AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207870 MtrunA17_Chr4g0056791 92.000 175 11 1 1 175 1 172 1.64e-116 327
Msa1207870 MtrunA17_Chr5g0398651 63.889 108 34 1 41 143 5 112 4.09e-40 132
Msa1207870 MtrunA17_Chr4g0027171 45.385 130 58 2 57 175 69 196 9.01e-31 110
Msa1207870 MtrunA17_Chr2g0320881 48.182 110 57 0 57 166 57 166 6.10e-28 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207870 AT2G27830.1 42.276 123 65 1 57 173 68 190 2.65e-31 112

Find 55 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCAGTGTTCTTCAAAAT+TGG 0.195240 8_1:+65676043 None:intergenic
GTTTCTCTGGCTGTGAATTA+TGG 0.269497 8_1:+65676275 None:intergenic
CATTACTTTGGAAAGTGAAT+TGG 0.299193 8_1:+65675996 None:intergenic
GACAACATCAACATCTGAAT+TGG 0.306262 8_1:+65676130 None:intergenic
CAATGGATTCTTCATTTCCT+TGG 0.316089 8_1:-65675586 Msa1207870:CDS
AAACTAATGACACTGTTCTT+AGG 0.355610 8_1:-65676198 Msa1207870:CDS
GCGGAGAAGTCATGCTTATA+AGG 0.356705 8_1:+65676356 None:intergenic
TGTCTCTAAACAAAACAATA+AGG 0.368608 8_1:-65676406 Msa1207870:five_prime_UTR
CACAGTTGAAGATTTGATAA+AGG 0.384204 8_1:-65676101 Msa1207870:CDS
AGACGAGAAGTTAGTGGGCT+TGG 0.389634 8_1:-65675687 Msa1207870:CDS
ATTACTTTGGAAAGTGAATT+GGG 0.392489 8_1:+65675997 None:intergenic
GCTGTGAATTATGGAGTTTA+CGG 0.413396 8_1:+65676284 None:intergenic
AGAATTCAACGGGGTCTTAC+CGG 0.420392 8_1:+65676309 None:intergenic
GTTTACGGCAAGAATTCAAC+GGG 0.423723 8_1:+65676299 None:intergenic
ACATTGCCAGAGGGTTTCTC+TGG 0.447363 8_1:+65676262 None:intergenic
AATTTCATTACATACTCAAC+AGG 0.468231 8_1:+65675356 None:intergenic
TGGCATATCACTTCTCCTGC+AGG 0.476439 8_1:-65675528 Msa1207870:three_prime_UTR
ACATATTTGTAAGTAACATT+CGG 0.479176 8_1:-65675449 Msa1207870:three_prime_UTR
CGAGTATGTAATGTAACATT+CGG 0.485946 8_1:-65675400 Msa1207870:three_prime_UTR
ACAACATCAACATCTGAATT+GGG 0.506453 8_1:+65676131 None:intergenic
AAGCATGACTTCTCCGCCAC+AGG 0.512058 8_1:-65676350 Msa1207870:exon
CTGCATGGTGCATGAAGAAA+CGG 0.520257 8_1:+65675622 None:intergenic
GAAGCGAGACGAGAAGTTAG+TGG 0.521335 8_1:-65675693 Msa1207870:CDS
CTTCTCCGCCACAGGCTCAT+CGG 0.524598 8_1:-65676342 Msa1207870:CDS
GTTTGCATCGTCGGCGTCAG+AGG 0.530965 8_1:+65676217 None:intergenic
GTGACAATCGAAAACAGCTT+GGG 0.531357 8_1:-65676154 Msa1207870:CDS
AGTTAGTGGGCTTGGAGTCA+AGG 0.535890 8_1:-65675679 Msa1207870:CDS
GTGTCATTAGTTTGCATCGT+CGG 0.537026 8_1:+65676208 None:intergenic
GGTGACAATCGAAAACAGCT+TGG 0.547560 8_1:-65676155 Msa1207870:CDS
TGCCACATTCTCATTCTGCA+TGG 0.554134 8_1:+65675607 None:intergenic
TTTCTGCTATAAAATACCGT+TGG 0.561025 8_1:-65675548 Msa1207870:exon
TGTTACATTACATACTCGAC+AGG 0.571560 8_1:+65675405 None:intergenic
AAGCGAGACGAGAAGTTAGT+GGG 0.573862 8_1:-65675692 Msa1207870:CDS
AGATTTGATAAAGGCAGCGT+TGG 0.574906 8_1:-65676092 Msa1207870:CDS
AATTGCATAAAATTCCCTGC+AGG 0.579334 8_1:+65675513 None:intergenic
GGCATATCACTTCTCCTGCA+GGG 0.589270 8_1:-65675527 Msa1207870:three_prime_UTR
CCTCTGGCAATGTTGATCGT+CGG 0.591836 8_1:-65676252 Msa1207870:CDS
TCACAGCCAGAGAAACCCTC+TGG 0.594528 8_1:-65676268 Msa1207870:CDS
TTTCTCCGATGAGCCTGTGG+CGG 0.602364 8_1:+65676337 None:intergenic
GCCATCAAAACTGCTACTGA+AGG 0.608756 8_1:-65676176 Msa1207870:CDS
GCAGAATGAGAATGTGGCAA+TGG 0.617184 8_1:-65675603 Msa1207870:CDS
AGTTTACGGCAAGAATTCAA+CGG 0.621562 8_1:+65676298 None:intergenic
TAATGAAGATCATAACACCT+TGG 0.638724 8_1:+65676022 None:intergenic
AAATTGACTAAAATCATCCA+AGG 0.645086 8_1:+65675569 None:intergenic
CACCATGCAGAATGAGAATG+TGG 0.646013 8_1:-65675609 Msa1207870:CDS
ATTCAACGGGGTCTTACCGG+AGG 0.655189 8_1:+65676312 None:intergenic
CGACGATCAACATTGCCAGA+GGG 0.655617 8_1:+65676253 None:intergenic
TCAGATGTTGATGTTGTCTG+AGG 0.666940 8_1:-65676125 Msa1207870:CDS
CAGGAGAAGTGATATGCCAA+CGG 0.668508 8_1:+65675532 None:intergenic
TTTATGAGAAGGATAAGAGG+AGG 0.687109 8_1:-65676066 Msa1207870:CDS
GTGCATGAAGAAACGGCGGG+TGG 0.702726 8_1:+65675629 None:intergenic
CCGACGATCAACATTGCCAG+AGG 0.706693 8_1:+65676252 None:intergenic
CATGGTGCATGAAGAAACGG+CGG 0.722531 8_1:+65675625 None:intergenic
ATGGTGCATGAAGAAACGGC+GGG 0.731191 8_1:+65675626 None:intergenic
TTTACGGCAAGAATTCAACG+GGG 0.837986 8_1:+65676300 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAAATGATTGTTTTTTTT+AGG + chr8_1:65676039-65676058 None:intergenic 15.0%
!!! TCAAAATGATTGTTTTTTTT+AGG + chr8_1:65676039-65676058 None:intergenic 15.0%
!!! AAAAAACAATCATTTTGAGT+TGG - chr8_1:65676041-65676060 Msa1207870:CDS 20.0%
!! ACATATTTGTAAGTAACATT+CGG - chr8_1:65676317-65676336 Msa1207870:CDS 20.0%
!!! AAAAAACAATCATTTTGAGT+TGG - chr8_1:65676041-65676060 Msa1207870:CDS 20.0%
!! ACATATTTGTAAGTAACATT+CGG - chr8_1:65676317-65676336 Msa1207870:CDS 20.0%
!!! TTATTGTTTTGTTTAGAGAC+AGG + chr8_1:65675361-65675380 None:intergenic 25.0%
! TGTCTCTAAACAAAACAATA+AGG - chr8_1:65675360-65675379 Msa1207870:three_prime_UTR 25.0%
!! ATTACTTTGGAAAGTGAATT+GGG + chr8_1:65675772-65675791 None:intergenic 25.0%
! TTAGTAAGAAGTCATTACTT+TGG + chr8_1:65675785-65675804 None:intergenic 25.0%
!!! AATGTTCTGTTTTTCATTCA+TGG - chr8_1:65675840-65675859 Msa1207870:intron 25.0%
! AAATTGACTAAAATCATCCA+AGG + chr8_1:65676200-65676219 None:intergenic 25.0%
! AATTTCATTACATACTCAAC+AGG + chr8_1:65676413-65676432 None:intergenic 25.0%
!!! TTATTGTTTTGTTTAGAGAC+AGG + chr8_1:65675361-65675380 None:intergenic 25.0%
! TGTCTCTAAACAAAACAATA+AGG - chr8_1:65675360-65675379 Msa1207870:three_prime_UTR 25.0%
!! ATTACTTTGGAAAGTGAATT+GGG + chr8_1:65675772-65675791 None:intergenic 25.0%
! TTAGTAAGAAGTCATTACTT+TGG + chr8_1:65675785-65675804 None:intergenic 25.0%
!!! AATGTTCTGTTTTTCATTCA+TGG - chr8_1:65675840-65675859 Msa1207870:intron 25.0%
! AAATTGACTAAAATCATCCA+AGG + chr8_1:65676200-65676219 None:intergenic 25.0%
! AATTTCATTACATACTCAAC+AGG + chr8_1:65676413-65676432 None:intergenic 25.0%
AAACTAATGACACTGTTCTT+AGG - chr8_1:65675568-65675587 Msa1207870:CDS 30.0%
ACAACATCAACATCTGAATT+GGG + chr8_1:65675638-65675657 None:intergenic 30.0%
CACAGTTGAAGATTTGATAA+AGG - chr8_1:65675665-65675684 Msa1207870:CDS 30.0%
! TGTTTTATGAGAAGGATAAG+AGG - chr8_1:65675697-65675716 Msa1207870:CDS 30.0%
TAATGAAGATCATAACACCT+TGG + chr8_1:65675747-65675766 None:intergenic 30.0%
! CATTACTTTGGAAAGTGAAT+TGG + chr8_1:65675773-65675792 None:intergenic 30.0%
AGCTCAAAACAAAGAATTAG+GGG + chr8_1:65675815-65675834 None:intergenic 30.0%
CAGCTCAAAACAAAGAATTA+GGG + chr8_1:65675816-65675835 None:intergenic 30.0%
TCAGCTCAAAACAAAGAATT+AGG + chr8_1:65675817-65675836 None:intergenic 30.0%
TTTCTGCTATAAAATACCGT+TGG - chr8_1:65676218-65676237 Msa1207870:CDS 30.0%
CGAGTATGTAATGTAACATT+CGG - chr8_1:65676366-65676385 Msa1207870:exon 30.0%
AAACTAATGACACTGTTCTT+AGG - chr8_1:65675568-65675587 Msa1207870:CDS 30.0%
ACAACATCAACATCTGAATT+GGG + chr8_1:65675638-65675657 None:intergenic 30.0%
CACAGTTGAAGATTTGATAA+AGG - chr8_1:65675665-65675684 Msa1207870:CDS 30.0%
! TGTTTTATGAGAAGGATAAG+AGG - chr8_1:65675697-65675716 Msa1207870:CDS 30.0%
TAATGAAGATCATAACACCT+TGG + chr8_1:65675747-65675766 None:intergenic 30.0%
! CATTACTTTGGAAAGTGAAT+TGG + chr8_1:65675773-65675792 None:intergenic 30.0%
AGCTCAAAACAAAGAATTAG+GGG + chr8_1:65675815-65675834 None:intergenic 30.0%
CAGCTCAAAACAAAGAATTA+GGG + chr8_1:65675816-65675835 None:intergenic 30.0%
TCAGCTCAAAACAAAGAATT+AGG + chr8_1:65675817-65675836 None:intergenic 30.0%
TTTCTGCTATAAAATACCGT+TGG - chr8_1:65676218-65676237 Msa1207870:CDS 30.0%
CGAGTATGTAATGTAACATT+CGG - chr8_1:65676366-65676385 Msa1207870:exon 30.0%
AGTTTACGGCAAGAATTCAA+CGG + chr8_1:65675471-65675490 None:intergenic 35.0%
GCTGTGAATTATGGAGTTTA+CGG + chr8_1:65675485-65675504 None:intergenic 35.0%
GACAACATCAACATCTGAAT+TGG + chr8_1:65675639-65675658 None:intergenic 35.0%
TTTATGAGAAGGATAAGAGG+AGG - chr8_1:65675700-65675719 Msa1207870:CDS 35.0%
GGATCAGTGTTCTTCAAAAT+TGG + chr8_1:65675726-65675745 None:intergenic 35.0%
!! TTTTGAAGAACACTGATCCA+AGG - chr8_1:65675727-65675746 Msa1207870:intron 35.0%
!! TCTGTTTTTCATTCATGGAC+TGG - chr8_1:65675845-65675864 Msa1207870:intron 35.0%
! CAATGGATTCTTCATTTCCT+TGG - chr8_1:65676180-65676199 Msa1207870:CDS 35.0%
AATTGCATAAAATTCCCTGC+AGG + chr8_1:65676256-65676275 None:intergenic 35.0%
TGTTACATTACATACTCGAC+AGG + chr8_1:65676364-65676383 None:intergenic 35.0%
AGTTTACGGCAAGAATTCAA+CGG + chr8_1:65675471-65675490 None:intergenic 35.0%
GCTGTGAATTATGGAGTTTA+CGG + chr8_1:65675485-65675504 None:intergenic 35.0%
GACAACATCAACATCTGAAT+TGG + chr8_1:65675639-65675658 None:intergenic 35.0%
TTTATGAGAAGGATAAGAGG+AGG - chr8_1:65675700-65675719 Msa1207870:CDS 35.0%
GGATCAGTGTTCTTCAAAAT+TGG + chr8_1:65675726-65675745 None:intergenic 35.0%
!! TTTTGAAGAACACTGATCCA+AGG - chr8_1:65675727-65675746 Msa1207870:intron 35.0%
!! TCTGTTTTTCATTCATGGAC+TGG - chr8_1:65675845-65675864 Msa1207870:intron 35.0%
! CAATGGATTCTTCATTTCCT+TGG - chr8_1:65676180-65676199 Msa1207870:CDS 35.0%
AATTGCATAAAATTCCCTGC+AGG + chr8_1:65676256-65676275 None:intergenic 35.0%
TGTTACATTACATACTCGAC+AGG + chr8_1:65676364-65676383 None:intergenic 35.0%
TTTACGGCAAGAATTCAACG+GGG + chr8_1:65675469-65675488 None:intergenic 40.0%
GTTTACGGCAAGAATTCAAC+GGG + chr8_1:65675470-65675489 None:intergenic 40.0%
GTTTCTCTGGCTGTGAATTA+TGG + chr8_1:65675494-65675513 None:intergenic 40.0%
!! GTGTCATTAGTTTGCATCGT+CGG + chr8_1:65675561-65675580 None:intergenic 40.0%
!! ACCTTCAGTAGCAGTTTTGA+TGG + chr8_1:65675594-65675613 None:intergenic 40.0%
GTGACAATCGAAAACAGCTT+GGG - chr8_1:65675612-65675631 Msa1207870:CDS 40.0%
TCAGATGTTGATGTTGTCTG+AGG - chr8_1:65675641-65675660 Msa1207870:CDS 40.0%
AGATTTGATAAAGGCAGCGT+TGG - chr8_1:65675674-65675693 Msa1207870:CDS 40.0%
!!! AGCGTTGGTGTTTTATGAGA+AGG - chr8_1:65675689-65675708 Msa1207870:CDS 40.0%
!! CATTCATGGACTGGCTAATT+TGG - chr8_1:65675854-65675873 Msa1207870:intron 40.0%
!!! CAATCATTTTGAGTTGGTGC+AGG - chr8_1:65676047-65676066 Msa1207870:CDS 40.0%
TTTACGGCAAGAATTCAACG+GGG + chr8_1:65675469-65675488 None:intergenic 40.0%
GTTTACGGCAAGAATTCAAC+GGG + chr8_1:65675470-65675489 None:intergenic 40.0%
GTTTCTCTGGCTGTGAATTA+TGG + chr8_1:65675494-65675513 None:intergenic 40.0%
!! GTGTCATTAGTTTGCATCGT+CGG + chr8_1:65675561-65675580 None:intergenic 40.0%
!! ACCTTCAGTAGCAGTTTTGA+TGG + chr8_1:65675594-65675613 None:intergenic 40.0%
GTGACAATCGAAAACAGCTT+GGG - chr8_1:65675612-65675631 Msa1207870:CDS 40.0%
TCAGATGTTGATGTTGTCTG+AGG - chr8_1:65675641-65675660 Msa1207870:CDS 40.0%
AGATTTGATAAAGGCAGCGT+TGG - chr8_1:65675674-65675693 Msa1207870:CDS 40.0%
!!! AGCGTTGGTGTTTTATGAGA+AGG - chr8_1:65675689-65675708 Msa1207870:CDS 40.0%
!! CATTCATGGACTGGCTAATT+TGG - chr8_1:65675854-65675873 Msa1207870:intron 40.0%
!!! CAATCATTTTGAGTTGGTGC+AGG - chr8_1:65676047-65676066 Msa1207870:CDS 40.0%
GCGGAGAAGTCATGCTTATA+AGG + chr8_1:65675413-65675432 None:intergenic 45.0%
AGAATTCAACGGGGTCTTAC+CGG + chr8_1:65675460-65675479 None:intergenic 45.0%
GCCATCAAAACTGCTACTGA+AGG - chr8_1:65675590-65675609 Msa1207870:CDS 45.0%
GGTGACAATCGAAAACAGCT+TGG - chr8_1:65675611-65675630 Msa1207870:CDS 45.0%
AAGCGAGACGAGAAGTTAGT+GGG - chr8_1:65676074-65676093 Msa1207870:CDS 45.0%
CTGCATGGTGCATGAAGAAA+CGG + chr8_1:65676147-65676166 None:intergenic 45.0%
CACCATGCAGAATGAGAATG+TGG - chr8_1:65676157-65676176 Msa1207870:CDS 45.0%
TGCCACATTCTCATTCTGCA+TGG + chr8_1:65676162-65676181 None:intergenic 45.0%
GCAGAATGAGAATGTGGCAA+TGG - chr8_1:65676163-65676182 Msa1207870:CDS 45.0%
CAGGAGAAGTGATATGCCAA+CGG + chr8_1:65676237-65676256 None:intergenic 45.0%
GCGGAGAAGTCATGCTTATA+AGG + chr8_1:65675413-65675432 None:intergenic 45.0%
AGAATTCAACGGGGTCTTAC+CGG + chr8_1:65675460-65675479 None:intergenic 45.0%
GCCATCAAAACTGCTACTGA+AGG - chr8_1:65675590-65675609 Msa1207870:CDS 45.0%
GGTGACAATCGAAAACAGCT+TGG - chr8_1:65675611-65675630 Msa1207870:CDS 45.0%
AAGCGAGACGAGAAGTTAGT+GGG - chr8_1:65676074-65676093 Msa1207870:CDS 45.0%
CTGCATGGTGCATGAAGAAA+CGG + chr8_1:65676147-65676166 None:intergenic 45.0%
CACCATGCAGAATGAGAATG+TGG - chr8_1:65676157-65676176 Msa1207870:CDS 45.0%
TGCCACATTCTCATTCTGCA+TGG + chr8_1:65676162-65676181 None:intergenic 45.0%
GCAGAATGAGAATGTGGCAA+TGG - chr8_1:65676163-65676182 Msa1207870:CDS 45.0%
CAGGAGAAGTGATATGCCAA+CGG + chr8_1:65676237-65676256 None:intergenic 45.0%
! GTTTTTCTCCGATGAGCCTG+TGG + chr8_1:65675435-65675454 None:intergenic 50.0%
GCTCATCGGAGAAAAACCTC+CGG - chr8_1:65675438-65675457 Msa1207870:three_prime_UTR 50.0%
ACATTGCCAGAGGGTTTCTC+TGG + chr8_1:65675507-65675526 None:intergenic 50.0%
CGACGATCAACATTGCCAGA+GGG + chr8_1:65675516-65675535 None:intergenic 50.0%
CCTCTGGCAATGTTGATCGT+CGG - chr8_1:65675514-65675533 Msa1207870:three_prime_UTR 50.0%
GAAGCGAGACGAGAAGTTAG+TGG - chr8_1:65676073-65676092 Msa1207870:CDS 50.0%
!! AGACGAGAAGTTAGTGGGCT+TGG - chr8_1:65676079-65676098 Msa1207870:CDS 50.0%
!! AGTTAGTGGGCTTGGAGTCA+AGG - chr8_1:65676087-65676106 Msa1207870:CDS 50.0%
ATGGTGCATGAAGAAACGGC+GGG + chr8_1:65676143-65676162 None:intergenic 50.0%
CATGGTGCATGAAGAAACGG+CGG + chr8_1:65676144-65676163 None:intergenic 50.0%
TGGCATATCACTTCTCCTGC+AGG - chr8_1:65676238-65676257 Msa1207870:CDS 50.0%
GGCATATCACTTCTCCTGCA+GGG - chr8_1:65676239-65676258 Msa1207870:CDS 50.0%
! GTTTTTCTCCGATGAGCCTG+TGG + chr8_1:65675435-65675454 None:intergenic 50.0%
GCTCATCGGAGAAAAACCTC+CGG - chr8_1:65675438-65675457 Msa1207870:three_prime_UTR 50.0%
ACATTGCCAGAGGGTTTCTC+TGG + chr8_1:65675507-65675526 None:intergenic 50.0%
CGACGATCAACATTGCCAGA+GGG + chr8_1:65675516-65675535 None:intergenic 50.0%
CCTCTGGCAATGTTGATCGT+CGG - chr8_1:65675514-65675533 Msa1207870:three_prime_UTR 50.0%
GAAGCGAGACGAGAAGTTAG+TGG - chr8_1:65676073-65676092 Msa1207870:CDS 50.0%
!! AGACGAGAAGTTAGTGGGCT+TGG - chr8_1:65676079-65676098 Msa1207870:CDS 50.0%
!! AGTTAGTGGGCTTGGAGTCA+AGG - chr8_1:65676087-65676106 Msa1207870:CDS 50.0%
ATGGTGCATGAAGAAACGGC+GGG + chr8_1:65676143-65676162 None:intergenic 50.0%
CATGGTGCATGAAGAAACGG+CGG + chr8_1:65676144-65676163 None:intergenic 50.0%
TGGCATATCACTTCTCCTGC+AGG - chr8_1:65676238-65676257 Msa1207870:CDS 50.0%
GGCATATCACTTCTCCTGCA+GGG - chr8_1:65676239-65676258 Msa1207870:CDS 50.0%
AAGCATGACTTCTCCGCCAC+AGG - chr8_1:65675416-65675435 Msa1207870:three_prime_UTR 55.0%
TTTCTCCGATGAGCCTGTGG+CGG + chr8_1:65675432-65675451 None:intergenic 55.0%
ATTCAACGGGGTCTTACCGG+AGG + chr8_1:65675457-65675476 None:intergenic 55.0%
TCACAGCCAGAGAAACCCTC+TGG - chr8_1:65675498-65675517 Msa1207870:three_prime_UTR 55.0%
CCGACGATCAACATTGCCAG+AGG + chr8_1:65675517-65675536 None:intergenic 55.0%
AAGCATGACTTCTCCGCCAC+AGG - chr8_1:65675416-65675435 Msa1207870:three_prime_UTR 55.0%
TTTCTCCGATGAGCCTGTGG+CGG + chr8_1:65675432-65675451 None:intergenic 55.0%
ATTCAACGGGGTCTTACCGG+AGG + chr8_1:65675457-65675476 None:intergenic 55.0%
TCACAGCCAGAGAAACCCTC+TGG - chr8_1:65675498-65675517 Msa1207870:three_prime_UTR 55.0%
CCGACGATCAACATTGCCAG+AGG + chr8_1:65675517-65675536 None:intergenic 55.0%
CTTCTCCGCCACAGGCTCAT+CGG - chr8_1:65675424-65675443 Msa1207870:three_prime_UTR 60.0%
GTTTGCATCGTCGGCGTCAG+AGG + chr8_1:65675552-65675571 None:intergenic 60.0%
GTGCATGAAGAAACGGCGGG+TGG + chr8_1:65676140-65676159 None:intergenic 60.0%
CTTCTCCGCCACAGGCTCAT+CGG - chr8_1:65675424-65675443 Msa1207870:three_prime_UTR 60.0%
GTTTGCATCGTCGGCGTCAG+AGG + chr8_1:65675552-65675571 None:intergenic 60.0%
GTGCATGAAGAAACGGCGGG+TGG + chr8_1:65676140-65676159 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 65675336 65676452 65675336 ID=Msa1207870;Name=Msa1207870
chr8_1 mRNA 65675336 65676452 65675336 ID=Msa1207870-mRNA-1;Parent=Msa1207870;Name=Msa1207870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=84|1|1|1|0|0|2|223|175
chr8_1 exon 65675336 65675719 65675336 ID=Msa1207870-mRNA-1:exon:21531;Parent=Msa1207870-mRNA-1
chr8_1 exon 65676002 65676452 65676002 ID=Msa1207870-mRNA-1:exon:21530;Parent=Msa1207870-mRNA-1
chr8_1 five_prime_UTR 65676369 65676452 65676369 ID=Msa1207870-mRNA-1:five_prime_utr;Parent=Msa1207870-mRNA-1
chr8_1 CDS 65676002 65676368 65676002 ID=Msa1207870-mRNA-1:cds;Parent=Msa1207870-mRNA-1
chr8_1 CDS 65675559 65675719 65675559 ID=Msa1207870-mRNA-1:cds;Parent=Msa1207870-mRNA-1
chr8_1 three_prime_UTR 65675336 65675558 65675336 ID=Msa1207870-mRNA-1:three_prime_utr;Parent=Msa1207870-mRNA-1
Gene Sequence

>Msa1207870

ATGACTTCTCCGCCACAGGCTCATCGGAGAAAAACCTCCGGTAAGACCCCGTTGAATTCTTGCCGTAAACTCCATAATTCACAGCCAGAGAAACCCTCTGGCAATGTTGATCGTCGGTTTGTCTCAACTCCTCTGACGCCGACGATGCAAACTAATGACACTGTTCTTAGGCCATCAAAACTGCTACTGAAGGTGACAATCGAAAACAGCTTGGGCCCAATTCAGATGTTGATGTTGTCTGAGGACACAGTTGAAGATTTGATAAAGGCAGCGTTGGTGTTTTATGAGAAGGATAAGAGGAGGCCAATTTTGAAGAACACTGATCCAAGGTGTTATGATCTTCATTACTCCCAATTCACTTTCCAAAGTTTGAAGCGAGACGAGAAGTTAGTGGGCTTGGAGTCAAGGAATTTCTTTCTCTGCTCAAAATCAAAGCCACCCGCCGTTTCTTCATGCACCATGCAGAATGAGAATGTGGCAATGGATTCTTCATTTCCTTGGATGATTTTAGTCAATTTTCTGCTATAA
Protein sequence

>Msa1207870

MTSPPQAHRRKTSGKTPLNSCRKLHNSQPEKPSGNVDRRFVSTPLTPTMQTNDTVLRPSKLLLKVTIENSLGPIQMLMLSEDTVEDLIKAALVFYEKDKRRPILKNTDPRCYDLHYSQFTFQSLKRDEKLVGLESRNFFLCSKSKPPAVSSCTMQNENVAMDSSFPWMILVNFLL*