Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369700 | XP_013470277.1 | 93.243 | 296 | 20 | 0 | 1 | 296 | 1 | 296 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369700 | A0A072W228 | 93.243 | 296 | 20 | 0 | 1 | 296 | 1 | 296 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa1369700 | 0.808983 | 2.368692e-50 | -8.615850e-47 |
| Msa0038350 | Msa1369700 | -0.815374 | 9.554205e-52 | -8.615850e-47 |
| Msa0044100 | Msa1369700 | 0.927848 | 6.623246e-92 | -8.615850e-47 |
| Msa0044710 | Msa1369700 | 0.802298 | 5.995254e-49 | -8.615850e-47 |
| Msa0045650 | Msa1369700 | 0.824646 | 7.211976e-54 | -8.615850e-47 |
| Msa0075310 | Msa1369700 | 0.806958 | 6.389399e-50 | -8.615850e-47 |
| Msa0095540 | Msa1369700 | 0.800722 | 1.261045e-48 | -8.615850e-47 |
| Msa1369700 | Msa1371830 | 0.819413 | 1.176991e-52 | -8.615850e-47 |
| Msa1369700 | Msa1376340 | 0.823013 | 1.740800e-53 | -8.615850e-47 |
| Msa1369700 | Msa1395870 | 0.828573 | 8.340429e-55 | -8.615850e-47 |
| Msa1369700 | Msa1399560 | 0.867542 | 1.267829e-65 | -8.615850e-47 |
| Msa1369700 | Msa1411070 | 0.803187 | 3.928693e-49 | -8.615850e-47 |
| Msa1369700 | Msa1423450 | 0.816038 | 6.795624e-52 | -8.615850e-47 |
| Msa1369700 | Msa1431000 | 0.813755 | 2.179757e-51 | -8.615850e-47 |
| Msa1369700 | Msa1437190 | 0.944383 | 2.158130e-103 | -8.615850e-47 |
| Msa1369700 | Msa1443840 | 0.848395 | 6.299786e-60 | -8.615850e-47 |
| Msa1369700 | Msa1452060 | 0.867059 | 1.809248e-65 | -8.615850e-47 |
| Msa1369700 | Msa1460380 | 0.982337 | 7.840418e-155 | -8.615850e-47 |
| Msa1369700 | Msa1460890 | 0.828269 | 9.872676e-55 | -8.615850e-47 |
| Msa1369700 | Msa1464560 | 0.811233 | 7.756225e-51 | -8.615850e-47 |
| Msa0611380 | Msa1369700 | 0.878535 | 2.596313e-69 | -8.615850e-47 |
| Msa0618180 | Msa1369700 | 0.842017 | 3.342563e-58 | -8.615850e-47 |
| Msa0618220 | Msa1369700 | 0.818621 | 1.781101e-52 | -8.615850e-47 |
| Msa0619990 | Msa1369700 | 0.800347 | 1.504352e-48 | -8.615850e-47 |
| Msa0621890 | Msa1369700 | 0.817129 | 3.869907e-52 | -8.615850e-47 |
| Msa0628640 | Msa1369700 | 0.881609 | 2.081697e-70 | -8.615850e-47 |
| Msa0631120 | Msa1369700 | 0.849359 | 3.400632e-60 | -8.615850e-47 |
| Msa0653020 | Msa1369700 | 0.824570 | 7.512584e-54 | -8.615850e-47 |
| Msa0666030 | Msa1369700 | 0.843659 | 1.222791e-58 | -8.615850e-47 |
| Msa0669340 | Msa1369700 | 0.859721 | 3.399022e-63 | -8.615850e-47 |
| Msa0701770 | Msa1369700 | 0.808716 | 2.701428e-50 | -8.615850e-47 |
| Msa0701970 | Msa1369700 | 0.846624 | 1.932191e-59 | -8.615850e-47 |
| Msa0716450 | Msa1369700 | 0.877106 | 8.198854e-69 | -8.615850e-47 |
| Msa0717260 | Msa1369700 | 0.883705 | 3.577876e-71 | -8.615850e-47 |
| Msa0725480 | Msa1369700 | -0.804257 | 2.356256e-49 | -8.615850e-47 |
| Msa0734230 | Msa1369700 | 0.838504 | 2.764435e-57 | -8.615850e-47 |
| Msa0758320 | Msa1369700 | 0.873594 | 1.303343e-67 | -8.615850e-47 |
| Msa0766100 | Msa1369700 | -0.822991 | 1.761020e-53 | -8.615850e-47 |
| Msa0773610 | Msa1369700 | 0.805472 | 1.313084e-49 | -8.615850e-47 |
| Msa0775440 | Msa1369700 | 0.838663 | 2.515707e-57 | -8.615850e-47 |
| Msa0799030 | Msa1369700 | 0.864117 | 1.531790e-64 | -8.615850e-47 |
| Msa0799700 | Msa1369700 | 0.828256 | 9.945172e-55 | -8.615850e-47 |
| Msa0812820 | Msa1369700 | 0.850650 | 1.480833e-60 | -8.615850e-47 |
| Msa0820670 | Msa1369700 | 0.812766 | 3.594509e-51 | -8.615850e-47 |
| Msa0828570 | Msa1369700 | 0.801921 | 7.166207e-49 | -8.615850e-47 |
| Msa0837440 | Msa1369700 | 0.854605 | 1.101441e-61 | -8.615850e-47 |
| Msa0837980 | Msa1369700 | 0.874923 | 4.618628e-68 | -8.615850e-47 |
| Msa0837990 | Msa1369700 | 0.811325 | 7.409357e-51 | -8.615850e-47 |
| Msa0141100 | Msa1369700 | 0.851323 | 9.564259e-61 | -8.615850e-47 |
| Msa0159750 | Msa1369700 | 0.805217 | 1.484966e-49 | -8.615850e-47 |
| Msa0164660 | Msa1369700 | 0.809003 | 2.345821e-50 | -8.615850e-47 |
| Msa0183750 | Msa1369700 | 0.956073 | 6.955816e-114 | -8.615850e-47 |
| Msa0185480 | Msa1369700 | 0.809075 | 2.263804e-50 | -8.615850e-47 |
| Msa0185640 | Msa1369700 | -0.825618 | 4.248416e-54 | -8.615850e-47 |
| Msa0191040 | Msa1369700 | 0.828095 | 1.087458e-54 | -8.615850e-47 |
| Msa0208520 | Msa1369700 | 0.804826 | 1.792933e-49 | -8.615850e-47 |
| Msa0220300 | Msa1369700 | 0.826529 | 2.581218e-54 | -8.615850e-47 |
| Msa0233340 | Msa1369700 | 0.828051 | 1.114316e-54 | -8.615850e-47 |
| Msa1227950 | Msa1369700 | 0.821679 | 3.551643e-53 | -8.615850e-47 |
| Msa1227970 | Msa1369700 | 0.824314 | 8.631340e-54 | -8.615850e-47 |
| Msa1255280 | Msa1369700 | 0.820180 | 7.861461e-53 | -8.615850e-47 |
| Msa1256540 | Msa1369700 | -0.822240 | 2.633701e-53 | -8.615850e-47 |
| Msa1258050 | Msa1369700 | 0.819920 | 9.012252e-53 | -8.615850e-47 |
| Msa1265960 | Msa1369700 | 0.815113 | 1.091576e-51 | -8.615850e-47 |
| Msa1266960 | Msa1369700 | 0.866817 | 2.160751e-65 | -8.615850e-47 |
| Msa1296960 | Msa1369700 | -0.829752 | 4.318212e-55 | -8.615850e-47 |
| Msa1308130 | Msa1369700 | 0.816615 | 5.048433e-52 | -8.615850e-47 |
| Msa1339940 | Msa1369700 | 0.867636 | 1.182792e-65 | -8.615850e-47 |
| Msa1342430 | Msa1369700 | 0.828076 | 1.099251e-54 | -8.615850e-47 |
| Msa1343820 | Msa1369700 | 0.808275 | 3.355814e-50 | -8.615850e-47 |
| Msa0374850 | Msa1369700 | 0.845787 | 3.266240e-59 | -8.615850e-47 |
| Msa0375090 | Msa1369700 | 0.844358 | 7.944574e-59 | -8.615850e-47 |
| Msa0385670 | Msa1369700 | 0.818888 | 1.549334e-52 | -8.615850e-47 |
| Msa0418000 | Msa1369700 | 0.824756 | 6.792291e-54 | -8.615850e-47 |
| Msa0423360 | Msa1369700 | -0.815904 | 7.280195e-52 | -8.615850e-47 |
| Msa0435670 | Msa1369700 | 0.812848 | 3.449041e-51 | -8.615850e-47 |
| Msa0470340 | Msa1369700 | 0.842545 | 2.422621e-58 | -8.615850e-47 |
| Msa0470860 | Msa1369700 | 0.845352 | 4.284068e-59 | -8.615850e-47 |
| Msa0479700 | Msa1369700 | 0.800313 | 1.528194e-48 | -8.615850e-47 |
| Msa0480950 | Msa1369700 | 0.834847 | 2.365234e-56 | -8.615850e-47 |
| Msa0981010 | Msa1369700 | 0.845936 | 2.975869e-59 | -8.615850e-47 |
| Msa0988480 | Msa1369700 | 0.800872 | 1.175620e-48 | -8.615850e-47 |
| Msa1002620 | Msa1369700 | 0.864857 | 8.991031e-65 | -8.615850e-47 |
| Msa1007610 | Msa1369700 | -0.822157 | 2.752771e-53 | -8.615850e-47 |
| Msa1020930 | Msa1369700 | -0.803230 | 3.850361e-49 | -8.615850e-47 |
| Msa1055280 | Msa1369700 | 0.804803 | 1.813111e-49 | -8.615850e-47 |
| Msa1098560 | Msa1369700 | 0.801293 | 9.640561e-49 | -8.615850e-47 |
| Msa0251240 | Msa1369700 | 0.800671 | 1.292184e-48 | -8.615850e-47 |
| Msa0258670 | Msa1369700 | -0.812462 | 4.189012e-51 | -8.615850e-47 |
| Msa0301180 | Msa1369700 | 0.803941 | 2.741398e-49 | -8.615850e-47 |
| Msa0311690 | Msa1369700 | 0.822037 | 2.934902e-53 | -8.615850e-47 |
| Msa0329710 | Msa1369700 | 0.801513 | 8.689169e-49 | -8.615850e-47 |
| Msa0342340 | Msa1369700 | -0.814719 | 1.334925e-51 | -8.615850e-47 |
| Msa1113850 | Msa1369700 | 0.804158 | 2.471084e-49 | -8.615850e-47 |
| Msa1133660 | Msa1369700 | 0.810078 | 1.378123e-50 | -8.615850e-47 |
| Msa1160400 | Msa1369700 | 0.805197 | 1.499795e-49 | -8.615850e-47 |
| Msa1164800 | Msa1369700 | -0.801067 | 1.072581e-48 | -8.615850e-47 |
| Msa1172590 | Msa1369700 | 0.809195 | 2.133733e-50 | -8.615850e-47 |
| Msa1190120 | Msa1369700 | 0.866575 | 2.580040e-65 | -8.615850e-47 |
| Msa1203000 | Msa1369700 | 0.832425 | 9.522529e-56 | -8.615850e-47 |
| Msa1204980 | Msa1369700 | -0.816587 | 5.121593e-52 | -8.615850e-47 |
| Msa1205010 | Msa1369700 | -0.818388 | 2.012076e-52 | -8.615850e-47 |
| Msa1207870 | Msa1369700 | 0.802547 | 5.327595e-49 | -8.615850e-47 |
| Msa1211550 | Msa1369700 | 0.849679 | 2.770002e-60 | -8.615850e-47 |
| Msa1217940 | Msa1369700 | 0.818197 | 2.222190e-52 | -8.615850e-47 |
| Msa1219260 | Msa1369700 | 0.863929 | 1.752649e-64 | -8.615850e-47 |
| Msa1220230 | Msa1369700 | 0.804557 | 2.040094e-49 | -8.615850e-47 |
| Msa1223460 | Msa1369700 | 0.819183 | 1.327572e-52 | -8.615850e-47 |
| Msa0517340 | Msa1369700 | 0.803840 | 2.876350e-49 | -8.615850e-47 |
| Msa0526640 | Msa1369700 | -0.807538 | 4.814366e-50 | -8.615850e-47 |
| Msa0531430 | Msa1369700 | 0.880615 | 4.744883e-70 | -8.615850e-47 |
| Msa0534570 | Msa1369700 | 0.827533 | 1.484544e-54 | -8.615850e-47 |
| Msa0534590 | Msa1369700 | 0.851983 | 6.220382e-61 | -8.615850e-47 |
| Msa0557680 | Msa1369700 | 0.828356 | 9.406765e-55 | -8.615850e-47 |
| Msa0565600 | Msa1369700 | 0.870307 | 1.611013e-66 | -8.615850e-47 |
| Msa0590800 | Msa1369700 | 0.836567 | 8.674361e-57 | -8.615850e-47 |
| Msa0845590 | Msa1369700 | -0.830383 | 3.028412e-55 | -8.615850e-47 |
| Msa0853320 | Msa1369700 | 0.836691 | 8.067411e-57 | -8.615850e-47 |
| Msa0903730 | Msa1369700 | 0.806213 | 9.174605e-50 | -8.615850e-47 |
| Msa0944770 | Msa1369700 | 0.812730 | 3.659302e-51 | -8.615850e-47 |
| Msa0951710 | Msa1369700 | 0.805762 | 1.141655e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369700 | MtrunA17_Chr1g0210721 | 93.243 | 296 | 20 | 0 | 1 | 296 | 1 | 296 | 0.0 | 574 |
| Msa1369700 | MtrunA17_Chr1g0210731 | 64.610 | 308 | 95 | 4 | 4 | 300 | 1 | 305 | 1.87e-137 | 390 |
| Msa1369700 | MtrunA17_Chr2g0287431 | 45.608 | 296 | 149 | 3 | 1 | 288 | 1 | 292 | 7.71e-83 | 252 |
| Msa1369700 | MtrunA17_Chr4g0033971 | 28.794 | 257 | 160 | 6 | 6 | 248 | 6 | 253 | 1.31e-29 | 114 |
| Msa1369700 | MtrunA17_Chr5g0409571 | 26.545 | 275 | 185 | 6 | 1 | 266 | 1 | 267 | 1.03e-21 | 92.4 |
| Msa1369700 | MtrunA17_Chr8g0369411 | 25.564 | 266 | 179 | 7 | 6 | 261 | 6 | 262 | 4.39e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369700 | AT1G55230.1 | 48.658 | 298 | 135 | 7 | 1 | 287 | 1 | 291 | 3.15e-93 | 278 |
| Msa1369700 | AT1G55240.1 | 45.517 | 290 | 147 | 4 | 6 | 287 | 6 | 292 | 2.50e-86 | 261 |
| Msa1369700 | AT5G19870.1 | 43.214 | 280 | 147 | 2 | 1 | 272 | 1 | 276 | 2.39e-79 | 242 |
| Msa1369700 | AT1G49470.1 | 28.904 | 301 | 184 | 7 | 6 | 287 | 6 | 295 | 1.21e-26 | 106 |
| Msa1369700 | AT1G32127.2 | 29.224 | 219 | 142 | 4 | 1 | 210 | 1 | 215 | 4.32e-20 | 88.2 |
| Msa1369700 | AT1G32127.1 | 29.224 | 219 | 142 | 4 | 1 | 210 | 1 | 215 | 4.32e-20 | 88.2 |
Find 57 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTATGGCTATAATTTA+TGG | 0.111898 | tig0018891:+25431 | Msa1369700:CDS |
| CTCTAAGTATCTACTTATTT+TGG | 0.153608 | tig0018891:-24805 | None:intergenic |
| CCAACACTTCATTACCCTTT+TGG | 0.220978 | tig0018891:+24775 | Msa1369700:CDS |
| CAATTCAGCTGGTTCTTTAT+TGG | 0.239215 | tig0018891:+25380 | Msa1369700:CDS |
| GGTTTAGTGCTTTCTATATC+TGG | 0.242800 | tig0018891:+25254 | Msa1369700:CDS |
| TCAACCCAAAGGTTGCTTCT+TGG | 0.301483 | tig0018891:+25280 | Msa1369700:CDS |
| GGCTGAGAAGATTGCGCAAC+TGG | 0.317645 | tig0018891:-24844 | None:intergenic |
| AGGTTTGTTCATTATGTTCA+TGG | 0.326708 | tig0018891:+25232 | Msa1369700:CDS |
| TGTGTTCAACTTGGTGGATA+TGG | 0.336618 | tig0018891:-24911 | None:intergenic |
| GTTACAACCCTTATGGGAAT+TGG | 0.339254 | tig0018891:+25155 | Msa1369700:CDS |
| AGTGTCTTTCTACTTGATTA+TGG | 0.354291 | tig0018891:+25418 | Msa1369700:CDS |
| TTGCTTGCAGCTATAGCATT+TGG | 0.358644 | tig0018891:+25035 | Msa1369700:CDS |
| TGGAAAACCAATTCCCATAA+GGG | 0.368114 | tig0018891:-25162 | None:intergenic |
| ATATTCCAAGAAGCAACCTT+TGG | 0.390404 | tig0018891:-25285 | None:intergenic |
| TTGGAAAACCAATTCCCATA+AGG | 0.405774 | tig0018891:-25163 | None:intergenic |
| AAGGAGATCAACTTATGATT+AGG | 0.413259 | tig0018891:+25309 | Msa1369700:CDS |
| AGAAGTCACATGGGGATAGA+AGG | 0.425426 | tig0018891:+25089 | Msa1369700:CDS |
| CCAGATGATTTCTACTAGAA+TGG | 0.432826 | tig0018891:+25541 | Msa1369700:CDS |
| TGGTGAATCTTCAATTCAGC+TGG | 0.442803 | tig0018891:+25369 | Msa1369700:CDS |
| GTGGATATGGTTGGTAGGAA+TGG | 0.447015 | tig0018891:-24898 | None:intergenic |
| CCATTCTAGTAGAAATCATC+TGG | 0.450188 | tig0018891:-25541 | None:intergenic |
| GGTTTGTTCATTATGTTCAT+GGG | 0.458171 | tig0018891:+25233 | Msa1369700:CDS |
| TATTCCAAGAAGCAACCTTT+GGG | 0.461299 | tig0018891:-25284 | None:intergenic |
| TATGCATCGTGCTGTTTCAT+TGG | 0.468772 | tig0018891:+25349 | Msa1369700:CDS |
| GATTAGGTGCAATGATGAAA+AGG | 0.487514 | tig0018891:+25325 | Msa1369700:CDS |
| AGGCACTATGATTGCATTGG+AGG | 0.487729 | tig0018891:+24668 | None:intergenic |
| GGTTGCTTCTTGGAATATGA+AGG | 0.488311 | tig0018891:+25290 | Msa1369700:CDS |
| GGAGTTTGAGGTAGTTGAAG+AGG | 0.502910 | tig0018891:-24737 | None:intergenic |
| AACAAACAAAGTGGAGTTTG+AGG | 0.514586 | tig0018891:-24749 | None:intergenic |
| TGAACATAATGAACAAACCT+TGG | 0.523714 | tig0018891:-25229 | None:intergenic |
| TGTGACTTCTTGAATGAAGA+TGG | 0.525692 | tig0018891:-25076 | None:intergenic |
| ATCTTCGAAGCTTCTAGTAA+TGG | 0.527933 | tig0018891:+24873 | Msa1369700:CDS |
| CCAAAAGGGTAATGAAGTGT+TGG | 0.529229 | tig0018891:-24775 | None:intergenic |
| TGGAAGTGTGTTCAACTTGG+TGG | 0.532303 | tig0018891:-24917 | None:intergenic |
| TCTGTTAGCATGATCTTCCA+AGG | 0.532759 | tig0018891:+25212 | Msa1369700:CDS |
| GGAGTGCGATTCACTGATGA+AGG | 0.536386 | tig0018891:+25463 | Msa1369700:CDS |
| TCTAGGCACTATGATTGCAT+TGG | 0.541099 | tig0018891:+24665 | None:intergenic |
| TTGGAGGGACATATATGCAT+GGG | 0.547892 | tig0018891:+24684 | Msa1369700:CDS |
| GGCACTATGATTGCATTGGA+GGG | 0.559391 | tig0018891:+24669 | None:intergenic |
| CTTAGAGCTTTATTTCATTG+TGG | 0.561652 | tig0018891:+24821 | Msa1369700:CDS |
| TTCAACTTGGTGGATATGGT+TGG | 0.563681 | tig0018891:-24907 | None:intergenic |
| TATGAAGAAAGACACAGTAA+TGG | 0.570471 | tig0018891:-24937 | None:intergenic |
| AAGGAGGAACAGTACGGTGA+AGG | 0.576386 | tig0018891:+25482 | Msa1369700:CDS |
| TCTATCAAGAATTATGGCAA+AGG | 0.580741 | tig0018891:-24967 | None:intergenic |
| ACTTGGTGGATATGGTTGGT+AGG | 0.580887 | tig0018891:-24903 | None:intergenic |
| GAACAGTACGGTGAAGGCGA+TGG | 0.598192 | tig0018891:+25488 | Msa1369700:CDS |
| ATATCTGGTTATCAACCCAA+AGG | 0.602519 | tig0018891:+25269 | Msa1369700:CDS |
| TCTTCATTCAAGAAGTCACA+TGG | 0.616300 | tig0018891:+25079 | Msa1369700:CDS |
| ATTGGAGGGACATATATGCA+TGG | 0.620076 | tig0018891:+24683 | Msa1369700:CDS |
| TAATGGAAGTGTGTTCAACT+TGG | 0.624797 | tig0018891:-24920 | None:intergenic |
| TGTTGGAAGAACAAACAAAG+TGG | 0.643408 | tig0018891:-24758 | None:intergenic |
| CTTCATTCAAGAAGTCACAT+GGG | 0.655694 | tig0018891:+25080 | Msa1369700:CDS |
| TGGAGGGACATATATGCATG+GGG | 0.665069 | tig0018891:+24685 | Msa1369700:CDS |
| GTGCGATTCACTGATGAAGG+AGG | 0.666959 | tig0018891:+25466 | Msa1369700:CDS |
| AGAAGCTTCGAAGATTTCTG+CGG | 0.668279 | tig0018891:-24865 | None:intergenic |
| CTGATGAAGGAGGAACAGTA+CGG | 0.675878 | tig0018891:+25476 | Msa1369700:CDS |
| TTCATTCAAGAAGTCACATG+GGG | 0.680400 | tig0018891:+25081 | Msa1369700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTATCAAGAATTA+TGG | - | tig0018891:24976-24995 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTATCAAGAATTA+TGG | - | tig0018891:24976-24995 | None:intergenic | 15.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | + | tig0018891:25431-25450 | Msa1369700:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | + | tig0018891:25442-25461 | Msa1369700:CDS | 20.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | + | tig0018891:25431-25450 | Msa1369700:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | + | tig0018891:25442-25461 | Msa1369700:CDS | 20.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | - | tig0018891:24804-24823 | None:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | - | tig0018891:24805-24824 | None:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | - | tig0018891:24808-24827 | None:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCTT+TGG | - | tig0018891:25185-25204 | None:intergenic | 25.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | - | tig0018891:24804-24823 | None:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | - | tig0018891:24805-24824 | None:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | - | tig0018891:24808-24827 | None:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCTT+TGG | - | tig0018891:25185-25204 | None:intergenic | 25.0% |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | + | tig0018891:24712-24731 | Msa1369700:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | + | tig0018891:24821-24840 | Msa1369700:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | - | tig0018891:24940-24959 | None:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | - | tig0018891:24970-24989 | None:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | + | tig0018891:25128-25147 | Msa1369700:CDS | 30.0% |
| ! | TGGTTTTCCAAAGAGTTTTT+TGG | + | tig0018891:25175-25194 | Msa1369700:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | - | tig0018891:25232-25251 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | + | tig0018891:25232-25251 | Msa1369700:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | + | tig0018891:25233-25252 | Msa1369700:CDS | 30.0% |
| AAGGAGATCAACTTATGATT+AGG | + | tig0018891:25309-25328 | Msa1369700:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | + | tig0018891:25418-25437 | Msa1369700:CDS | 30.0% | |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | + | tig0018891:24712-24731 | Msa1369700:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | + | tig0018891:24821-24840 | Msa1369700:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | - | tig0018891:24940-24959 | None:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | - | tig0018891:24970-24989 | None:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | + | tig0018891:25128-25147 | Msa1369700:CDS | 30.0% |
| ! | TGGTTTTCCAAAGAGTTTTT+TGG | + | tig0018891:25175-25194 | Msa1369700:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | - | tig0018891:25232-25251 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | + | tig0018891:25232-25251 | Msa1369700:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | + | tig0018891:25233-25252 | Msa1369700:CDS | 30.0% |
| AAGGAGATCAACTTATGATT+AGG | + | tig0018891:25309-25328 | Msa1369700:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | + | tig0018891:25418-25437 | Msa1369700:CDS | 30.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | + | tig0018891:24705-24724 | Msa1369700:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | - | tig0018891:24752-24771 | None:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | - | tig0018891:24761-24780 | None:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | - | tig0018891:24792-24811 | None:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | - | tig0018891:24793-24812 | None:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | + | tig0018891:24873-24892 | Msa1369700:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | - | tig0018891:24923-24942 | None:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | - | tig0018891:25079-25098 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | + | tig0018891:25079-25098 | Msa1369700:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | + | tig0018891:25080-25099 | Msa1369700:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | + | tig0018891:25081-25100 | Msa1369700:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | + | tig0018891:25148-25167 | Msa1369700:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | + | tig0018891:25149-25168 | Msa1369700:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | - | tig0018891:25165-25184 | None:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | - | tig0018891:25166-25185 | None:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | + | tig0018891:25254-25273 | Msa1369700:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | + | tig0018891:25269-25288 | Msa1369700:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | - | tig0018891:25287-25306 | None:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | - | tig0018891:25288-25307 | None:intergenic | 35.0% | |
| GATTAGGTGCAATGATGAAA+AGG | + | tig0018891:25325-25344 | Msa1369700:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | + | tig0018891:25380-25399 | Msa1369700:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | - | tig0018891:25544-25563 | None:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | + | tig0018891:25541-25560 | Msa1369700:CDS | 35.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | + | tig0018891:24705-24724 | Msa1369700:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | - | tig0018891:24752-24771 | None:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | - | tig0018891:24761-24780 | None:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | - | tig0018891:24792-24811 | None:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | - | tig0018891:24793-24812 | None:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | + | tig0018891:24873-24892 | Msa1369700:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | - | tig0018891:24923-24942 | None:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | - | tig0018891:25079-25098 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | + | tig0018891:25079-25098 | Msa1369700:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | + | tig0018891:25080-25099 | Msa1369700:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | + | tig0018891:25081-25100 | Msa1369700:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | + | tig0018891:25148-25167 | Msa1369700:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | + | tig0018891:25149-25168 | Msa1369700:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | - | tig0018891:25165-25184 | None:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | - | tig0018891:25166-25185 | None:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | + | tig0018891:25254-25273 | Msa1369700:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | + | tig0018891:25269-25288 | Msa1369700:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | - | tig0018891:25287-25306 | None:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | - | tig0018891:25288-25307 | None:intergenic | 35.0% | |
| GATTAGGTGCAATGATGAAA+AGG | + | tig0018891:25325-25344 | Msa1369700:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | + | tig0018891:25380-25399 | Msa1369700:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | - | tig0018891:25544-25563 | None:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | + | tig0018891:25541-25560 | Msa1369700:CDS | 35.0% | |
| ATTGGAGGGACATATATGCA+TGG | + | tig0018891:24683-24702 | Msa1369700:CDS | 40.0% | |
| TTGGAGGGACATATATGCAT+GGG | + | tig0018891:24684-24703 | Msa1369700:CDS | 40.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | - | tig0018891:24778-24797 | None:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | + | tig0018891:24775-24794 | Msa1369700:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | - | tig0018891:24868-24887 | None:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | - | tig0018891:24910-24929 | None:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | - | tig0018891:24914-24933 | None:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | + | tig0018891:25035-25054 | Msa1369700:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | + | tig0018891:25155-25174 | Msa1369700:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | + | tig0018891:25212-25231 | Msa1369700:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | + | tig0018891:25290-25309 | Msa1369700:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | + | tig0018891:25349-25368 | Msa1369700:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | tig0018891:25369-25388 | Msa1369700:CDS | 40.0% | |
| ATTGGAGGGACATATATGCA+TGG | + | tig0018891:24683-24702 | Msa1369700:CDS | 40.0% | |
| TTGGAGGGACATATATGCAT+GGG | + | tig0018891:24684-24703 | Msa1369700:CDS | 40.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | - | tig0018891:24778-24797 | None:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | + | tig0018891:24775-24794 | Msa1369700:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | - | tig0018891:24868-24887 | None:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | - | tig0018891:24910-24929 | None:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | - | tig0018891:24914-24933 | None:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | + | tig0018891:25035-25054 | Msa1369700:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | + | tig0018891:25155-25174 | Msa1369700:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | + | tig0018891:25212-25231 | Msa1369700:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | + | tig0018891:25290-25309 | Msa1369700:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | + | tig0018891:25349-25368 | Msa1369700:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | tig0018891:25369-25388 | Msa1369700:CDS | 40.0% | |
| TGGAGGGACATATATGCATG+GGG | + | tig0018891:24685-24704 | Msa1369700:CDS | 45.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | - | tig0018891:24740-24759 | None:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | - | tig0018891:24901-24920 | None:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | - | tig0018891:24906-24925 | None:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | - | tig0018891:24920-24939 | None:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | + | tig0018891:25089-25108 | Msa1369700:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | + | tig0018891:25280-25299 | Msa1369700:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | + | tig0018891:25476-25495 | Msa1369700:CDS | 45.0% | |
| TGGAGGGACATATATGCATG+GGG | + | tig0018891:24685-24704 | Msa1369700:CDS | 45.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | - | tig0018891:24740-24759 | None:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | - | tig0018891:24901-24920 | None:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | - | tig0018891:24906-24925 | None:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | - | tig0018891:24920-24939 | None:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | + | tig0018891:25089-25108 | Msa1369700:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | + | tig0018891:25280-25299 | Msa1369700:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | + | tig0018891:25476-25495 | Msa1369700:CDS | 45.0% | |
| GGAGTGCGATTCACTGATGA+AGG | + | tig0018891:25463-25482 | Msa1369700:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | + | tig0018891:25466-25485 | Msa1369700:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | + | tig0018891:25482-25501 | Msa1369700:CDS | 50.0% | |
| GGAGTGCGATTCACTGATGA+AGG | + | tig0018891:25463-25482 | Msa1369700:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | + | tig0018891:25466-25485 | Msa1369700:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | + | tig0018891:25482-25501 | Msa1369700:CDS | 50.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | - | tig0018891:24847-24866 | None:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | + | tig0018891:25488-25507 | Msa1369700:CDS | 55.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | - | tig0018891:24847-24866 | None:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | + | tig0018891:25488-25507 | Msa1369700:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018891 | gene | 24675 | 25577 | 24675 | ID=Msa1369700;Name=Msa1369700 |
| tig0018891 | mRNA | 24675 | 25577 | 24675 | ID=Msa1369700-mRNA-1;Parent=Msa1369700;Name=Msa1369700-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|300 |
| tig0018891 | exon | 24675 | 25577 | 24675 | ID=Msa1369700-mRNA-1:exon:1312;Parent=Msa1369700-mRNA-1 |
| tig0018891 | CDS | 24675 | 25577 | 24675 | ID=Msa1369700-mRNA-1:cds;Parent=Msa1369700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
