Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480950 | XP_003608796.1 | 93.103 | 174 | 10 | 1 | 1 | 174 | 1 | 172 | 3.65e-113 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480950 | G7JK81 | 93.103 | 174 | 10 | 1 | 1 | 174 | 1 | 172 | 1.74e-113 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036430 | Msa0480950 | 0.815385 | 9.499406e-52 | -8.615850e-47 |
| Msa0036960 | Msa0480950 | 0.809852 | 1.541724e-50 | -8.615850e-47 |
| Msa0044100 | Msa0480950 | 0.812166 | 4.861794e-51 | -8.615850e-47 |
| Msa0141100 | Msa0480950 | 0.876977 | 9.084424e-69 | -8.615850e-47 |
| Msa0183750 | Msa0480950 | 0.838236 | 3.242126e-57 | -8.615850e-47 |
| Msa0185380 | Msa0480950 | 0.819071 | 1.407846e-52 | -8.615850e-47 |
| Msa0191040 | Msa0480950 | 0.845230 | 4.622927e-59 | -8.615850e-47 |
| Msa0220300 | Msa0480950 | 0.839781 | 1.290211e-57 | -8.615850e-47 |
| Msa0233340 | Msa0480950 | 0.845114 | 4.970308e-59 | -8.615850e-47 |
| Msa0374850 | Msa0480950 | 0.867355 | 1.455267e-65 | -8.615850e-47 |
| Msa0375090 | Msa0480950 | 0.878130 | 3.602216e-69 | -8.615850e-47 |
| Msa0385670 | Msa0480950 | 0.842362 | 2.707827e-58 | -8.615850e-47 |
| Msa0435670 | Msa0480950 | 0.820965 | 5.189079e-53 | -8.615850e-47 |
| Msa0470340 | Msa0480950 | 0.881736 | 1.872598e-70 | -8.615850e-47 |
| Msa0470860 | Msa0480950 | 0.860821 | 1.580768e-63 | -8.615850e-47 |
| Msa0479680 | Msa0480950 | 0.818501 | 1.896701e-52 | -8.615850e-47 |
| Msa0479700 | Msa0480950 | 0.810240 | 1.271746e-50 | -8.615850e-47 |
| Msa0480950 | Msa0481110 | 0.832183 | 1.093337e-55 | -8.615850e-47 |
| Msa0480950 | Msa0531430 | 0.879641 | 1.055577e-69 | -8.615850e-47 |
| Msa0480950 | Msa0534570 | 0.849335 | 3.455039e-60 | -8.615850e-47 |
| Msa0480950 | Msa0534590 | 0.871234 | 7.979677e-67 | -8.615850e-47 |
| Msa0480950 | Msa0565600 | 0.849272 | 3.596161e-60 | -8.615850e-47 |
| Msa0480950 | Msa0590800 | 0.868931 | 4.523027e-66 | -8.615850e-47 |
| Msa0480950 | Msa0611380 | 0.866721 | 2.318213e-65 | -8.615850e-47 |
| Msa0480950 | Msa0618180 | 0.844807 | 6.013417e-59 | -8.615850e-47 |
| Msa0480950 | Msa0618220 | 0.855233 | 7.238970e-62 | -8.615850e-47 |
| Msa0480950 | Msa0618290 | 0.807558 | 4.765904e-50 | -8.615850e-47 |
| Msa0480950 | Msa0619990 | 0.802538 | 5.350200e-49 | -8.615850e-47 |
| Msa0480950 | Msa0628640 | 0.878600 | 2.463748e-69 | -8.615850e-47 |
| Msa0480950 | Msa0631120 | 0.869512 | 2.929248e-66 | -8.615850e-47 |
| Msa0480950 | Msa0650070 | 0.803989 | 2.678604e-49 | -8.615850e-47 |
| Msa0480950 | Msa0666030 | 0.856252 | 3.648561e-62 | -8.615850e-47 |
| Msa0480950 | Msa0669340 | 0.858853 | 6.193128e-63 | -8.615850e-47 |
| Msa0480950 | Msa0684500 | 0.802119 | 6.527257e-49 | -8.615850e-47 |
| Msa0480950 | Msa0692060 | 0.806206 | 9.207546e-50 | -8.615850e-47 |
| Msa0480950 | Msa0701970 | 0.850213 | 1.963820e-60 | -8.615850e-47 |
| Msa0480950 | Msa0706420 | 0.809452 | 1.879438e-50 | -8.615850e-47 |
| Msa0480950 | Msa0716450 | 0.855567 | 5.785776e-62 | -8.615850e-47 |
| Msa0480950 | Msa0717260 | 0.884640 | 1.613488e-71 | -8.615850e-47 |
| Msa0480950 | Msa0734230 | 0.819331 | 1.228450e-52 | -8.615850e-47 |
| Msa0480950 | Msa0758320 | 0.886412 | 3.498123e-72 | -8.615850e-47 |
| Msa0480950 | Msa0775440 | 0.849430 | 3.251227e-60 | -8.615850e-47 |
| Msa0480950 | Msa0799030 | 0.865386 | 6.132421e-65 | -8.615850e-47 |
| Msa0480950 | Msa0799700 | 0.858461 | 8.109303e-63 | -8.615850e-47 |
| Msa0480950 | Msa0810020 | 0.803475 | 3.425584e-49 | -8.615850e-47 |
| Msa0480950 | Msa0812820 | 0.835754 | 1.395816e-56 | -8.615850e-47 |
| Msa0480950 | Msa0837440 | 0.842091 | 3.194688e-58 | -8.615850e-47 |
| Msa0480950 | Msa0837980 | 0.882712 | 8.278430e-71 | -8.615850e-47 |
| Msa0480950 | Msa0853320 | 0.879117 | 1.618065e-69 | -8.615850e-47 |
| Msa0480950 | Msa0981010 | 0.819450 | 1.154080e-52 | -8.615850e-47 |
| Msa0480950 | Msa1001770 | 0.813860 | 2.066245e-51 | -8.615850e-47 |
| Msa0480950 | Msa1002620 | 0.861399 | 1.054262e-63 | -8.615850e-47 |
| Msa0480950 | Msa1033560 | 0.842660 | 2.257385e-58 | -8.615850e-47 |
| Msa0480950 | Msa1113850 | 0.842446 | 2.572496e-58 | -8.615850e-47 |
| Msa0480950 | Msa1160400 | 0.833726 | 4.518438e-56 | -8.615850e-47 |
| Msa0480950 | Msa1190120 | 0.904658 | 9.751069e-80 | -8.615850e-47 |
| Msa0480950 | Msa1201890 | 0.802727 | 4.891604e-49 | -8.615850e-47 |
| Msa0480950 | Msa1203000 | 0.885398 | 8.413064e-72 | -8.615850e-47 |
| Msa0480950 | Msa1207870 | 0.803878 | 2.825698e-49 | -8.615850e-47 |
| Msa0480950 | Msa1211550 | 0.870946 | 9.937180e-67 | -8.615850e-47 |
| Msa0480950 | Msa1217940 | 0.855268 | 7.070919e-62 | -8.615850e-47 |
| Msa0480950 | Msa1218480 | 0.801419 | 9.086240e-49 | -8.615850e-47 |
| Msa0480950 | Msa1219260 | 0.893876 | 4.176526e-75 | -8.615850e-47 |
| Msa0480950 | Msa1227950 | 0.829024 | 6.487079e-55 | -8.615850e-47 |
| Msa0480950 | Msa1227970 | 0.825021 | 5.882438e-54 | -8.615850e-47 |
| Msa0480950 | Msa1255280 | 0.892753 | 1.186800e-74 | -8.615850e-47 |
| Msa0480950 | Msa1258050 | 0.940255 | 3.190023e-100 | -8.615850e-47 |
| Msa0480950 | Msa1266960 | 0.880901 | 3.745512e-70 | -8.615850e-47 |
| Msa0480950 | Msa1308130 | 0.820966 | 5.187415e-53 | -8.615850e-47 |
| Msa0480950 | Msa1339940 | 0.854766 | 9.893639e-62 | -8.615850e-47 |
| Msa0480950 | Msa1369700 | 0.834847 | 2.365234e-56 | -8.615850e-47 |
| Msa0480950 | Msa1381140 | 0.815361 | 9.618257e-52 | -8.615850e-47 |
| Msa0480950 | Msa1395870 | 0.885292 | 9.219764e-72 | -8.615850e-47 |
| Msa0480950 | Msa1397250 | 0.803600 | 3.226325e-49 | -8.615850e-47 |
| Msa0480950 | Msa1399560 | 0.886503 | 3.233287e-72 | -8.615850e-47 |
| Msa0480950 | Msa1401150 | 0.805848 | 1.094657e-49 | -8.615850e-47 |
| Msa0480950 | Msa1437190 | 0.832954 | 7.039860e-56 | -8.615850e-47 |
| Msa0480950 | Msa1443840 | 0.872673 | 2.654627e-67 | -8.615850e-47 |
| Msa0480950 | Msa1449730 | 0.818654 | 1.750858e-52 | -8.615850e-47 |
| Msa0480950 | Msa1452060 | 0.861636 | 8.923481e-64 | -8.615850e-47 |
| Msa0480950 | Msa1460380 | 0.850349 | 1.798461e-60 | -8.615850e-47 |
| Msa0251240 | Msa0480950 | 0.812971 | 3.240280e-51 | -8.615850e-47 |
| Msa0266450 | Msa0480950 | 0.802482 | 5.493041e-49 | -8.615850e-47 |
| Msa0309350 | Msa0480950 | 0.802473 | 5.517619e-49 | -8.615850e-47 |
| Msa0311690 | Msa0480950 | 0.837670 | 4.533567e-57 | -8.615850e-47 |
| Msa0315250 | Msa0480950 | 0.814026 | 1.900160e-51 | -8.615850e-47 |
| Msa0326540 | Msa0480950 | 0.800955 | 1.130448e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480950 | MtrunA17_Chr4g0056791 | 93.103 | 174 | 10 | 1 | 1 | 174 | 1 | 172 | 3.36e-117 | 328 |
| Msa0480950 | MtrunA17_Chr5g0398651 | 64.815 | 108 | 33 | 1 | 41 | 143 | 5 | 112 | 4.05e-41 | 134 |
| Msa0480950 | MtrunA17_Chr4g0027171 | 44.615 | 130 | 58 | 2 | 57 | 174 | 69 | 196 | 1.40e-29 | 107 |
| Msa0480950 | MtrunA17_Chr2g0320881 | 48.182 | 110 | 56 | 1 | 57 | 165 | 57 | 166 | 2.51e-26 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480950 | AT2G27830.1 | 45.968 | 124 | 58 | 2 | 57 | 172 | 68 | 190 | 5.49e-32 | 114 |
Find 45 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCAGTGTTCTTCAAAAT+TGG | 0.195240 | 3_3:-86657066 | None:intergenic |
| GTTTCTCTGGCTGTGAATTA+TGG | 0.269497 | 3_3:-86656834 | None:intergenic |
| CATTACTTTGGAAAGTGAAT+TGG | 0.299193 | 3_3:-86657113 | None:intergenic |
| CAATGGATTCTTCATTTCCT+TGG | 0.316089 | 3_3:+86657538 | Msa0480950:CDS |
| AAACTAATGACACTGTTCTT+AGG | 0.355610 | 3_3:+86656911 | Msa0480950:CDS |
| GCGGAGAAGTCATGCTTATA+AGG | 0.356705 | 3_3:-86656753 | None:intergenic |
| TGTCTCTAAACAAAACAATA+AGG | 0.368608 | 3_3:+86656703 | Msa0480950:five_prime_UTR |
| ATTACTTTGGAAAGTGAATT+GGG | 0.392489 | 3_3:-86657112 | None:intergenic |
| CACAGTTGAAGATTTGATAA+AGG | 0.392539 | 3_3:+86657008 | Msa0480950:CDS |
| GCTGTGAATTATGGAGTTTA+CGG | 0.413396 | 3_3:-86656825 | None:intergenic |
| AGAATTCAACGGGGTCTTAC+CGG | 0.420392 | 3_3:-86656800 | None:intergenic |
| GTTTACGGCAAGAATTCAAC+GGG | 0.423723 | 3_3:-86656810 | None:intergenic |
| ACATTGCCAGAGGGTTTCTC+TGG | 0.447363 | 3_3:-86656847 | None:intergenic |
| AGACGAGAAGTTAGTGAGCT+TGG | 0.447814 | 3_3:+86657440 | Msa0480950:CDS |
| AGGCATATCACGTCTCCTGC+AGG | 0.475516 | 3_3:+86657591 | Msa0480950:three_prime_UTR |
| GTGACAATCGAAAACAGCTT+GGG | 0.499309 | 3_3:+86656955 | Msa0480950:CDS |
| CTGCATGGTGCATGAAGAAA+CGG | 0.506540 | 3_3:-86657502 | None:intergenic |
| AAGCATGACTTCTCCGCCAC+AGG | 0.512058 | 3_3:+86656759 | Msa0480950:exon |
| AGTTAGTGAGCTTGGAGTCA+AGG | 0.514747 | 3_3:+86657448 | Msa0480950:CDS |
| CTTCTCCGCCACAGGCTCAT+CGG | 0.524598 | 3_3:+86656767 | Msa0480950:CDS |
| ACATATTAGTAAGTAACATT+CGG | 0.532723 | 3_3:+86657666 | Msa0480950:three_prime_UTR |
| GGTGACAATCGAAAACAGCT+TGG | 0.547560 | 3_3:+86656954 | Msa0480950:CDS |
| AATTTCATTACATACTCGAC+AGG | 0.551601 | 3_3:-86657710 | None:intergenic |
| TGCCACATTCTCATTCTGCA+TGG | 0.554134 | 3_3:-86657517 | None:intergenic |
| GTTTGCATCTTCAGCGTCAG+AGG | 0.563732 | 3_3:-86656892 | None:intergenic |
| AATTGCATAAAATTCCCTGC+AGG | 0.579334 | 3_3:-86657606 | None:intergenic |
| CCTCTGGCAATGTTGATCGT+CGG | 0.591836 | 3_3:+86656857 | Msa0480950:CDS |
| TCACAGCCAGAGAAACCCTC+TGG | 0.594528 | 3_3:+86656841 | Msa0480950:CDS |
| TTTCTCCGATGAGCCTGTGG+CGG | 0.602364 | 3_3:-86656772 | None:intergenic |
| GGCATATCACGTCTCCTGCA+GGG | 0.602401 | 3_3:+86657592 | Msa0480950:three_prime_UTR |
| GCCATCAAAACTGCTACTGA+AGG | 0.608756 | 3_3:+86656933 | Msa0480950:CDS |
| TGCATGGTGCATGAAGAAAC+GGG | 0.610698 | 3_3:-86657501 | None:intergenic |
| GCAGAATGAGAATGTGGCAA+TGG | 0.617184 | 3_3:+86657521 | Msa0480950:CDS |
| AGTTTACGGCAAGAATTCAA+CGG | 0.621562 | 3_3:-86656811 | None:intergenic |
| TAATGAAGATCATAACACCT+TGG | 0.638724 | 3_3:-86657087 | None:intergenic |
| AAATTGACTAAAATCATCCA+AGG | 0.645086 | 3_3:-86657555 | None:intergenic |
| CACCATGCAGAATGAGAATG+TGG | 0.646013 | 3_3:+86657515 | Msa0480950:CDS |
| AGTTGAAGATTTGATAAAGG+CGG | 0.653116 | 3_3:+86657011 | Msa0480950:CDS |
| ATTCAACGGGGTCTTACCGG+AGG | 0.655189 | 3_3:-86656797 | None:intergenic |
| CGACGATCAACATTGCCAGA+GGG | 0.655617 | 3_3:-86656856 | None:intergenic |
| TCAGATGTTGATGTTGTCTG+AGG | 0.666940 | 3_3:+86656984 | Msa0480950:CDS |
| TTTACGAGAAGGATAAGAGG+AGG | 0.685585 | 3_3:+86657043 | Msa0480950:CDS |
| CCGACGATCAACATTGCCAG+AGG | 0.706693 | 3_3:-86656857 | None:intergenic |
| ATGGTGCATGAAGAAACGGG+TGG | 0.830690 | 3_3:-86657498 | None:intergenic |
| TTTACGGCAAGAATTCAACG+GGG | 0.837986 | 3_3:-86656809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAAATGATTGTTTTTTTT+AGG | - | chr3_3:86657400-86657419 | None:intergenic | 15.0% |
| !! | CAAGTAAAAATACTTATAAT+GGG | - | chr3_3:86657766-86657785 | None:intergenic | 15.0% |
| !! | TCAAGTAAAAATACTTATAA+TGG | - | chr3_3:86657767-86657786 | None:intergenic | 15.0% |
| !!! | TCAAAATGATTGTTTTTTTT+AGG | - | chr3_3:86657400-86657419 | None:intergenic | 15.0% |
| !! | CAAGTAAAAATACTTATAAT+GGG | - | chr3_3:86657766-86657785 | None:intergenic | 15.0% |
| !! | TCAAGTAAAAATACTTATAA+TGG | - | chr3_3:86657767-86657786 | None:intergenic | 15.0% |
| !!! | TGTAGTTTTAGTACTATTTT+TGG | - | chr3_3:86657329-86657348 | None:intergenic | 20.0% |
| !! | AATAGTACTAAAACTACAAA+AGG | + | chr3_3:86657331-86657350 | Msa0480950:intron | 20.0% |
| !!! | AAAAAACAATCATTTTGAGT+TGG | + | chr3_3:86657402-86657421 | Msa0480950:intron | 20.0% |
| !! | ACATATTAGTAAGTAACATT+CGG | + | chr3_3:86657666-86657685 | Msa0480950:three_prime_UTR | 20.0% |
| !!! | TAAAAATACTTATAATGGGA+TGG | - | chr3_3:86657762-86657781 | None:intergenic | 20.0% |
| !!! | TGTAGTTTTAGTACTATTTT+TGG | - | chr3_3:86657329-86657348 | None:intergenic | 20.0% |
| !! | AATAGTACTAAAACTACAAA+AGG | + | chr3_3:86657331-86657350 | Msa0480950:intron | 20.0% |
| !!! | AAAAAACAATCATTTTGAGT+TGG | + | chr3_3:86657402-86657421 | Msa0480950:intron | 20.0% |
| !! | ACATATTAGTAAGTAACATT+CGG | + | chr3_3:86657666-86657685 | Msa0480950:three_prime_UTR | 20.0% |
| !!! | TAAAAATACTTATAATGGGA+TGG | - | chr3_3:86657762-86657781 | None:intergenic | 20.0% |
| !!! | TTATTGTTTTGTTTAGAGAC+AGG | - | chr3_3:86656704-86656723 | None:intergenic | 25.0% |
| ! | TGTCTCTAAACAAAACAATA+AGG | + | chr3_3:86656703-86656722 | Msa0480950:five_prime_UTR | 25.0% |
| !! | ATTACTTTGGAAAGTGAATT+GGG | - | chr3_3:86657115-86657134 | None:intergenic | 25.0% |
| ! | TTAGTAAGAAGTCATTACTT+TGG | - | chr3_3:86657128-86657147 | None:intergenic | 25.0% |
| !!! | AATGTTCTGTTTTTCATTCA+TGG | + | chr3_3:86657188-86657207 | Msa0480950:intron | 25.0% |
| ! | CTAAAACTACAAAAGGATAA+TGG | + | chr3_3:86657338-86657357 | Msa0480950:intron | 25.0% |
| ! | AAATTGACTAAAATCATCCA+AGG | - | chr3_3:86657558-86657577 | None:intergenic | 25.0% |
| !! | TCAATTTTCTGCTATAAAGT+AGG | + | chr3_3:86657571-86657590 | Msa0480950:exon | 25.0% |
| !!! | TTATTGTTTTGTTTAGAGAC+AGG | - | chr3_3:86656704-86656723 | None:intergenic | 25.0% |
| ! | TGTCTCTAAACAAAACAATA+AGG | + | chr3_3:86656703-86656722 | Msa0480950:five_prime_UTR | 25.0% |
| !! | ATTACTTTGGAAAGTGAATT+GGG | - | chr3_3:86657115-86657134 | None:intergenic | 25.0% |
| ! | TTAGTAAGAAGTCATTACTT+TGG | - | chr3_3:86657128-86657147 | None:intergenic | 25.0% |
| !!! | AATGTTCTGTTTTTCATTCA+TGG | + | chr3_3:86657188-86657207 | Msa0480950:intron | 25.0% |
| ! | CTAAAACTACAAAAGGATAA+TGG | + | chr3_3:86657338-86657357 | Msa0480950:intron | 25.0% |
| ! | AAATTGACTAAAATCATCCA+AGG | - | chr3_3:86657558-86657577 | None:intergenic | 25.0% |
| !! | TCAATTTTCTGCTATAAAGT+AGG | + | chr3_3:86657571-86657590 | Msa0480950:exon | 25.0% |
| AAACTAATGACACTGTTCTT+AGG | + | chr3_3:86656911-86656930 | Msa0480950:CDS | 30.0% | |
| CACAGTTGAAGATTTGATAA+AGG | + | chr3_3:86657008-86657027 | Msa0480950:CDS | 30.0% | |
| AGTTGAAGATTTGATAAAGG+CGG | + | chr3_3:86657011-86657030 | Msa0480950:CDS | 30.0% | |
| TAATGAAGATCATAACACCT+TGG | - | chr3_3:86657090-86657109 | None:intergenic | 30.0% | |
| ! | CATTACTTTGGAAAGTGAAT+TGG | - | chr3_3:86657116-86657135 | None:intergenic | 30.0% |
| AGCTCAAAACATAGAATTAG+GGG | - | chr3_3:86657158-86657177 | None:intergenic | 30.0% | |
| CAGCTCAAAACATAGAATTA+GGG | - | chr3_3:86657159-86657178 | None:intergenic | 30.0% | |
| TCAGCTCAAAACATAGAATT+AGG | - | chr3_3:86657160-86657179 | None:intergenic | 30.0% | |
| AATTTCATTACATACTCGAC+AGG | - | chr3_3:86657713-86657732 | None:intergenic | 30.0% | |
| AAACTAATGACACTGTTCTT+AGG | + | chr3_3:86656911-86656930 | Msa0480950:CDS | 30.0% | |
| CACAGTTGAAGATTTGATAA+AGG | + | chr3_3:86657008-86657027 | Msa0480950:CDS | 30.0% | |
| AGTTGAAGATTTGATAAAGG+CGG | + | chr3_3:86657011-86657030 | Msa0480950:CDS | 30.0% | |
| TAATGAAGATCATAACACCT+TGG | - | chr3_3:86657090-86657109 | None:intergenic | 30.0% | |
| ! | CATTACTTTGGAAAGTGAAT+TGG | - | chr3_3:86657116-86657135 | None:intergenic | 30.0% |
| AGCTCAAAACATAGAATTAG+GGG | - | chr3_3:86657158-86657177 | None:intergenic | 30.0% | |
| CAGCTCAAAACATAGAATTA+GGG | - | chr3_3:86657159-86657178 | None:intergenic | 30.0% | |
| TCAGCTCAAAACATAGAATT+AGG | - | chr3_3:86657160-86657179 | None:intergenic | 30.0% | |
| AATTTCATTACATACTCGAC+AGG | - | chr3_3:86657713-86657732 | None:intergenic | 30.0% | |
| AGTTTACGGCAAGAATTCAA+CGG | - | chr3_3:86656814-86656833 | None:intergenic | 35.0% | |
| GCTGTGAATTATGGAGTTTA+CGG | - | chr3_3:86656828-86656847 | None:intergenic | 35.0% | |
| ! | TGTTTTACGAGAAGGATAAG+AGG | + | chr3_3:86657040-86657059 | Msa0480950:CDS | 35.0% |
| GGATCAGTGTTCTTCAAAAT+TGG | - | chr3_3:86657069-86657088 | None:intergenic | 35.0% | |
| !! | TTTTGAAGAACACTGATCCA+AGG | + | chr3_3:86657070-86657089 | Msa0480950:CDS | 35.0% |
| !! | TCTGTTTTTCATTCATGGAC+TGG | + | chr3_3:86657193-86657212 | Msa0480950:intron | 35.0% |
| !! | CATTCATGGACTGGTTAATT+TGG | + | chr3_3:86657202-86657221 | Msa0480950:intron | 35.0% |
| ! | CAATGGATTCTTCATTTCCT+TGG | + | chr3_3:86657538-86657557 | Msa0480950:CDS | 35.0% |
| AATTGCATAAAATTCCCTGC+AGG | - | chr3_3:86657609-86657628 | None:intergenic | 35.0% | |
| AGTTTACGGCAAGAATTCAA+CGG | - | chr3_3:86656814-86656833 | None:intergenic | 35.0% | |
| GCTGTGAATTATGGAGTTTA+CGG | - | chr3_3:86656828-86656847 | None:intergenic | 35.0% | |
| ! | TGTTTTACGAGAAGGATAAG+AGG | + | chr3_3:86657040-86657059 | Msa0480950:CDS | 35.0% |
| GGATCAGTGTTCTTCAAAAT+TGG | - | chr3_3:86657069-86657088 | None:intergenic | 35.0% | |
| !! | TTTTGAAGAACACTGATCCA+AGG | + | chr3_3:86657070-86657089 | Msa0480950:CDS | 35.0% |
| !! | TCTGTTTTTCATTCATGGAC+TGG | + | chr3_3:86657193-86657212 | Msa0480950:intron | 35.0% |
| !! | CATTCATGGACTGGTTAATT+TGG | + | chr3_3:86657202-86657221 | Msa0480950:intron | 35.0% |
| ! | CAATGGATTCTTCATTTCCT+TGG | + | chr3_3:86657538-86657557 | Msa0480950:CDS | 35.0% |
| AATTGCATAAAATTCCCTGC+AGG | - | chr3_3:86657609-86657628 | None:intergenic | 35.0% | |
| TTTACGGCAAGAATTCAACG+GGG | - | chr3_3:86656812-86656831 | None:intergenic | 40.0% | |
| GTTTACGGCAAGAATTCAAC+GGG | - | chr3_3:86656813-86656832 | None:intergenic | 40.0% | |
| GTTTCTCTGGCTGTGAATTA+TGG | - | chr3_3:86656837-86656856 | None:intergenic | 40.0% | |
| !! | ACCTTCAGTAGCAGTTTTGA+TGG | - | chr3_3:86656937-86656956 | None:intergenic | 40.0% |
| GTGACAATCGAAAACAGCTT+GGG | + | chr3_3:86656955-86656974 | Msa0480950:CDS | 40.0% | |
| TCAGATGTTGATGTTGTCTG+AGG | + | chr3_3:86656984-86657003 | Msa0480950:CDS | 40.0% | |
| TTTACGAGAAGGATAAGAGG+AGG | + | chr3_3:86657043-86657062 | Msa0480950:CDS | 40.0% | |
| !!! | CAATCATTTTGAGTTGGTGC+AGG | + | chr3_3:86657408-86657427 | Msa0480950:intron | 40.0% |
| TTTACGGCAAGAATTCAACG+GGG | - | chr3_3:86656812-86656831 | None:intergenic | 40.0% | |
| GTTTACGGCAAGAATTCAAC+GGG | - | chr3_3:86656813-86656832 | None:intergenic | 40.0% | |
| GTTTCTCTGGCTGTGAATTA+TGG | - | chr3_3:86656837-86656856 | None:intergenic | 40.0% | |
| !! | ACCTTCAGTAGCAGTTTTGA+TGG | - | chr3_3:86656937-86656956 | None:intergenic | 40.0% |
| GTGACAATCGAAAACAGCTT+GGG | + | chr3_3:86656955-86656974 | Msa0480950:CDS | 40.0% | |
| TCAGATGTTGATGTTGTCTG+AGG | + | chr3_3:86656984-86657003 | Msa0480950:CDS | 40.0% | |
| TTTACGAGAAGGATAAGAGG+AGG | + | chr3_3:86657043-86657062 | Msa0480950:CDS | 40.0% | |
| !!! | CAATCATTTTGAGTTGGTGC+AGG | + | chr3_3:86657408-86657427 | Msa0480950:intron | 40.0% |
| GCGGAGAAGTCATGCTTATA+AGG | - | chr3_3:86656756-86656775 | None:intergenic | 45.0% | |
| AGAATTCAACGGGGTCTTAC+CGG | - | chr3_3:86656803-86656822 | None:intergenic | 45.0% | |
| GCCATCAAAACTGCTACTGA+AGG | + | chr3_3:86656933-86656952 | Msa0480950:CDS | 45.0% | |
| GGTGACAATCGAAAACAGCT+TGG | + | chr3_3:86656954-86656973 | Msa0480950:CDS | 45.0% | |
| ! | GGCGTTAGTGTTTTACGAGA+AGG | + | chr3_3:86657032-86657051 | Msa0480950:CDS | 45.0% |
| AGACGAGAAGTTAGTGAGCT+TGG | + | chr3_3:86657440-86657459 | Msa0480950:CDS | 45.0% | |
| AGTTAGTGAGCTTGGAGTCA+AGG | + | chr3_3:86657448-86657467 | Msa0480950:CDS | 45.0% | |
| TGCATGGTGCATGAAGAAAC+GGG | - | chr3_3:86657504-86657523 | None:intergenic | 45.0% | |
| CTGCATGGTGCATGAAGAAA+CGG | - | chr3_3:86657505-86657524 | None:intergenic | 45.0% | |
| CACCATGCAGAATGAGAATG+TGG | + | chr3_3:86657515-86657534 | Msa0480950:CDS | 45.0% | |
| TGCCACATTCTCATTCTGCA+TGG | - | chr3_3:86657520-86657539 | None:intergenic | 45.0% | |
| GCAGAATGAGAATGTGGCAA+TGG | + | chr3_3:86657521-86657540 | Msa0480950:CDS | 45.0% | |
| GCGGAGAAGTCATGCTTATA+AGG | - | chr3_3:86656756-86656775 | None:intergenic | 45.0% | |
| AGAATTCAACGGGGTCTTAC+CGG | - | chr3_3:86656803-86656822 | None:intergenic | 45.0% | |
| GCCATCAAAACTGCTACTGA+AGG | + | chr3_3:86656933-86656952 | Msa0480950:CDS | 45.0% | |
| GGTGACAATCGAAAACAGCT+TGG | + | chr3_3:86656954-86656973 | Msa0480950:CDS | 45.0% | |
| ! | GGCGTTAGTGTTTTACGAGA+AGG | + | chr3_3:86657032-86657051 | Msa0480950:CDS | 45.0% |
| AGACGAGAAGTTAGTGAGCT+TGG | + | chr3_3:86657440-86657459 | Msa0480950:CDS | 45.0% | |
| AGTTAGTGAGCTTGGAGTCA+AGG | + | chr3_3:86657448-86657467 | Msa0480950:CDS | 45.0% | |
| TGCATGGTGCATGAAGAAAC+GGG | - | chr3_3:86657504-86657523 | None:intergenic | 45.0% | |
| CTGCATGGTGCATGAAGAAA+CGG | - | chr3_3:86657505-86657524 | None:intergenic | 45.0% | |
| CACCATGCAGAATGAGAATG+TGG | + | chr3_3:86657515-86657534 | Msa0480950:CDS | 45.0% | |
| TGCCACATTCTCATTCTGCA+TGG | - | chr3_3:86657520-86657539 | None:intergenic | 45.0% | |
| GCAGAATGAGAATGTGGCAA+TGG | + | chr3_3:86657521-86657540 | Msa0480950:CDS | 45.0% | |
| ! | GTTTTTCTCCGATGAGCCTG+TGG | - | chr3_3:86656778-86656797 | None:intergenic | 50.0% |
| GCTCATCGGAGAAAAACCTC+CGG | + | chr3_3:86656781-86656800 | Msa0480950:CDS | 50.0% | |
| ACATTGCCAGAGGGTTTCTC+TGG | - | chr3_3:86656850-86656869 | None:intergenic | 50.0% | |
| CGACGATCAACATTGCCAGA+GGG | - | chr3_3:86656859-86656878 | None:intergenic | 50.0% | |
| CCTCTGGCAATGTTGATCGT+CGG | + | chr3_3:86656857-86656876 | Msa0480950:CDS | 50.0% | |
| GTTTGCATCTTCAGCGTCAG+AGG | - | chr3_3:86656895-86656914 | None:intergenic | 50.0% | |
| ATGGTGCATGAAGAAACGGG+TGG | - | chr3_3:86657501-86657520 | None:intergenic | 50.0% | |
| ! | GTTTTTCTCCGATGAGCCTG+TGG | - | chr3_3:86656778-86656797 | None:intergenic | 50.0% |
| GCTCATCGGAGAAAAACCTC+CGG | + | chr3_3:86656781-86656800 | Msa0480950:CDS | 50.0% | |
| ACATTGCCAGAGGGTTTCTC+TGG | - | chr3_3:86656850-86656869 | None:intergenic | 50.0% | |
| CGACGATCAACATTGCCAGA+GGG | - | chr3_3:86656859-86656878 | None:intergenic | 50.0% | |
| CCTCTGGCAATGTTGATCGT+CGG | + | chr3_3:86656857-86656876 | Msa0480950:CDS | 50.0% | |
| GTTTGCATCTTCAGCGTCAG+AGG | - | chr3_3:86656895-86656914 | None:intergenic | 50.0% | |
| ATGGTGCATGAAGAAACGGG+TGG | - | chr3_3:86657501-86657520 | None:intergenic | 50.0% | |
| AAGCATGACTTCTCCGCCAC+AGG | + | chr3_3:86656759-86656778 | Msa0480950:exon | 55.0% | |
| TTTCTCCGATGAGCCTGTGG+CGG | - | chr3_3:86656775-86656794 | None:intergenic | 55.0% | |
| ATTCAACGGGGTCTTACCGG+AGG | - | chr3_3:86656800-86656819 | None:intergenic | 55.0% | |
| TCACAGCCAGAGAAACCCTC+TGG | + | chr3_3:86656841-86656860 | Msa0480950:CDS | 55.0% | |
| CCGACGATCAACATTGCCAG+AGG | - | chr3_3:86656860-86656879 | None:intergenic | 55.0% | |
| AGGCATATCACGTCTCCTGC+AGG | + | chr3_3:86657591-86657610 | Msa0480950:three_prime_UTR | 55.0% | |
| GGCATATCACGTCTCCTGCA+GGG | + | chr3_3:86657592-86657611 | Msa0480950:three_prime_UTR | 55.0% | |
| AAGCATGACTTCTCCGCCAC+AGG | + | chr3_3:86656759-86656778 | Msa0480950:exon | 55.0% | |
| TTTCTCCGATGAGCCTGTGG+CGG | - | chr3_3:86656775-86656794 | None:intergenic | 55.0% | |
| ATTCAACGGGGTCTTACCGG+AGG | - | chr3_3:86656800-86656819 | None:intergenic | 55.0% | |
| TCACAGCCAGAGAAACCCTC+TGG | + | chr3_3:86656841-86656860 | Msa0480950:CDS | 55.0% | |
| CCGACGATCAACATTGCCAG+AGG | - | chr3_3:86656860-86656879 | None:intergenic | 55.0% | |
| AGGCATATCACGTCTCCTGC+AGG | + | chr3_3:86657591-86657610 | Msa0480950:three_prime_UTR | 55.0% | |
| GGCATATCACGTCTCCTGCA+GGG | + | chr3_3:86657592-86657611 | Msa0480950:three_prime_UTR | 55.0% | |
| CTTCTCCGCCACAGGCTCAT+CGG | + | chr3_3:86656767-86656786 | Msa0480950:CDS | 60.0% | |
| CTTCTCCGCCACAGGCTCAT+CGG | + | chr3_3:86656767-86656786 | Msa0480950:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 86656679 | 86657926 | 86656679 | ID=Msa0480950;Name=Msa0480950 |
| chr3_3 | mRNA | 86656679 | 86657926 | 86656679 | ID=Msa0480950-mRNA-1;Parent=Msa0480950;Name=Msa0480950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=84|1|1|1|0|0.5|2|339|174 |
| chr3_3 | exon | 86656679 | 86657129 | 86656679 | ID=Msa0480950-mRNA-1:exon:25000;Parent=Msa0480950-mRNA-1 |
| chr3_3 | exon | 86657430 | 86657926 | 86657430 | ID=Msa0480950-mRNA-1:exon:25001;Parent=Msa0480950-mRNA-1 |
| chr3_3 | five_prime_UTR | 86656679 | 86656762 | 86656679 | ID=Msa0480950-mRNA-1:five_prime_utr;Parent=Msa0480950-mRNA-1 |
| chr3_3 | CDS | 86656763 | 86657129 | 86656763 | ID=Msa0480950-mRNA-1:cds;Parent=Msa0480950-mRNA-1 |
| chr3_3 | CDS | 86657430 | 86657587 | 86657430 | ID=Msa0480950-mRNA-1:cds;Parent=Msa0480950-mRNA-1 |
| chr3_3 | three_prime_UTR | 86657588 | 86657926 | 86657588 | ID=Msa0480950-mRNA-1:three_prime_utr;Parent=Msa0480950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
