AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0007990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007990 MtrunA17_Chr1g0146811 96.604 265 9 0 1 265 1 265 0.0 534
Msa0007990 MtrunA17_Chr4g0028911 32.143 252 169 2 6 256 14 264 8.13e-36 129
Msa0007990 MtrunA17_Chr4g0028921 32.143 252 169 2 6 256 14 264 9.44e-36 128
Msa0007990 MtrunA17_Chr1g0171831 30.204 245 164 3 6 244 17 260 2.13e-29 111
Msa0007990 MtrunA17_Chr8g0357481 27.444 266 171 9 6 260 17 271 1.21e-13 69.3
Msa0007990 MtrunA17_Chr4g0026001 26.154 260 166 8 6 256 17 259 3.99e-13 67.8
Msa0007990 MtrunA17_Chr7g0266981 24.812 266 181 7 6 264 16 269 4.49e-13 67.4
Msa0007990 MtrunA17_Chr4g0044111 24.436 266 182 7 6 264 16 269 3.20e-12 65.1
Msa0007990 MtrunA17_Chr4g0025981 25.191 262 170 8 6 258 44 288 3.59e-12 65.5
Msa0007990 MtrunA17_Chr4g0025971 25.385 260 168 8 6 256 17 259 4.09e-11 62.0
Msa0007990 MtrunA17_Chr4g0075531 27.386 241 157 7 18 252 18 246 6.10e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007990 AT3G01980.1 60.526 266 104 1 1 265 1 266 3.55e-120 344
Msa0007990 AT3G01980.4 60.526 266 104 1 1 265 1 266 3.55e-120 344
Msa0007990 AT3G01980.3 54.392 296 104 2 1 265 1 296 4.62e-113 327
Msa0007990 AT3G01980.5 58.650 237 97 1 30 265 6 242 1.94e-101 296
Msa0007990 AT3G01980.6 55.747 174 76 1 1 173 1 174 4.01e-67 206
Msa0007990 AT3G01980.2 47.549 204 76 2 1 173 1 204 3.87e-60 189
Msa0007990 AT2G17845.1 33.203 256 164 6 6 256 50 303 2.57e-37 134
Msa0007990 AT1G63380.3 32.806 253 167 3 6 256 18 269 2.91e-37 133
Msa0007990 AT1G63380.1 32.806 253 167 3 6 256 20 271 2.95e-37 133
Msa0007990 AT1G63380.4 32.806 253 167 3 6 256 22 273 3.20e-37 133
Msa0007990 AT1G63380.2 32.806 253 167 3 6 256 25 276 3.69e-37 133
Msa0007990 AT3G55290.1 33.597 253 164 4 6 256 21 271 4.64e-37 132
Msa0007990 AT3G55290.2 33.597 253 164 4 6 256 20 270 4.68e-37 132
Msa0007990 AT1G62610.2 32.016 253 169 3 6 256 16 267 3.92e-36 130
Msa0007990 AT1G62610.1 32.016 253 169 3 6 256 17 268 3.93e-36 130
Msa0007990 AT1G62610.4 32.016 253 169 3 6 256 22 273 4.14e-36 130
Msa0007990 AT1G62610.3 32.016 253 169 3 6 256 18 269 4.19e-36 130
Msa0007990 AT3G55310.1 31.621 253 169 4 6 256 20 270 5.58e-34 124
Msa0007990 AT3G46170.1 30.435 253 172 4 6 256 29 279 5.62e-33 122
Msa0007990 AT2G29150.1 29.480 173 116 4 84 256 95 261 1.74e-13 68.9
Msa0007990 AT2G47140.1 26.337 243 158 7 25 259 28 257 7.05e-12 64.3

Find 118 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCGTCACAGTTAAAATT+TGG 0.112516 1_1:-11538147 Msa0007990:three_prime_UTR
TGATAAAGCTTGTAAGATTT+TGG 0.128439 1_1:-11541630 Msa0007990:CDS
TGCATCCTTGTTTGGCTAAA+TGG 0.134190 1_1:+11541868 None:intergenic
GATATCACACAGTTAAAATT+TGG 0.136241 1_1:-11538214 Msa0007990:three_prime_UTR
AACAAATAATGTATTATTTC+GGG 0.178408 1_1:+11537730 None:intergenic
TGACTAACAGAGCATATTTA+AGG 0.181783 1_1:-11542308 None:intergenic
CTTTCCCTTCCCACCGATAA+TGG 0.206019 1_1:+11538490 None:intergenic
TGAATTGTGTAAGCAAAATT+TGG 0.212410 1_1:-11537887 Msa0007990:three_prime_UTR
TGTATTTATAACGTCGATAA+TGG 0.234136 1_1:-11540471 Msa0007990:CDS
CATTGTTTGCCCGTGCCTTT+AGG 0.236552 1_1:-11538115 Msa0007990:three_prime_UTR
GTAAAACCATTCAGTTTGTT+AGG 0.247891 1_1:-11537827 Msa0007990:three_prime_UTR
AAACAAATAATGTATTATTT+CGG 0.248249 1_1:+11537729 None:intergenic
AATGATTGAACCATGGTATT+AGG 0.275785 1_1:-11538007 Msa0007990:three_prime_UTR
TTCACACCTGCATCCTTGTT+TGG 0.299794 1_1:+11541860 None:intergenic
ATGGATAGTTGATAATTTAA+AGG 0.303331 1_1:+11542153 None:intergenic
GGAAGTGGTTGAATTGGATA+TGG 0.334118 1_1:-11541687 Msa0007990:CDS
GTTTGGTATGTGTAAAAGTT+TGG 0.345644 1_1:+11542123 None:intergenic
ATTCGTCACAGTTAAAATTT+GGG 0.347921 1_1:-11538146 Msa0007990:three_prime_UTR
AAGGGAAAGGGCAGAGAAGT+TGG 0.349755 1_1:-11538476 Msa0007990:CDS
CTGTGCTCCATCAACATATA+TGG 0.350340 1_1:+11538348 None:intergenic
ATTCTACACACCTCTCTTCC+AGG 0.351963 1_1:+11537982 None:intergenic
CTGGAGTTCAGCAGTTAGTT+CGG 0.353967 1_1:-11540397 Msa0007990:CDS
CTGTTAACTCAAGATGATCT+TGG 0.368618 1_1:+11540597 None:intergenic
GACGAATCATGTCATATCTA+TGG 0.372801 1_1:+11538162 None:intergenic
TGTTGAAGTTCCGCATCCTT+TGG 0.387285 1_1:+11540507 None:intergenic
TTTCCCTTCCCACCGATAAT+GGG 0.391273 1_1:+11538491 None:intergenic
TGTTGTGGAAGTGGTTGAAT+TGG 0.391516 1_1:-11541693 Msa0007990:CDS
GTATTTATAACGTCGATAAT+GGG 0.394081 1_1:-11540470 Msa0007990:CDS
GCATATGCCTCAGCCTTGGC+TGG 0.394449 1_1:-11540416 Msa0007990:CDS
TTGTGAAACACGTTCTTGTT+TGG 0.396107 1_1:+11542081 None:intergenic
TGCTGCATATGCCTCAGCCT+TGG 0.396535 1_1:-11540420 Msa0007990:CDS
CAGAGAAATAGAGGACATAA+TGG 0.396914 1_1:-11537952 Msa0007990:three_prime_UTR
GTTAATTGTTATTCTTATGA+AGG 0.411867 1_1:-11541590 Msa0007990:intron
GTGAGTAATACTCTCTTTGT+TGG 0.413297 1_1:+11541927 None:intergenic
GAGGCATATGCAGCAGCTCC+TGG 0.414436 1_1:+11540428 None:intergenic
ATATCACACAGTTAAAATTT+GGG 0.416012 1_1:-11538213 Msa0007990:three_prime_UTR
TGGAGTTCAGCAGTTAGTTC+GGG 0.420239 1_1:-11540396 Msa0007990:intron
TACCATGGTTCAATCATTAG+AGG 0.426104 1_1:+11538012 None:intergenic
CAGGCATCGGCTATGGAGAT+AGG 0.432742 1_1:-11538571 Msa0007990:CDS
GACTAACAGAGCATATTTAA+GGG 0.432775 1_1:-11542307 None:intergenic
ATAATGGGAATTCATCTTCC+AGG 0.433329 1_1:+11538506 None:intergenic
TACTGATTCTGTTGTGGAAG+TGG 0.440619 1_1:-11541702 Msa0007990:CDS
TAAAACCATTCAGTTTGTTA+GGG 0.442469 1_1:-11537826 Msa0007990:three_prime_UTR
AGAAACATCGTCGCCATTTG+AGG 0.445396 1_1:+11541905 None:intergenic
ACACAGTTAAAATTTGGGTT+TGG 0.445437 1_1:-11538208 Msa0007990:three_prime_UTR
AGCTTCACTAAATAAATTTG+TGG 0.446349 1_1:-11538061 Msa0007990:three_prime_UTR
AAATTTGGTTATAAGAATGA+TGG 0.447407 1_1:-11537872 Msa0007990:three_prime_UTR
GGAAGATGAATTCCCATTAT+CGG 0.455189 1_1:-11538503 Msa0007990:CDS
GGCAGAGAAGTTGGTGAAAG+AGG 0.458842 1_1:-11538467 Msa0007990:CDS
CAATAGCATTAACTCTGATC+TGG 0.461612 1_1:+11538542 None:intergenic
CACATAAAGGAACGCATCCT+AGG 0.467073 1_1:+11538313 None:intergenic
CTTCCAGGGTCCTAATACCA+TGG 0.472428 1_1:+11537997 None:intergenic
TCAGAAAGAGGGCTTTATCC+AGG 0.475145 1_1:-11540446 Msa0007990:CDS
ATTCATGTTCAGAGAAATAG+AGG 0.475567 1_1:-11537961 Msa0007990:three_prime_UTR
AGAGTATTACTCACCTCAAA+TGG 0.476497 1_1:-11541918 Msa0007990:CDS
GTGGAAGAACAATCACATAA+AGG 0.476583 1_1:+11538300 None:intergenic
GCTTCACTAAATAAATTTGT+GGG 0.489772 1_1:-11538060 Msa0007990:three_prime_UTR
AGAGAAATAGAGGACATAAT+GGG 0.491979 1_1:-11537951 Msa0007990:three_prime_UTR
GGAACAACCATATATGTTGA+TGG 0.493494 1_1:-11538355 Msa0007990:CDS
TCTATCCCTAACAAACTGAA+TGG 0.496507 1_1:+11537821 None:intergenic
AGAAAGTATTGGTTCTCTAA+AGG 0.507330 1_1:-11537801 Msa0007990:three_prime_UTR
AATCATGTCATATCTATGGA+TGG 0.508782 1_1:+11538166 None:intergenic
GTCATCTATCTAATCAGTGA+TGG 0.511788 1_1:-11538394 Msa0007990:CDS
ATTATCGGTGGGAAGGGAAA+GGG 0.515455 1_1:-11538488 Msa0007990:CDS
TGAGAGTCATAGGAGAGAAG+TGG 0.520603 1_1:-11537914 Msa0007990:three_prime_UTR
CATTATCGGTGGGAAGGGAA+AGG 0.521918 1_1:-11538489 Msa0007990:CDS
TTCGTGTATTTGAGAGTCAT+AGG 0.522875 1_1:-11537924 Msa0007990:three_prime_UTR
TCGATAATGGGTTCAGAAAG+AGG 0.524746 1_1:-11540458 Msa0007990:CDS
TGTGTACATCTAAAGCCTAA+AGG 0.530003 1_1:+11538100 None:intergenic
ATTTAGCCAAACAAGGATGC+AGG 0.531939 1_1:-11541866 Msa0007990:intron
AGGCTGTTGGCCAAAGGATG+CGG 0.532056 1_1:-11540517 Msa0007990:CDS
CGCACGAGAAAGTGACTCAA+AGG 0.532886 1_1:+11542187 None:intergenic
AATTTGGTTATAAGAATGAT+GGG 0.543040 1_1:-11537871 Msa0007990:three_prime_UTR
TTCAGTTACTGATTCTGTTG+TGG 0.546092 1_1:-11541708 Msa0007990:CDS
AAAGGAACGCATCCTAGGCC+TGG 0.552291 1_1:+11538318 None:intergenic
CTGAACTCCAGCCAAGGCTG+AGG 0.556384 1_1:+11540409 None:intergenic
TATTAAAGGCTGTTGGCCAA+AGG 0.558624 1_1:-11540523 Msa0007990:CDS
GAATTCGTTTCAATGCTCAC+TGG 0.560107 1_1:+11541966 None:intergenic
GTATTATTTCGGGAAATCAA+AGG 0.563932 1_1:+11537740 None:intergenic
GATGGGTCATGCTACATGAC+AGG 0.564383 1_1:-11538376 Msa0007990:CDS
TTGTTAGGGATAGAAAGTAT+TGG 0.569687 1_1:-11537812 Msa0007990:three_prime_UTR
GTATGTGTAAAAGTTTGGCT+AGG 0.571349 1_1:+11542128 None:intergenic
AATTCCCATTATCGGTGGGA+AGG 0.575283 1_1:-11538495 Msa0007990:CDS
ATCATGTCATATCTATGGAT+GGG 0.575755 1_1:+11538167 None:intergenic
ATTCCCATTATCGGTGGGAA+GGG 0.578456 1_1:-11538494 Msa0007990:CDS
GCTTTCCATTTAGCCAAACA+AGG 0.581958 1_1:-11541873 Msa0007990:CDS
CATCTAAAGCCTAAAGGCAC+GGG 0.583078 1_1:+11538106 None:intergenic
AGAGTTAATGCTATTGCAAG+AGG 0.584311 1_1:-11538535 Msa0007990:CDS
AGGCAGCACCACTTGAGAGA+TGG 0.586030 1_1:-11538447 Msa0007990:CDS
CACAGTCTATAACCAGGCCT+AGG 0.587077 1_1:-11538330 Msa0007990:CDS
TTATAAGAATGATGGGTGGA+AGG 0.587486 1_1:-11537864 Msa0007990:three_prime_UTR
CGATAATGGGTTCAGAAAGA+GGG 0.588137 1_1:-11540457 Msa0007990:CDS
GGAATTCATCTTCCAGGTGA+AGG 0.588874 1_1:+11538512 None:intergenic
TTCTACACACCTCTCTTCCA+GGG 0.588968 1_1:+11537983 None:intergenic
CTTTGAAAAGTTCCTCGCTG+TGG 0.590199 1_1:+11538281 None:intergenic
TCATCTATCTAATCAGTGAT+GGG 0.590549 1_1:-11538393 Msa0007990:CDS
TATTGCAAGAGGCCTTCACC+TGG 0.592366 1_1:-11538524 Msa0007990:CDS
GTAAAAGTTTGGCTAGGACA+TGG 0.592934 1_1:+11542134 None:intergenic
TGCGGAACTTCAACAAGGGT+GGG 0.594166 1_1:-11540499 Msa0007990:CDS
TATCGACGTTATAAATACAA+TGG 0.599236 1_1:+11540475 None:intergenic
ACATCAAGCCATCTCTCAAG+TGG 0.599720 1_1:+11538439 None:intergenic
ACATCTAAAGCCTAAAGGCA+CGG 0.601645 1_1:+11538105 None:intergenic
GCACGAGAAAGTGACTCAAA+GGG 0.602992 1_1:+11542188 None:intergenic
ATGCGGAACTTCAACAAGGG+TGG 0.606430 1_1:-11540500 Msa0007990:CDS
AGATGAATTCCCATTATCGG+TGG 0.607123 1_1:-11538500 Msa0007990:CDS
AATGGCGACGATGTTTCTCA+TGG 0.611517 1_1:-11541900 Msa0007990:CDS
CTAAAGGCACGGGCAAACAA+TGG 0.612207 1_1:+11538116 None:intergenic
GTATTAGGACCCTGGAAGAG+AGG 0.621345 1_1:-11537992 Msa0007990:three_prime_UTR
GAACCATGGTATTAGGACCC+TGG 0.634211 1_1:-11538000 Msa0007990:three_prime_UTR
AGGATGCGGAACTTCAACAA+GGG 0.642788 1_1:-11540503 Msa0007990:CDS
GATGAATTCCCATTATCGGT+GGG 0.643626 1_1:-11538499 Msa0007990:CDS
AAGGATGCGGAACTTCAACA+AGG 0.644362 1_1:-11540504 Msa0007990:CDS
TTGGTTATAAGAATGATGGG+TGG 0.649790 1_1:-11537868 Msa0007990:three_prime_UTR
ATGGAGCACAGTCTATAACC+AGG 0.654617 1_1:-11538336 Msa0007990:CDS
ATCCTCTAATGATTGAACCA+TGG 0.673858 1_1:-11538014 Msa0007990:three_prime_UTR
TAACTGCTGAACTCCAGCCA+AGG 0.675105 1_1:+11540403 None:intergenic
GTGATTGTTCTTCCACAGCG+AGG 0.677621 1_1:-11538293 Msa0007990:exon
CGAGAAAGTGACTCAAAGGG+AGG 0.703793 1_1:+11542191 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTCATAATTATTATTTTAA+CGG + chr1_1:11540355-11540374 None:intergenic 10.0%
!! TTAAAATAATAATTATGAGA+AGG - chr1_1:11540355-11540374 Msa0007990:intron 10.0%
!! TGAAATAATAAATCTTTAAA+AGG - chr1_1:11540471-11540490 Msa0007990:CDS 10.0%
!!! GAAATAATAAATCTTTAAAA+GGG - chr1_1:11540472-11540491 Msa0007990:CDS 10.0%
!! AAACAAATAATGTATTATTT+CGG + chr1_1:11542294-11542313 None:intergenic 10.0%
!!! AAAAAATAATTGAAGAGTTT+TGG + chr1_1:11538188-11538207 None:intergenic 15.0%
!!! ATTTGACTTTATTTTAGAAA+TGG - chr1_1:11538669-11538688 Msa0007990:intron 15.0%
!!! AATAGTGAAGATAAATTTTA+TGG - chr1_1:11539462-11539481 Msa0007990:intron 15.0%
!! TAGCTTAATTAAGTATAAAT+TGG - chr1_1:11541283-11541302 Msa0007990:intron 15.0%
!! AACAAATAATGTATTATTTC+GGG + chr1_1:11542293-11542312 None:intergenic 15.0%
!!! ATCTTCAAAAGTTTTCAATT+TGG + chr1_1:11537740-11537759 None:intergenic 20.0%
!!! TTGAAAACTTTTGAAGATAA+AGG - chr1_1:11537742-11537761 Msa0007990:three_prime_UTR 20.0%
!!! CTTATTTGTTGTTTTTGATT+TGG + chr1_1:11537769-11537788 None:intergenic 20.0%
!! TCAAAAACAACAAATAAGTT+AGG - chr1_1:11537771-11537790 Msa0007990:three_prime_UTR 20.0%
!! CAAAAACAACAAATAAGTTA+GGG - chr1_1:11537772-11537791 Msa0007990:three_prime_UTR 20.0%
!! AAAAACAACAAATAAGTTAG+GGG - chr1_1:11537773-11537792 Msa0007990:three_prime_UTR 20.0%
!!! ATGGATAGTTGATAATTTAA+AGG + chr1_1:11537870-11537889 None:intergenic 20.0%
!!! ACAACAAACTTTTTTTTGTT+TGG + chr1_1:11537917-11537936 None:intergenic 20.0%
!!! GTTAATTGTTATTCTTATGA+AGG - chr1_1:11538430-11538449 Msa0007990:CDS 20.0%
!! CAGTATTAAGTTAAGTTATA+AGG - chr1_1:11538487-11538506 Msa0007990:CDS 20.0%
!! TATTAAGTTAAGTTATAAGG+AGG - chr1_1:11538490-11538509 Msa0007990:CDS 20.0%
!! TTATGGAAAACTAAATTCAA+CGG + chr1_1:11538601-11538620 None:intergenic 20.0%
!! AATTAAGCAGTTTATTCAAA+CGG - chr1_1:11538739-11538758 Msa0007990:intron 20.0%
!! TATTTATCACAAACATGATA+GGG + chr1_1:11538805-11538824 None:intergenic 20.0%
!! ATATTTATCACAAACATGAT+AGG + chr1_1:11538806-11538825 None:intergenic 20.0%
!!! CTTATTTAGAGTTTCTTTTT+TGG + chr1_1:11539792-11539811 None:intergenic 20.0%
!!! ATAAGAAAATTTTCATGACT+TGG - chr1_1:11539807-11539826 Msa0007990:intron 20.0%
!!! TTAATGGATATGAAAAGAAA+AGG + chr1_1:11540602-11540621 None:intergenic 20.0%
!! TAATTTCTTACTAATGAGAT+AGG - chr1_1:11540938-11540957 Msa0007990:intron 20.0%
!! AATTTCTTACTAATGAGATA+GGG - chr1_1:11540939-11540958 Msa0007990:intron 20.0%
!!! TGGCATGATATAATTTTTTA+TGG - chr1_1:11541112-11541131 Msa0007990:intron 20.0%
!!! GGCATGATATAATTTTTTAT+GGG - chr1_1:11541113-11541132 Msa0007990:intron 20.0%
!!! TTTTACTTGCTTTTCATATT+TGG - chr1_1:11541328-11541347 Msa0007990:intron 20.0%
!!! AACTTTTATAGCAGATAATA+AGG + chr1_1:11541407-11541426 None:intergenic 20.0%
!! ATATCACACAGTTAAAATTT+GGG - chr1_1:11541807-11541826 Msa0007990:intron 20.0%
!! AAATTTGGTTATAAGAATGA+TGG - chr1_1:11542148-11542167 Msa0007990:five_prime_UTR 20.0%
!! AATTTGGTTATAAGAATGAT+GGG - chr1_1:11542149-11542168 Msa0007990:five_prime_UTR 20.0%
!! ATGAATTTTTGTGTCTTTCT+AGG - chr1_1:11538233-11538252 Msa0007990:three_prime_UTR 25.0%
!! TGAATTTTTGTGTCTTTCTA+GGG - chr1_1:11538234-11538253 Msa0007990:three_prime_UTR 25.0%
!! AAGTATTGCACGAAAAATAA+CGG - chr1_1:11538288-11538307 Msa0007990:three_prime_UTR 25.0%
!! TGATAAAGCTTGTAAGATTT+TGG - chr1_1:11538390-11538409 Msa0007990:CDS 25.0%
!! GATAAAGCTTGTAAGATTTT+GGG - chr1_1:11538391-11538410 Msa0007990:CDS 25.0%
!! ATAAAGCTTGTAAGATTTTG+GGG - chr1_1:11538392-11538411 Msa0007990:CDS 25.0%
!! GCATAAAAGTTGATCATATA+AGG + chr1_1:11538708-11538727 None:intergenic 25.0%
! ATTAAGCAGTTTATTCAAAC+GGG - chr1_1:11538740-11538759 Msa0007990:intron 25.0%
!!! TGTGATAAATATGACTTGTT+TGG - chr1_1:11538814-11538833 Msa0007990:intron 25.0%
!! GTATTGAAAGTGATTTTGAA+GGG + chr1_1:11538851-11538870 None:intergenic 25.0%
!! TGTATTGAAAGTGATTTTGA+AGG + chr1_1:11538852-11538871 None:intergenic 25.0%
!! AATACACTCTAACATGATTT+TGG - chr1_1:11538866-11538885 Msa0007990:intron 25.0%
!!! TGATTTTGGCAAAAATTTAG+AGG - chr1_1:11538880-11538899 Msa0007990:intron 25.0%
! ATCAAAGATTGTTTCAGTTA+GGG + chr1_1:11539076-11539095 None:intergenic 25.0%
! ACAAGAAAATAGTCTCTAAA+TGG + chr1_1:11539301-11539320 None:intergenic 25.0%
!! AGTGAAGATAAATTTTATGG+CGG - chr1_1:11539465-11539484 Msa0007990:intron 25.0%
! TATCGACGTTATAAATACAA+TGG + chr1_1:11539548-11539567 None:intergenic 25.0%
! TGTATTTATAACGTCGATAA+TGG - chr1_1:11539549-11539568 Msa0007990:intron 25.0%
! GTATTTATAACGTCGATAAT+GGG - chr1_1:11539550-11539569 Msa0007990:intron 25.0%
! TCATTTATTTGAAAATCAGC+TGG - chr1_1:11539726-11539745 Msa0007990:intron 25.0%
! GATTGATAAAAGTAAAGAAC+AGG + chr1_1:11539762-11539781 None:intergenic 25.0%
!!! GTAAATTCTTTTGACTTTCA+TGG - chr1_1:11539883-11539902 Msa0007990:intron 25.0%
! TCCTCTATTAAAGAATTCTT+CGG + chr1_1:11539975-11539994 None:intergenic 25.0%
! TAATTGGGTTAAATCAATGT+GGG + chr1_1:11540108-11540127 None:intergenic 25.0%
!! TTGTCATTTGGATTATATCT+TGG - chr1_1:11540204-11540223 Msa0007990:intron 25.0%
!! TTAGAAGCAGATATACTTTT+AGG - chr1_1:11540258-11540277 Msa0007990:intron 25.0%
!! AATAAATCTTTAAAAGGGAC+AGG - chr1_1:11540477-11540496 Msa0007990:CDS 25.0%
!! ATTTTGTATAGTAACTGAGA+TGG + chr1_1:11540553-11540572 None:intergenic 25.0%
! ACTCCAATGATGATAATTAA+CGG + chr1_1:11540760-11540779 None:intergenic 25.0%
! TGTAACAAAGGTTTAATGTT+AGG - chr1_1:11540788-11540807 Msa0007990:intron 25.0%
! TCAAAATCAAGGAAGTAATA+AGG + chr1_1:11540861-11540880 None:intergenic 25.0%
!!! CAAAAGAAAAAGGTACTATT+TGG - chr1_1:11541015-11541034 Msa0007990:intron 25.0%
! TTTGGAAATATTAGAAAGTC+TGG - chr1_1:11541346-11541365 Msa0007990:intron 25.0%
! ATTATCTGCTATAAAAGTTG+AGG - chr1_1:11541408-11541427 Msa0007990:intron 25.0%
! GATATCACACAGTTAAAATT+TGG - chr1_1:11541806-11541825 Msa0007990:intron 25.0%
! ATTCGTCACAGTTAAAATTT+GGG - chr1_1:11541874-11541893 Msa0007990:CDS 25.0%
! AGCTTCACTAAATAAATTTG+TGG - chr1_1:11541959-11541978 Msa0007990:five_prime_UTR 25.0%
! GCTTCACTAAATAAATTTGT+GGG - chr1_1:11541960-11541979 Msa0007990:five_prime_UTR 25.0%
! TGAATTGTGTAAGCAAAATT+TGG - chr1_1:11542133-11542152 Msa0007990:five_prime_UTR 25.0%
!!! TAAAACCATTCAGTTTGTTA+GGG - chr1_1:11542194-11542213 Msa0007990:five_prime_UTR 25.0%
GTTTGGTATGTGTAAAAGTT+TGG + chr1_1:11537900-11537919 None:intergenic 30.0%
!! TGAATCTGTTTTTCATGATG+CGG - chr1_1:11538366-11538385 Msa0007990:CDS 30.0%
!! TTGTAAGATTTTGGGGAAAT+TGG - chr1_1:11538399-11538418 Msa0007990:CDS 30.0%
TTAAGTTATAAGGAGGTCTT+AGG - chr1_1:11538497-11538516 Msa0007990:CDS 30.0%
AAGCTATCTTGGAGAATTTA+TGG + chr1_1:11538618-11538637 None:intergenic 30.0%
TTAAGCAGTTTATTCAAACG+GGG - chr1_1:11538741-11538760 Msa0007990:intron 30.0%
TTTGGCAAAAATTTAGAGGT+TGG - chr1_1:11538884-11538903 Msa0007990:intron 30.0%
ACTACTTGAATCTAAGCATT+TGG + chr1_1:11539004-11539023 None:intergenic 30.0%
GATCAAAGATTGTTTCAGTT+AGG + chr1_1:11539077-11539096 None:intergenic 30.0%
!!! GACTATTTTCTTGTTTTCGT+TGG - chr1_1:11539307-11539326 Msa0007990:intron 30.0%
TAGATTCACACAAACAAAGT+GGG + chr1_1:11539358-11539377 None:intergenic 30.0%
ATAGATTCACACAAACAAAG+TGG + chr1_1:11539359-11539378 None:intergenic 30.0%
! TGGTTTTTATTAAAGGCTGT+TGG - chr1_1:11539490-11539509 Msa0007990:intron 30.0%
AATGTTATCTGCAGAACAAA+AGG + chr1_1:11539689-11539708 None:intergenic 30.0%
!!! TAGAGTTTCTTTTTTGGCAA+CGG + chr1_1:11539786-11539805 None:intergenic 30.0%
CTAAAAAACTTCATCACACA+AGG + chr1_1:11539855-11539874 None:intergenic 30.0%
CCTCTATTAAAGAATTCTTC+GGG + chr1_1:11539974-11539993 None:intergenic 30.0%
CTAATTGGGTTAAATCAATG+TGG + chr1_1:11540109-11540128 None:intergenic 30.0%
!! AGTGTTGCTTGGTTAATTTA+TGG - chr1_1:11540135-11540154 Msa0007990:intron 30.0%
TCATTTGGATTATATCTTGG+TGG - chr1_1:11540207-11540226 Msa0007990:intron 30.0%
!! TTAATGGGGTATTGGTAAAA+AGG - chr1_1:11540409-11540428 Msa0007990:CDS 30.0%
TAAGTTAGGGTAGAGATTAA+TGG + chr1_1:11540618-11540637 None:intergenic 30.0%
!! CAGTAGTTGGTAATAAGTTA+GGG + chr1_1:11540631-11540650 None:intergenic 30.0%
!! ACAGTAGTTGGTAATAAGTT+AGG + chr1_1:11540632-11540651 None:intergenic 30.0%
TGGTTGTAAATAACAGTAGT+TGG + chr1_1:11540644-11540663 None:intergenic 30.0%
CAGTTAGGTGATTAAATGAT+TGG + chr1_1:11540664-11540683 None:intergenic 30.0%
! ATGATGATAATTAACGGACA+AGG + chr1_1:11540754-11540773 None:intergenic 30.0%
TGTCCGTTAATTATCATCAT+TGG - chr1_1:11540754-11540773 Msa0007990:intron 30.0%
! ATTACTTCCTTGATTTTGAG+TGG - chr1_1:11540862-11540881 Msa0007990:intron 30.0%
TCAATTTCCTATTACAGTAG+AGG + chr1_1:11540892-11540911 None:intergenic 30.0%
TCTACTGTAATAGGAAATTG+AGG - chr1_1:11540891-11540910 Msa0007990:intron 30.0%
TTTCGCTAAGCAAAAGAAAA+AGG - chr1_1:11541005-11541024 Msa0007990:intron 30.0%
TTGAGATGATTATGTCAAAC+TGG - chr1_1:11541042-11541061 Msa0007990:intron 30.0%
TGAGATGATTATGTCAAACT+GGG - chr1_1:11541043-11541062 Msa0007990:intron 30.0%
AGCTGACAAATGAATTTCTA+TGG - chr1_1:11541075-11541094 Msa0007990:intron 30.0%
AGAAGTTTGAACAGATAGTT+AGG + chr1_1:11541182-11541201 None:intergenic 30.0%
! ACTTCTGTAATTTTATCCTG+CGG - chr1_1:11541196-11541215 Msa0007990:intron 30.0%
!!! GCTATCAATTTGTTTTGTTC+AGG - chr1_1:11541430-11541449 Msa0007990:intron 30.0%
!!! AATTTGTTTTGTTCAGGCAT+CGG - chr1_1:11541436-11541455 Msa0007990:intron 30.0%
TCATCTATCTAATCAGTGAT+GGG - chr1_1:11541627-11541646 Msa0007990:CDS 30.0%
! ACACAGTTAAAATTTGGGTT+TGG - chr1_1:11541812-11541831 Msa0007990:intron 30.0%
ATCATGTCATATCTATGGAT+GGG + chr1_1:11541856-11541875 None:intergenic 30.0%
AATCATGTCATATCTATGGA+TGG + chr1_1:11541857-11541876 None:intergenic 30.0%
GATTCGTCACAGTTAAAATT+TGG - chr1_1:11541873-11541892 Msa0007990:CDS 30.0%
AATGATTGAACCATGGTATT+AGG - chr1_1:11542013-11542032 Msa0007990:five_prime_UTR 30.0%
ATTCATGTTCAGAGAAATAG+AGG - chr1_1:11542059-11542078 Msa0007990:five_prime_UTR 30.0%
AGAGAAATAGAGGACATAAT+GGG - chr1_1:11542069-11542088 Msa0007990:five_prime_UTR 30.0%
! GTAAAACCATTCAGTTTGTT+AGG - chr1_1:11542193-11542212 Msa0007990:five_prime_UTR 30.0%
! TTGTTAGGGATAGAAAGTAT+TGG - chr1_1:11542208-11542227 Msa0007990:five_prime_UTR 30.0%
!! AGAAAGTATTGGTTCTCTAA+AGG - chr1_1:11542219-11542238 Msa0007990:five_prime_UTR 30.0%
GTATTATTTCGGGAAATCAA+AGG + chr1_1:11542283-11542302 None:intergenic 30.0%
GTATGTGTAAAAGTTTGGCT+AGG + chr1_1:11537895-11537914 None:intergenic 35.0%
TTGTGAAACACGTTCTTGTT+TGG + chr1_1:11537942-11537961 None:intergenic 35.0%
GTGAGTAATACTCTCTTTGT+TGG + chr1_1:11538096-11538115 None:intergenic 35.0%
! AGAGTATTACTCACCTCAAA+TGG - chr1_1:11538102-11538121 Msa0007990:three_prime_UTR 35.0%
!! ATTTTTGTGTCTTTCTAGGG+TGG - chr1_1:11538237-11538256 Msa0007990:three_prime_UTR 35.0%
!! TTCAGTTACTGATTCTGTTG+TGG - chr1_1:11538312-11538331 Msa0007990:CDS 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG + chr1_1:11538629-11538648 None:intergenic 35.0%
TCACTTTCACCAACAAACTT+AGG + chr1_1:11538767-11538786 None:intergenic 35.0%
! TTGTTGGTGAAAGTGATTCT+TGG - chr1_1:11538771-11538790 Msa0007990:intron 35.0%
GGTTCAGCATATACTATACA+AGG + chr1_1:11539142-11539161 None:intergenic 35.0%
ATAATGCCTAACATGTTGAC+AGG + chr1_1:11539176-11539195 None:intergenic 35.0%
TCAACATGTTAGGCATTATG+AGG - chr1_1:11539177-11539196 Msa0007990:intron 35.0%
TAACTAATGTATGCACCTTC+AGG - chr1_1:11539206-11539225 Msa0007990:intron 35.0%
ATTCATCAAAACAGTCCTGA+AGG + chr1_1:11539224-11539243 None:intergenic 35.0%
TTCTTTGATCTGCTTGAGAA+TGG - chr1_1:11539331-11539350 Msa0007990:intron 35.0%
AATCTATGAGCTGAACGAAT+TGG - chr1_1:11539372-11539391 Msa0007990:intron 35.0%
ATCTATGAGCTGAACGAATT+GGG - chr1_1:11539373-11539392 Msa0007990:intron 35.0%
! GGATTCTATTCATCTGAAAC+AGG - chr1_1:11539394-11539413 Msa0007990:intron 35.0%
CTGTTAACTCAAGATGATCT+TGG + chr1_1:11539426-11539445 None:intergenic 35.0%
! AGATAAATTTTATGGCGGCA+TGG - chr1_1:11539470-11539489 Msa0007990:intron 35.0%
!!! AGAGTTTCTTTTTTGGCAAC+GGG + chr1_1:11539785-11539804 None:intergenic 35.0%
CCCGAAGAATTCTTTAATAG+AGG - chr1_1:11539971-11539990 Msa0007990:intron 35.0%
! TTATGTCCCACCATTTTATG+TGG - chr1_1:11540060-11540079 Msa0007990:intron 35.0%
! TATGTCCCACCATTTTATGT+GGG - chr1_1:11540061-11540080 Msa0007990:intron 35.0%
GAAATGGAACCCACATAAAA+TGG + chr1_1:11540073-11540092 None:intergenic 35.0%
CTTGGTTAATTTATGGCTCA+TGG - chr1_1:11540142-11540161 Msa0007990:intron 35.0%
AGTTACTGCATTGTTTGTGT+TGG - chr1_1:11540175-11540194 Msa0007990:intron 35.0%
GTTACTGCATTGTTTGTGTT+GGG - chr1_1:11540176-11540195 Msa0007990:intron 35.0%
TGTTGGGTATACTTGTCATT+TGG - chr1_1:11540192-11540211 Msa0007990:intron 35.0%
AATTATGAGAAGGATGACGA+TGG - chr1_1:11540365-11540384 Msa0007990:intron 35.0%
ATTATGAGAAGGATGACGAT+GGG - chr1_1:11540366-11540385 Msa0007990:intron 35.0%
CTAGCTAATTCTCTTCTCAA+GGG - chr1_1:11540512-11540531 Msa0007990:CDS 35.0%
AACGAATAGAGTTGTCAGTT+AGG + chr1_1:11540679-11540698 None:intergenic 35.0%
AGGATTACCACTCAAAATCA+AGG + chr1_1:11540872-11540891 None:intergenic 35.0%
TGGTAATCCTCTACTGTAAT+AGG - chr1_1:11540882-11540901 Msa0007990:intron 35.0%
CAAATGAATTTCTATGGCTG+TGG - chr1_1:11541081-11541100 Msa0007990:intron 35.0%
!! TCAAGTACTAGTATTGGCTT+CGG + chr1_1:11541155-11541174 None:intergenic 35.0%
GGAACTTCAAGTACTAGTAT+TGG + chr1_1:11541161-11541180 None:intergenic 35.0%
CAATAGCATTAACTCTGATC+TGG + chr1_1:11541481-11541500 None:intergenic 35.0%
AGAGTTAATGCTATTGCAAG+AGG - chr1_1:11541485-11541504 Msa0007990:intron 35.0%
! ATAATGGGAATTCATCTTCC+AGG + chr1_1:11541517-11541536 None:intergenic 35.0%
GGAAGATGAATTCCCATTAT+CGG - chr1_1:11541517-11541536 Msa0007990:intron 35.0%
GTCATCTATCTAATCAGTGA+TGG - chr1_1:11541626-11541645 Msa0007990:CDS 35.0%
GGAACAACCATATATGTTGA+TGG - chr1_1:11541665-11541684 Msa0007990:CDS 35.0%
GTGGAAGAACAATCACATAA+AGG + chr1_1:11541723-11541742 None:intergenic 35.0%
GACGAATCATGTCATATCTA+TGG + chr1_1:11541861-11541880 None:intergenic 35.0%
! TGTGTACATCTAAAGCCTAA+AGG + chr1_1:11541923-11541942 None:intergenic 35.0%
ATCCTCTAATGATTGAACCA+TGG - chr1_1:11542006-11542025 Msa0007990:five_prime_UTR 35.0%
TACCATGGTTCAATCATTAG+AGG + chr1_1:11542011-11542030 None:intergenic 35.0%
CAGAGAAATAGAGGACATAA+TGG - chr1_1:11542068-11542087 Msa0007990:five_prime_UTR 35.0%
TTCGTGTATTTGAGAGTCAT+AGG - chr1_1:11542096-11542115 Msa0007990:five_prime_UTR 35.0%
! TTGGTTATAAGAATGATGGG+TGG - chr1_1:11542152-11542171 Msa0007990:five_prime_UTR 35.0%
!! TTATAAGAATGATGGGTGGA+AGG - chr1_1:11542156-11542175 Msa0007990:five_prime_UTR 35.0%
TCTATCCCTAACAAACTGAA+TGG + chr1_1:11542202-11542221 None:intergenic 35.0%
!! AAGGGAGGCTAGTTGATTTT+AGG + chr1_1:11537817-11537836 None:intergenic 40.0%
GTAAAAGTTTGGCTAGGACA+TGG + chr1_1:11537889-11537908 None:intergenic 40.0%
GAATTCGTTTCAATGCTCAC+TGG + chr1_1:11538057-11538076 None:intergenic 40.0%
GCTTTCCATTTAGCCAAACA+AGG - chr1_1:11538147-11538166 Msa0007990:three_prime_UTR 40.0%
! TGCATCCTTGTTTGGCTAAA+TGG + chr1_1:11538155-11538174 None:intergenic 40.0%
ATTTAGCCAAACAAGGATGC+AGG - chr1_1:11538154-11538173 Msa0007990:three_prime_UTR 40.0%
!!! TCTTTCTAGGGTGGTTTTGA+TGG - chr1_1:11538246-11538265 Msa0007990:three_prime_UTR 40.0%
!!! CTTTCTAGGGTGGTTTTGAT+GGG - chr1_1:11538247-11538266 Msa0007990:three_prime_UTR 40.0%
!! TACTGATTCTGTTGTGGAAG+TGG - chr1_1:11538318-11538337 Msa0007990:CDS 40.0%
TGTTGTGGAAGTGGTTGAAT+TGG - chr1_1:11538327-11538346 Msa0007990:CDS 40.0%
GGAAGTGGTTGAATTGGATA+TGG - chr1_1:11538333-11538352 Msa0007990:CDS 40.0%
! GTCTTAGGTTCGAATTTTCC+CGG - chr1_1:11538512-11538531 Msa0007990:CDS 40.0%
AACACATGAGTTGTTAGCAC+CGG + chr1_1:11538534-11538553 None:intergenic 40.0%
CAATGAAGATCGAATCGATC+CGG - chr1_1:11539034-11539053 Msa0007990:intron 40.0%
! GGCGGCATGGTTTTTATTAA+AGG - chr1_1:11539483-11539502 Msa0007990:intron 40.0%
TATTAAAGGCTGTTGGCCAA+AGG - chr1_1:11539497-11539516 Msa0007990:intron 40.0%
!! TCGATAATGGGTTCAGAAAG+AGG - chr1_1:11539562-11539581 Msa0007990:intron 40.0%
!! CGATAATGGGTTCAGAAAGA+GGG - chr1_1:11539563-11539582 Msa0007990:intron 40.0%
!!! GAGTTTCTTTTTTGGCAACG+GGG + chr1_1:11539784-11539803 None:intergenic 40.0%
TCAAACACTCGCTCTCTTAT+TGG - chr1_1:11540026-11540045 Msa0007990:intron 40.0%
CAAACACTCGCTCTCTTATT+GGG - chr1_1:11540027-11540046 Msa0007990:intron 40.0%
TGGAACCCACATAAAATGGT+GGG + chr1_1:11540069-11540088 None:intergenic 40.0%
ATGGAACCCACATAAAATGG+TGG + chr1_1:11540070-11540089 None:intergenic 40.0%
GGGTTCCATTTCCAAAATGT+AGG - chr1_1:11540081-11540100 Msa0007990:intron 40.0%
!! TGGGTCCTACATTTTGGAAA+TGG + chr1_1:11540089-11540108 None:intergenic 40.0%
! TCAATGTGGGTCCTACATTT+TGG + chr1_1:11540095-11540114 None:intergenic 40.0%
GCAACACTCACTCTCTAATT+GGG + chr1_1:11540123-11540142 None:intergenic 40.0%
AGCAACACTCACTCTCTAAT+TGG + chr1_1:11540124-11540143 None:intergenic 40.0%
! ATTAGAGAGTGAGTGTTGCT+TGG - chr1_1:11540124-11540143 Msa0007990:intron 40.0%
!! TTTTAGGAGTTGTCTCTGCA+TGG - chr1_1:11540274-11540293 Msa0007990:intron 40.0%
ATATAGTGTCCGGGGTTAAT+GGG - chr1_1:11540394-11540413 Msa0007990:intron 40.0%
GCTAGCTAATTCTCTTCTCA+AGG - chr1_1:11540511-11540530 Msa0007990:CDS 40.0%
AGTAACTGAGATGGTTGCAA+GGG + chr1_1:11540544-11540563 None:intergenic 40.0%
TAGTAACTGAGATGGTTGCA+AGG + chr1_1:11540545-11540564 None:intergenic 40.0%
GGAGAGTTCACAATAGAGAT+AGG + chr1_1:11540581-11540600 None:intergenic 40.0%
AATAAACAGTGCACTCTAGG+AGG + chr1_1:11540712-11540731 None:intergenic 40.0%
GAGAATAAACAGTGCACTCT+AGG + chr1_1:11540715-11540734 None:intergenic 40.0%
! GATAATTAACGGACAAGGTG+CGG + chr1_1:11540749-11540768 None:intergenic 40.0%
GAGTTGCATCGTTGTAACAA+AGG - chr1_1:11540776-11540795 Msa0007990:intron 40.0%
TCAAGGAAGTAATAAGGTGC+AGG + chr1_1:11540855-11540874 None:intergenic 40.0%
!! ACTAGTATTGGCTTCGGAAT+AGG + chr1_1:11541149-11541168 None:intergenic 40.0%
! CTGTAATTTTATCCTGCGGT+TGG - chr1_1:11541200-11541219 Msa0007990:intron 40.0%
! ATATTGACTAATCCAACCGC+AGG + chr1_1:11541215-11541234 None:intergenic 40.0%
CTATAACAGAGAAACTGCAC+AGG + chr1_1:11541256-11541275 None:intergenic 40.0%
AGATGAATTCCCATTATCGG+TGG - chr1_1:11541520-11541539 Msa0007990:intron 40.0%
GATGAATTCCCATTATCGGT+GGG - chr1_1:11541521-11541540 Msa0007990:intron 40.0%
CTGTGCTCCATCAACATATA+TGG + chr1_1:11541675-11541694 None:intergenic 40.0%
! ACATCTAAAGCCTAAAGGCA+CGG + chr1_1:11541918-11541937 None:intergenic 40.0%
GCACGAGAAAGTGACTCAAA+GGG + chr1_1:11537835-11537854 None:intergenic 45.0%
AGAAACATCGTCGCCATTTG+AGG + chr1_1:11538118-11538137 None:intergenic 45.0%
AATGGCGACGATGTTTCTCA+TGG - chr1_1:11538120-11538139 Msa0007990:three_prime_UTR 45.0%
TTCACACCTGCATCCTTGTT+TGG + chr1_1:11538163-11538182 None:intergenic 45.0%
ACACATGAGTTGTTAGCACC+GGG + chr1_1:11538533-11538552 None:intergenic 45.0%
TGTTGACAGGACTTGGCATT+TGG + chr1_1:11539163-11539182 None:intergenic 45.0%
CCTAACATGTTGACAGGACT+TGG + chr1_1:11539170-11539189 None:intergenic 45.0%
CCAAGTCCTGTCAACATGTT+AGG - chr1_1:11539167-11539186 Msa0007990:intron 45.0%
TGTTGAAGTTCCGCATCCTT+TGG + chr1_1:11539516-11539535 None:intergenic 45.0%
AAGGATGCGGAACTTCAACA+AGG - chr1_1:11539516-11539535 Msa0007990:intron 45.0%
AGGATGCGGAACTTCAACAA+GGG - chr1_1:11539517-11539536 Msa0007990:intron 45.0%
! TCAGAAAGAGGGCTTTATCC+AGG - chr1_1:11539574-11539593 Msa0007990:intron 45.0%
CTGGAGTTCAGCAGTTAGTT+CGG - chr1_1:11539623-11539642 Msa0007990:intron 45.0%
TGGAGTTCAGCAGTTAGTTC+GGG - chr1_1:11539624-11539643 Msa0007990:intron 45.0%
TAAGAGAGCGAGTGTTTGAG+AGG + chr1_1:11540025-11540044 None:intergenic 45.0%
!! ATGGGCACTGATATAGTGTC+CGG - chr1_1:11540384-11540403 Msa0007990:intron 45.0%
GATATAGTGTCCGGGGTTAA+TGG - chr1_1:11540393-11540412 Msa0007990:intron 45.0%
TATAGTGTCCGGGGTTAATG+GGG - chr1_1:11540395-11540414 Msa0007990:intron 45.0%
TACCAATACCCCATTAACCC+CGG + chr1_1:11540406-11540425 None:intergenic 45.0%
!!! TTTTGTTCAGGCATCGGCTA+TGG - chr1_1:11541442-11541461 Msa0007990:intron 45.0%
GGAATTCATCTTCCAGGTGA+AGG + chr1_1:11541511-11541530 None:intergenic 45.0%
AATTCCCATTATCGGTGGGA+AGG - chr1_1:11541525-11541544 Msa0007990:intron 45.0%
ATTCCCATTATCGGTGGGAA+GGG - chr1_1:11541526-11541545 Msa0007990:intron 45.0%
TTTCCCTTCCCACCGATAAT+GGG + chr1_1:11541532-11541551 None:intergenic 45.0%
ATTATCGGTGGGAAGGGAAA+GGG - chr1_1:11541532-11541551 Msa0007990:intron 45.0%
ACATCAAGCCATCTCTCAAG+TGG + chr1_1:11541584-11541603 None:intergenic 45.0%
ATGGAGCACAGTCTATAACC+AGG - chr1_1:11541684-11541703 Msa0007990:CDS 45.0%
CACATAAAGGAACGCATCCT+AGG + chr1_1:11541710-11541729 None:intergenic 45.0%
! CTTTGAAAAGTTCCTCGCTG+TGG + chr1_1:11541742-11541761 None:intergenic 45.0%
! CACAGCGAGGAACTTTTCAA+AGG - chr1_1:11541740-11541759 Msa0007990:CDS 45.0%
! CATCTAAAGCCTAAAGGCAC+GGG + chr1_1:11541917-11541936 None:intergenic 45.0%
TTCTACACACCTCTCTTCCA+GGG + chr1_1:11542040-11542059 None:intergenic 45.0%
ATTCTACACACCTCTCTTCC+AGG + chr1_1:11542041-11542060 None:intergenic 45.0%
TGAGAGTCATAGGAGAGAAG+TGG - chr1_1:11542106-11542125 Msa0007990:five_prime_UTR 45.0%
CGAGAAAGTGACTCAAAGGG+AGG + chr1_1:11537832-11537851 None:intergenic 50.0%
CGCACGAGAAAGTGACTCAA+AGG + chr1_1:11537836-11537855 None:intergenic 50.0%
!!! TAGGGTGGTTTTGATGGGAG+AGG - chr1_1:11538252-11538271 Msa0007990:three_prime_UTR 50.0%
! TGTGTTGCTCCGACACCAAT+TGG - chr1_1:11538548-11538567 Msa0007990:CDS 50.0%
AATTGGACCCGGCTAATGGA+CGG - chr1_1:11538565-11538584 Msa0007990:CDS 50.0%
AATTCCACCGTCCATTAGCC+GGG + chr1_1:11538575-11538594 None:intergenic 50.0%
CAATTCCACCGTCCATTAGC+CGG + chr1_1:11538576-11538595 None:intergenic 50.0%
CAAACGGGGCCTAAGTTTGT+TGG - chr1_1:11538755-11538774 Msa0007990:intron 50.0%
! TCGATCCGGAGTATCTGAGT+TGG - chr1_1:11539048-11539067 Msa0007990:intron 50.0%
GGGTTCCAACTCAGATACTC+CGG + chr1_1:11539056-11539075 None:intergenic 50.0%
ATGCGGAACTTCAACAAGGG+TGG - chr1_1:11539520-11539539 Msa0007990:intron 50.0%
TGCGGAACTTCAACAAGGGT+GGG - chr1_1:11539521-11539540 Msa0007990:intron 50.0%
TAACTGCTGAACTCCAGCCA+AGG + chr1_1:11539620-11539639 None:intergenic 50.0%
!! TGGGCACTGATATAGTGTCC+GGG - chr1_1:11540385-11540404 Msa0007990:intron 50.0%
! AAACAGTGCACTCTAGGAGG+AGG + chr1_1:11540709-11540728 None:intergenic 50.0%
AGTGACTCTATCCTCCGAAG+TGG - chr1_1:11540825-11540844 Msa0007990:intron 50.0%
AAGGTGCAGGAAAGCCACTT+CGG + chr1_1:11540842-11540861 None:intergenic 50.0%
!! CTATGGCTGTGGTATCGATG+TGG - chr1_1:11541092-11541111 Msa0007990:intron 50.0%
CAGAGAAACTGCACAGGACA+TGG + chr1_1:11541250-11541269 None:intergenic 50.0%
TATTGCAAGAGGCCTTCACC+TGG - chr1_1:11541496-11541515 Msa0007990:intron 50.0%
CTTTCCCTTCCCACCGATAA+TGG + chr1_1:11541533-11541552 None:intergenic 50.0%
CATTATCGGTGGGAAGGGAA+AGG - chr1_1:11541531-11541550 Msa0007990:intron 50.0%
AAGGGAAAGGGCAGAGAAGT+TGG - chr1_1:11541544-11541563 Msa0007990:intron 50.0%
!! GGCAGAGAAGTTGGTGAAAG+AGG - chr1_1:11541553-11541572 Msa0007990:intron 50.0%
GATGGGTCATGCTACATGAC+AGG - chr1_1:11541644-11541663 Msa0007990:CDS 50.0%
CACAGTCTATAACCAGGCCT+AGG - chr1_1:11541690-11541709 Msa0007990:CDS 50.0%
GTGATTGTTCTTCCACAGCG+AGG - chr1_1:11541727-11541746 Msa0007990:CDS 50.0%
! CTAAAGGCACGGGCAAACAA+TGG + chr1_1:11541907-11541926 None:intergenic 50.0%
CATTGTTTGCCCGTGCCTTT+AGG - chr1_1:11541905-11541924 Msa0007990:CDS 50.0%
GAACCATGGTATTAGGACCC+TGG - chr1_1:11542020-11542039 Msa0007990:five_prime_UTR 50.0%
CTTCCAGGGTCCTAATACCA+TGG + chr1_1:11542026-11542045 None:intergenic 50.0%
GTATTAGGACCCTGGAAGAG+AGG - chr1_1:11542028-11542047 Msa0007990:five_prime_UTR 50.0%
TAGCCGGGTCCAATTGGTGT+CGG + chr1_1:11538560-11538579 None:intergenic 55.0%
CACCAATTGGACCCGGCTAA+TGG - chr1_1:11538561-11538580 Msa0007990:CDS 55.0%
GTCCATTAGCCGGGTCCAAT+TGG + chr1_1:11538566-11538585 None:intergenic 55.0%
AGGCTGTTGGCCAAAGGATG+CGG - chr1_1:11539503-11539522 Msa0007990:intron 55.0%
TGCTGCATATGCCTCAGCCT+TGG - chr1_1:11539600-11539619 Msa0007990:intron 55.0%
!! GGGCACTGATATAGTGTCCG+GGG - chr1_1:11540386-11540405 Msa0007990:intron 55.0%
GTCCGGGGTTAATGGGGTAT+TGG - chr1_1:11540401-11540420 Msa0007990:CDS 55.0%
! AGTGCACTCTAGGAGGAGGA+GGG + chr1_1:11540705-11540724 None:intergenic 55.0%
!! CAGGCATCGGCTATGGAGAT+AGG - chr1_1:11541449-11541468 Msa0007990:intron 55.0%
AGGCAGCACCACTTGAGAGA+TGG - chr1_1:11541573-11541592 Msa0007990:intron 55.0%
AAAGGAACGCATCCTAGGCC+TGG + chr1_1:11541705-11541724 None:intergenic 55.0%
GCTCCGACACCAATTGGACC+CGG - chr1_1:11538554-11538573 Msa0007990:CDS 60.0%
GAGGCATATGCAGCAGCTCC+TGG + chr1_1:11539595-11539614 None:intergenic 60.0%
GCATATGCCTCAGCCTTGGC+TGG - chr1_1:11539604-11539623 Msa0007990:intron 60.0%
CTGAACTCCAGCCAAGGCTG+AGG + chr1_1:11539614-11539633 None:intergenic 60.0%
! GTGCACTCTAGGAGGAGGAG+GGG + chr1_1:11540704-11540723 None:intergenic 60.0%
! CAGTGCACTCTAGGAGGAGG+AGG + chr1_1:11540706-11540725 None:intergenic 60.0%
GTGCAGGAAAGCCACTTCGG+AGG + chr1_1:11540839-11540858 None:intergenic 60.0%
! TGGACCCGGCTAATGGACGG+TGG - chr1_1:11538568-11538587 Msa0007990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 11537720 11542322 11537720 ID=Msa0007990;Name=Msa0007990
chr1_1 mRNA 11537720 11542322 11537720 ID=Msa0007990-mRNA-1;Parent=Msa0007990;Name=Msa0007990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=364|1|1|1|1|1|4|592|265
chr1_1 exon 11537720 11538590 11537720 ID=Msa0007990-mRNA-1:exon:4269;Parent=Msa0007990-mRNA-1
chr1_1 exon 11540397 11540626 11540397 ID=Msa0007990-mRNA-1:exon:4268;Parent=Msa0007990-mRNA-1
chr1_1 exon 11541591 11541787 11541591 ID=Msa0007990-mRNA-1:exon:4267;Parent=Msa0007990-mRNA-1
chr1_1 exon 11541867 11542322 11541867 ID=Msa0007990-mRNA-1:exon:4266;Parent=Msa0007990-mRNA-1
chr1_1 five_prime_UTR 11541959 11542322 11541959 ID=Msa0007990-mRNA-1:five_prime_utr;Parent=Msa0007990-mRNA-1
chr1_1 CDS 11541867 11541958 11541867 ID=Msa0007990-mRNA-1:cds;Parent=Msa0007990-mRNA-1
chr1_1 CDS 11541591 11541787 11541591 ID=Msa0007990-mRNA-1:cds;Parent=Msa0007990-mRNA-1
chr1_1 CDS 11540397 11540626 11540397 ID=Msa0007990-mRNA-1:cds;Parent=Msa0007990-mRNA-1
chr1_1 CDS 11538312 11538590 11538312 ID=Msa0007990-mRNA-1:cds;Parent=Msa0007990-mRNA-1
chr1_1 three_prime_UTR 11537720 11538311 11537720 ID=Msa0007990-mRNA-1:three_prime_utr;Parent=Msa0007990-mRNA-1
Gene Sequence

>Msa0007990

ATGACGAATCCAACAAAGAGAGTATTACTCACCTCAAATGGCGACGATGTTTCTCATGGCATTGCTTTCCATTTAGCCAAACAAGGATGCAGGGTGGTTTTGATGGGAGAGGCAAGTAGCTTACGAAGTATTGCACGAAAAATAACGGATTCAGTTACTGATTCTGTTGTGGAAGTGGTTGAATTGGATATGGAGAATGAGAATGAATCTGTTTTTCATGATGCGGTTGATAAAGCTTGTAAGATTTTGGGGAAATTGGATGCTTTTGTTAATTGTTATTCTTATGAAGGAAAGATCCAAGATCATCTTGAGTTAACAGAGAGTGAGTACAAAAAAATAGTGAAGATAAATTTTATGGCGGCATGGTTTTTATTAAAGGCTGTTGGCCAAAGGATGCGGAACTTCAACAAGGGTGGGTCCATTGTATTTATAACGTCGATAATGGGTTCAGAAAGAGGGCTTTATCCAGGAGCTGCTGCATATGCCTCAGCCTTGGCTGGAGTTCAGCAGTTAGTTCGGGCATCGGCTATGGAGATAGGTAAGTACCAGATCAGAGTTAATGCTATTGCAAGAGGCCTTCACCTGGAAGATGAATTCCCATTATCGGTGGGAAGGGAAAGGGCAGAGAAGTTGGTGAAAGAGGCAGCACCACTTGAGAGATGGCTTGATGTTAAGAATGATCTAGCTTCTACAGTCATCTATCTAATCAGTGATGGGTCATGCTACATGACAGGAACAACCATATATGTTGATGGAGCACAGTCTATAACCAGGCCTAGGATGCGTTCCTTTATGTGA

Protein sequence

>Msa0007990

MTNPTKRVLLTSNGDDVSHGIAFHLAKQGCRVVLMGEASSLRSIARKITDSVTDSVVEVVELDMENENESVFHDAVDKACKILGKLDAFVNCYSYEGKIQDHLELTESEYKKIVKINFMAAWFLLKAVGQRMRNFNKGGSIVFITSIMGSERGLYPGAAAYASALAGVQQLVRASAMEIGKYQIRVNAIARGLHLEDEFPLSVGRERAEKLVKEAAPLERWLDVKNDLASTVIYLISDGSCYMTGTTIYVDGAQSITRPRMRSFM*