AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123800 MtrunA17_Chr1g0184691 99.444 360 2 0 1 360 1 360 0.0 746
Msa0123800 MtrunA17_Chr1g0147881 36.313 358 162 10 4 350 17 319 3.78e-57 189
Msa0123800 MtrunA17_Chr4g0053281 56.044 182 58 4 183 351 152 324 1.86e-55 184
Msa0123800 MtrunA17_Chr5g0401821 74.074 108 26 2 245 351 151 257 3.25e-53 177
Msa0123800 MtrunA17_Chr4g0071521 63.768 138 39 4 218 352 175 304 8.54e-52 174
Msa0123800 MtrunA17_Chr3g0139021 48.466 163 72 5 205 359 222 380 2.65e-40 146
Msa0123800 MtrunA17_Chr7g0228941 59.494 79 32 0 272 350 31 109 1.81e-31 115
Msa0123800 MtrunA17_Chr2g0284321 55.682 88 38 1 268 354 9 96 1.58e-27 107
Msa0123800 MtrunA17_Chr2g0293481 52.475 101 42 3 261 356 230 329 5.00e-26 108
Msa0123800 MtrunA17_Chr8g0379461 52.222 90 36 1 269 351 45 134 6.67e-26 104
Msa0123800 MtrunA17_Chr2g0319961 53.191 94 28 2 269 351 50 138 1.41e-25 103
Msa0123800 MtrunA17_Chr2g0289181 61.972 71 26 1 290 360 11 80 2.19e-25 102
Msa0123800 MtrunA17_Chr7g0248691 57.831 83 30 1 268 350 134 211 3.88e-25 103
Msa0123800 MtrunA17_Chr8g0348311 57.831 83 30 2 268 350 135 212 3.08e-23 99.0
Msa0123800 MtrunA17_Chr7g0270051 50.562 89 40 1 266 350 22 110 4.37e-23 97.1
Msa0123800 MtrunA17_Chr1g0202461 66.102 59 20 0 294 352 262 320 7.65e-22 95.5
Msa0123800 MtrunA17_Chr8g0387501 54.286 70 28 1 281 350 121 186 2.55e-19 86.7
Msa0123800 MtrunA17_Chr3g0099641 51.389 72 35 0 289 360 247 318 2.86e-19 89.0
Msa0123800 MtrunA17_Chr3g0101131 58.209 67 26 2 289 355 411 475 5.39e-19 88.2
Msa0123800 MtrunA17_Chr5g0445311 59.016 61 24 1 290 350 361 420 6.20e-19 88.2
Msa0123800 MtrunA17_Chr4g0042831 46.591 88 45 2 273 360 258 343 6.69e-19 87.0
Msa0123800 MtrunA17_Chr7g0270831 44.565 92 43 1 269 360 200 283 1.00e-18 87.0
Msa0123800 MtrunA17_Chr7g0270191 44.578 83 45 1 268 350 120 201 1.04e-18 85.5
Msa0123800 MtrunA17_Chr5g0418191 34.641 153 94 3 208 360 239 385 1.14e-18 86.7
Msa0123800 MtrunA17_Chr5g0418191 53.968 63 26 3 289 350 146 206 1.23e-12 68.6
Msa0123800 MtrunA17_Chr1g0150281 47.945 73 36 1 279 351 128 198 1.50e-18 84.7
Msa0123800 MtrunA17_Chr4g0051181 57.895 57 24 0 294 350 244 300 1.74e-18 86.7
Msa0123800 MtrunA17_Chr7g0249301 45.361 97 43 4 267 355 258 352 1.89e-18 85.9
Msa0123800 MtrunA17_Chr7g0249301 54.237 59 25 2 294 352 63 119 4.96e-12 66.6
Msa0123800 MtrunA17_Chr7g0218081 63.158 57 20 1 294 350 411 466 2.21e-18 86.3
Msa0123800 MtrunA17_Chr7g0218081 53.125 64 27 3 290 352 224 285 2.86e-13 70.9
Msa0123800 MtrunA17_Chr2g0288871 47.436 78 41 0 277 354 289 366 2.77e-18 86.3
Msa0123800 MtrunA17_Chr7g0238921 49.367 79 36 2 276 354 110 184 2.82e-18 84.3
Msa0123800 MtrunA17_Chr3g0136961 55.172 58 26 0 294 351 139 196 3.33e-18 84.0
Msa0123800 MtrunA17_Chr4g0001361 43.478 92 48 2 267 354 132 223 4.75e-18 84.0
Msa0123800 MtrunA17_Chr4g0004911 49.351 77 35 2 277 350 317 392 5.63e-18 85.1
Msa0123800 MtrunA17_Chr4g0004911 50.847 59 28 1 294 352 185 242 2.78e-13 70.9
Msa0123800 MtrunA17_Chr7g0263531 57.895 57 23 1 294 350 362 417 6.29e-18 84.7
Msa0123800 MtrunA17_Chr7g0263531 52.055 73 30 4 281 352 178 246 6.59e-15 75.5
Msa0123800 MtrunA17_Chr2g0322391 47.436 78 41 0 277 354 333 410 6.43e-18 85.1
Msa0123800 MtrunA17_Chr4g0074001 57.895 57 23 1 294 350 360 415 1.34e-17 84.0
Msa0123800 MtrunA17_Chr4g0025061 57.895 57 24 0 294 350 361 417 1.80e-17 84.0
Msa0123800 MtrunA17_Chr7g0243891 33.143 175 95 6 196 360 277 439 2.62e-17 83.2
Msa0123800 MtrunA17_Chr7g0243891 52.542 59 26 2 294 352 217 273 5.58e-12 67.0
Msa0123800 MtrunA17_Chr5g0432161 36.508 126 72 2 232 350 353 477 3.03e-17 83.2
Msa0123800 MtrunA17_Chr5g0432161 52.542 59 26 2 294 352 245 301 1.26e-12 68.9
Msa0123800 MtrunA17_Chr3g0106491 48.718 78 39 1 273 350 345 421 3.24e-17 82.8
Msa0123800 MtrunA17_Chr3g0106491 54.237 59 25 2 294 352 199 255 3.12e-13 70.9
Msa0123800 MtrunA17_Chr4g0051881 54.839 62 26 2 294 355 179 238 3.68e-17 81.6
Msa0123800 MtrunA17_Chr7g0216891 56.140 57 25 0 294 350 220 276 4.42e-17 82.4
Msa0123800 MtrunA17_Chr5g0443131 52.239 67 31 1 294 360 158 223 5.81e-17 80.5
Msa0123800 MtrunA17_Chr3g0079691 37.500 112 57 3 251 350 441 551 5.97e-17 82.4
Msa0123800 MtrunA17_Chr3g0079691 52.459 61 27 2 294 354 281 339 2.06e-12 68.6
Msa0123800 MtrunA17_Chr4g0075201 52.308 65 28 1 294 358 268 329 7.92e-17 81.6
Msa0123800 MtrunA17_Chr2g0333851 51.667 60 29 0 291 350 167 226 8.03e-17 80.1
Msa0123800 MtrunA17_Chr1g0150801 38.384 99 58 2 252 350 63 158 1.05e-16 76.6
Msa0123800 MtrunA17_Chr4g0060271 53.448 58 27 0 294 351 256 313 1.12e-16 81.3
Msa0123800 MtrunA17_Chr7g0249311 48.780 82 37 3 277 355 373 452 1.12e-16 81.6
Msa0123800 MtrunA17_Chr7g0249311 52.542 59 26 2 294 352 180 236 3.24e-11 64.7
Msa0123800 MtrunA17_Chr2g0302391 52.459 61 29 0 294 354 212 272 1.26e-16 80.9
Msa0123800 MtrunA17_Chr1g0150271 46.970 66 34 1 291 356 99 163 5.66e-16 77.0
Msa0123800 MtrunA17_Chr1g0188941 43.182 88 45 3 268 355 29 111 5.87e-16 73.2
Msa0123800 MtrunA17_Chr8g0335811 39.583 96 52 3 268 360 126 218 7.10e-16 75.9
Msa0123800 MtrunA17_Chr5g0447701 56.897 58 24 1 294 351 253 309 7.24e-16 78.2
Msa0123800 MtrunA17_Chr8g0383251 52.459 61 28 1 290 350 105 164 1.84e-15 73.9
Msa0123800 MtrunA17_Chr5g0418781 41.860 86 49 1 268 353 99 183 2.10e-15 75.5
Msa0123800 MtrunA17_Chr8g0383351 47.619 63 32 1 289 351 156 217 2.96e-15 74.3
Msa0123800 MtrunA17_Chr1g0194481 39.759 83 49 1 268 350 133 214 2.99e-15 75.9
Msa0123800 MtrunA17_Chr3g0126391 54.386 57 24 1 294 348 134 190 5.57e-15 75.1
Msa0123800 MtrunA17_Chr3g0129361 47.619 63 32 1 289 351 140 201 6.71e-15 73.2
Msa0123800 MtrunA17_Chr4g0025051 56.604 53 23 0 298 350 340 392 9.03e-15 75.5
Msa0123800 MtrunA17_Chr3g0129321 50.820 61 29 1 290 350 115 174 4.74e-14 70.5
Msa0123800 MtrunA17_Chr2g0294231 50.877 57 27 1 294 350 204 259 5.49e-14 72.4
Msa0123800 MtrunA17_Chr7g0275531 46.429 84 41 3 269 348 92 175 1.48e-13 70.9
Msa0123800 MtrunA17_Chr1g0189391 53.846 65 28 2 290 353 94 157 1.84e-13 70.5
Msa0123800 MtrunA17_Chr4g0068541 47.368 57 29 1 294 350 209 264 2.88e-13 70.5
Msa0123800 MtrunA17_Chr7g0248721 42.500 80 41 3 274 350 119 196 5.73e-13 67.4
Msa0123800 MtrunA17_Chr8g0347251 41.860 86 47 2 266 348 108 193 7.34e-13 68.9
Msa0123800 MtrunA17_Chr7g0224801 45.161 62 33 1 289 350 89 149 7.45e-13 66.2
Msa0123800 MtrunA17_Chr8g0387981 41.667 84 46 2 268 348 106 189 1.43e-12 68.2
Msa0123800 MtrunA17_Chr5g0402931 51.724 58 25 2 293 350 123 177 1.73e-12 65.5
Msa0123800 MtrunA17_Chr6g0485431 30.968 155 91 5 198 351 73 212 2.18e-12 67.4
Msa0123800 MtrunA17_Chr4g0024391 46.429 56 30 0 294 349 230 285 7.15e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123800 AT2G30590.1 56.623 385 129 14 1 356 1 376 9.97e-116 341
Msa0123800 AT3G04670.1 50.959 365 124 13 1 353 1 322 1.49e-104 311
Msa0123800 AT5G28650.1 47.790 362 140 9 1 353 1 322 3.87e-100 299
Msa0123800 AT3G04670.2 47.416 329 118 13 1 317 1 286 8.49e-76 236
Msa0123800 AT4G31550.1 51.087 184 60 6 180 350 137 303 1.10e-53 180
Msa0123800 AT4G31550.2 51.630 184 58 7 180 350 137 302 7.36e-53 178
Msa0123800 AT4G24240.1 54.545 176 55 6 187 353 182 341 1.13e-52 178
Msa0123800 AT2G24570.1 56.376 149 51 3 214 350 154 300 1.17e-52 177
Msa0123800 AT2G23320.1 70.000 110 29 2 245 351 190 298 1.17e-50 172
Msa0123800 AT1G29280.1 55.435 92 34 3 266 350 40 131 2.75e-27 108
Msa0123800 AT4G31550.3 44.218 147 51 7 180 313 137 265 4.01e-26 105
Msa0123800 AT3G58710.2 50.980 102 33 3 269 359 40 135 1.30e-25 104
Msa0123800 AT4G24240.2 47.059 136 47 6 187 313 182 301 2.07e-25 104
Msa0123800 AT2G34830.1 49.524 105 47 2 257 356 174 277 2.32e-25 106
Msa0123800 AT2G34830.2 49.524 105 47 2 257 356 183 286 2.50e-25 106
Msa0123800 AT3G58710.1 50.000 102 34 3 269 359 41 136 6.66e-25 102
Msa0123800 AT2G23320.2 66.667 72 20 2 245 313 190 260 6.83e-25 102
Msa0123800 AT4G01250.1 45.600 125 62 2 227 350 66 185 4.56e-24 100
Msa0123800 AT1G30650.1 52.874 87 36 1 269 350 188 274 8.80e-24 102
Msa0123800 AT5G52830.1 52.941 85 36 1 268 352 144 224 7.17e-22 95.5
Msa0123800 AT5G26170.1 52.308 65 30 1 289 353 109 172 1.09e-19 85.9
Msa0123800 AT4G23550.1 60.317 63 24 1 294 356 141 202 1.16e-19 88.6
Msa0123800 AT2G04880.2 58.209 67 27 1 288 354 278 343 3.01e-19 89.0
Msa0123800 AT4G18170.1 38.017 121 67 3 235 355 120 232 3.27e-19 87.4
Msa0123800 AT2G04880.1 58.209 67 27 1 288 354 302 367 3.36e-19 89.0
Msa0123800 AT5G07100.2 48.837 86 41 3 270 355 119 201 1.12e-18 84.0
Msa0123800 AT5G07100.2 48.529 68 31 2 285 352 19 82 1.30e-12 67.0
Msa0123800 AT5G07100.4 48.837 86 41 3 270 355 119 201 1.12e-18 84.0
Msa0123800 AT5G07100.4 48.529 68 31 2 285 352 19 82 1.30e-12 67.0
Msa0123800 AT5G07100.5 48.837 86 41 3 270 355 119 201 1.12e-18 84.0
Msa0123800 AT5G07100.5 48.529 68 31 2 285 352 19 82 1.30e-12 67.0
Msa0123800 AT5G07100.3 48.837 86 41 3 270 355 119 201 1.12e-18 84.0
Msa0123800 AT5G07100.3 48.529 68 31 2 285 352 19 82 1.30e-12 67.0
Msa0123800 AT2G38470.1 59.016 61 24 1 290 350 359 418 2.38e-18 86.7
Msa0123800 AT2G38470.1 54.237 59 25 2 294 352 185 241 3.05e-13 71.2
Msa0123800 AT1G13960.2 44.211 95 39 2 269 350 219 312 2.58e-18 85.5
Msa0123800 AT1G13960.2 56.452 62 24 3 290 350 72 131 2.02e-14 73.9
Msa0123800 AT4G26640.5 56.716 67 27 2 289 355 201 265 3.06e-18 85.5
Msa0123800 AT4G26640.6 56.716 67 27 2 289 355 201 265 3.06e-18 85.5
Msa0123800 AT4G26640.4 56.716 67 27 2 289 355 201 265 3.06e-18 85.5
Msa0123800 AT4G26640.3 56.716 67 27 2 289 355 201 265 3.06e-18 85.5
Msa0123800 AT4G04450.2 47.561 82 40 1 277 358 182 260 3.11e-18 85.9
Msa0123800 AT4G04450.1 47.561 82 40 1 277 358 276 354 4.11e-18 85.9
Msa0123800 AT5G07100.1 48.837 86 41 3 270 355 212 294 4.46e-18 84.3
Msa0123800 AT5G07100.1 48.529 68 31 2 285 352 112 175 2.74e-12 67.4
Msa0123800 AT1G13960.1 44.211 95 39 2 269 350 372 465 4.66e-18 85.9
Msa0123800 AT1G13960.1 48.101 79 32 4 272 350 215 284 2.98e-14 74.3
Msa0123800 AT4G26640.1 56.716 67 27 2 289 355 305 369 5.10e-18 85.5
Msa0123800 AT1G68150.1 57.895 57 24 0 294 350 236 292 5.64e-18 84.7
Msa0123800 AT4G26640.2 56.716 67 27 2 289 355 377 441 6.15e-18 85.5
Msa0123800 AT4G26640.7 56.716 67 27 2 289 355 337 401 6.43e-18 85.5
Msa0123800 AT5G45050.2 45.783 83 41 1 268 350 1131 1209 7.22e-18 85.9
Msa0123800 AT5G45050.1 45.783 83 41 1 268 350 1159 1237 7.25e-18 85.9
Msa0123800 AT5G45050.4 45.783 83 41 1 268 350 1020 1098 8.80e-18 85.5
Msa0123800 AT4G22070.4 46.154 78 42 0 277 354 281 358 2.47e-17 83.6
Msa0123800 AT4G22070.3 46.154 78 42 0 277 354 281 358 2.47e-17 83.6
Msa0123800 AT4G22070.2 46.154 78 42 0 277 354 281 358 2.47e-17 83.6
Msa0123800 AT4G22070.1 46.154 78 42 0 277 354 281 358 2.47e-17 83.6
Msa0123800 AT2G03340.1 46.154 78 41 1 273 350 395 471 2.83e-17 83.6
Msa0123800 AT2G03340.1 55.556 63 25 3 289 350 245 305 8.44e-14 72.8
Msa0123800 AT1G29860.1 44.595 74 40 1 277 350 120 192 2.94e-17 81.3
Msa0123800 AT5G49520.1 56.140 57 24 1 294 350 222 277 2.99e-17 82.8
Msa0123800 AT4G01720.1 55.738 61 27 0 294 354 240 300 3.33e-17 83.2
Msa0123800 AT4G30935.1 56.140 57 24 1 294 350 332 387 3.51e-17 82.8
Msa0123800 AT5G15130.2 55.172 58 26 0 294 351 186 243 5.80e-17 82.4
Msa0123800 AT5G15130.1 55.172 58 26 0 294 351 228 285 6.23e-17 82.4
Msa0123800 AT4G31800.2 41.096 73 43 0 278 350 96 168 1.40e-16 79.0
Msa0123800 AT5G56270.1 49.351 77 35 2 277 350 468 543 1.66e-16 81.3
Msa0123800 AT5G56270.1 50.820 61 28 2 294 354 274 332 4.56e-11 64.7
Msa0123800 AT3G01080.2 47.436 78 40 1 273 350 324 400 1.99e-16 80.9
Msa0123800 AT3G01080.2 51.562 64 28 3 290 352 201 262 6.03e-13 70.1
Msa0123800 AT3G01080.1 47.436 78 40 1 273 350 286 362 2.08e-16 80.5
Msa0123800 AT3G01080.1 51.562 64 28 3 290 352 163 224 6.15e-13 70.1
Msa0123800 AT2G37260.3 43.137 102 52 2 249 350 230 325 2.32e-16 79.7
Msa0123800 AT2G37260.3 54.237 59 25 2 294 352 86 142 1.04e-12 68.9
Msa0123800 AT4G31800.1 41.096 73 43 0 278 350 161 233 2.36e-16 79.3
Msa0123800 AT2G37260.2 43.137 102 52 2 249 350 228 323 2.48e-16 79.7
Msa0123800 AT2G37260.2 54.237 59 25 2 294 352 84 140 1.04e-12 68.9
Msa0123800 AT2G40740.1 40.860 93 52 2 259 348 138 230 2.49e-16 79.0
Msa0123800 AT2G37260.1 43.137 102 52 2 249 350 310 405 3.06e-16 80.1
Msa0123800 AT2G37260.1 54.237 59 25 2 294 352 166 222 9.51e-13 69.3
Msa0123800 AT5G45260.1 46.237 93 38 4 269 356 1187 1272 3.70e-16 80.5
Msa0123800 AT2G40740.3 40.860 93 52 2 259 348 147 239 3.87e-16 78.6
Msa0123800 AT5G43290.1 49.367 79 36 2 276 354 100 174 4.03e-16 78.2
Msa0123800 AT4G39410.1 41.860 86 46 2 269 351 196 280 4.40e-16 78.6
Msa0123800 AT2G47260.1 40.964 83 48 1 268 350 149 230 9.40e-16 77.8
Msa0123800 AT5G46350.1 51.613 62 28 2 294 355 184 243 1.02e-15 77.4
Msa0123800 AT4G26440.1 46.914 81 41 2 274 354 353 431 1.20e-15 78.6
Msa0123800 AT4G26440.1 51.562 64 28 3 292 354 176 237 1.76e-11 65.9
Msa0123800 AT1G69310.4 41.176 85 49 1 269 353 123 206 1.35e-15 76.6
Msa0123800 AT1G69310.2 41.176 85 49 1 269 353 123 206 1.35e-15 76.6
Msa0123800 AT1G69310.1 41.176 85 49 1 269 353 123 206 1.35e-15 76.6
Msa0123800 AT3G62340.1 43.902 82 45 1 271 352 96 176 1.55e-15 76.3
Msa0123800 AT2G44745.1 38.298 94 52 3 270 360 119 209 1.58e-15 75.1
Msa0123800 AT1G80840.1 36.975 119 62 4 245 350 85 203 1.82e-15 76.6
Msa0123800 AT1G18860.1 54.386 57 26 0 294 350 240 296 1.89e-15 77.8
Msa0123800 AT1G55600.1 50.725 69 30 2 290 358 304 368 1.92e-15 77.8
Msa0123800 AT1G69810.1 46.988 83 35 2 269 350 187 261 3.94e-15 76.3
Msa0123800 AT1G69810.2 46.988 83 35 2 269 350 129 203 4.65e-15 75.9
Msa0123800 AT2G21900.1 56.140 57 24 1 294 350 110 165 5.82e-15 73.2
Msa0123800 AT2G25000.2 49.123 57 29 0 294 350 104 160 6.14e-15 73.9
Msa0123800 AT2G25000.4 49.123 57 29 0 294 350 104 160 6.14e-15 73.9
Msa0123800 AT5G41570.1 43.529 85 44 2 269 350 71 154 7.89e-15 72.4
Msa0123800 AT5G64810.1 49.180 61 30 1 290 350 107 166 1.10e-14 72.4
Msa0123800 AT2G25000.3 49.123 57 29 0 294 350 126 182 1.25e-14 73.2
Msa0123800 AT2G25000.1 49.123 57 29 0 294 350 147 203 1.43e-14 73.6
Msa0123800 AT2G46130.1 50.000 62 30 1 289 350 26 86 2.29e-14 68.9
Msa0123800 AT1G64000.1 38.095 84 51 1 267 350 88 170 2.39e-14 71.2
Msa0123800 AT2G30250.1 42.857 84 43 4 275 355 307 388 3.68e-14 73.6
Msa0123800 AT3G01970.1 47.619 63 32 1 289 351 61 122 1.01e-13 68.6
Msa0123800 AT3G01080.3 51.562 64 28 3 290 352 201 262 4.61e-13 69.7
Msa0123800 AT5G13080.1 45.161 62 33 1 289 350 63 123 8.39e-13 65.9
Msa0123800 AT4G11070.1 36.975 119 63 3 233 348 89 198 1.86e-12 67.8
Msa0123800 AT4G11070.2 36.975 119 63 3 233 348 57 166 2.13e-12 67.4
Msa0123800 AT4G23810.1 45.882 85 43 2 268 349 132 216 5.37e-12 66.6
Msa0123800 AT1G62300.1 33.005 203 111 6 160 354 188 373 9.06e-12 66.6
Msa0123800 AT1G69310.3 48.333 60 26 2 294 353 148 202 2.12e-11 64.3
Msa0123800 AT4G12020.6 50.877 57 26 2 294 350 469 523 9.01e-11 63.9
Msa0123800 AT4G12020.8 50.877 57 26 2 294 350 469 523 9.01e-11 63.9
Msa0123800 AT1G66560.1 47.458 59 29 1 292 348 102 160 9.03e-11 62.0
Msa0123800 AT4G12020.1 50.877 57 26 2 294 350 469 523 9.87e-11 63.9
Msa0123800 AT4G12020.9 50.877 57 26 2 294 350 469 523 9.87e-11 63.9

Find 111 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGGGTTCTCTAAATTAA+TGG 0.160115 1_3:-51122074 Msa0123800:three_prime_UTR
TGGAAATTGTCTTCGGAAAA+TGG 0.189556 1_3:-51122054 None:intergenic
AGTATGTTATTAAACATTTC+AGG 0.193089 1_3:-51122091 Msa0123800:three_prime_UTR
CAAGAGAAAGTGGATTTCTT+AGG 0.196128 1_3:+51123687 None:intergenic
TAGAAAGAGAGAGGCTAAAA+TGG 0.224186 1_3:-51124041 Msa0123800:exon
CATGCAGTTCATGCATTTGC+AGG 0.256684 1_3:+51122334 None:intergenic
TTCTCTTGGAAACCCTTCTT+TGG 0.278708 1_3:-51123672 Msa0123800:CDS
AAAGTTGTGTCTTTGCTTCA+TGG 0.278912 1_3:-51123884 Msa0123800:CDS
TAGTAGCCTTGTCAAAATTA+AGG 0.303036 1_3:+51123447 None:intergenic
TAGAGTGAAGAGATCAATTA+AGG 0.339973 1_3:-51123103 Msa0123800:CDS
CAAAATTCAGTTCAGGAACT+TGG 0.342737 1_3:-51123716 Msa0123800:CDS
AGTGCTGGAGTATGTAAAAT+TGG 0.351484 1_3:-51122151 Msa0123800:three_prime_UTR
AACAACAGCAACAAGATTCT+AGG 0.351494 1_3:-51124501 Msa0123800:five_prime_UTR
GGAAGTTCCTTCCATTTGAT+TGG 0.353546 1_3:-51123347 Msa0123800:CDS
TGTGTCTTTGCTTCATGGTT+TGG 0.359375 1_3:-51123879 Msa0123800:CDS
GTTTGGATCATTCAAGAGTT+AGG 0.362142 1_3:-51123862 Msa0123800:CDS
AAGAAAGCAGTTTGAGGATA+AGG 0.371998 1_3:+51123815 None:intergenic
CTAAGAAATCCACTTTCTCT+TGG 0.374963 1_3:-51123686 Msa0123800:CDS
AGGAATTTAACTGTTGAAAC+TGG 0.385192 1_3:-51123929 Msa0123800:CDS
GTGATTATGCTCGCCTTCAT+AGG 0.392014 1_3:+51122375 None:intergenic
TGCTGTTGTTGATGTTTCCA+TGG 0.402615 1_3:+51124514 None:intergenic
TTATCCTCAAAATTCAGTTC+AGG 0.409567 1_3:-51123723 Msa0123800:CDS
CAAGGGATCAAGTTCATCAT+AGG 0.420309 1_3:-51123949 Msa0123800:CDS
AGAGAGAGATAGAGAGAGAG+AGG 0.424548 1_3:+51124711 None:intergenic
TTATGCCGCTGGTGTTCCTT+CGG 0.429874 1_3:+51123471 None:intergenic
TTGGGGAGTCGTTTATTTAG+AGG 0.434562 1_3:-51122196 Msa0123800:three_prime_UTR
CACCAACAATGTCGTCTACT+AGG 0.435790 1_3:-51123418 Msa0123800:CDS
AAGAGAAAGTGGATTTCTTA+GGG 0.437226 1_3:+51123688 None:intergenic
CTCTCAACATGCTTCCTAGC+AGG 0.437995 1_3:+51122430 None:intergenic
AAATTAATGGAAATTGTCTT+CGG 0.444249 1_3:-51122061 Msa0123800:three_prime_UTR
TTCGAACTCAATTCCAAAGA+AGG 0.444592 1_3:+51123659 None:intergenic
CTTTGGAATTGAGTTCGAAC+GGG 0.444791 1_3:-51123655 Msa0123800:CDS
TTTGGGTAGTAGCTTGGTTG+GGG 0.445798 1_3:-51122213 Msa0123800:three_prime_UTR
TAAGTATGTTGTCTCAATCA+AGG 0.450290 1_3:-51123967 Msa0123800:CDS
TTTGTGAAGACCTCTGTGAT+TGG 0.450591 1_3:-51122293 Msa0123800:three_prime_UTR
TAGGTAACCATTAGCATAGT+AGG 0.453570 1_3:+51122394 None:intergenic
GGGTGAGGAGAGCCCTTGAT+AGG 0.454162 1_3:+51123009 None:intergenic
TGCAGGTTGTGTTGGTACCT+TGG 0.458215 1_3:+51122351 None:intergenic
AGAAAGCAGTTTGAGGATAA+GGG 0.460093 1_3:+51123816 None:intergenic
TGGGGAGTCGTTTATTTAGA+GGG 0.465245 1_3:-51122195 Msa0123800:three_prime_UTR
AGATCGGAGCTCCAATCAAA+TGG 0.468483 1_3:+51123336 None:intergenic
ATGCTAATGGTTACCTATGA+AGG 0.471493 1_3:-51122388 Msa0123800:CDS
TTCCTCCATGAGTAATCATC+AGG 0.472648 1_3:+51123045 None:intergenic
GCATGAGAGGCTGCCCTGCT+AGG 0.472837 1_3:-51122444 Msa0123800:CDS
GAGATTGAAGGTGTGAAGAG+AGG 0.479104 1_3:+51124541 None:intergenic
GGATGAGCCTACTATGCTAA+TGG 0.481224 1_3:-51122401 Msa0123800:CDS
TTTGTTGCTGCAGCTGCTGT+TGG 0.487273 1_3:+51123555 None:intergenic
AAAATTAAGGCTTATGCCGC+TGG 0.488025 1_3:+51123460 None:intergenic
TTCCATGGGTTTGAGATTGA+AGG 0.488676 1_3:+51124529 None:intergenic
GAAGGGTTTCCAAGAGAAAG+TGG 0.494949 1_3:+51123677 None:intergenic
GCAAGCTTGTTGCTGATAGC+AGG 0.495556 1_3:+51123078 None:intergenic
CAACCAAGCTACTACCCAAA+AGG 0.497245 1_3:+51122216 None:intergenic
GATTACTCATGGAGGAAGTA+CGG 0.498681 1_3:-51123039 Msa0123800:CDS
GTATGTTATTAAACATTTCA+GGG 0.504251 1_3:-51122090 Msa0123800:three_prime_UTR
GTATTCTTATGTGTGTGTGA+TGG 0.508109 1_3:-51124592 Msa0123800:five_prime_UTR
GTACGGGCAGAAGCCTATCA+AGG 0.510514 1_3:-51123022 Msa0123800:CDS
CATGCATTTGCAGGTTGTGT+TGG 0.511678 1_3:+51122343 None:intergenic
GCTGTTGTTGATGTTTCCAT+GGG 0.514488 1_3:+51124515 None:intergenic
GACCTAGTAGACGACATTGT+TGG 0.517470 1_3:+51123416 None:intergenic
AAGGTGTGAAGAGAGGACTT+TGG 0.523425 1_3:+51124548 None:intergenic
AAACTGGTGAAGCTGTGAAT+AGG 0.523498 1_3:-51123913 Msa0123800:CDS
GTCTTCACAAATAGAATGAC+GGG 0.526956 1_3:+51122305 None:intergenic
TCGAACTCAATTCCAAAGAA+GGG 0.527334 1_3:+51123660 None:intergenic
ATTACCTCTTCTTTGAGCAA+TGG 0.528866 1_3:+51123228 None:intergenic
TGACAACAACAACTTCATCA+AGG 0.535436 1_3:-51124475 Msa0123800:intron
TTGTCTAAGAAAGCAGTTTG+AGG 0.538734 1_3:+51123809 None:intergenic
ACAACAGCAACAAGATTCTA+GGG 0.538954 1_3:-51124500 Msa0123800:five_prime_UTR
TCCCTCCTGATGATTACTCA+TGG 0.545497 1_3:-51123050 Msa0123800:CDS
GGAAGCGTGGCTAACGTGGA+TGG 0.552072 1_3:-51123368 Msa0123800:CDS
AATGCCATTGCTCAAAGAAG+AGG 0.554797 1_3:-51123232 Msa0123800:intron
ATATTTCAAGTGATGCGAGC+AGG 0.556506 1_3:-51122252 Msa0123800:three_prime_UTR
ATTTCCTCCTTGAGCATAGA+CGG 0.557646 1_3:-51123389 Msa0123800:CDS
ATTACTCATGGAGGAAGTAC+GGG 0.557772 1_3:-51123038 Msa0123800:CDS
TCTTTGGAATTGAGTTCGAA+CGG 0.559708 1_3:-51123656 Msa0123800:CDS
GAATTCTGATCTGAAGAGAT+CGG 0.560341 1_3:+51123320 None:intergenic
CACGCTTCCGTCTATGCTCA+AGG 0.561562 1_3:+51123382 None:intergenic
GAGGGAGTGATGAAGATCAC+TGG 0.564256 1_3:-51122177 Msa0123800:three_prime_UTR
AGACGGAAGCGTGGCTAACG+TGG 0.565434 1_3:-51123372 Msa0123800:CDS
GAAGATCACTGGTTAAGTGC+TGG 0.568707 1_3:-51122166 Msa0123800:three_prime_UTR
CACCTTCAATCTCAAACCCA+TGG 0.573317 1_3:-51124531 Msa0123800:five_prime_UTR
TCTCAACATGCTTCCTAGCA+GGG 0.575418 1_3:+51122431 None:intergenic
TCAAGGGCTCTCCTCACCCT+AGG 0.577561 1_3:-51123005 Msa0123800:intron
ATGTTCTGCTAGAGGTGATG+AGG 0.577879 1_3:-51123282 Msa0123800:CDS
TATAAGTGCAGCAGCATGAG+AGG 0.580000 1_3:-51122457 Msa0123800:CDS
AAGTATGTTGTCTCAATCAA+GGG 0.580385 1_3:-51123966 Msa0123800:CDS
ATCAGAATTCACAGCACAAG+AGG 0.581042 1_3:-51123307 Msa0123800:CDS
TGCTATCAGCAACAAGCTTG+CGG 0.581834 1_3:-51123076 Msa0123800:CDS
CGGAGCTCCAATCAAATGGA+AGG 0.586112 1_3:+51123340 None:intergenic
GAAGCATGTTGAGAGGTGCT+TGG 0.586233 1_3:-51122422 Msa0123800:CDS
GCTTGTTGAGCAAGGTGAAG+CGG 0.587298 1_3:+51123626 None:intergenic
GAGAGAGATAGAGAGAGAGA+GGG 0.589793 1_3:+51124712 None:intergenic
CTCCATGAGTAATCATCAGG+AGG 0.604331 1_3:+51123048 None:intergenic
CTGCAAATGCATGAACTGCA+TGG 0.609869 1_3:-51122333 Msa0123800:exon
AACAGCAGCTGCAGCAACAA+AGG 0.622186 1_3:-51123553 Msa0123800:CDS
TGTTCTGCTAGAGGTGATGA+GGG 0.623984 1_3:-51123281 Msa0123800:CDS
AAGCTGAAATGATGTTCCGA+AGG 0.624862 1_3:-51123487 Msa0123800:CDS
GGTCTTCACAAATAGAATGA+CGG 0.625126 1_3:+51122304 None:intergenic
AAGAGGAAATGTTCTGCTAG+AGG 0.625674 1_3:-51123290 Msa0123800:CDS
TCCATGAGTAATCATCAGGA+GGG 0.631195 1_3:+51123049 None:intergenic
TTGATGCAGCTTGTTGAGCA+AGG 0.637709 1_3:+51123618 None:intergenic
GGTTGGACATACCTAGGGTG+AGG 0.641458 1_3:+51122994 None:intergenic
TACGGGCAGAAGCCTATCAA+GGG 0.654538 1_3:-51123021 Msa0123800:CDS
CTTGAGCATAGACGGAAGCG+TGG 0.674043 1_3:-51123381 Msa0123800:CDS
AGGCGAGCATAATCACGCCA+AGG 0.679418 1_3:-51122368 Msa0123800:CDS
ACACACACATAAGAATACAA+AGG 0.680874 1_3:+51124597 None:intergenic
CTCCTGATGATTACTCATGG+AGG 0.692245 1_3:-51123047 Msa0123800:CDS
TGGTGATGATGCTGTTGCTG+CGG 0.703851 1_3:+51123575 None:intergenic
CTGCTAGGAAGCATGTTGAG+AGG 0.707257 1_3:-51122429 Msa0123800:CDS
ATGTTCCGAAGGAACACCAG+CGG 0.729358 1_3:-51123476 Msa0123800:CDS
ACATCTCAAGCCAATCACAG+AGG 0.746897 1_3:+51122283 None:intergenic
GCTTCCGTCTATGCTCAAGG+AGG 0.768540 1_3:+51123385 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATAAAAATAAA+AGG + chr1_3:51122398-51122417 None:intergenic 0.0%
!! TTATTAATATCATATTACAA+TGG + chr1_3:51123643-51123662 None:intergenic 10.0%
!!! AAATAAAAATCCTATTTTTG+CGG - chr1_3:51122543-51122562 Msa0123800:intron 15.0%
!!! TGTTTTCAAGTTAAAAAAAA+GGG + chr1_3:51124144-51124163 None:intergenic 15.0%
!!! ATGTTTTCAAGTTAAAAAAA+AGG + chr1_3:51124145-51124164 None:intergenic 15.0%
!!! TTATTTTTTGCTTGTTTCTT+AGG - chr1_3:51122134-51122153 Msa0123800:three_prime_UTR 20.0%
!!! TTTTTTTGTCACATGAAAAT+TGG - chr1_3:51122370-51122389 Msa0123800:CDS 20.0%
!!! TTTTTTGTCACATGAAAATT+GGG - chr1_3:51122371-51122390 Msa0123800:CDS 20.0%
!!! CTTTTTAATGTAATGTTGAA+AGG - chr1_3:51122425-51122444 Msa0123800:CDS 20.0%
!!! GTTAATTTCTGTTACTTTAA+AGG - chr1_3:51123608-51123627 Msa0123800:CDS 20.0%
!! TTAAATCTCAAATAGCAAAA+CGG + chr1_3:51123821-51123840 None:intergenic 20.0%
!!! AATTTTATTGATTCGATTCA+AGG - chr1_3:51123839-51123858 Msa0123800:CDS 20.0%
!! TGTAATGAAAATTACAAACA+TGG + chr1_3:51124088-51124107 None:intergenic 20.0%
!! AGTATGTTATTAAACATTTC+AGG - chr1_3:51124700-51124719 Msa0123800:five_prime_UTR 20.0%
!! GTATGTTATTAAACATTTCA+GGG - chr1_3:51124701-51124720 Msa0123800:five_prime_UTR 20.0%
!! AAATTAATGGAAATTGTCTT+CGG - chr1_3:51124730-51124749 Msa0123800:five_prime_UTR 20.0%
!!! GTACTTTGATGTTTTTTTGT+TGG - chr1_3:51122346-51122365 Msa0123800:CDS 25.0%
!! TATTAGTTGATTCTGATTCA+TGG - chr1_3:51122451-51122470 Msa0123800:CDS 25.0%
!! ATTAGTTGATTCTGATTCAT+GGG - chr1_3:51122452-51122471 Msa0123800:CDS 25.0%
!!! AAATGGGATTTTTTTTCATC+TGG - chr1_3:51122582-51122601 Msa0123800:intron 25.0%
!!! AATGGGATTTTTTTTCATCT+GGG - chr1_3:51122583-51122602 Msa0123800:intron 25.0%
! ATCAATGTCTGATATATTTG+TGG - chr1_3:51122628-51122647 Msa0123800:intron 25.0%
!! TTTTATAGATAGAAAGAGAG+AGG - chr1_3:51122741-51122760 Msa0123800:intron 25.0%
!! TGATGTTTCTTTTGCAATTT+GGG + chr1_3:51123008-51123027 None:intergenic 25.0%
!! ATGATGTTTCTTTTGCAATT+TGG + chr1_3:51123009-51123028 None:intergenic 25.0%
!! TTGAGTAAAGTGAACATTTT+TGG + chr1_3:51123043-51123062 None:intergenic 25.0%
!! TCTAATGGTTGATACATTAA+TGG - chr1_3:51123586-51123605 Msa0123800:CDS 25.0%
! CAAAATTATTTAAATCCCAC+AGG + chr1_3:51124009-51124028 None:intergenic 25.0%
!! CTGTGGGATTTAAATAATTT+TGG - chr1_3:51124007-51124026 Msa0123800:CDS 25.0%
!!! AAATAATTTTGGTCTATGTG+TGG - chr1_3:51124018-51124037 Msa0123800:CDS 25.0%
! TGGATATGTAATATGTTGAT+TGG - chr1_3:51124038-51124057 Msa0123800:exon 25.0%
! AAAATTACAAACATGGACAA+AGG + chr1_3:51124081-51124100 None:intergenic 25.0%
! TGACAATAATGTGCAAATAA+TGG + chr1_3:51124220-51124239 None:intergenic 25.0%
! CATTATTGTCAATCAAATGA+AGG - chr1_3:51124229-51124248 Msa0123800:intron 25.0%
ACACACACATAAGAATACAA+AGG + chr1_3:51122197-51122216 None:intergenic 30.0%
TTCAGTTCATGAGAAGATAA+AGG + chr1_3:51122504-51122523 None:intergenic 30.0%
TTCATTGTCTGGTGAAAAAT+GGG - chr1_3:51122566-51122585 Msa0123800:intron 30.0%
! GAGATGCTTTCTTTGTATTT+TGG - chr1_3:51122657-51122676 Msa0123800:intron 30.0%
TAAGTATGTTGTCTCAATCA+AGG - chr1_3:51122824-51122843 Msa0123800:intron 30.0%
AAGTATGTTGTCTCAATCAA+GGG - chr1_3:51122825-51122844 Msa0123800:intron 30.0%
AGGAATTTAACTGTTGAAAC+TGG - chr1_3:51122862-51122881 Msa0123800:intron 30.0%
TTATCCTCAAAATTCAGTTC+AGG - chr1_3:51123068-51123087 Msa0123800:CDS 30.0%
! AAGAGAAAGTGGATTTCTTA+GGG + chr1_3:51123106-51123125 None:intergenic 30.0%
!! CATAAGCCTTAATTTTGACA+AGG - chr1_3:51123338-51123357 Msa0123800:CDS 30.0%
!! TAGTAGCCTTGTCAAAATTA+AGG + chr1_3:51123347-51123366 None:intergenic 30.0%
CAAAGAAGAGGTAATTCTAA+TGG - chr1_3:51123571-51123590 Msa0123800:CDS 30.0%
TAGAGTGAAGAGATCAATTA+AGG - chr1_3:51123688-51123707 Msa0123800:CDS 30.0%
!! AACTATTTTGTTATGCTGCT+TGG - chr1_3:51123914-51123933 Msa0123800:CDS 30.0%
!! TTTTGCAATTTTGATGCTCT+AGG - chr1_3:51124179-51124198 Msa0123800:intron 30.0%
!! TGTCTTGATTTTGTTTCTTC+AGG - chr1_3:51124305-51124324 Msa0123800:intron 30.0%
!! GTCTTGATTTTGTTTCTTCA+GGG - chr1_3:51124306-51124325 Msa0123800:intron 30.0%
!! TCTTGATTTTGTTTCTTCAG+GGG - chr1_3:51124307-51124326 Msa0123800:intron 30.0%
TTCAGGGTTCTCTAAATTAA+TGG - chr1_3:51124717-51124736 Msa0123800:five_prime_UTR 30.0%
GTATTCTTATGTGTGTGTGA+TGG - chr1_3:51122199-51122218 Msa0123800:three_prime_UTR 35.0%
AACAACAGCAACAAGATTCT+AGG - chr1_3:51122290-51122309 Msa0123800:three_prime_UTR 35.0%
ACAACAGCAACAAGATTCTA+GGG - chr1_3:51122291-51122310 Msa0123800:three_prime_UTR 35.0%
TGACAACAACAACTTCATCA+AGG - chr1_3:51122316-51122335 Msa0123800:three_prime_UTR 35.0%
AGACAATGAACCGCAAAAAT+AGG + chr1_3:51122556-51122575 None:intergenic 35.0%
!! TATTTTTGCGGTTCATTGTC+TGG - chr1_3:51122555-51122574 Msa0123800:intron 35.0%
GTTCATTGTCTGGTGAAAAA+TGG - chr1_3:51122565-51122584 Msa0123800:intron 35.0%
!! CTTCTTTTGATTCAGGAACT+TGG - chr1_3:51122686-51122705 Msa0123800:intron 35.0%
TAGAAAGAGAGAGGCTAAAA+TGG - chr1_3:51122750-51122769 Msa0123800:intron 35.0%
AAAGTTGTGTCTTTGCTTCA+TGG - chr1_3:51122907-51122926 Msa0123800:intron 35.0%
GTTTGGATCATTCAAGAGTT+AGG - chr1_3:51122929-51122948 Msa0123800:intron 35.0%
AGAAAGCAGTTTGAGGATAA+GGG + chr1_3:51122978-51122997 None:intergenic 35.0%
AAGAAAGCAGTTTGAGGATA+AGG + chr1_3:51122979-51122998 None:intergenic 35.0%
TTGTCTAAGAAAGCAGTTTG+AGG + chr1_3:51122985-51123004 None:intergenic 35.0%
!!! AGTGAACATTTTTGGTGTGA+TGG + chr1_3:51123035-51123054 None:intergenic 35.0%
! AGTTCCTGAACTGAATTTTG+AGG + chr1_3:51123075-51123094 None:intergenic 35.0%
CAAAATTCAGTTCAGGAACT+TGG - chr1_3:51123075-51123094 Msa0123800:CDS 35.0%
! CAAGAGAAAGTGGATTTCTT+AGG + chr1_3:51123107-51123126 None:intergenic 35.0%
CTAAGAAATCCACTTTCTCT+TGG - chr1_3:51123105-51123124 Msa0123800:CDS 35.0%
TCGAACTCAATTCCAAAGAA+GGG + chr1_3:51123134-51123153 None:intergenic 35.0%
TTCGAACTCAATTCCAAAGA+AGG + chr1_3:51123135-51123154 None:intergenic 35.0%
!! TCTTTGGAATTGAGTTCGAA+CGG - chr1_3:51123135-51123154 Msa0123800:intron 35.0%
GAATTCTGATCTGAAGAGAT+CGG + chr1_3:51123474-51123493 None:intergenic 35.0%
ATTACCTCTTCTTTGAGCAA+TGG + chr1_3:51123566-51123585 None:intergenic 35.0%
TAACTTTGTGTGTTCTTGAC+AGG - chr1_3:51123660-51123679 Msa0123800:CDS 35.0%
ATCTCAAATAGCAAAACGGT+TGG + chr1_3:51123817-51123836 None:intergenic 35.0%
AAAAAGGGCTATCGAACATA+TGG + chr1_3:51124129-51124148 None:intergenic 35.0%
!! CTTGATTTTGTTTCTTCAGG+GGG - chr1_3:51124308-51124327 Msa0123800:intron 35.0%
TAGGTAACCATTAGCATAGT+AGG + chr1_3:51124400-51124419 None:intergenic 35.0%
ATGCTAATGGTTACCTATGA+AGG - chr1_3:51124403-51124422 Msa0123800:intron 35.0%
GTCTTCACAAATAGAATGAC+GGG + chr1_3:51124489-51124508 None:intergenic 35.0%
GGTCTTCACAAATAGAATGA+CGG + chr1_3:51124490-51124509 None:intergenic 35.0%
! AGTGCTGGAGTATGTAAAAT+TGG - chr1_3:51124640-51124659 Msa0123800:five_prime_UTR 35.0%
! TTCCATGGGTTTGAGATTGA+AGG + chr1_3:51122265-51122284 None:intergenic 40.0%
GCTGTTGTTGATGTTTCCAT+GGG + chr1_3:51122279-51122298 None:intergenic 40.0%
TGCTGTTGTTGATGTTTCCA+TGG + chr1_3:51122280-51122299 None:intergenic 40.0%
!! GTGTGTGCTTCTTTTGATTC+AGG - chr1_3:51122679-51122698 Msa0123800:intron 40.0%
CAAGGGATCAAGTTCATCAT+AGG - chr1_3:51122842-51122861 Msa0123800:intron 40.0%
AAACTGGTGAAGCTGTGAAT+AGG - chr1_3:51122878-51122897 Msa0123800:intron 40.0%
TGTGTCTTTGCTTCATGGTT+TGG - chr1_3:51122912-51122931 Msa0123800:intron 40.0%
TTCTCTTGGAAACCCTTCTT+TGG - chr1_3:51123119-51123138 Msa0123800:intron 40.0%
!! CTTTGGAATTGAGTTCGAAC+GGG - chr1_3:51123136-51123155 Msa0123800:intron 40.0%
AAGCTGAAATGATGTTCCGA+AGG - chr1_3:51123304-51123323 Msa0123800:CDS 40.0%
AAAATTAAGGCTTATGCCGC+TGG + chr1_3:51123334-51123353 None:intergenic 40.0%
ATTTCCTCCTTGAGCATAGA+CGG - chr1_3:51123402-51123421 Msa0123800:CDS 40.0%
GGAAGTTCCTTCCATTTGAT+TGG - chr1_3:51123444-51123463 Msa0123800:CDS 40.0%
ATCAGAATTCACAGCACAAG+AGG - chr1_3:51123484-51123503 Msa0123800:CDS 40.0%
AAGAGGAAATGTTCTGCTAG+AGG - chr1_3:51123501-51123520 Msa0123800:CDS 40.0%
AATGCCATTGCTCAAAGAAG+AGG - chr1_3:51123559-51123578 Msa0123800:CDS 40.0%
TCCATGAGTAATCATCAGGA+GGG + chr1_3:51123745-51123764 None:intergenic 40.0%
TTCCTCCATGAGTAATCATC+AGG + chr1_3:51123749-51123768 None:intergenic 40.0%
GATTACTCATGGAGGAAGTA+CGG - chr1_3:51123752-51123771 Msa0123800:CDS 40.0%
! ATTACTCATGGAGGAAGTAC+GGG - chr1_3:51123753-51123772 Msa0123800:CDS 40.0%
AAAACGGTTGGACATACCTA+GGG + chr1_3:51123805-51123824 None:intergenic 40.0%
! TGATTGATGTACTAGCCTGT+GGG - chr1_3:51123991-51124010 Msa0123800:CDS 40.0%
TTTGTGAAGACCTCTGTGAT+TGG - chr1_3:51124498-51124517 Msa0123800:five_prime_UTR 40.0%
! ATATTTCAAGTGATGCGAGC+AGG - chr1_3:51124539-51124558 Msa0123800:five_prime_UTR 40.0%
! GACTGCAGATTTTGCCTTTT+GGG - chr1_3:51124561-51124580 Msa0123800:five_prime_UTR 40.0%
!! TTTTGGGTAGTAGCTTGGTT+GGG - chr1_3:51124577-51124596 Msa0123800:five_prime_UTR 40.0%
TTGGGGAGTCGTTTATTTAG+AGG - chr1_3:51124595-51124614 Msa0123800:five_prime_UTR 40.0%
TGGGGAGTCGTTTATTTAGA+GGG - chr1_3:51124596-51124615 Msa0123800:five_prime_UTR 40.0%
GAGAGAGATAGAGAGAGAGA+GGG + chr1_3:51122082-51122101 None:intergenic 45.0%
AGAGAGAGATAGAGAGAGAG+AGG + chr1_3:51122083-51122102 None:intergenic 45.0%
AAGGTGTGAAGAGAGGACTT+TGG + chr1_3:51122246-51122265 None:intergenic 45.0%
! GAGATTGAAGGTGTGAAGAG+AGG + chr1_3:51122253-51122272 None:intergenic 45.0%
CACCTTCAATCTCAAACCCA+TGG - chr1_3:51122260-51122279 Msa0123800:three_prime_UTR 45.0%
GAAGGGTTTCCAAGAGAAAG+TGG + chr1_3:51123117-51123136 None:intergenic 45.0%
!! TTGATGCAGCTTGTTGAGCA+AGG + chr1_3:51123176-51123195 None:intergenic 45.0%
CACCAACAATGTCGTCTACT+AGG - chr1_3:51123373-51123392 Msa0123800:CDS 45.0%
GACCTAGTAGACGACATTGT+TGG + chr1_3:51123378-51123397 None:intergenic 45.0%
AGATCGGAGCTCCAATCAAA+TGG + chr1_3:51123458-51123477 None:intergenic 45.0%
ATGTTCTGCTAGAGGTGATG+AGG - chr1_3:51123509-51123528 Msa0123800:CDS 45.0%
TGTTCTGCTAGAGGTGATGA+GGG - chr1_3:51123510-51123529 Msa0123800:CDS 45.0%
TGCTATCAGCAACAAGCTTG+CGG - chr1_3:51123715-51123734 Msa0123800:CDS 45.0%
TCCCTCCTGATGATTACTCA+TGG - chr1_3:51123741-51123760 Msa0123800:CDS 45.0%
CTCCATGAGTAATCATCAGG+AGG + chr1_3:51123746-51123765 None:intergenic 45.0%
CTCCTGATGATTACTCATGG+AGG - chr1_3:51123744-51123763 Msa0123800:CDS 45.0%
CAAAACGGTTGGACATACCT+AGG + chr1_3:51123806-51123825 None:intergenic 45.0%
! CTGATTGATGTACTAGCCTG+TGG - chr1_3:51123990-51124009 Msa0123800:CDS 45.0%
TATAAGTGCAGCAGCATGAG+AGG - chr1_3:51124334-51124353 Msa0123800:intron 45.0%
TCTCAACATGCTTCCTAGCA+GGG + chr1_3:51124363-51124382 None:intergenic 45.0%
GGATGAGCCTACTATGCTAA+TGG - chr1_3:51124390-51124409 Msa0123800:intron 45.0%
GTGATTATGCTCGCCTTCAT+AGG + chr1_3:51124419-51124438 None:intergenic 45.0%
CATGCATTTGCAGGTTGTGT+TGG + chr1_3:51124451-51124470 None:intergenic 45.0%
CATGCAGTTCATGCATTTGC+AGG + chr1_3:51124460-51124479 None:intergenic 45.0%
CTGCAAATGCATGAACTGCA+TGG - chr1_3:51124458-51124477 Msa0123800:intron 45.0%
ACATCTCAAGCCAATCACAG+AGG + chr1_3:51124511-51124530 None:intergenic 45.0%
! GGACTGCAGATTTTGCCTTT+TGG - chr1_3:51124560-51124579 Msa0123800:five_prime_UTR 45.0%
!! TTGCCTTTTGGGTAGTAGCT+TGG - chr1_3:51124572-51124591 Msa0123800:five_prime_UTR 45.0%
CAACCAAGCTACTACCCAAA+AGG + chr1_3:51124578-51124597 None:intergenic 45.0%
!! CTTTTGGGTAGTAGCTTGGT+TGG - chr1_3:51124576-51124595 Msa0123800:five_prime_UTR 45.0%
TTTGGGTAGTAGCTTGGTTG+GGG - chr1_3:51124578-51124597 Msa0123800:five_prime_UTR 45.0%
! GAAGATCACTGGTTAAGTGC+TGG - chr1_3:51124625-51124644 Msa0123800:five_prime_UTR 45.0%
!!! ATTTTTATTTTTTTTATCTT+TGG - chr1_3:51122401-51122420 Msa0123800:CDS 5.0%
AGAGATAGAGAGAGAGAGGG+AGG + chr1_3:51122079-51122098 None:intergenic 50.0%
! GCTTGTTGAGCAAGGTGAAG+CGG + chr1_3:51123168-51123187 None:intergenic 50.0%
! TGGTGATGATGCTGTTGCTG+CGG + chr1_3:51123219-51123238 None:intergenic 50.0%
TTTGTTGCTGCAGCTGCTGT+TGG + chr1_3:51123239-51123258 None:intergenic 50.0%
AACAGCAGCTGCAGCAACAA+AGG - chr1_3:51123238-51123257 Msa0123800:CDS 50.0%
ATGTTCCGAAGGAACACCAG+CGG - chr1_3:51123315-51123334 Msa0123800:CDS 50.0%
TTATGCCGCTGGTGTTCCTT+CGG + chr1_3:51123323-51123342 None:intergenic 50.0%
CGGAGCTCCAATCAAATGGA+AGG + chr1_3:51123454-51123473 None:intergenic 50.0%
!! GCAAGCTTGTTGCTGATAGC+AGG + chr1_3:51123716-51123735 None:intergenic 50.0%
TACGGGCAGAAGCCTATCAA+GGG - chr1_3:51123770-51123789 Msa0123800:CDS 50.0%
CTCTCAACATGCTTCCTAGC+AGG + chr1_3:51124364-51124383 None:intergenic 50.0%
! CTGCTAGGAAGCATGTTGAG+AGG - chr1_3:51124362-51124381 Msa0123800:intron 50.0%
!! GAAGCATGTTGAGAGGTGCT+TGG - chr1_3:51124369-51124388 Msa0123800:intron 50.0%
! TGCAGGTTGTGTTGGTACCT+TGG + chr1_3:51124443-51124462 None:intergenic 50.0%
GAGGGAGTGATGAAGATCAC+TGG - chr1_3:51124614-51124633 Msa0123800:five_prime_UTR 50.0%
GCTTCCGTCTATGCTCAAGG+AGG + chr1_3:51123409-51123428 None:intergenic 55.0%
CACGCTTCCGTCTATGCTCA+AGG + chr1_3:51123412-51123431 None:intergenic 55.0%
CTTGAGCATAGACGGAAGCG+TGG - chr1_3:51123410-51123429 Msa0123800:CDS 55.0%
GTACGGGCAGAAGCCTATCA+AGG - chr1_3:51123769-51123788 Msa0123800:CDS 55.0%
GGTTGGACATACCTAGGGTG+AGG + chr1_3:51123800-51123819 None:intergenic 55.0%
AGGCGAGCATAATCACGCCA+AGG - chr1_3:51124423-51124442 Msa0123800:intron 55.0%
! AGACGGAAGCGTGGCTAACG+TGG - chr1_3:51123419-51123438 Msa0123800:CDS 60.0%
! GGAAGCGTGGCTAACGTGGA+TGG - chr1_3:51123423-51123442 Msa0123800:CDS 60.0%
GGGTGAGGAGAGCCCTTGAT+AGG + chr1_3:51123785-51123804 None:intergenic 60.0%
TCAAGGGCTCTCCTCACCCT+AGG - chr1_3:51123786-51123805 Msa0123800:CDS 60.0%
GCATGAGAGGCTGCCCTGCT+AGG - chr1_3:51124347-51124366 Msa0123800:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51122057 51124756 51122057 ID=Msa0123800;Name=Msa0123800
chr1_3 mRNA 51122057 51124756 51122057 ID=Msa0123800-mRNA-1;Parent=Msa0123800;Name=Msa0123800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=301|1|1|1|0.66|0.5|4|285|360
chr1_3 exon 51122057 51122486 51122057 ID=Msa0123800-mRNA-1:exon:15633;Parent=Msa0123800-mRNA-1
chr1_3 exon 51123006 51123131 51123006 ID=Msa0123800-mRNA-1:exon:15632;Parent=Msa0123800-mRNA-1
chr1_3 exon 51123233 51124064 51123233 ID=Msa0123800-mRNA-1:exon:15631;Parent=Msa0123800-mRNA-1
chr1_3 exon 51124476 51124756 51124476 ID=Msa0123800-mRNA-1:exon:15630;Parent=Msa0123800-mRNA-1
chr1_3 five_prime_UTR 51124476 51124756 51124476 ID=Msa0123800-mRNA-1:five_prime_utr;Parent=Msa0123800-mRNA-1
chr1_3 five_prime_UTR 51124045 51124064 51124045 ID=Msa0123800-mRNA-1:five_prime_utr;Parent=Msa0123800-mRNA-1
chr1_3 CDS 51123233 51124044 51123233 ID=Msa0123800-mRNA-1:cds;Parent=Msa0123800-mRNA-1
chr1_3 CDS 51123006 51123131 51123006 ID=Msa0123800-mRNA-1:cds;Parent=Msa0123800-mRNA-1
chr1_3 CDS 51122342 51122486 51122342 ID=Msa0123800-mRNA-1:cds;Parent=Msa0123800-mRNA-1
chr1_3 three_prime_UTR 51122057 51122341 51122057 ID=Msa0123800-mRNA-1:three_prime_utr;Parent=Msa0123800-mRNA-1
Gene Sequence

>Msa0123800

ATGGAAGAAGTTGAACAAGCAAGCAGAACAGCTGTTGAAAGCTGTCATAGAGTTCTAAGTATGTTGTCTCAATCAAGGGATCAAGTTCATCATAGGAATTTAACTGTTGAAACTGGTGAAGCTGTGAATAGGTTCAAGAAAGTTGTGTCTTTGCTTCATGGTTTGGATCATTCAAGAGTTAGGAAGCTTAAAAATCTTCAAAATGTCCCTTATCCTCAAACTGCTTTCTTAGACAACCCAAATTGCAAAAGAAACATCATCAACCATCACACCAAAAATGTTCACTTTACTCAAACTACTTATCCTCAAAATTCAGTTCAGGAACTTGGTTCAACCCTAAGAAATCCACTTTCTCTTGGAAACCCTTCTTTGGAATTGAGTTCGAACGGGAAAAGTCCGCTTCACCTTGCTCAACAAGCTGCATCAACTCACTATCAGTTCTATCAGCCGCAGCAACAGCATCATCACCAACAGCAGCTGCAGCAACAAAGGTTGTTGTTGCAGCAGCAGCAACAGCAGCAACAAATGAAGCATCAAGCTGAAATGATGTTCCGAAGGAACACCAGCGGCATAAGCCTTAATTTTGACAAGGCTACTAGCAGCACACCAACAATGTCGTCTACTAGGTCTTTCATTTCCTCCTTGAGCATAGACGGAAGCGTGGCTAACGTGGATGGAAGTTCCTTCCATTTGATTGGAGCTCCGATCTCTTCAGATCAGAATTCACAGCACAAGAGGAAATGTTCTGCTAGAGGTGATGAGGGAAGCTTGAAATGTAGTAGCAGTTCTAAATGCCATTGCTCAAAGAAGAGGAAGCATAGAGTGAAGAGATCAATTAAGGTGCCTGCTATCAGCAACAAGCTTGCGGATATCCCTCCTGATGATTACTCATGGAGGAAGTACGGGCAGAAGCCTATCAAGGGCTCTCCTCACCCTAGGGGGTATTATAAGTGCAGCAGCATGAGAGGCTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGATGAGCCTACTATGCTAATGGTTACCTATGAAGGCGAGCATAATCACGCCAAGGTACCAACACAACCTGCAAATGCATGA
Protein sequence

>Msa0123800

MEEVEQASRTAVESCHRVLSMLSQSRDQVHHRNLTVETGEAVNRFKKVVSLLHGLDHSRVRKLKNLQNVPYPQTAFLDNPNCKRNIINHHTKNVHFTQTTYPQNSVQELGSTLRNPLSLGNPSLELSSNGKSPLHLAQQAASTHYQFYQPQQQHHHQQQLQQQRLLLQQQQQQQQMKHQAEMMFRRNTSGISLNFDKATSSTPTMSSTRSFISSLSIDGSVANVDGSSFHLIGAPISSDQNSQHKRKCSARGDEGSLKCSSSSKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLDEPTMLMVTYEGEHNHAKVPTQPANA*