Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1190120 | XP_003608796.1 | 93.678 | 174 | 9 | 1 | 1 | 174 | 1 | 172 | 3.94e-114 | 331 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0044100 | Msa1190120 | 0.845369 | 4.239504e-59 | -8.615850e-47 |
Msa0095540 | Msa1190120 | 0.800875 | 1.173585e-48 | -8.615850e-47 |
Msa0611380 | Msa1190120 | 0.854807 | 9.626988e-62 | -8.615850e-47 |
Msa0618180 | Msa1190120 | 0.813754 | 2.180660e-51 | -8.615850e-47 |
Msa0618220 | Msa1190120 | 0.807544 | 4.799057e-50 | -8.615850e-47 |
Msa0619990 | Msa1190120 | 0.805472 | 1.313395e-49 | -8.615850e-47 |
Msa0628640 | Msa1190120 | 0.857327 | 1.759907e-62 | -8.615850e-47 |
Msa0631120 | Msa1190120 | 0.839058 | 1.988817e-57 | -8.615850e-47 |
Msa0666030 | Msa1190120 | 0.824615 | 7.334627e-54 | -8.615850e-47 |
Msa0669340 | Msa1190120 | 0.843931 | 1.034476e-58 | -8.615850e-47 |
Msa0701970 | Msa1190120 | 0.828616 | 8.143599e-55 | -8.615850e-47 |
Msa0706420 | Msa1190120 | 0.805221 | 1.482025e-49 | -8.615850e-47 |
Msa0716450 | Msa1190120 | 0.837317 | 5.582372e-57 | -8.615850e-47 |
Msa0717260 | Msa1190120 | 0.862107 | 6.405945e-64 | -8.615850e-47 |
Msa0734230 | Msa1190120 | 0.823388 | 1.422867e-53 | -8.615850e-47 |
Msa0758320 | Msa1190120 | 0.864701 | 1.006252e-64 | -8.615850e-47 |
Msa0775440 | Msa1190120 | 0.837139 | 6.200557e-57 | -8.615850e-47 |
Msa0799030 | Msa1190120 | 0.833308 | 5.747582e-56 | -8.615850e-47 |
Msa0799700 | Msa1190120 | 0.833392 | 5.475016e-56 | -8.615850e-47 |
Msa0812820 | Msa1190120 | 0.825292 | 5.075980e-54 | -8.615850e-47 |
Msa0837440 | Msa1190120 | 0.835818 | 1.344408e-56 | -8.615850e-47 |
Msa0837980 | Msa1190120 | 0.867175 | 1.661380e-65 | -8.615850e-47 |
Msa0141100 | Msa1190120 | 0.858357 | 8.706266e-63 | -8.615850e-47 |
Msa0183750 | Msa1190120 | 0.861648 | 8.848758e-64 | -8.615850e-47 |
Msa0185380 | Msa1190120 | 0.800533 | 1.378138e-48 | -8.615850e-47 |
Msa0220300 | Msa1190120 | 0.806778 | 6.974416e-50 | -8.615850e-47 |
Msa0374850 | Msa1190120 | 0.849988 | 2.270487e-60 | -8.615850e-47 |
Msa0375090 | Msa1190120 | 0.847975 | 8.228345e-60 | -8.615850e-47 |
Msa0385670 | Msa1190120 | 0.873925 | 1.007580e-67 | -8.615850e-47 |
Msa0435670 | Msa1190120 | 0.852119 | 5.690582e-61 | -8.615850e-47 |
Msa0470340 | Msa1190120 | 0.853029 | 3.130661e-61 | -8.615850e-47 |
Msa0470860 | Msa1190120 | 0.872175 | 3.892218e-67 | -8.615850e-47 |
Msa0479680 | Msa1190120 | 0.848981 | 4.332833e-60 | -8.615850e-47 |
Msa0479700 | Msa1190120 | 0.847593 | 1.048351e-59 | -8.615850e-47 |
Msa0480950 | Msa1190120 | 0.904658 | 9.751069e-80 | -8.615850e-47 |
Msa0981010 | Msa1190120 | 0.826949 | 2.048987e-54 | -8.615850e-47 |
Msa1001770 | Msa1190120 | 0.806410 | 8.340336e-50 | -8.615850e-47 |
Msa1002620 | Msa1190120 | 0.817989 | 2.476691e-52 | -8.615850e-47 |
Msa1007610 | Msa1190120 | -0.803647 | 3.154874e-49 | -8.615850e-47 |
Msa1033560 | Msa1190120 | 0.805488 | 1.302893e-49 | -8.615850e-47 |
Msa0309350 | Msa1190120 | 0.803375 | 3.592358e-49 | -8.615850e-47 |
Msa1113850 | Msa1190120 | 0.817666 | 2.929553e-52 | -8.615850e-47 |
Msa1160400 | Msa1190120 | 0.801830 | 7.481232e-49 | -8.615850e-47 |
Msa1190120 | Msa1203000 | 0.866424 | 2.880010e-65 | -8.615850e-47 |
Msa1190120 | Msa1207870 | 0.813908 | 2.017126e-51 | -8.615850e-47 |
Msa1190120 | Msa1211550 | 0.868481 | 6.322740e-66 | -8.615850e-47 |
Msa1190120 | Msa1219260 | 0.885622 | 6.936807e-72 | -8.615850e-47 |
Msa1190120 | Msa1227950 | 0.846813 | 1.715874e-59 | -8.615850e-47 |
Msa1190120 | Msa1227970 | 0.836376 | 9.703454e-57 | -8.615850e-47 |
Msa1190120 | Msa1255280 | 0.857292 | 1.803324e-62 | -8.615850e-47 |
Msa1190120 | Msa1258050 | 0.870765 | 1.139087e-66 | -8.615850e-47 |
Msa1190120 | Msa1266960 | 0.888449 | 5.845605e-73 | -8.615850e-47 |
Msa1190120 | Msa1308130 | 0.852563 | 4.251416e-61 | -8.615850e-47 |
Msa1190120 | Msa1339940 | 0.862966 | 3.483373e-64 | -8.615850e-47 |
Msa1190120 | Msa1369700 | 0.866575 | 2.580040e-65 | -8.615850e-47 |
Msa1190120 | Msa1381140 | 0.810881 | 9.244859e-51 | -8.615850e-47 |
Msa1190120 | Msa1395870 | 0.860368 | 2.169332e-63 | -8.615850e-47 |
Msa1190120 | Msa1397250 | 0.806123 | 9.585572e-50 | -8.615850e-47 |
Msa1190120 | Msa1399560 | 0.886014 | 4.940707e-72 | -8.615850e-47 |
Msa1190120 | Msa1437190 | 0.853189 | 2.815723e-61 | -8.615850e-47 |
Msa1190120 | Msa1443840 | 0.865702 | 4.875303e-65 | -8.615850e-47 |
Msa1190120 | Msa1449730 | 0.813555 | 2.412378e-51 | -8.615850e-47 |
Msa1190120 | Msa1452060 | 0.867110 | 1.742271e-65 | -8.615850e-47 |
Msa1190120 | Msa1460380 | 0.861736 | 8.319419e-64 | -8.615850e-47 |
Msa0531430 | Msa1190120 | 0.866650 | 2.442072e-65 | -8.615850e-47 |
Msa0534570 | Msa1190120 | 0.807269 | 5.490067e-50 | -8.615850e-47 |
Msa0534590 | Msa1190120 | 0.840158 | 1.028754e-57 | -8.615850e-47 |
Msa0565600 | Msa1190120 | 0.849187 | 3.799155e-60 | -8.615850e-47 |
Msa0590800 | Msa1190120 | 0.836512 | 8.959041e-57 | -8.615850e-47 |
Msa0853320 | Msa1190120 | 0.835740 | 1.407447e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1190120 | MtrunA17_Chr4g0056791 | 93.678 | 174 | 9 | 1 | 1 | 174 | 1 | 172 | 3.62e-118 | 331 |
Msa1190120 | MtrunA17_Chr5g0398651 | 64.815 | 108 | 33 | 1 | 41 | 143 | 5 | 112 | 6.75e-41 | 134 |
Msa1190120 | MtrunA17_Chr4g0027171 | 44.615 | 130 | 58 | 2 | 57 | 174 | 69 | 196 | 3.34e-29 | 106 |
Msa1190120 | MtrunA17_Chr2g0320881 | 48.182 | 110 | 56 | 1 | 57 | 165 | 57 | 166 | 5.97e-26 | 98.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1190120 | AT2G27830.1 | 45.161 | 124 | 59 | 2 | 57 | 172 | 68 | 190 | 4.60e-31 | 111 |
Find 49 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGATCAGTGTTCTTCAAAAT+TGG | 0.195240 | 8_1:+32989105 | None:intergenic |
GTTTCTCTGGCTGTGAATTA+TGG | 0.269497 | 8_1:+32989337 | None:intergenic |
CATTACTTTGGAAAGTGAAT+TGG | 0.299193 | 8_1:+32989058 | None:intergenic |
CAATGGATTCTTCATTTCCT+TGG | 0.316089 | 8_1:-32988651 | Msa1190120:CDS |
AAACTAATGACACTGTTCTT+AGG | 0.355610 | 8_1:-32989260 | Msa1190120:CDS |
GCGGAGAAGTCATGCTTATA+AGG | 0.356705 | 8_1:+32989418 | None:intergenic |
AGACGAGAAGTTAGTGGGCT+TGG | 0.389634 | 8_1:-32988749 | Msa1190120:CDS |
ATTACTTTGGAAAGTGAATT+GGG | 0.392489 | 8_1:+32989059 | None:intergenic |
CACCGTTGAAGATTTGATAA+AGG | 0.392539 | 8_1:-32989163 | Msa1190120:CDS |
GCTGTGAATTATGGAGTTTA+CGG | 0.413396 | 8_1:+32989346 | None:intergenic |
AGAATTCAACGGGGTCTTAC+CGG | 0.420392 | 8_1:+32989371 | None:intergenic |
GTTTACGGCAAGAATTCAAC+GGG | 0.423723 | 8_1:+32989361 | None:intergenic |
ACATTGCCAGAGGGTTTCTC+TGG | 0.447363 | 8_1:+32989324 | None:intergenic |
TGGCATATCACTTCTCCTGC+AGG | 0.476439 | 8_1:-32988593 | Msa1190120:three_prime_UTR |
GTGACAATCGAAAACAGCTT+GGG | 0.499309 | 8_1:-32989216 | Msa1190120:CDS |
CTGCATGGTGCATGAAGAAA+CGG | 0.506540 | 8_1:+32988687 | None:intergenic |
AAGCATGACTTCTCCGCCAC+AGG | 0.512058 | 8_1:-32989412 | Msa1190120:exon |
GAAGCGAGACGAGAAGTTAG+TGG | 0.521335 | 8_1:-32988755 | Msa1190120:CDS |
CTTCTCCGCCACAGGCTCAT+CGG | 0.524598 | 8_1:-32989404 | Msa1190120:CDS |
ACATATTAGTAAGTAACATT+CGG | 0.532723 | 8_1:-32988518 | Msa1190120:three_prime_UTR |
AGTTAGTGGGCTTGGAGTCA+AGG | 0.535890 | 8_1:-32988741 | Msa1190120:CDS |
GGTGACAATCGAAAACAGCT+TGG | 0.547560 | 8_1:-32989217 | Msa1190120:CDS |
AATTTCATTACATACTCGAC+AGG | 0.551601 | 8_1:+32988474 | None:intergenic |
TGCCACATTCTCATTCTGCA+TGG | 0.554134 | 8_1:+32988672 | None:intergenic |
TTTCTGCTATAAAATACCGT+TGG | 0.561025 | 8_1:-32988613 | Msa1190120:exon |
GTTTGCATCTTCAGCGTCAG+AGG | 0.563732 | 8_1:+32989279 | None:intergenic |
TGCCTTTATCAAATCTTCAA+CGG | 0.571891 | 8_1:+32989161 | None:intergenic |
AAGCGAGACGAGAAGTTAGT+GGG | 0.573862 | 8_1:-32988754 | Msa1190120:CDS |
AGATTTGATAAAGGCAGCGT+TGG | 0.574906 | 8_1:-32989154 | Msa1190120:CDS |
AATTGCATAAAATTCCCTGC+AGG | 0.579334 | 8_1:+32988578 | None:intergenic |
GGCATATCACTTCTCCTGCA+GGG | 0.589270 | 8_1:-32988592 | Msa1190120:three_prime_UTR |
CCTCTGGCAATGTTGATCGT+CGG | 0.591836 | 8_1:-32989314 | Msa1190120:CDS |
TCACAGCCAGAGAAACCCTC+TGG | 0.594528 | 8_1:-32989330 | Msa1190120:CDS |
TTTCTCCGATGAGCCTGTGG+CGG | 0.602364 | 8_1:+32989399 | None:intergenic |
GCCATCAAAACTGCTACTGA+AGG | 0.608756 | 8_1:-32989238 | Msa1190120:CDS |
TGCATGGTGCATGAAGAAAC+GGG | 0.610698 | 8_1:+32988688 | None:intergenic |
GCAGAATGAGAATGTGGCAA+TGG | 0.617184 | 8_1:-32988668 | Msa1190120:CDS |
AGTTTACGGCAAGAATTCAA+CGG | 0.621562 | 8_1:+32989360 | None:intergenic |
TAATGAAGATCATAACACCT+TGG | 0.638724 | 8_1:+32989084 | None:intergenic |
AAATTGACTAAAATCATCCA+AGG | 0.645086 | 8_1:+32988634 | None:intergenic |
CACCATGCAGAATGAGAATG+TGG | 0.646013 | 8_1:-32988674 | Msa1190120:CDS |
ATTCAACGGGGTCTTACCGG+AGG | 0.655189 | 8_1:+32989374 | None:intergenic |
CGACGATCAACATTGCCAGA+GGG | 0.655617 | 8_1:+32989315 | None:intergenic |
TCAGATGTTGATGTTGTCTG+AGG | 0.666940 | 8_1:-32989187 | Msa1190120:CDS |
CAGGAGAAGTGATATGCCAA+CGG | 0.668508 | 8_1:+32988597 | None:intergenic |
TTTATGAGAAGGATAAGAGG+AGG | 0.687109 | 8_1:-32989128 | Msa1190120:CDS |
CCGACGATCAACATTGCCAG+AGG | 0.706693 | 8_1:+32989314 | None:intergenic |
ATGGTGCATGAAGAAACGGG+TGG | 0.830690 | 8_1:+32988691 | None:intergenic |
TTTACGGCAAGAATTCAACG+GGG | 0.837986 | 8_1:+32989362 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAGTAAAAATAATTATAAT+GGG | + | chr8_1:32989333-32989352 | None:intergenic | 10.0% |
!! | TCAAGTAAAAATAATTATAA+TGG | + | chr8_1:32989334-32989353 | None:intergenic | 10.0% |
!! | CAAGTAAAAATAATTATAAT+GGG | + | chr8_1:32989333-32989352 | None:intergenic | 10.0% |
!! | TCAAGTAAAAATAATTATAA+TGG | + | chr8_1:32989334-32989353 | None:intergenic | 10.0% |
!!! | TCAAAATGATTGTTTTTTTT+AGG | + | chr8_1:32988962-32988981 | None:intergenic | 15.0% |
!!! | TAAAAATAATTATAATGGGA+TGG | + | chr8_1:32989329-32989348 | None:intergenic | 15.0% |
!!! | TCAAAATGATTGTTTTTTTT+AGG | + | chr8_1:32988962-32988981 | None:intergenic | 15.0% |
!!! | TAAAAATAATTATAATGGGA+TGG | + | chr8_1:32989329-32989348 | None:intergenic | 15.0% |
!!! | AAAAAACAATCATTTTGAGT+TGG | - | chr8_1:32988964-32988983 | Msa1190120:intron | 20.0% |
!! | ACATATTAGTAAGTAACATT+CGG | - | chr8_1:32989233-32989252 | Msa1190120:CDS | 20.0% |
!!! | AAAAAACAATCATTTTGAGT+TGG | - | chr8_1:32988964-32988983 | Msa1190120:intron | 20.0% |
!! | ACATATTAGTAAGTAACATT+CGG | - | chr8_1:32989233-32989252 | Msa1190120:CDS | 20.0% |
! | TGTCTCTAAACAAAACAATA+AGG | - | chr8_1:32988283-32988302 | Msa1190120:three_prime_UTR | 25.0% |
!! | ATTACTTTGGAAAGTGAATT+GGG | + | chr8_1:32988695-32988714 | None:intergenic | 25.0% |
! | TTAGTAAGAAGTCATTACTT+TGG | + | chr8_1:32988708-32988727 | None:intergenic | 25.0% |
!!! | AATGTTCTGTTTTTCATTCA+TGG | - | chr8_1:32988763-32988782 | Msa1190120:intron | 25.0% |
! | AAATTGACTAAAATCATCCA+AGG | + | chr8_1:32989120-32989139 | None:intergenic | 25.0% |
! | TGTCTCTAAACAAAACAATA+AGG | - | chr8_1:32988283-32988302 | Msa1190120:three_prime_UTR | 25.0% |
!! | ATTACTTTGGAAAGTGAATT+GGG | + | chr8_1:32988695-32988714 | None:intergenic | 25.0% |
! | TTAGTAAGAAGTCATTACTT+TGG | + | chr8_1:32988708-32988727 | None:intergenic | 25.0% |
!!! | AATGTTCTGTTTTTCATTCA+TGG | - | chr8_1:32988763-32988782 | Msa1190120:intron | 25.0% |
! | AAATTGACTAAAATCATCCA+AGG | + | chr8_1:32989120-32989139 | None:intergenic | 25.0% |
AAACTAATGACACTGTTCTT+AGG | - | chr8_1:32988491-32988510 | Msa1190120:three_prime_UTR | 30.0% | |
TGCCTTTATCAAATCTTCAA+CGG | + | chr8_1:32988593-32988612 | None:intergenic | 30.0% | |
! | TGTTTTATGAGAAGGATAAG+AGG | - | chr8_1:32988620-32988639 | Msa1190120:exon | 30.0% |
TAATGAAGATCATAACACCT+TGG | + | chr8_1:32988670-32988689 | None:intergenic | 30.0% | |
! | CATTACTTTGGAAAGTGAAT+TGG | + | chr8_1:32988696-32988715 | None:intergenic | 30.0% |
AGCTCAAAACATAGAATTAG+GGG | + | chr8_1:32988738-32988757 | None:intergenic | 30.0% | |
CAGCTCAAAACATAGAATTA+GGG | + | chr8_1:32988739-32988758 | None:intergenic | 30.0% | |
TCAGCTCAAAACATAGAATT+AGG | + | chr8_1:32988740-32988759 | None:intergenic | 30.0% | |
TTTCTGCTATAAAATACCGT+TGG | - | chr8_1:32989138-32989157 | Msa1190120:CDS | 30.0% | |
AATTTCATTACATACTCGAC+AGG | + | chr8_1:32989280-32989299 | None:intergenic | 30.0% | |
AAACTAATGACACTGTTCTT+AGG | - | chr8_1:32988491-32988510 | Msa1190120:three_prime_UTR | 30.0% | |
TGCCTTTATCAAATCTTCAA+CGG | + | chr8_1:32988593-32988612 | None:intergenic | 30.0% | |
! | TGTTTTATGAGAAGGATAAG+AGG | - | chr8_1:32988620-32988639 | Msa1190120:exon | 30.0% |
TAATGAAGATCATAACACCT+TGG | + | chr8_1:32988670-32988689 | None:intergenic | 30.0% | |
! | CATTACTTTGGAAAGTGAAT+TGG | + | chr8_1:32988696-32988715 | None:intergenic | 30.0% |
AGCTCAAAACATAGAATTAG+GGG | + | chr8_1:32988738-32988757 | None:intergenic | 30.0% | |
CAGCTCAAAACATAGAATTA+GGG | + | chr8_1:32988739-32988758 | None:intergenic | 30.0% | |
TCAGCTCAAAACATAGAATT+AGG | + | chr8_1:32988740-32988759 | None:intergenic | 30.0% | |
TTTCTGCTATAAAATACCGT+TGG | - | chr8_1:32989138-32989157 | Msa1190120:CDS | 30.0% | |
AATTTCATTACATACTCGAC+AGG | + | chr8_1:32989280-32989299 | None:intergenic | 30.0% | |
AGTTTACGGCAAGAATTCAA+CGG | + | chr8_1:32988394-32988413 | None:intergenic | 35.0% | |
GCTGTGAATTATGGAGTTTA+CGG | + | chr8_1:32988408-32988427 | None:intergenic | 35.0% | |
CACCGTTGAAGATTTGATAA+AGG | - | chr8_1:32988588-32988607 | Msa1190120:three_prime_UTR | 35.0% | |
TTTATGAGAAGGATAAGAGG+AGG | - | chr8_1:32988623-32988642 | Msa1190120:exon | 35.0% | |
GGATCAGTGTTCTTCAAAAT+TGG | + | chr8_1:32988649-32988668 | None:intergenic | 35.0% | |
!! | TTTTGAAGAACACTGATCCA+AGG | - | chr8_1:32988650-32988669 | Msa1190120:CDS | 35.0% |
!! | TCTGTTTTTCATTCATGGAC+TGG | - | chr8_1:32988768-32988787 | Msa1190120:intron | 35.0% |
! | CAATGGATTCTTCATTTCCT+TGG | - | chr8_1:32989100-32989119 | Msa1190120:CDS | 35.0% |
AATTGCATAAAATTCCCTGC+AGG | + | chr8_1:32989176-32989195 | None:intergenic | 35.0% | |
AGTTTACGGCAAGAATTCAA+CGG | + | chr8_1:32988394-32988413 | None:intergenic | 35.0% | |
GCTGTGAATTATGGAGTTTA+CGG | + | chr8_1:32988408-32988427 | None:intergenic | 35.0% | |
CACCGTTGAAGATTTGATAA+AGG | - | chr8_1:32988588-32988607 | Msa1190120:three_prime_UTR | 35.0% | |
TTTATGAGAAGGATAAGAGG+AGG | - | chr8_1:32988623-32988642 | Msa1190120:exon | 35.0% | |
GGATCAGTGTTCTTCAAAAT+TGG | + | chr8_1:32988649-32988668 | None:intergenic | 35.0% | |
!! | TTTTGAAGAACACTGATCCA+AGG | - | chr8_1:32988650-32988669 | Msa1190120:CDS | 35.0% |
!! | TCTGTTTTTCATTCATGGAC+TGG | - | chr8_1:32988768-32988787 | Msa1190120:intron | 35.0% |
! | CAATGGATTCTTCATTTCCT+TGG | - | chr8_1:32989100-32989119 | Msa1190120:CDS | 35.0% |
AATTGCATAAAATTCCCTGC+AGG | + | chr8_1:32989176-32989195 | None:intergenic | 35.0% | |
TTTACGGCAAGAATTCAACG+GGG | + | chr8_1:32988392-32988411 | None:intergenic | 40.0% | |
GTTTACGGCAAGAATTCAAC+GGG | + | chr8_1:32988393-32988412 | None:intergenic | 40.0% | |
GTTTCTCTGGCTGTGAATTA+TGG | + | chr8_1:32988417-32988436 | None:intergenic | 40.0% | |
!! | ACCTTCAGTAGCAGTTTTGA+TGG | + | chr8_1:32988517-32988536 | None:intergenic | 40.0% |
GTGACAATCGAAAACAGCTT+GGG | - | chr8_1:32988535-32988554 | Msa1190120:three_prime_UTR | 40.0% | |
TCAGATGTTGATGTTGTCTG+AGG | - | chr8_1:32988564-32988583 | Msa1190120:three_prime_UTR | 40.0% | |
AGATTTGATAAAGGCAGCGT+TGG | - | chr8_1:32988597-32988616 | Msa1190120:three_prime_UTR | 40.0% | |
!!! | AGCGTTGGTGTTTTATGAGA+AGG | - | chr8_1:32988612-32988631 | Msa1190120:exon | 40.0% |
!! | CATTCATGGACTGGCTAATT+TGG | - | chr8_1:32988777-32988796 | Msa1190120:intron | 40.0% |
!!! | CAATCATTTTGAGTTGGTGC+AGG | - | chr8_1:32988970-32988989 | Msa1190120:intron | 40.0% |
TTTACGGCAAGAATTCAACG+GGG | + | chr8_1:32988392-32988411 | None:intergenic | 40.0% | |
GTTTACGGCAAGAATTCAAC+GGG | + | chr8_1:32988393-32988412 | None:intergenic | 40.0% | |
GTTTCTCTGGCTGTGAATTA+TGG | + | chr8_1:32988417-32988436 | None:intergenic | 40.0% | |
!! | ACCTTCAGTAGCAGTTTTGA+TGG | + | chr8_1:32988517-32988536 | None:intergenic | 40.0% |
GTGACAATCGAAAACAGCTT+GGG | - | chr8_1:32988535-32988554 | Msa1190120:three_prime_UTR | 40.0% | |
TCAGATGTTGATGTTGTCTG+AGG | - | chr8_1:32988564-32988583 | Msa1190120:three_prime_UTR | 40.0% | |
AGATTTGATAAAGGCAGCGT+TGG | - | chr8_1:32988597-32988616 | Msa1190120:three_prime_UTR | 40.0% | |
!!! | AGCGTTGGTGTTTTATGAGA+AGG | - | chr8_1:32988612-32988631 | Msa1190120:exon | 40.0% |
!! | CATTCATGGACTGGCTAATT+TGG | - | chr8_1:32988777-32988796 | Msa1190120:intron | 40.0% |
!!! | CAATCATTTTGAGTTGGTGC+AGG | - | chr8_1:32988970-32988989 | Msa1190120:intron | 40.0% |
GCGGAGAAGTCATGCTTATA+AGG | + | chr8_1:32988336-32988355 | None:intergenic | 45.0% | |
AGAATTCAACGGGGTCTTAC+CGG | + | chr8_1:32988383-32988402 | None:intergenic | 45.0% | |
GCCATCAAAACTGCTACTGA+AGG | - | chr8_1:32988513-32988532 | Msa1190120:three_prime_UTR | 45.0% | |
GGTGACAATCGAAAACAGCT+TGG | - | chr8_1:32988534-32988553 | Msa1190120:three_prime_UTR | 45.0% | |
AAGCGAGACGAGAAGTTAGT+GGG | - | chr8_1:32988997-32989016 | Msa1190120:intron | 45.0% | |
TGCATGGTGCATGAAGAAAC+GGG | + | chr8_1:32989066-32989085 | None:intergenic | 45.0% | |
CTGCATGGTGCATGAAGAAA+CGG | + | chr8_1:32989067-32989086 | None:intergenic | 45.0% | |
CACCATGCAGAATGAGAATG+TGG | - | chr8_1:32989077-32989096 | Msa1190120:CDS | 45.0% | |
TGCCACATTCTCATTCTGCA+TGG | + | chr8_1:32989082-32989101 | None:intergenic | 45.0% | |
GCAGAATGAGAATGTGGCAA+TGG | - | chr8_1:32989083-32989102 | Msa1190120:CDS | 45.0% | |
CAGGAGAAGTGATATGCCAA+CGG | + | chr8_1:32989157-32989176 | None:intergenic | 45.0% | |
GCGGAGAAGTCATGCTTATA+AGG | + | chr8_1:32988336-32988355 | None:intergenic | 45.0% | |
AGAATTCAACGGGGTCTTAC+CGG | + | chr8_1:32988383-32988402 | None:intergenic | 45.0% | |
GCCATCAAAACTGCTACTGA+AGG | - | chr8_1:32988513-32988532 | Msa1190120:three_prime_UTR | 45.0% | |
GGTGACAATCGAAAACAGCT+TGG | - | chr8_1:32988534-32988553 | Msa1190120:three_prime_UTR | 45.0% | |
AAGCGAGACGAGAAGTTAGT+GGG | - | chr8_1:32988997-32989016 | Msa1190120:intron | 45.0% | |
TGCATGGTGCATGAAGAAAC+GGG | + | chr8_1:32989066-32989085 | None:intergenic | 45.0% | |
CTGCATGGTGCATGAAGAAA+CGG | + | chr8_1:32989067-32989086 | None:intergenic | 45.0% | |
CACCATGCAGAATGAGAATG+TGG | - | chr8_1:32989077-32989096 | Msa1190120:CDS | 45.0% | |
TGCCACATTCTCATTCTGCA+TGG | + | chr8_1:32989082-32989101 | None:intergenic | 45.0% | |
GCAGAATGAGAATGTGGCAA+TGG | - | chr8_1:32989083-32989102 | Msa1190120:CDS | 45.0% | |
CAGGAGAAGTGATATGCCAA+CGG | + | chr8_1:32989157-32989176 | None:intergenic | 45.0% | |
! | GTTTTTCTCCGATGAGCCTG+TGG | + | chr8_1:32988358-32988377 | None:intergenic | 50.0% |
GCTCATCGGAGAAAAACCTC+CGG | - | chr8_1:32988361-32988380 | Msa1190120:three_prime_UTR | 50.0% | |
ACATTGCCAGAGGGTTTCTC+TGG | + | chr8_1:32988430-32988449 | None:intergenic | 50.0% | |
CGACGATCAACATTGCCAGA+GGG | + | chr8_1:32988439-32988458 | None:intergenic | 50.0% | |
CCTCTGGCAATGTTGATCGT+CGG | - | chr8_1:32988437-32988456 | Msa1190120:three_prime_UTR | 50.0% | |
GTTTGCATCTTCAGCGTCAG+AGG | + | chr8_1:32988475-32988494 | None:intergenic | 50.0% | |
GAAGCGAGACGAGAAGTTAG+TGG | - | chr8_1:32988996-32989015 | Msa1190120:intron | 50.0% | |
!! | AGACGAGAAGTTAGTGGGCT+TGG | - | chr8_1:32989002-32989021 | Msa1190120:intron | 50.0% |
!! | AGTTAGTGGGCTTGGAGTCA+AGG | - | chr8_1:32989010-32989029 | Msa1190120:intron | 50.0% |
ATGGTGCATGAAGAAACGGG+TGG | + | chr8_1:32989063-32989082 | None:intergenic | 50.0% | |
TGGCATATCACTTCTCCTGC+AGG | - | chr8_1:32989158-32989177 | Msa1190120:CDS | 50.0% | |
GGCATATCACTTCTCCTGCA+GGG | - | chr8_1:32989159-32989178 | Msa1190120:CDS | 50.0% | |
! | GTTTTTCTCCGATGAGCCTG+TGG | + | chr8_1:32988358-32988377 | None:intergenic | 50.0% |
GCTCATCGGAGAAAAACCTC+CGG | - | chr8_1:32988361-32988380 | Msa1190120:three_prime_UTR | 50.0% | |
ACATTGCCAGAGGGTTTCTC+TGG | + | chr8_1:32988430-32988449 | None:intergenic | 50.0% | |
CGACGATCAACATTGCCAGA+GGG | + | chr8_1:32988439-32988458 | None:intergenic | 50.0% | |
CCTCTGGCAATGTTGATCGT+CGG | - | chr8_1:32988437-32988456 | Msa1190120:three_prime_UTR | 50.0% | |
GTTTGCATCTTCAGCGTCAG+AGG | + | chr8_1:32988475-32988494 | None:intergenic | 50.0% | |
GAAGCGAGACGAGAAGTTAG+TGG | - | chr8_1:32988996-32989015 | Msa1190120:intron | 50.0% | |
!! | AGACGAGAAGTTAGTGGGCT+TGG | - | chr8_1:32989002-32989021 | Msa1190120:intron | 50.0% |
!! | AGTTAGTGGGCTTGGAGTCA+AGG | - | chr8_1:32989010-32989029 | Msa1190120:intron | 50.0% |
ATGGTGCATGAAGAAACGGG+TGG | + | chr8_1:32989063-32989082 | None:intergenic | 50.0% | |
TGGCATATCACTTCTCCTGC+AGG | - | chr8_1:32989158-32989177 | Msa1190120:CDS | 50.0% | |
GGCATATCACTTCTCCTGCA+GGG | - | chr8_1:32989159-32989178 | Msa1190120:CDS | 50.0% | |
AAGCATGACTTCTCCGCCAC+AGG | - | chr8_1:32988339-32988358 | Msa1190120:three_prime_UTR | 55.0% | |
TTTCTCCGATGAGCCTGTGG+CGG | + | chr8_1:32988355-32988374 | None:intergenic | 55.0% | |
ATTCAACGGGGTCTTACCGG+AGG | + | chr8_1:32988380-32988399 | None:intergenic | 55.0% | |
TCACAGCCAGAGAAACCCTC+TGG | - | chr8_1:32988421-32988440 | Msa1190120:three_prime_UTR | 55.0% | |
CCGACGATCAACATTGCCAG+AGG | + | chr8_1:32988440-32988459 | None:intergenic | 55.0% | |
AAGCATGACTTCTCCGCCAC+AGG | - | chr8_1:32988339-32988358 | Msa1190120:three_prime_UTR | 55.0% | |
TTTCTCCGATGAGCCTGTGG+CGG | + | chr8_1:32988355-32988374 | None:intergenic | 55.0% | |
ATTCAACGGGGTCTTACCGG+AGG | + | chr8_1:32988380-32988399 | None:intergenic | 55.0% | |
TCACAGCCAGAGAAACCCTC+TGG | - | chr8_1:32988421-32988440 | Msa1190120:three_prime_UTR | 55.0% | |
CCGACGATCAACATTGCCAG+AGG | + | chr8_1:32988440-32988459 | None:intergenic | 55.0% | |
CTTCTCCGCCACAGGCTCAT+CGG | - | chr8_1:32988347-32988366 | Msa1190120:three_prime_UTR | 60.0% | |
CTTCTCCGCCACAGGCTCAT+CGG | - | chr8_1:32988347-32988366 | Msa1190120:three_prime_UTR | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 32988283 | 32989490 | 32988283 | ID=Msa1190120;Name=Msa1190120 |
chr8_1 | mRNA | 32988283 | 32989490 | 32988283 | ID=Msa1190120-mRNA-1;Parent=Msa1190120;Name=Msa1190120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=60|1|1|1|0|0|2|341|174 |
chr8_1 | exon | 32988283 | 32988781 | 32988283 | ID=Msa1190120-mRNA-1:exon:11094;Parent=Msa1190120-mRNA-1 |
chr8_1 | exon | 32989064 | 32989490 | 32989064 | ID=Msa1190120-mRNA-1:exon:11093;Parent=Msa1190120-mRNA-1 |
chr8_1 | five_prime_UTR | 32989431 | 32989490 | 32989431 | ID=Msa1190120-mRNA-1:five_prime_utr;Parent=Msa1190120-mRNA-1 |
chr8_1 | CDS | 32989064 | 32989430 | 32989064 | ID=Msa1190120-mRNA-1:cds;Parent=Msa1190120-mRNA-1 |
chr8_1 | CDS | 32988624 | 32988781 | 32988624 | ID=Msa1190120-mRNA-1:cds;Parent=Msa1190120-mRNA-1 |
chr8_1 | three_prime_UTR | 32988283 | 32988623 | 32988283 | ID=Msa1190120-mRNA-1:three_prime_utr;Parent=Msa1190120-mRNA-1 |
Gene Sequence |
Protein sequence |