA+AGG 0.530003 1_4:+10013001 None:intergenic
ATTTAGCCAAACAAGGATGC+AGG 0.531939 1_4:-10016766 Msa0149300:intron
AGGCTGTTGGCCAAAGGATG+CGG 0.532056 1_4:-10015418 Msa0149300:CDS
CGCACGAGAAAGTGACTCAA+AGG 0.532886 1_4:+10017087 None:intergenic
AATTTGGTTATAAGAATGAT+GGG 0.543040 1_4:-10012772 Msa0149300:three_prime_UTR
TTCAGTTACTGATTCTGTTG+TGG 0.546092 1_4:-10016608 Msa0149300:CDS
AAAGGAACGCATCCTAGGCC+TGG 0.552291 1_4:+10013219 None:intergenic
CTGAACTCCAGCCAAGGCTG+AGG 0.556384 1_4:+10015310 None:intergenic
TATTAAAGGCTGTTGGCCAA+AGG 0.558624 1_4:-10015424 Msa0149300:CDS
GAATTCGTTTCAATGCTCAC+TGG 0.560107 1_4:+10016866 None:intergenic
GTATTATTTCGGGAAATCAA+AGG 0.563932 1_4:+10012641 None:intergenic
GATGGGTCATGCTACATGAC+AGG 0.564383 1_4:-10013277 Msa0149300:CDS
TTGTTAGGGATAGAAAGTAT+TGG 0.569687 1_4:-10012713 Msa0149300:three_prime_UTR
GTATGTGTAAAAGTTTGGCT+AGG 0.571349 1_4:+10017028 None:intergenic
AATTCCCATTATCGGTGGGA+AGG 0.575283 1_4:-10013396 Msa0149300:CDS
ATCATGTCATATCTATGGAT+GGG 0.575755 1_4:+10013068 None:intergenic
ATTCCCATTATCGGTGGGAA+GGG 0.578456 1_4:-10013395 Msa0149300:CDS
GCTTTCCATTTAGCCAAACA+AGG 0.581958 1_4:-10016773 Msa0149300:CDS
CATCTAAAGCCTAAAGGCAC+GGG 0.583078 1_4:+10013007 None:intergenic
AGAGTTAATGCTATTGCAAG+AGG 0.584311 1_4:-10013436 Msa0149300:CDS
AGGCAGCACCACTTGAGAGA+TGG 0.586030 1_4:-10013348 Msa0149300:CDS
CACAGTCTATAACCAGGCCT+AGG 0.587077 1_4:-10013231 Msa0149300:CDS
TTATAAGAATGATGGGTGGA+AGG 0.587486 1_4:-10012765 Msa0149300:three_prime_UTR
CGATAATGGGTTCAGAAAGA+GGG 0.588137 1_4:-10015358 Msa0149300:CDS
GGAATTCATCTTCCAGGTGA+AGG 0.588874 1_4:+10013413 None:intergenic
TTCTACACACCTCTCTTCCA+GGG 0.588968 1_4:+10012884 None:intergenic
CTTTGAAAAGTTCCTCGCTG+TGG 0.590199 1_4:+10013182 None:intergenic
TCATCTATCTAATCAGTGAT+GGG 0.590549 1_4:-10013294 Msa0149300:CDS
TATTGCAAGAGGCCTTCACC+TGG 0.592366 1_4:-10013425 Msa0149300:CDS
GTAAAAGTTTGGCTAGGACA+TGG 0.592934 1_4:+10017034 None:intergenic
TGCGGAACTTCAACAAGGGT+GGG 0.594166 1_4:-10015400 Msa0149300:CDS
TATCGACGTTATAAATACAA+TGG 0.599236 1_4:+10015376 None:intergenic
ACATCAAGCCATCTCTCAAG+TGG 0.599720 1_4:+10013340 None:intergenic
ACATCTAAAGCCTAAAGGCA+CGG 0.601645 1_4:+10013006 None:intergenic
GCACGAGAAAGTGACTCAAA+GGG 0.602992 1_4:+10017088 None:intergenic
ATGCGGAACTTCAACAAGGG+TGG 0.606430 1_4:-10015401 Msa0149300:CDS
AGATGAATTCCCATTATCGG+TGG 0.607123 1_4:-10013401 Msa0149300:CDS
AATGGCGACGATGTTTCTCA+TGG 0.611517 1_4:-10016800 Msa0149300:CDS
CTAAAGGCACGGGCAAACAA+TGG 0.612207 1_4:+10013017 None:intergenic
GTATTAGGACCCTGGAAGAG+AGG 0.621345 1_4:-10012893 Msa0149300:three_prime_UTR
GAACCATGGTATTAGGACCC+TGG 0.634211 1_4:-10012901 Msa0149300:three_prime_UTR
AGGATGCGGAACTTCAACAA+GGG 0.642788 1_4:-10015404 Msa0149300:CDS
GATGAATTCCCATTATCGGT+GGG 0.643626 1_4:-10013400 Msa0149300:CDS
AAGGATGCGGAACTTCAACA+AGG 0.644362 1_4:-10015405 Msa0149300:CDS
TTGGTTATAAGAATGATGGG+TGG 0.649790 1_4:-10012769 Msa0149300:three_prime_UTR
ATGGAGCACAGTCTATAACC+AGG 0.654617 1_4:-10013237 Msa0149300:CDS
ATCCTCTAATGATTGAACCA+TGG 0.673858 1_4:-10012915 Msa0149300:three_prime_UTR
TAACTGCTGAACTCCAGCCA+AGG 0.675105 1_4:+10015304 None:intergenic
GTGATTGTTCTTCCACAGCG+AGG 0.677621 1_4:-10013194 Msa0149300:exon
CGAGAAAGTGACTCAAAGGG+AGG 0.703793 1_4:+10017091 None:intergenic
GTTCTTATAAATAAGACACG+AGG 0.771775 1_4:-10017152 Msa0149300:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTCATAATTATTATTTTAA+CGG + chr1_4:10015223-10015242 None:intergenic 10.0%
!! TTAAAATAATAATTATGAGA+AGG - chr1_4:10015223-10015242 Msa0149300:intron 10.0%
!! TGAAATAATAAATCTTTAAA+AGG - chr1_4:10015339-10015358 Msa0149300:CDS 10.0%
!!! GAAATAATAAATCTTTAAAA+GGG - chr1_4:10015340-10015359 Msa0149300:CDS 10.0%
!! AAACAAATAATGTATTATTT+CGG + chr1_4:10017162-10017181 None:intergenic 10.0%
!!! AAAAAATAATTGAAGAGTTT+TGG + chr1_4:10013057-10013076 None:intergenic 15.0%
!!! ATTTGACTTTATTTTAGAAA+TGG - chr1_4:10013538-10013557 Msa0149300:intron 15.0%
!!! AATAGTGAAGATAAATTTTA+TGG - chr1_4:10014330-10014349 Msa0149300:intron 15.0%
!! TAGCTTAATTAAGTATAAAT+TGG - chr1_4:10016151-10016170 Msa0149300:intron 15.0%
!! AACAAATAATGTATTATTTC+GGG + chr1_4:10017161-10017180 None:intergenic 15.0%
!!! ATGGATAGTTGATAATTTAA+AGG + chr1_4:10012739-10012758 None:intergenic 20.0%
!!! ACAACAAACTTTTTTTTGTT+TGG + chr1_4:10012786-10012805 None:intergenic 20.0%
!!! GTTAATTGTTATTCTTATGA+AGG - chr1_4:10013299-10013318 Msa0149300:CDS 20.0%
!! CAGTATTAAGTTAAGTTATA+AGG - chr1_4:10013356-10013375 Msa0149300:CDS 20.0%
!! TATTAAGTTAAGTTATAAGG+AGG - chr1_4:10013359-10013378 Msa0149300:CDS 20.0%
!! TTATGGAAAACTAAATTCAA+CGG + chr1_4:10013470-10013489 None:intergenic 20.0%
!! AATTAAGCAGTTTATTCAAA+CGG - chr1_4:10013608-10013627 Msa0149300:intron 20.0%
!! TATTTATCACAAACATGATA+GGG + chr1_4:10013674-10013693 None:intergenic 20.0%
!! ATATTTATCACAAACATGAT+AGG + chr1_4:10013675-10013694 None:intergenic 20.0%
!!! CTTATTTAGAGTTTCTTTTT+TGG + chr1_4:10014660-10014679 None:intergenic 20.0%
!!! TTAATGGATATGAAAAGAAA+AGG + chr1_4:10015470-10015489 None:intergenic 20.0%
!! TAATTTCTTACTAATGAGAT+AGG - chr1_4:10015806-10015825 Msa0149300:intron 20.0%
!! AATTTCTTACTAATGAGATA+GGG - chr1_4:10015807-10015826 Msa0149300:intron 20.0%
!!! TGGCATGATATAATTTTTTA+TGG - chr1_4:10015980-10015999 Msa0149300:intron 20.0%
!!! GGCATGATATAATTTTTTAT+GGG - chr1_4:10015981-10016000 Msa0149300:intron 20.0%
!!! TTTTACTTGCTTTTCATATT+TGG - chr1_4:10016196-10016215 Msa0149300:intron 20.0%
!!! AACTTTTATAGCAGATAATA+AGG + chr1_4:10016275-10016294 None:intergenic 20.0%
!! ATATCACACAGTTAAAATTT+GGG - chr1_4:10016675-10016694 Msa0149300:intron 20.0%
!! AAATTTGGTTATAAGAATGA+TGG - chr1_4:10017016-10017035 Msa0149300:five_prime_UTR 20.0%
!! AATTTGGTTATAAGAATGAT+GGG - chr1_4:10017017-10017036 Msa0149300:five_prime_UTR 20.0%
! GGAAAGTTTAAATTCAAACT+TGG - chr1_4:10012658-10012677 Msa0149300:three_prime_UTR 25.0%
!! ATGAATTTTTGTGTCTTTCT+AGG - chr1_4:10013102-10013121 Msa0149300:three_prime_UTR 25.0%
!! TGAATTTTTGTGTCTTTCTA+GGG - chr1_4:10013103-10013122 Msa0149300:three_prime_UTR 25.0%
!! AAGTATTGCACGAAAAATAA+CGG - chr1_4:10013157-10013176 Msa0149300:three_prime_UTR 25.0%
!! TGATAAAGCTTGTAAGATTT+TGG - chr1_4:10013259-10013278 Msa0149300:CDS 25.0%
!! GATAAAGCTTGTAAGATTTT+GGG - chr1_4:10013260-10013279 Msa0149300:CDS 25.0%
!! ATAAAGCTTGTAAGATTTTG+GGG - chr1_4:10013261-10013280 Msa0149300:CDS 25.0%
!! GCATAAAAGTTGATCATATA+AGG + chr1_4:10013577-10013596 None:intergenic 25.0%
! ATTAAGCAGTTTATTCAAAC+GGG - chr1_4:10013609-10013628 Msa0149300:intron 25.0%
!!! TGTGATAAATATGACTTGTT+TGG - chr1_4:10013683-10013702 Msa0149300:intron 25.0%
!! GTATTGAAAGTGATTTTGAA+GGG + chr1_4:10013720-10013739 None:intergenic 25.0%
!! TGTATTGAAAGTGATTTTGA+AGG + chr1_4:10013721-10013740 None:intergenic 25.0%
!!! TGATTTTGGCAAAAATTTAG+AGG - chr1_4:10013748-10013767 Msa0149300:intron 25.0%
! ATCAAAGATTGTTTCAGTTA+GGG + chr1_4:10013944-10013963 None:intergenic 25.0%
! ACAAGAAAATAGTCTCTAAA+TGG + chr1_4:10014169-10014188 None:intergenic 25.0%
!! AGTGAAGATAAATTTTATGG+CGG - chr1_4:10014333-10014352 Msa0149300:intron 25.0%
! TATCGACGTTATAAATACAA+TGG + chr1_4:10014416-10014435 None:intergenic 25.0%
! TGTATTTATAACGTCGATAA+TGG - chr1_4:10014417-10014436 Msa0149300:intron 25.0%
! GTATTTATAACGTCGATAAT+GGG - chr1_4:10014418-10014437 Msa0149300:intron 25.0%
! TCATTTATTTGAAAATCAGC+TGG - chr1_4:10014594-10014613 Msa0149300:intron 25.0%
! GATTGATAAAAGTAAAGAAC+AGG + chr1_4:10014630-10014649 None:intergenic 25.0%
!! ATAAGAAGATTTTCATGACT+TGG - chr1_4:10014675-10014694 Msa0149300:intron 25.0%
!!! GTAAATTCTTTTGACTTTCA+TGG - chr1_4:10014751-10014770 Msa0149300:intron 25.0%
! TCCTCTATTAAAGAATTCTT+CGG + chr1_4:10014843-10014862 None:intergenic 25.0%
! TAATTGGGTTAAATCAATGT+GGG + chr1_4:10014976-10014995 None:intergenic 25.0%
!! TTGTCATTTGGATTATATCT+TGG - chr1_4:10015072-10015091 Msa0149300:intron 25.0%
!! TTAGAAGCAGATATACTTTT+AGG - chr1_4:10015126-10015145 Msa0149300:intron 25.0%
!! AATAAATCTTTAAAAGGGAC+AGG - chr1_4:10015345-10015364 Msa0149300:CDS 25.0%
!! ATTTTGTATAGTAACTGAGA+TGG + chr1_4:10015421-10015440 None:intergenic 25.0%
! ACTCCAATGATGATAATTAA+CGG + chr1_4:10015628-10015647 None:intergenic 25.0%
! TGTAACAAAGGTTTAATGTT+AGG - chr1_4:10015656-10015675 Msa0149300:intron 25.0%
! TCAAAATCAAGGAAGTAATA+AGG + chr1_4:10015729-10015748 None:intergenic 25.0%
!!! CAAAAGAAAAAGGTACTATT+TGG - chr1_4:10015883-10015902 Msa0149300:intron 25.0%
! TTTGGAAATATTAGAAAGTC+TGG - chr1_4:10016214-10016233 Msa0149300:intron 25.0%
! ATTATCTGCTATAAAAGTTG+AGG - chr1_4:10016276-10016295 Msa0149300:intron 25.0%
! GATATCACACAGTTAAAATT+TGG - chr1_4:10016674-10016693 Msa0149300:intron 25.0%
! ATTCGTCACAGTTAAAATTT+GGG - chr1_4:10016742-10016761 Msa0149300:intron 25.0%
! AGCTTCACTAAATAAATTTG+TGG - chr1_4:10016827-10016846 Msa0149300:CDS 25.0%
! GCTTCACTAAATAAATTTGT+GGG - chr1_4:10016828-10016847 Msa0149300:CDS 25.0%
! TGAATTGTGTAAGCAAAATT+TGG - chr1_4:10017001-10017020 Msa0149300:five_prime_UTR 25.0%
!!! TAAAACCATTCAGTTTGTTA+GGG - chr1_4:10017062-10017081 Msa0149300:five_prime_UTR 25.0%
GTTCTTATAAATAAGACACG+AGG - chr1_4:10012637-10012656 Msa0149300:three_prime_UTR 30.0%
GTTTGGTATGTGTAAAAGTT+TGG + chr1_4:10012769-10012788 None:intergenic 30.0%
!! TGAATCTGTTTTTCATGATG+CGG - chr1_4:10013235-10013254 Msa0149300:CDS 30.0%
!! TTGTAAGATTTTGGGGAAAT+TGG - chr1_4:10013268-10013287 Msa0149300:CDS 30.0%
TTAAGTTATAAGGAGGTCTT+AGG - chr1_4:10013366-10013385 Msa0149300:CDS 30.0%
AAGCTATCTTGGAGAATTTA+TGG + chr1_4:10013487-10013506 None:intergenic 30.0%
TTAAGCAGTTTATTCAAACG+GGG - chr1_4:10013610-10013629 Msa0149300:intron 30.0%
! CAATACACTCTACATGATTT+TGG - chr1_4:10013734-10013753 Msa0149300:intron 30.0%
TTTGGCAAAAATTTAGAGGT+TGG - chr1_4:10013752-10013771 Msa0149300:intron 30.0%
ACTACTTGAATCTAAGCATT+TGG + chr1_4:10013872-10013891 None:intergenic 30.0%
GATCAAAGATTGTTTCAGTT+AGG + chr1_4:10013945-10013964 None:intergenic 30.0%
!!! GACTATTTTCTTGTTTTCGT+TGG - chr1_4:10014175-10014194 Msa0149300:intron 30.0%
TAGATTCACACAAACAAAGT+GGG + chr1_4:10014226-10014245 None:intergenic 30.0%
ATAGATTCACACAAACAAAG+TGG + chr1_4:10014227-10014246 None:intergenic 30.0%
! TGGTTTTTATTAAAGGCTGT+TGG - chr1_4:10014358-10014377 Msa0149300:intron 30.0%
AATGTTATCTGCAGAACAAA+AGG + chr1_4:10014557-10014576 None:intergenic 30.0%
!!! TAGAGTTTCTTTTTTGGCAA+CGG + chr1_4:10014654-10014673 None:intergenic 30.0%
CTAAAAAACTTCATCACACA+AGG + chr1_4:10014723-10014742 None:intergenic 30.0%
CCTCTATTAAAGAATTCTTC+GGG + chr1_4:10014842-10014861 None:intergenic 30.0%
CTAATTGGGTTAAATCAATG+TGG + chr1_4:10014977-10014996 None:intergenic 30.0%
!! AGTGTTGCTTGGTTAATTTA+TGG - chr1_4:10015003-10015022 Msa0149300:intron 30.0%
TCATTTGGATTATATCTTGG+TGG - chr1_4:10015075-10015094 Msa0149300:intron 30.0%
!! TTAATGGGGTATTGGTAAAA+AGG - chr1_4:10015277-10015296 Msa0149300:intron 30.0%
TAAGTTAGGGTAGAGATTAA+TGG + chr1_4:10015486-10015505 None:intergenic 30.0%
!! CAGTAGTTGGTAATAAGTTA+GGG + chr1_4:10015499-10015518 None:intergenic 30.0%
!! ACAGTAGTTGGTAATAAGTT+AGG + chr1_4:10015500-10015519 None:intergenic 30.0%
TGGTTGTAAATAACAGTAGT+TGG + chr1_4:10015512-10015531 None:intergenic 30.0%
CAGTTAGGTGATTAAATGAT+TGG + chr1_4:10015532-10015551 None:intergenic 30.0%
! ATGATGATAATTAACGGACA+AGG + chr1_4:10015622-10015641 None:intergenic 30.0%
TGTCCGTTAATTATCATCAT+TGG - chr1_4:10015622-10015641 Msa0149300:intron 30.0%
! ATTACTTCCTTGATTTTGAG+TGG - chr1_4:10015730-10015749 Msa0149300:intron 30.0%
TCAATTTCCTATTACAGTAG+AGG + chr1_4:10015760-10015779 None:intergenic 30.0%
TCTACTGTAATAGGAAATTG+AGG - chr1_4:10015759-10015778 Msa0149300:intron 30.0%
TTTCGCTAAGCAAAAGAAAA+AGG - chr1_4:10015873-10015892 Msa0149300:intron 30.0%
TTGAGATGATTATGTCAAAC+TGG - chr1_4:10015910-10015929 Msa0149300:intron 30.0%
TGAGATGATTATGTCAAACT+GGG - chr1_4:10015911-10015930 Msa0149300:intron 30.0%
AGCTGACAAATGAATTTCTT+TGG - chr1_4:10015943-10015962 Msa0149300:intron 30.0%
AGAAGTTTGAACAGATAGTT+AGG + chr1_4:10016050-10016069 None:intergenic 30.0%
! ACTTCTGTAATTTTATCCTG+CGG - chr1_4:10016064-10016083 Msa0149300:intron 30.0%
!!! GCTATCAATTTGTTTTGTTC+AGG - chr1_4:10016298-10016317 Msa0149300:intron 30.0%
!!! AATTTGTTTTGTTCAGGCAT+CGG - chr1_4:10016304-10016323 Msa0149300:intron 30.0%
TCATCTATCTAATCAGTGAT+GGG - chr1_4:10016495-10016514 Msa0149300:CDS 30.0%
! ACACAGTTAAAATTTGGGTT+TGG - chr1_4:10016680-10016699 Msa0149300:intron 30.0%
ATCATGTCATATCTATGGAT+GGG + chr1_4:10016724-10016743 None:intergenic 30.0%
AATCATGTCATATCTATGGA+TGG + chr1_4:10016725-10016744 None:intergenic 30.0%
GATTCGTCACAGTTAAAATT+TGG - chr1_4:10016741-10016760 Msa0149300:intron 30.0%
AATGATTGAACCATGGTATT+AGG - chr1_4:10016881-10016900 Msa0149300:five_prime_UTR 30.0%
ATTCATGTTCAGAGAAATAG+AGG - chr1_4:10016927-10016946 Msa0149300:five_prime_UTR 30.0%
AGAGAAATAGAGGACATAAT+GGG - chr1_4:10016937-10016956 Msa0149300:five_prime_UTR 30.0%
! GTAAAACCATTCAGTTTGTT+AGG - chr1_4:10017061-10017080 Msa0149300:five_prime_UTR 30.0%
! TTGTTAGGGATAGAAAGTAT+TGG - chr1_4:10017076-10017095 Msa0149300:five_prime_UTR 30.0%
!! AGAAAGTATTGGTTCTCTAA+AGG - chr1_4:10017087-10017106 Msa0149300:five_prime_UTR 30.0%
GTATTATTTCGGGAAATCAA+AGG + chr1_4:10017151-10017170 None:intergenic 30.0%
GTATGTGTAAAAGTTTGGCT+AGG + chr1_4:10012764-10012783 None:intergenic 35.0%
TTGTGAAACACGTTCTTGTT+TGG + chr1_4:10012811-10012830 None:intergenic 35.0%
GTGAGTAATACTCTCTTTGT+TGG + chr1_4:10012965-10012984 None:intergenic 35.0%
! AGAGTATTACTCACCTCAAA+TGG - chr1_4:10012971-10012990 Msa0149300:three_prime_UTR 35.0%
!! ATTTTTGTGTCTTTCTAGGG+TGG - chr1_4:10013106-10013125 Msa0149300:three_prime_UTR 35.0%
!! TTCAGTTACTGATTCTGTTG+TGG - chr1_4:10013181-10013200 Msa0149300:three_prime_UTR 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG + chr1_4:10013498-10013517 None:intergenic 35.0%
TCACTTTCACCAACAAACTT+AGG + chr1_4:10013636-10013655 None:intergenic 35.0%
! TTGTTGGTGAAAGTGATTCT+TGG - chr1_4:10013640-10013659 Msa0149300:intron 35.0%
GGTTCAGCATATACTATACA+AGG + chr1_4:10014010-10014029 None:intergenic 35.0%
ATAATGCCTAACATGTTGAC+AGG + chr1_4:10014044-10014063 None:intergenic 35.0%
TCAACATGTTAGGCATTATG+AGG - chr1_4:10014045-10014064 Msa0149300:intron 35.0%
TAACTAATGTATGCACCTTC+AGG - chr1_4:10014074-10014093 Msa0149300:intron 35.0%
ATTCATCAAAACAGTCCTGA+AGG + chr1_4:10014092-10014111 None:intergenic 35.0%
TTCTTTGATCTGCTTGAGAA+TGG - chr1_4:10014199-10014218 Msa0149300:intron 35.0%
AATCTATGAGCTGAACGAAT+TGG - chr1_4:10014240-10014259 Msa0149300:intron 35.0%
ATCTATGAGCTGAACGAATT+GGG - chr1_4:10014241-10014260 Msa0149300:intron 35.0%
! GGATTCTATTCATCTGAAAC+AGG - chr1_4:10014262-10014281 Msa0149300:intron 35.0%
CTGTTAACTCAAGATGATCT+TGG + chr1_4:10014294-10014313 None:intergenic 35.0%
! AGATAAATTTTATGGCGGCA+TGG - chr1_4:10014338-10014357 Msa0149300:intron 35.0%
!!! AGAGTTTCTTTTTTGGCAAC+GGG + chr1_4:10014653-10014672 None:intergenic 35.0%
CCCGAAGAATTCTTTAATAG+AGG - chr1_4:10014839-10014858 Msa0149300:intron 35.0%
! TTATGTCCCACCATTTTATG+TGG - chr1_4:10014928-10014947 Msa0149300:intron 35.0%
! TATGTCCCACCATTTTATGT+GGG - chr1_4:10014929-10014948 Msa0149300:intron 35.0%
GAAATGGAACCCACATAAAA+TGG + chr1_4:10014941-10014960 None:intergenic 35.0%
CTTGGTTAATTTATGGCTCA+TGG - chr1_4:10015010-10015029 Msa0149300:intron 35.0%
AGTTACTGCATTGTTTGTGT+TGG - chr1_4:10015043-10015062 Msa0149300:intron 35.0%
GTTACTGCATTGTTTGTGTT+GGG - chr1_4:10015044-10015063 Msa0149300:intron 35.0%
TGTTGGGTATACTTGTCATT+TGG - chr1_4:10015060-10015079 Msa0149300:intron 35.0%
AATTATGAGAAGGATGACGA+TGG - chr1_4:10015233-10015252 Msa0149300:intron 35.0%
ATTATGAGAAGGATGACGAT+GGG - chr1_4:10015234-10015253 Msa0149300:intron 35.0%
CTAGCTAATTCTCTTCTCAA+GGG - chr1_4:10015380-10015399 Msa0149300:CDS 35.0%
AACGAATAGAGTTGTCAGTT+AGG + chr1_4:10015547-10015566 None:intergenic 35.0%
AGGATTACCACTCAAAATCA+AGG + chr1_4:10015740-10015759 None:intergenic 35.0%
TGGTAATCCTCTACTGTAAT+AGG - chr1_4:10015750-10015769 Msa0149300:intron 35.0%
!! TCAAGTACTAGTATTGGCTT+CGG + chr1_4:10016023-10016042 None:intergenic 35.0%
GGAACTTCAAGTACTAGTAT+TGG + chr1_4:10016029-10016048 None:intergenic 35.0%
CAATAGCATTAACTCTGATC+TGG + chr1_4:10016349-10016368 None:intergenic 35.0%
AGAGTTAATGCTATTGCAAG+AGG - chr1_4:10016353-10016372 Msa0149300:intron 35.0%
! ATAATGGGAATTCATCTTCC+AGG + chr1_4:10016385-10016404 None:intergenic 35.0%
GGAAGATGAATTCCCATTAT+CGG - chr1_4:10016385-10016404 Msa0149300:intron 35.0%
GTCATCTATCTAATCAGTGA+TGG - chr1_4:10016494-10016513 Msa0149300:CDS 35.0%
GGAACAACCATATATGTTGA+TGG - chr1_4:10016533-10016552 Msa0149300:CDS 35.0%
GTGGAAGAACAATCACATAA+AGG + chr1_4:10016591-10016610 None:intergenic 35.0%
GACGAATCATGTCATATCTA+TGG + chr1_4:10016729-10016748 None:intergenic 35.0%
! TGTGTACATCTAAAGCCTAA+AGG + chr1_4:10016791-10016810 None:intergenic 35.0%
ATCCTCTAATGATTGAACCA+TGG - chr1_4:10016874-10016893 Msa0149300:five_prime_UTR 35.0%
TACCATGGTTCAATCATTAG+AGG + chr1_4:10016879-10016898 None:intergenic 35.0%
CAGAGAAATAGAGGACATAA+TGG - chr1_4:10016936-10016955 Msa0149300:five_prime_UTR 35.0%
TTCGTGTATTTGAGAGTCAT+AGG - chr1_4:10016964-10016983 Msa0149300:five_prime_UTR 35.0%
! TTGGTTATAAGAATGATGGG+TGG - chr1_4:10017020-10017039 Msa0149300:five_prime_UTR 35.0%
!! TTATAAGAATGATGGGTGGA+AGG - chr1_4:10017024-10017043 Msa0149300:five_prime_UTR 35.0%
TCTATCCCTAACAAACTGAA+TGG + chr1_4:10017070-10017089 None:intergenic 35.0%
GTAAAAGTTTGGCTAGGACA+TGG + chr1_4:10012758-10012777 None:intergenic 40.0%
GAATTCGTTTCAATGCTCAC+TGG + chr1_4:10012926-10012945 None:intergenic 40.0%
GCTTTCCATTTAGCCAAACA+AGG - chr1_4:10013016-10013035 Msa0149300:three_prime_UTR 40.0%
! TGCATCCTTGTTTGGCTAAA+TGG + chr1_4:10013024-10013043 None:intergenic 40.0%
ATTTAGCCAAACAAGGATGC+AGG - chr1_4:10013023-10013042 Msa0149300:three_prime_UTR 40.0%
!!! TCTTTCTAGGGTGGTTTTGA+TGG - chr1_4:10013115-10013134 Msa0149300:three_prime_UTR 40.0%
!!! CTTTCTAGGGTGGTTTTGAT+GGG - chr1_4:10013116-10013135 Msa0149300:three_prime_UTR 40.0%
!! TACTGATTCTGTTGTGGAAG+TGG - chr1_4:10013187-10013206 Msa0149300:three_prime_UTR 40.0%
TGTTGTGGAAGTGGTTGAAT+TGG - chr1_4:10013196-10013215 Msa0149300:exon 40.0%
GGAAGTGGTTGAATTGGATA+TGG - chr1_4:10013202-10013221 Msa0149300:exon 40.0%
! GTCTTAGGTTCGAATTTTCC+CGG - chr1_4:10013381-10013400 Msa0149300:CDS 40.0%
AACACATGAGTTGTTAGCAC+CGG + chr1_4:10013403-10013422 None:intergenic 40.0%
CAATGAAGATCGAATCGATC+CGG - chr1_4:10013902-10013921 Msa0149300:intron 40.0%
! GGCGGCATGGTTTTTATTAA+AGG - chr1_4:10014351-10014370 Msa0149300:intron 40.0%
TATTAAAGGCTGTTGGCCAA+AGG - chr1_4:10014365-10014384 Msa0149300:intron 40.0%
!! TCGATAATGGGTTCAGAAAG+AGG - chr1_4:10014430-10014449 Msa0149300:intron 40.0%
!! CGATAATGGGTTCAGAAAGA+GGG - chr1_4:10014431-10014450 Msa0149300:intron 40.0%
!!! GAGTTTCTTTTTTGGCAACG+GGG + chr1_4:10014652-10014671 None:intergenic 40.0%
TCAAACACTCGCTCTCTTAT+TGG - chr1_4:10014894-10014913 Msa0149300:intron 40.0%
CAAACACTCGCTCTCTTATT+GGG - chr1_4:10014895-10014914 Msa0149300:intron 40.0%
TGGAACCCACATAAAATGGT+GGG + chr1_4:10014937-10014956 None:intergenic 40.0%
ATGGAACCCACATAAAATGG+TGG + chr1_4:10014938-10014957 None:intergenic 40.0%
GGGTTCCATTTCCAAAATGT+AGG - chr1_4:10014949-10014968 Msa0149300:intron 40.0%
!! TGGGTCCTACATTTTGGAAA+TGG + chr1_4:10014957-10014976 None:intergenic 40.0%
! TCAATGTGGGTCCTACATTT+TGG + chr1_4:10014963-10014982 None:intergenic 40.0%
GCAACACTCACTCTCTAATT+GGG + chr1_4:10014991-10015010 None:intergenic 40.0%
AGCAACACTCACTCTCTAAT+TGG + chr1_4:10014992-10015011 None:intergenic 40.0%
! ATTAGAGAGTGAGTGTTGCT+TGG - chr1_4:10014992-10015011 Msa0149300:intron 40.0%
!! TTTTAGGAGTTGTCTCTGCA+TGG - chr1_4:10015142-10015161 Msa0149300:intron 40.0%
ATATAGTGTCCGGGGTTAAT+GGG - chr1_4:10015262-10015281 Msa0149300:intron 40.0%
GCTAGCTAATTCTCTTCTCA+AGG - chr1_4:10015379-10015398 Msa0149300:CDS 40.0%
AGTAACTGAGATGGTTGCAA+GGG + chr1_4:10015412-10015431 None:intergenic 40.0%
TAGTAACTGAGATGGTTGCA+AGG + chr1_4:10015413-10015432 None:intergenic 40.0%
GGAGAGTTCACAATAGAGAT+AGG + chr1_4:10015449-10015468 None:intergenic 40.0%
AATAAACAGTGCACTCTAGG+AGG + chr1_4:10015580-10015599 None:intergenic 40.0%
GAGAATAAACAGTGCACTCT+AGG + chr1_4:10015583-10015602 None:intergenic 40.0%
! GATAATTAACGGACAAGGTG+CGG + chr1_4:10015617-10015636 None:intergenic 40.0%
GAGTTGCATCGTTGTAACAA+AGG - chr1_4:10015644-10015663 Msa0149300:intron 40.0%
TCAAGGAAGTAATAAGGTGC+AGG + chr1_4:10015723-10015742 None:intergenic 40.0%
!! ACTAGTATTGGCTTCGGTAT+AGG + chr1_4:10016017-10016036 None:intergenic 40.0%
! CTGTAATTTTATCCTGCGGT+TGG - chr1_4:10016068-10016087 Msa0149300:intron 40.0%
! ATATTGACTAATCCAACCGC+AGG + chr1_4:10016083-10016102 None:intergenic 40.0%
CTATAACAGAGAAACTGCAC+AGG + chr1_4:10016124-10016143 None:intergenic 40.0%
AGATGAATTCCCATTATCGG+TGG - chr1_4:10016388-10016407 Msa0149300:intron 40.0%
GATGAATTCCCATTATCGGT+GGG - chr1_4:10016389-10016408 Msa0149300:intron 40.0%
CTGTGCTCCATCAACATATA+TGG + chr1_4:10016543-10016562 None:intergenic 40.0%
! ACATCTAAAGCCTAAAGGCA+CGG + chr1_4:10016786-10016805 None:intergenic 40.0%
GCACGAGAAAGTGACTCAAA+GGG + chr1_4:10012704-10012723 None:intergenic 45.0%
AGAAACATCGTCGCCATTTG+AGG + chr1_4:10012987-10013006 None:intergenic 45.0%
AATGGCGACGATGTTTCTCA+TGG - chr1_4:10012989-10013008 Msa0149300:three_prime_UTR 45.0%
TTCACACCTGCATCCTTGTT+TGG + chr1_4:10013032-10013051 None:intergenic 45.0%
ACACATGAGTTGTTAGCACC+GGG + chr1_4:10013402-10013421 None:intergenic 45.0%
TGTTGACAGGACTTGGCATT+TGG + chr1_4:10014031-10014050 None:intergenic 45.0%
CCTAACATGTTGACAGGACT+TGG + chr1_4:10014038-10014057 None:intergenic 45.0%
CCAAGTCCTGTCAACATGTT+AGG - chr1_4:10014035-10014054 Msa0149300:intron 45.0%
TGTTGAAGTTCCGCATCCTT+TGG + chr1_4:10014384-10014403 None:intergenic 45.0%
AAGGATGCGGAACTTCAACA+AGG - chr1_4:10014384-10014403 Msa0149300:intron 45.0%
AGGATGCGGAACTTCAACAA+GGG - chr1_4:10014385-10014404 Msa0149300:intron 45.0%
! TCAGAAAGAGGGCTTTATCC+AGG - chr1_4:10014442-10014461 Msa0149300:intron 45.0%
CTGGAGTTCAGCAGTTAGTT+CGG - chr1_4:10014491-10014510 Msa0149300:intron 45.0%
TGGAGTTCAGCAGTTAGTTC+GGG - chr1_4:10014492-10014511 Msa0149300:intron 45.0%
TAAGAGAGCGAGTGTTTGAG+AGG + chr1_4:10014893-10014912 None:intergenic 45.0%
!! ATGGGCACTGATATAGTGTC+CGG - chr1_4:10015252-10015271 Msa0149300:intron 45.0%
GATATAGTGTCCGGGGTTAA+TGG - chr1_4:10015261-10015280 Msa0149300:intron 45.0%
TATAGTGTCCGGGGTTAATG+GGG - chr1_4:10015263-10015282 Msa0149300:intron 45.0%
TACCAATACCCCATTAACCC+CGG + chr1_4:10015274-10015293 None:intergenic 45.0%
CTTTGGCTGTGATATCGATG+TGG - chr1_4:10015960-10015979 Msa0149300:intron 45.0%
!!! TTTTGTTCAGGCATCGGCTA+TGG - chr1_4:10016310-10016329 Msa0149300:intron 45.0%
GGAATTCATCTTCCAGGTGA+AGG + chr1_4:10016379-10016398 None:intergenic 45.0%
AATTCCCATTATCGGTGGGA+AGG - chr1_4:10016393-10016412 Msa0149300:intron 45.0%
ATTCCCATTATCGGTGGGAA+GGG - chr1_4:10016394-10016413 Msa0149300:intron 45.0%
TTTCCCTTCCCACCGATAAT+GGG + chr1_4:10016400-10016419 None:intergenic 45.0%
ATTATCGGTGGGAAGGGAAA+GGG - chr1_4:10016400-10016419 Msa0149300:intron 45.0%
ACATCAAGCCATCTCTCAAG+TGG + chr1_4:10016452-10016471 None:intergenic 45.0%
ATGGAGCACAGTCTATAACC+AGG - chr1_4:10016552-10016571 Msa0149300:CDS 45.0%
CACATAAAGGAACGCATCCT+AGG + chr1_4:10016578-10016597 None:intergenic 45.0%
! CTTTGAAAAGTTCCTCGCTG+TGG + chr1_4:10016610-10016629 None:intergenic 45.0%
! CACAGCGAGGAACTTTTCAA+AGG - chr1_4:10016608-10016627 Msa0149300:CDS 45.0%
! CATCTAAAGCCTAAAGGCAC+GGG + chr1_4:10016785-10016804 None:intergenic 45.0%
TTCTACACACCTCTCTTCCA+GGG + chr1_4:10016908-10016927 None:intergenic 45.0%
ATTCTACACACCTCTCTTCC+AGG + chr1_4:10016909-10016928 None:intergenic 45.0%
TGAGAGTCATAGGAGAGAAG+TGG - chr1_4:10016974-10016993 Msa0149300:five_prime_UTR 45.0%
CGAGAAAGTGACTCAAAGGG+AGG + chr1_4:10012701-10012720 None:intergenic 50.0%
CGCACGAGAAAGTGACTCAA+AGG + chr1_4:10012705-10012724 None:intergenic 50.0%
!!! TAGGGTGGTTTTGATGGGAG+AGG - chr1_4:10013121-10013140 Msa0149300:three_prime_UTR 50.0%
! TGTGTTGCTCCGACACCAAT+TGG - chr1_4:10013417-10013436 Msa0149300:CDS 50.0%
AATTGGACCCGGCTAATGGA+CGG - chr1_4:10013434-10013453 Msa0149300:CDS 50.0%
AATTCCACCGTCCATTAGCC+GGG + chr1_4:10013444-10013463 None:intergenic 50.0%
CAATTCCACCGTCCATTAGC+CGG + chr1_4:10013445-10013464 None:intergenic 50.0%
CAAACGGGGCCTAAGTTTGT+TGG - chr1_4:10013624-10013643 Msa0149300:intron 50.0%
! TCGATCCGGAGTATCTGAGT+TGG - chr1_4:10013916-10013935 Msa0149300:intron 50.0%
GGGTTCCAACTCAGATACTC+CGG + chr1_4:10013924-10013943 None:intergenic 50.0%
ATGCGGAACTTCAACAAGGG+TGG - chr1_4:10014388-10014407 Msa0149300:intron 50.0%
TGCGGAACTTCAACAAGGGT+GGG - chr1_4:10014389-10014408 Msa0149300:intron 50.0%
TAACTGCTGAACTCCAGCCA+AGG + chr1_4:10014488-10014507 None:intergenic 50.0%
!! TGGGCACTGATATAGTGTCC+GGG - chr1_4:10015253-10015272 Msa0149300:intron 50.0%
! AAACAGTGCACTCTAGGAGG+AGG + chr1_4:10015577-10015596 None:intergenic 50.0%
AGTGACTCTATCCTCCGAAG+TGG - chr1_4:10015693-10015712 Msa0149300:intron 50.0%
AAGGTGCAGGAAAGCCACTT+CGG + chr1_4:10015710-10015729 None:intergenic 50.0%
CAGAGAAACTGCACAGGACA+TGG + chr1_4:10016118-10016137 None:intergenic 50.0%
TATTGCAAGAGGCCTTCACC+TGG - chr1_4:10016364-10016383 Msa0149300:intron 50.0%
CTTTCCCTTCCCACCGATAA+TGG + chr1_4:10016401-10016420 None:intergenic 50.0%
CATTATCGGTGGGAAGGGAA+AGG - chr1_4:10016399-10016418 Msa0149300:intron 50.0%
AAGGGAAAGGGCAGAGAAGT+TGG - chr1_4:10016412-10016431 Msa0149300:intron 50.0%
!! GGCAGAGAAGTTGGTGAAAG+AGG - chr1_4:10016421-10016440 Msa0149300:intron 50.0%
GATGGGTCATGCTACATGAC+AGG - chr1_4:10016512-10016531 Msa0149300:CDS 50.0%
CACAGTCTATAACCAGGCCT+AGG - chr1_4:10016558-10016577 Msa0149300:CDS 50.0%
GTGATTGTTCTTCCACAGCG+AGG - chr1_4:10016595-10016614 Msa0149300:CDS 50.0%
! CTAAAGGCACGGGCAAACAA+TGG + chr1_4:10016775-10016794 None:intergenic 50.0%
CATTGTTTGCCCGTGCCTTT+AGG - chr1_4:10016773-10016792 Msa0149300:CDS 50.0%
GAACCATGGTATTAGGACCC+TGG - chr1_4:10016888-10016907 Msa0149300:five_prime_UTR 50.0%
CTTCCAGGGTCCTAATACCA+TGG + chr1_4:10016894-10016913 None:intergenic 50.0%
GTATTAGGACCCTGGAAGAG+AGG - chr1_4:10016896-10016915 Msa0149300:five_prime_UTR 50.0%
TAGCCGGGTCCAATTGGTGT+CGG + chr1_4:10013429-10013448 None:intergenic 55.0%
CACCAATTGGACCCGGCTAA+TGG - chr1_4:10013430-10013449 Msa0149300:CDS 55.0%
GTCCATTAGCCGGGTCCAAT+TGG + chr1_4:10013435-10013454 None:intergenic 55.0%
AGGCTGTTGGCCAAAGGATG+CGG - chr1_4:10014371-10014390 Msa0149300:intron 55.0%
TGCTGCATATGCCTCAGCCT+TGG - chr1_4:10014468-10014487 Msa0149300:intron 55.0%
!! GGGCACTGATATAGTGTCCG+GGG - chr1_4:10015254-10015273 Msa0149300:intron 55.0%
GTCCGGGGTTAATGGGGTAT+TGG - chr1_4:10015269-10015288 Msa0149300:intron 55.0%
! AGTGCACTCTAGGAGGAGGA+GGG + chr1_4:10015573-10015592 None:intergenic 55.0%
!! CAGGCATCGGCTATGGAGAT+AGG - chr1_4:10016317-10016336 Msa0149300:intron 55.0%
AGGCAGCACCACTTGAGAGA+TGG - chr1_4:10016441-10016460 Msa0149300:intron 55.0%
AAAGGAACGCATCCTAGGCC+TGG + chr1_4:10016573-10016592 None:intergenic 55.0%
GCTCCGACACCAATTGGACC+CGG - chr1_4:10013423-10013442 Msa0149300:CDS 60.0%
GAGGCATATGCAGCAGCTCC+TGG + chr1_4:10014463-10014482 None:intergenic 60.0%
GCATATGCCTCAGCCTTGGC+TGG - chr1_4:10014472-10014491 Msa0149300:intron 60.0%
CTGAACTCCAGCCAAGGCTG+AGG + chr1_4:10014482-10014501 None:intergenic 60.0%
! GTGCACTCTAGGAGGAGGAG+GGG + chr1_4:10015572-10015591 None:intergenic 60.0%
! CAGTGCACTCTAGGAGGAGG+AGG + chr1_4:10015574-10015593 None:intergenic 60.0%
GTGCAGGAAAGCCACTTCGG+AGG + chr1_4:10015707-10015726 None:intergenic 60.0%
! TGGACCCGGCTAATGGACGG+TGG - chr1_4:10013437-10013456 Msa0149300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 10012621 10017190 10012621 ID=Msa0149300;Name=Msa0149300
chr1_4 mRNA 10012621 10017190 10012621 ID=Msa0149300-mRNA-1;Parent=Msa0149300;Name=Msa0149300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=332|1|1|1|1|1|4|592|265
chr1_4 exon 10012621 10013491 10012621 ID=Msa0149300-mRNA-1:exon:4272;Parent=Msa0149300-mRNA-1
chr1_4 exon 10015298 10015527 10015298 ID=Msa0149300-mRNA-1:exon:4271;Parent=Msa0149300-mRNA-1
chr1_4 exon 10016491 10016687 10016491 ID=Msa0149300-mRNA-1:exon:4270;Parent=Msa0149300-mRNA-1
chr1_4 exon 10016767 10017190 10016767 ID=Msa0149300-mRNA-1:exon:4269;Parent=Msa0149300-mRNA-1
chr1_4 five_prime_UTR 10016859 10017190 10016859 ID=Msa0149300-mRNA-1:five_prime_utr;Parent=Msa0149300-mRNA-1
chr1_4 CDS 10016767 10016858 10016767 ID=Msa0149300-mRNA-1:cds;Parent=Msa0149300-mRNA-1
chr1_4 CDS 10016491 10016687 10016491 ID=Msa0149300-mRNA-1:cds;Parent=Msa0149300-mRNA-1
chr1_4 CDS 10015298 10015527 10015298 ID=Msa0149300-mRNA-1:cds;Parent=Msa0149300-mRNA-1
chr1_4 CDS 10013213 10013491 10013213 ID=Msa0149300-mRNA-1:cds;Parent=Msa0149300-mRNA-1
chr1_4 three_prime_UTR 10012621 10013212 10012621 ID=Msa0149300-mRNA-1:three_prime_utr;Parent=Msa0149300-mRNA-1
Gene Sequence

>Msa0149300

ATGACGAATCCAACAAAGAGAGTATTACTCACCTCAAATGGCGACGATGTTTCTCATGGCATTGCTTTCCATTTAGCCAAACAAGGATGCAGGGTGGTTTTGATGGGAGAGGCAAGTAGCTTACGAAGTATTGCACGAAAAATAACGGATTCAGTTACTGATTCTGTTGTGGAAGTGGTTGAATTGGATATGGAGAATGAGAATGAATCTGTTTTTCATGATGCGGTTGATAAAGCTTGTAAGATTTTGGGGAAATTGGATGCTTTTGTTAATTGTTATTCTTATGAAGGAAAGATCCAAGATCATCTTGAGTTAACAGAGAGTGAGTACAAAAAAATAGTGAAGATAAATTTTATGGCGGCATGGTTTTTATTAAAGGCTGTTGGCCAAAGGATGCGGAACTTCAACAAGGGTGGGTCCATTGTATTTATAACGTCGATAATGGGTTCAGAAAGAGGGCTTTATCCAGGAGCTGCTGCATATGCCTCAGCCTTGGCTGGAGTTCAGCAGTTAGTTCGGGCATCGGCTATGGAGATAGGTAAGTACCAGATCAGAGTTAATGCTATTGCAAGAGGCCTTCACCTGGAAGATGAATTCCCATTATCGGTGGGAAGGGAAAGGGCAGAGAAGTTGGTGAAAGAGGCAGCACCACTTGAGAGATGGCTTGATGTTAAGAATGATCTAGCTTCTACAGTCATCTATCTAATCAGTGATGGGTCATGCTACATGACAGGAACAACCATATATGTTGATGGAGCACAGTCTATAACCAGGCCTAGGATGCGTTCCTTTATGTGA

Protein sequence

>Msa0149300

MTNPTKRVLLTSNGDDVSHGIAFHLAKQGCRVVLMGEASSLRSIARKITDSVTDSVVEVVELDMENENESVFHDAVDKACKILGKLDAFVNCYSYEGKIQDHLELTESEYKKIVKINFMAAWFLLKAVGQRMRNFNKGGSIVFITSIMGSERGLYPGAAAYASALAGVQQLVRASAMEIGKYQIRVNAIARGLHLEDEFPLSVGRERAEKLVKEAAPLERWLDVKNDLASTVIYLISDGSCYMTGTTIYVDGAQSITRPRMRSFM*