AlfalfaGEDB | Msa1339940

M. sativa cultivar zhongmu-4 / Msa1339940

KEGG: K15040
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805
PFAM: PF01459.25

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339940	XP_003609006.1	97.131	244	7	0	24	267	1	244	1.73e-175	493

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339940	sp\|Q9SRH5\|VDAC1_ARATH	35.689	283	136	6	24	267	1	276	2.57e-49	167

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339940	G7JPX4	97.131	244	7	0	24	267	1	244	8.24e-176	493

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044100	Msa1339940	0.832610	8.568896e-56	-8.615850e-47
Msa0611380	Msa1339940	0.853747	1.947884e-61	-8.615850e-47
Msa0618180	Msa1339940	0.838154	3.403774e-57	-8.615850e-47
Msa0618220	Msa1339940	0.826335	2.869864e-54	-8.615850e-47
Msa0619990	Msa1339940	0.826343	2.857179e-54	-8.615850e-47
Msa0628640	Msa1339940	0.865367	6.217910e-65	-8.615850e-47
Msa0631120	Msa1339940	0.846139	2.619956e-59	-8.615850e-47
Msa0666030	Msa1339940	0.843566	1.294721e-58	-8.615850e-47
Msa0669340	Msa1339940	0.850840	1.309070e-60	-8.615850e-47
Msa0701970	Msa1339940	0.851748	7.252634e-61	-8.615850e-47
Msa0716450	Msa1339940	0.860509	1.966308e-63	-8.615850e-47
Msa0717260	Msa1339940	0.881583	2.127815e-70	-8.615850e-47
Msa0734230	Msa1339940	0.857318	1.770631e-62	-8.615850e-47
Msa0758320	Msa1339940	0.872799	2.409443e-67	-8.615850e-47
Msa0775440	Msa1339940	0.852114	5.709309e-61	-8.615850e-47
Msa0799030	Msa1339940	0.856156	3.892246e-62	-8.615850e-47
Msa0799700	Msa1339940	0.827531	1.486068e-54	-8.615850e-47
Msa0812820	Msa1339940	0.841490	4.603936e-58	-8.615850e-47
Msa0837440	Msa1339940	0.839752	1.312888e-57	-8.615850e-47
Msa0837980	Msa1339940	0.880127	7.087169e-70	-8.615850e-47
Msa0141100	Msa1339940	0.849535	3.037864e-60	-8.615850e-47
Msa0183750	Msa1339940	0.851521	8.407663e-61	-8.615850e-47
Msa0185380	Msa1339940	0.811774	5.916463e-51	-8.615850e-47
Msa0191040	Msa1339940	0.834234	3.372206e-56	-8.615850e-47
Msa0206800	Msa1339940	0.802238	6.168208e-49	-8.615850e-47
Msa0220300	Msa1339940	0.833395	5.466406e-56	-8.615850e-47
Msa0233340	Msa1339940	0.833978	3.909677e-56	-8.615850e-47
Msa1227950	Msa1339940	0.853168	2.856305e-61	-8.615850e-47
Msa1227970	Msa1339940	0.842431	2.597073e-58	-8.615850e-47
Msa1255280	Msa1339940	0.827485	1.523994e-54	-8.615850e-47
Msa1258050	Msa1339940	0.826419	2.741041e-54	-8.615850e-47
Msa1266960	Msa1339940	0.866502	2.720986e-65	-8.615850e-47
Msa1271030	Msa1339940	0.811612	6.417775e-51	-8.615850e-47
Msa1308130	Msa1339940	0.863475	2.423652e-64	-8.615850e-47
Msa1321000	Msa1339940	0.812160	4.876421e-51	-8.615850e-47
Msa1339940	Msa1369700	0.867636	1.182792e-65	-8.615850e-47
Msa1339940	Msa1381140	0.809401	1.927313e-50	-8.615850e-47
Msa1339940	Msa1395870	0.845591	3.691787e-59	-8.615850e-47
Msa1339940	Msa1399560	0.861735	8.322906e-64	-8.615850e-47
Msa1339940	Msa1437190	0.857907	1.184924e-62	-8.615850e-47
Msa1339940	Msa1443840	0.852850	3.520637e-61	-8.615850e-47
Msa1339940	Msa1452060	0.995251	1.932549e-214	-8.615850e-47
Msa1339940	Msa1460380	0.868037	8.790714e-66	-8.615850e-47
Msa0374850	Msa1339940	0.846114	2.660712e-59	-8.615850e-47
Msa0375090	Msa1339940	0.854044	1.599189e-61	-8.615850e-47
Msa0385670	Msa1339940	0.844183	8.849660e-59	-8.615850e-47
Msa0418000	Msa1339940	0.801169	1.021913e-48	-8.615850e-47
Msa0435670	Msa1339940	0.825875	3.692576e-54	-8.615850e-47
Msa0470340	Msa1339940	0.855357	6.662237e-62	-8.615850e-47
Msa0470860	Msa1339940	0.848803	4.856365e-60	-8.615850e-47
Msa0479680	Msa1339940	0.844039	9.673970e-59	-8.615850e-47
Msa0479700	Msa1339940	0.844032	9.718418e-59	-8.615850e-47
Msa0480950	Msa1339940	0.854766	9.893639e-62	-8.615850e-47
Msa0981010	Msa1339940	0.825443	4.675113e-54	-8.615850e-47
Msa1001770	Msa1339940	0.809213	2.114358e-50	-8.615850e-47
Msa1002620	Msa1339940	0.856018	4.271094e-62	-8.615850e-47
Msa1033560	Msa1339940	0.814075	1.853478e-51	-8.615850e-47
Msa0251240	Msa1339940	0.806845	6.748455e-50	-8.615850e-47
Msa0288190	Msa1339940	0.804934	1.702363e-49	-8.615850e-47
Msa0311690	Msa1339940	0.824812	6.588573e-54	-8.615850e-47
Msa0315250	Msa1339940	0.800263	1.564638e-48	-8.615850e-47
Msa0326540	Msa1339940	0.820175	7.881703e-53	-8.615850e-47
Msa1113850	Msa1339940	0.840748	7.213174e-58	-8.615850e-47
Msa1160400	Msa1339940	0.814811	1.273616e-51	-8.615850e-47
Msa1190120	Msa1339940	0.862966	3.483373e-64	-8.615850e-47
Msa1203000	Msa1339940	0.848920	4.505579e-60	-8.615850e-47
Msa1207870	Msa1339940	0.823810	1.133432e-53	-8.615850e-47
Msa1211550	Msa1339940	0.965180	2.849007e-124	-8.615850e-47
Msa1217940	Msa1339940	0.811214	7.831281e-51	-8.615850e-47
Msa1219260	Msa1339940	0.859569	3.778394e-63	-8.615850e-47
Msa0531430	Msa1339940	0.866543	2.640210e-65	-8.615850e-47
Msa0534570	Msa1339940	0.831551	1.565771e-55	-8.615850e-47
Msa0534590	Msa1339940	0.847530	1.091186e-59	-8.615850e-47
Msa0565600	Msa1339940	0.863726	2.026399e-64	-8.615850e-47
Msa0590800	Msa1339940	0.835549	1.573183e-56	-8.615850e-47
Msa0853320	Msa1339940	0.841595	4.321338e-58	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339940	MtrunA17_Chr4g0060181	97.131	244	7	0	24	267	1	244	1.59e-179	493
Msa1339940	MtrunA17_Chr8g0362621	34.982	283	138	5	24	267	1	276	9.38e-49	162
Msa1339940	MtrunA17_Chr7g0216561	35.106	282	137	6	25	267	3	277	2.14e-47	159
Msa1339940	MtrunA17_Chr6g0452811	34.035	285	140	6	24	267	1	278	2.62e-46	156
Msa1339940	MtrunA17_Chr5g0401201	26.855	283	161	5	24	267	1	276	1.82e-29	112
Msa1339940	MtrunA17_Chr1g0152591	25.177	282	165	5	25	267	3	277	4.87e-24	97.8
Msa1339940	MtrunA17_Chr4g0072511	24.742	291	160	5	24	267	1	279	5.16e-22	92.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339940	AT3G01280.1	35.689	283	136	6	24	267	1	276	2.61e-50	167
Msa1339940	AT5G15090.1	31.802	283	145	7	24	267	1	274	8.16e-41	142
Msa1339940	AT5G15090.2	31.802	283	145	7	24	267	1	274	8.16e-41	142
Msa1339940	AT5G67500.3	28.421	285	154	6	24	267	1	276	1.93e-31	117
Msa1339940	AT5G57490.1	27.682	289	149	7	24	267	1	274	1.86e-29	112
Msa1339940	AT5G67500.2	26.774	310	154	6	24	267	1	303	1.08e-27	108
Msa1339940	AT5G67500.1	27.509	269	146	5	24	251	1	261	6.69e-27	106
Msa1339940	AT3G49920.1	28.279	244	157	3	24	267	1	226	1.47e-18	82.4

Find 101 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAATGTTTGCTTGCATTTC+AGG	0.110539	tig0003589:-54208	None:intergenic
ATGGCCGGCGAAATGGATTT+TGG	0.152016	tig0003589:+53809	Msa1339940:CDS
ACTGGATGCATTGGATTATT+AGG	0.191506	tig0003589:+53219	Msa1339940:CDS
CTCTCATTCAACAAGGATTT+TGG	0.192793	tig0003589:+53768	Msa1339940:CDS
CGAGCCTTTAGCAATGTTTC+AGG	0.209136	tig0003589:-53719	None:intergenic
CAATAGCTACAGTTGATATT+TGG	0.215196	tig0003589:+51869	Msa1339940:five_prime_UTR
TTTCAAACAATGACACAAAT+TGG	0.223326	tig0003589:+53944	Msa1339940:three_prime_UTR
TTGTTAACATGATAATTTAT+TGG	0.230813	tig0003589:-51976	None:intergenic
TTGCAATGGCCGTCTGGGTT+AGG	0.244222	tig0003589:-53628	None:intergenic
AATAGATTCACTGGGATTAC+TGG	0.244615	tig0003589:+53201	Msa1339940:CDS
ATAAATCTTCTCTCCCCTTT+AGG	0.264493	tig0003589:-54165	None:intergenic
CTTCACTTTCGACATTGTTT+AGG	0.305302	tig0003589:+54136	Msa1339940:three_prime_UTR
CTTGTGTTGCAATGGCCGTC+TGG	0.310688	tig0003589:-53634	None:intergenic
TGCAATGGCCGTCTGGGTTA+GGG	0.312768	tig0003589:-53627	None:intergenic
AAGTTTCCTATTGTACAAAA+TGG	0.313559	tig0003589:-51931	None:intergenic
TCACTTTCACTACCAATTCA+TGG	0.317926	tig0003589:+52246	Msa1339940:CDS
AAGAAATTCTACCTGGATTC+AGG	0.317980	tig0003589:+53011	Msa1339940:CDS
TGTTAACATGATAATTTATT+GGG	0.320485	tig0003589:-51975	None:intergenic
GACCCTGTTGTAAAATTATC+AGG	0.320742	tig0003589:+53261	Msa1339940:CDS
ACAGAATGCTTGTTCCTAAA+AGG	0.329840	tig0003589:-53284	None:intergenic
GGGGTTTACTTCATGATAAA+TGG	0.338544	tig0003589:-53606	None:intergenic
TTATCTCCTGGGCATAGATT+AGG	0.368175	tig0003589:-53882	None:intergenic
ACAAAATGGTTCAATTGATT+TGG	0.377663	tig0003589:-51917	None:intergenic
AAAGGCTCGCTTTGACAGTT+CGG	0.382952	tig0003589:+53733	Msa1339940:CDS
TGTTTAGGATTATTCCTAAA+GGG	0.384551	tig0003589:+54151	Msa1339940:three_prime_UTR
TATCTCCTGGGCATAGATTA+GGG	0.396585	tig0003589:-53881	None:intergenic
TATCAACTGTAGCTATTGTT+TGG	0.400190	tig0003589:-51864	None:intergenic
CTGCATTCCAATCCATGAAT+TGG	0.405723	tig0003589:-52258	None:intergenic
TGTAACTATGGCCGGCGAAA+TGG	0.408333	tig0003589:+53802	Msa1339940:CDS
AAGGCTCGCTTTGACAGTTC+GGG	0.409065	tig0003589:+53734	Msa1339940:CDS
TTCACTACCAATTCATGGAT+TGG	0.415231	tig0003589:+52251	Msa1339940:CDS
AATGGTACCTTCCCGGAGTC+TGG	0.421783	tig0003589:-53055	None:intergenic
CATGTTAACAAATCACAAAA+AGG	0.423147	tig0003589:+51988	Msa1339940:exon
ACCAAGTTGACTGCTGGCTT+CGG	0.424833	tig0003589:+53351	Msa1339940:CDS
GCAAGGCAACATTGGCTCCT+AGG	0.425523	tig0003589:-53308	None:intergenic
GAATGTTTGCTTGCATTTCA+GGG	0.428071	tig0003589:-54207	None:intergenic
TCTAATACTAGTACTGTTGT+TGG	0.428133	tig0003589:-53987	None:intergenic
CCTGGTGTATATTCTAATCT+TGG	0.430429	tig0003589:+52070	Msa1339940:CDS
GATAATTTATTGGGAGGGAA+AGG	0.435347	tig0003589:-51966	None:intergenic
CAATTCATGGATTGGAATGC+AGG	0.439436	tig0003589:+52259	Msa1339940:CDS
ACAAAGTAATGGTACCTTCC+CGG	0.441553	tig0003589:-53062	None:intergenic
ATATTCTAATCTTGGCGATA+AGG	0.441721	tig0003589:+52078	Msa1339940:CDS
AGCTTGTCACTCAAGGAAAC+TGG	0.442221	tig0003589:+53665	Msa1339940:CDS
ACTGGGATTACTGGATGCAT+TGG	0.448328	tig0003589:+53210	Msa1339940:CDS
AACTGAGAAGTTGCTGGATG+AGG	0.457094	tig0003589:+53917	Msa1339940:three_prime_UTR
GGAGGGAAAGGGAAGGCAAA+GGG	0.457212	tig0003589:-51954	None:intergenic
AAATGGTTCAATTGATTTGG+TGG	0.459417	tig0003589:-51914	None:intergenic
CAGGGTCATATGCTCCATCT+TGG	0.460843	tig0003589:-53245	None:intergenic
ACAAGGTCAATGAAGCTTCA+AGG	0.465289	tig0003589:-53389	None:intergenic
GCCATGGAGACTCCAACCTT+TGG	0.474824	tig0003589:-53851	None:intergenic
CAGTACTTGAATAGATTCAC+TGG	0.475573	tig0003589:+53192	Msa1339940:CDS
AACATGATAATTTATTGGGA+GGG	0.491687	tig0003589:-51971	None:intergenic
TAAAATGAAAGCTTATCTCC+TGG	0.495555	tig0003589:-53894	None:intergenic
AACTTGGTTATCGATCTTGT+TGG	0.497298	tig0003589:-53336	None:intergenic
TTTGACAGTTCGGGCAAAGT+AGG	0.498953	tig0003589:+53743	Msa1339940:CDS
AGCAAAATGAGCAAGAGTCC+TGG	0.500833	tig0003589:+52052	Msa1339940:CDS
GCAATGGCCGTCTGGGTTAG+GGG	0.501382	tig0003589:-53626	None:intergenic
CAAGGCAACATTGGCTCCTA+GGG	0.505987	tig0003589:-53307	None:intergenic
ATAATTTATTGGGAGGGAAA+GGG	0.507024	tig0003589:-51965	None:intergenic
GCCGAAGCCAGCAGTCAACT+TGG	0.507792	tig0003589:-53352	None:intergenic
AATTGGTAGTGAAAGTGAAT+AGG	0.508379	tig0003589:-52241	None:intergenic
TTGTTTAGGATTATTCCTAA+AGG	0.515805	tig0003589:+54150	Msa1339940:three_prime_UTR
TTTATTAGATTGTCTTTACA+AGG	0.517926	tig0003589:+52201	Msa1339940:intron
AAAATGAAAGCTTATCTCCT+GGG	0.518903	tig0003589:-53893	None:intergenic
TTGTGTTGCAATGGCCGTCT+GGG	0.533482	tig0003589:-53633	None:intergenic
GGAACAAGCATTCTGTCCCT+AGG	0.535981	tig0003589:+53291	Msa1339940:CDS
AAGGAAACTGGTGTCACCAT+TGG	0.538400	tig0003589:+53677	Msa1339940:CDS
AATGCAGGCTTCTCTTGTAA+AGG	0.539074	tig0003589:+52274	Msa1339940:CDS
AAATGTACCGTACCAGACTC+CGG	0.544121	tig0003589:+53043	Msa1339940:CDS
CAATGGCCGTCTGGGTTAGG+GGG	0.545151	tig0003589:-53625	None:intergenic
TTGAAAACAGTCCTGAATCC+AGG	0.545165	tig0003589:-53022	None:intergenic
ACAGTTCAAGAAATTCTACC+TGG	0.548340	tig0003589:+53004	Msa1339940:intron
TCGATAACCAAGTTGACTGC+TGG	0.549363	tig0003589:+53345	Msa1339940:CDS
GGGAGGGAAAGGGAAGGCAA+AGG	0.554970	tig0003589:-51955	None:intergenic
GGCCCCAAAATCCATTTCGC+CGG	0.561250	tig0003589:-53813	None:intergenic
TAACATGATAATTTATTGGG+AGG	0.562148	tig0003589:-51972	None:intergenic
CGATCTTGTTGGTATGTGCA+AGG	0.562305	tig0003589:-53325	None:intergenic
AACCTTTGGAATCTTATCAT+CGG	0.566666	tig0003589:-53837	None:intergenic
AAATGCATGCTGAGCACCAA+TGG	0.571123	tig0003589:-53693	None:intergenic
GGATTATTAGGAAACCAAGA+TGG	0.572580	tig0003589:+53231	Msa1339940:CDS
GTTTAGGATTATTCCTAAAG+GGG	0.575216	tig0003589:+54152	Msa1339940:three_prime_UTR
TCCAAAGGTTGGAGTCTCCA+TGG	0.577690	tig0003589:+53850	Msa1339940:CDS
ATGCTTCACTTGTGTTGCAA+TGG	0.577920	tig0003589:-53642	None:intergenic
GATGATAAGATTCCAAAGGT+TGG	0.579129	tig0003589:+53839	Msa1339940:CDS
AATCTTGGCGATAAGGCCAA+AGG	0.579547	tig0003589:+52085	Msa1339940:CDS
AAGCAAACATTCAGATTCTG+AGG	0.582598	tig0003589:+54218	Msa1339940:three_prime_UTR
AGATTAGGGTCTTAGAGCCA+TGG	0.589733	tig0003589:-53867	None:intergenic
TAAGACCCTAATCTATGCCC+AGG	0.590456	tig0003589:+53876	Msa1339940:exon
AATGTACCGTACCAGACTCC+GGG	0.592748	tig0003589:+53044	Msa1339940:CDS
CTTTGGAATCTTATCATCGG+TGG	0.598433	tig0003589:-53834	None:intergenic
GAAGCATAGCTTGTCACTCA+AGG	0.598774	tig0003589:+53658	Msa1339940:CDS
TACCTTCCCGGAGTCTGGTA+CGG	0.603084	tig0003589:-53050	None:intergenic
TTTATTGGGAGGGAAAGGGA+AGG	0.604666	tig0003589:-51961	None:intergenic
GGTCAATGAAGCTTCAAGGA+AGG	0.612698	tig0003589:-53385	None:intergenic
AGTACTTGAATAGATTCACT+GGG	0.614520	tig0003589:+53193	Msa1339940:CDS
TGGTATGTGCAAGGCAACAT+TGG	0.624437	tig0003589:-53316	None:intergenic
CCAAGATTAGAATATACACC+AGG	0.632111	tig0003589:-52070	None:intergenic
AGCAAACATTCAGATTCTGA+GGG	0.649808	tig0003589:+54219	Msa1339940:three_prime_UTR
CACCGATGATAAGATTCCAA+AGG	0.660499	tig0003589:+53835	Msa1339940:CDS
TACCGTACCAGACTCCGGGA+AGG	0.677553	tig0003589:+53048	Msa1339940:CDS
GTAGGTGCTCTCATTCAACA+AGG	0.711960	tig0003589:+53761	Msa1339940:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGTTAACATGATAATTTATT+GGG	-	tig0003589:51978-51997	None:intergenic	15.0%
!!	TTGTTAACATGATAATTTAT+TGG	-	tig0003589:51979-51998	None:intergenic	15.0%
!!!	TACTTTTATTTTTCTACTTA+TGG	+	tig0003589:52408-52427	Msa1339940:intron	15.0%
!!	ATATCACATTATTTAAATCA+AGG	+	tig0003589:52637-52656	Msa1339940:intron	15.0%
!!	TATCACATTATTTAAATCAA+GGG	+	tig0003589:52638-52657	Msa1339940:intron	15.0%
!!!	TTTCTATACATATTTCTAAA+CGG	-	tig0003589:52863-52882	None:intergenic	15.0%
!!!	ATTTTTCTGATAAATTTAGT+CGG	-	tig0003589:53437-53456	None:intergenic	15.0%
!!	TTAAATATTTCATATTATGC+AGG	+	tig0003589:53555-53574	Msa1339940:intron	15.0%
!!	TGTTAACATGATAATTTATT+GGG	-	tig0003589:51978-51997	None:intergenic	15.0%
!!	TTGTTAACATGATAATTTAT+TGG	-	tig0003589:51979-51998	None:intergenic	15.0%
!!!	TACTTTTATTTTTCTACTTA+TGG	+	tig0003589:52408-52427	Msa1339940:intron	15.0%
!!	ATATCACATTATTTAAATCA+AGG	+	tig0003589:52637-52656	Msa1339940:intron	15.0%
!!	TATCACATTATTTAAATCAA+GGG	+	tig0003589:52638-52657	Msa1339940:intron	15.0%
!!!	TTTCTATACATATTTCTAAA+CGG	-	tig0003589:52863-52882	None:intergenic	15.0%
!!!	ATTTTTCTGATAAATTTAGT+CGG	-	tig0003589:53437-53456	None:intergenic	15.0%
!!	TTAAATATTTCATATTATGC+AGG	+	tig0003589:53555-53574	Msa1339940:intron	15.0%
!!	ATTTCAGTATAATACTAGTA+AGG	-	tig0003589:52167-52186	None:intergenic	20.0%
!!	TTTATTAGATTGTCTTTACA+AGG	+	tig0003589:52201-52220	Msa1339940:intron	20.0%
!!	TGATACTATACATAGTATAT+AGG	-	tig0003589:53093-53112	None:intergenic	20.0%
!!	GACTAAATTTATCAGAAAAA+TGG	+	tig0003589:53436-53455	Msa1339940:intron	20.0%
!!	AATTTATCAGAAAAATGGAT+AGG	+	tig0003589:53441-53460	Msa1339940:intron	20.0%
!!	ATTTCAGTATAATACTAGTA+AGG	-	tig0003589:52167-52186	None:intergenic	20.0%
!!	TTTATTAGATTGTCTTTACA+AGG	+	tig0003589:52201-52220	Msa1339940:intron	20.0%
!!	TGATACTATACATAGTATAT+AGG	-	tig0003589:53093-53112	None:intergenic	20.0%
!!	GACTAAATTTATCAGAAAAA+TGG	+	tig0003589:53436-53455	Msa1339940:intron	20.0%
!!	AATTTATCAGAAAAATGGAT+AGG	+	tig0003589:53441-53460	Msa1339940:intron	20.0%
!!	TGGAAATTTCATTTTATGCA+TGG	+	tig0003589:51889-51908	Msa1339940:five_prime_UTR	25.0%
!	ACAAAATGGTTCAATTGATT+TGG	-	tig0003589:51920-51939	None:intergenic	25.0%
!!	ATTGAACCATTTTGTACAAT+AGG	+	tig0003589:51925-51944	Msa1339940:five_prime_UTR	25.0%
!	AAGTTTCCTATTGTACAAAA+TGG	-	tig0003589:51934-51953	None:intergenic	25.0%
!	AACATGATAATTTATTGGGA+GGG	-	tig0003589:51974-51993	None:intergenic	25.0%
!	TAACATGATAATTTATTGGG+AGG	-	tig0003589:51975-51994	None:intergenic	25.0%
!	CATGTTAACAAATCACAAAA+AGG	+	tig0003589:51988-52007	Msa1339940:exon	25.0%
!	ATGGAATTTGATAAAACCTT+TGG	-	tig0003589:52104-52123	None:intergenic	25.0%
!!	TTCTAAAGATTCAAATGGAA+TGG	-	tig0003589:52123-52142	None:intergenic	25.0%
!	ATATCAACTTAGCTTATGTT+TGG	+	tig0003589:52305-52324	Msa1339940:intron	25.0%
!	GAGAAAGTTTGAAAAATTTG+AGG	-	tig0003589:52560-52579	None:intergenic	25.0%
!	AAGATAGAAAATGGAATGAT+GGG	-	tig0003589:52582-52601	None:intergenic	25.0%
!	AAAGATAGAAAATGGAATGA+TGG	-	tig0003589:52583-52602	None:intergenic	25.0%
!	AGACTACAAAAGATAGAAAA+TGG	-	tig0003589:52591-52610	None:intergenic	25.0%
!!	CATTGAATGGTATTTTGTTA+TGG	-	tig0003589:52697-52716	None:intergenic	25.0%
!	CAATCTTCATTTCATATGAT+TGG	+	tig0003589:52772-52791	Msa1339940:intron	25.0%
!!	AGGGTTCTAATAAATTAACA+TGG	-	tig0003589:52924-52943	None:intergenic	25.0%
!	TAGAATTTCTTGAACTGTAA+TGG	-	tig0003589:53002-53021	None:intergenic	25.0%
!	TATAGGTAAGTACAAAGTAA+TGG	-	tig0003589:53076-53095	None:intergenic	25.0%
!	TATGAATTCATTGTGATTTG+AGG	-	tig0003589:53162-53181	None:intergenic	25.0%
!	TCAAATCACAATGAATTCAT+AGG	+	tig0003589:53161-53180	Msa1339940:intron	25.0%
!!!	TATGATGGATATATCTTACA+AGG	-	tig0003589:53409-53428	None:intergenic	25.0%
!	TTTCAAACAATGACACAAAT+TGG	+	tig0003589:53944-53963	Msa1339940:three_prime_UTR	25.0%
!!	TACTTTTCTTAGAGTTTTAC+TGG	+	tig0003589:54100-54119	Msa1339940:three_prime_UTR	25.0%
!!	TTGTTTAGGATTATTCCTAA+AGG	+	tig0003589:54150-54169	Msa1339940:three_prime_UTR	25.0%
!!	TGTTTAGGATTATTCCTAAA+GGG	+	tig0003589:54151-54170	Msa1339940:three_prime_UTR	25.0%
!!	TGGAAATTTCATTTTATGCA+TGG	+	tig0003589:51889-51908	Msa1339940:five_prime_UTR	25.0%
!	ACAAAATGGTTCAATTGATT+TGG	-	tig0003589:51920-51939	None:intergenic	25.0%
!!	ATTGAACCATTTTGTACAAT+AGG	+	tig0003589:51925-51944	Msa1339940:five_prime_UTR	25.0%
!	AAGTTTCCTATTGTACAAAA+TGG	-	tig0003589:51934-51953	None:intergenic	25.0%
!	AACATGATAATTTATTGGGA+GGG	-	tig0003589:51974-51993	None:intergenic	25.0%
!	TAACATGATAATTTATTGGG+AGG	-	tig0003589:51975-51994	None:intergenic	25.0%
!	CATGTTAACAAATCACAAAA+AGG	+	tig0003589:51988-52007	Msa1339940:exon	25.0%
!	ATGGAATTTGATAAAACCTT+TGG	-	tig0003589:52104-52123	None:intergenic	25.0%
!!	TTCTAAAGATTCAAATGGAA+TGG	-	tig0003589:52123-52142	None:intergenic	25.0%
!	ATATCAACTTAGCTTATGTT+TGG	+	tig0003589:52305-52324	Msa1339940:intron	25.0%
!	GAGAAAGTTTGAAAAATTTG+AGG	-	tig0003589:52560-52579	None:intergenic	25.0%
!	AAGATAGAAAATGGAATGAT+GGG	-	tig0003589:52582-52601	None:intergenic	25.0%
!	AAAGATAGAAAATGGAATGA+TGG	-	tig0003589:52583-52602	None:intergenic	25.0%
!	AGACTACAAAAGATAGAAAA+TGG	-	tig0003589:52591-52610	None:intergenic	25.0%
!!	CATTGAATGGTATTTTGTTA+TGG	-	tig0003589:52697-52716	None:intergenic	25.0%
!	CAATCTTCATTTCATATGAT+TGG	+	tig0003589:52772-52791	Msa1339940:intron	25.0%
!!	AGGGTTCTAATAAATTAACA+TGG	-	tig0003589:52924-52943	None:intergenic	25.0%
!	TAGAATTTCTTGAACTGTAA+TGG	-	tig0003589:53002-53021	None:intergenic	25.0%
!	TATAGGTAAGTACAAAGTAA+TGG	-	tig0003589:53076-53095	None:intergenic	25.0%
!	TATGAATTCATTGTGATTTG+AGG	-	tig0003589:53162-53181	None:intergenic	25.0%
!	TCAAATCACAATGAATTCAT+AGG	+	tig0003589:53161-53180	Msa1339940:intron	25.0%
!!!	TATGATGGATATATCTTACA+AGG	-	tig0003589:53409-53428	None:intergenic	25.0%
!	TTTCAAACAATGACACAAAT+TGG	+	tig0003589:53944-53963	Msa1339940:three_prime_UTR	25.0%
!!	TACTTTTCTTAGAGTTTTAC+TGG	+	tig0003589:54100-54119	Msa1339940:three_prime_UTR	25.0%
!!	TTGTTTAGGATTATTCCTAA+AGG	+	tig0003589:54150-54169	Msa1339940:three_prime_UTR	25.0%
!!	TGTTTAGGATTATTCCTAAA+GGG	+	tig0003589:54151-54170	Msa1339940:three_prime_UTR	25.0%
	TATCAACTGTAGCTATTGTT+TGG	-	tig0003589:51867-51886	None:intergenic	30.0%
!	CAATAGCTACAGTTGATATT+TGG	+	tig0003589:51869-51888	Msa1339940:five_prime_UTR	30.0%
!!	AAATGGTTCAATTGATTTGG+TGG	-	tig0003589:51917-51936	None:intergenic	30.0%
	ATAATTTATTGGGAGGGAAA+GGG	-	tig0003589:51968-51987	None:intergenic	30.0%
	ATATTCTAATCTTGGCGATA+AGG	+	tig0003589:52078-52097	Msa1339940:CDS	30.0%
!	CACTCTTCTAAAGATTCAAA+TGG	-	tig0003589:52128-52147	None:intergenic	30.0%
!!	AATTGGTAGTGAAAGTGAAT+AGG	-	tig0003589:52244-52263	None:intergenic	30.0%
	TAAAAGATTAAGCCTCTGTT+TGG	-	tig0003589:52390-52409	None:intergenic	30.0%
	TTAGCCAAATGTTATTCTGT+TGG	+	tig0003589:52455-52474	Msa1339940:intron	30.0%
	ACTTCCAACAGAATAACATT+TGG	-	tig0003589:52462-52481	None:intergenic	30.0%
	ATGTTATTCTGTTGGAAGTA+TGG	+	tig0003589:52463-52482	Msa1339940:intron	30.0%
	CACATTATTTAAATCAAGGG+TGG	+	tig0003589:52641-52660	Msa1339940:intron	30.0%
	ATGTATGTGAAGTCATTGAA+TGG	-	tig0003589:52710-52729	None:intergenic	30.0%
	TATTAGAACCCTGAATGAAA+TGG	+	tig0003589:52932-52951	Msa1339940:intron	30.0%
	AATCACAATGAATTCATAGG+TGG	+	tig0003589:53164-53183	Msa1339940:intron	30.0%
	AGTACTTGAATAGATTCACT+GGG	+	tig0003589:53193-53212	Msa1339940:CDS	30.0%
!	GTAAAATTATCAGGCCTTTT+AGG	+	tig0003589:53270-53289	Msa1339940:CDS	30.0%
	ATTTAGTCGGTAGTTTATGA+TGG	-	tig0003589:53424-53443	None:intergenic	30.0%
!	TTTTCCTGAAACATTGCTAA+AGG	+	tig0003589:53715-53734	Msa1339940:CDS	30.0%
!!!	GCAGAGATTTTTTGTAACTA+TGG	+	tig0003589:53790-53809	Msa1339940:CDS	30.0%
!!!	AGATTTTTTGTAACTATGGC+CGG	+	tig0003589:53794-53813	Msa1339940:CDS	30.0%
!!	AACCTTTGGAATCTTATCAT+CGG	-	tig0003589:53840-53859	None:intergenic	30.0%
	AAAATGAAAGCTTATCTCCT+GGG	-	tig0003589:53896-53915	None:intergenic	30.0%
	TAAAATGAAAGCTTATCTCC+TGG	-	tig0003589:53897-53916	None:intergenic	30.0%
!	ATTTTAAACTGAGAAGTTGC+TGG	+	tig0003589:53911-53930	Msa1339940:three_prime_UTR	30.0%
	TCTAATACTAGTACTGTTGT+TGG	-	tig0003589:53990-54009	None:intergenic	30.0%
!	GTTTAGGATTATTCCTAAAG+GGG	+	tig0003589:54152-54171	Msa1339940:three_prime_UTR	30.0%
	TATCAACTGTAGCTATTGTT+TGG	-	tig0003589:51867-51886	None:intergenic	30.0%
!	CAATAGCTACAGTTGATATT+TGG	+	tig0003589:51869-51888	Msa1339940:five_prime_UTR	30.0%
!!	AAATGGTTCAATTGATTTGG+TGG	-	tig0003589:51917-51936	None:intergenic	30.0%
	ATAATTTATTGGGAGGGAAA+GGG	-	tig0003589:51968-51987	None:intergenic	30.0%
	ATATTCTAATCTTGGCGATA+AGG	+	tig0003589:52078-52097	Msa1339940:CDS	30.0%
!	CACTCTTCTAAAGATTCAAA+TGG	-	tig0003589:52128-52147	None:intergenic	30.0%
!!	AATTGGTAGTGAAAGTGAAT+AGG	-	tig0003589:52244-52263	None:intergenic	30.0%
	TAAAAGATTAAGCCTCTGTT+TGG	-	tig0003589:52390-52409	None:intergenic	30.0%
	TTAGCCAAATGTTATTCTGT+TGG	+	tig0003589:52455-52474	Msa1339940:intron	30.0%
	ACTTCCAACAGAATAACATT+TGG	-	tig0003589:52462-52481	None:intergenic	30.0%
	ATGTTATTCTGTTGGAAGTA+TGG	+	tig0003589:52463-52482	Msa1339940:intron	30.0%
	CACATTATTTAAATCAAGGG+TGG	+	tig0003589:52641-52660	Msa1339940:intron	30.0%
	ATGTATGTGAAGTCATTGAA+TGG	-	tig0003589:52710-52729	None:intergenic	30.0%
	TATTAGAACCCTGAATGAAA+TGG	+	tig0003589:52932-52951	Msa1339940:intron	30.0%
	AATCACAATGAATTCATAGG+TGG	+	tig0003589:53164-53183	Msa1339940:intron	30.0%
	AGTACTTGAATAGATTCACT+GGG	+	tig0003589:53193-53212	Msa1339940:CDS	30.0%
!	GTAAAATTATCAGGCCTTTT+AGG	+	tig0003589:53270-53289	Msa1339940:CDS	30.0%
	ATTTAGTCGGTAGTTTATGA+TGG	-	tig0003589:53424-53443	None:intergenic	30.0%
!	TTTTCCTGAAACATTGCTAA+AGG	+	tig0003589:53715-53734	Msa1339940:CDS	30.0%
!!!	GCAGAGATTTTTTGTAACTA+TGG	+	tig0003589:53790-53809	Msa1339940:CDS	30.0%
!!!	AGATTTTTTGTAACTATGGC+CGG	+	tig0003589:53794-53813	Msa1339940:CDS	30.0%
!!	AACCTTTGGAATCTTATCAT+CGG	-	tig0003589:53840-53859	None:intergenic	30.0%
	AAAATGAAAGCTTATCTCCT+GGG	-	tig0003589:53896-53915	None:intergenic	30.0%
	TAAAATGAAAGCTTATCTCC+TGG	-	tig0003589:53897-53916	None:intergenic	30.0%
!	ATTTTAAACTGAGAAGTTGC+TGG	+	tig0003589:53911-53930	Msa1339940:three_prime_UTR	30.0%
	TCTAATACTAGTACTGTTGT+TGG	-	tig0003589:53990-54009	None:intergenic	30.0%
!	GTTTAGGATTATTCCTAAAG+GGG	+	tig0003589:54152-54171	Msa1339940:three_prime_UTR	30.0%
	GATAATTTATTGGGAGGGAA+AGG	-	tig0003589:51969-51988	None:intergenic	35.0%
	CCAAGATTAGAATATACACC+AGG	-	tig0003589:52073-52092	None:intergenic	35.0%
	CCTGGTGTATATTCTAATCT+TGG	+	tig0003589:52070-52089	Msa1339940:CDS	35.0%
	TCACTTTCACTACCAATTCA+TGG	+	tig0003589:52246-52265	Msa1339940:CDS	35.0%
	TTCACTACCAATTCATGGAT+TGG	+	tig0003589:52251-52270	Msa1339940:CDS	35.0%
!	TTAGCTTATGTTTGGAACTG+CGG	+	tig0003589:52313-52332	Msa1339940:intron	35.0%
	TTTAGACTGCAAGAATGAGA+AGG	+	tig0003589:52353-52372	Msa1339940:intron	35.0%
	TGGCATCTAAATTTGCACTT+AGG	+	tig0003589:52792-52811	Msa1339940:intron	35.0%
!	AGGTAATGCCATTTCATTCA+GGG	-	tig0003589:52943-52962	None:intergenic	35.0%
	ACAGTTCAAGAAATTCTACC+TGG	+	tig0003589:53004-53023	Msa1339940:intron	35.0%
	AAGAAATTCTACCTGGATTC+AGG	+	tig0003589:53011-53030	Msa1339940:CDS	35.0%
	CAGTACTTGAATAGATTCAC+TGG	+	tig0003589:53192-53211	Msa1339940:CDS	35.0%
	AATAGATTCACTGGGATTAC+TGG	+	tig0003589:53201-53220	Msa1339940:CDS	35.0%
	ACTGGATGCATTGGATTATT+AGG	+	tig0003589:53219-53238	Msa1339940:CDS	35.0%
	GGATTATTAGGAAACCAAGA+TGG	+	tig0003589:53231-53250	Msa1339940:CDS	35.0%
	GACCCTGTTGTAAAATTATC+AGG	+	tig0003589:53261-53280	Msa1339940:CDS	35.0%
!	GGCCTGATAATTTTACAACA+GGG	-	tig0003589:53266-53285	None:intergenic	35.0%
!	AGGCCTGATAATTTTACAAC+AGG	-	tig0003589:53267-53286	None:intergenic	35.0%
	ACAGAATGCTTGTTCCTAAA+AGG	-	tig0003589:53287-53306	None:intergenic	35.0%
	AACTTGGTTATCGATCTTGT+TGG	-	tig0003589:53339-53358	None:intergenic	35.0%
	GGGGTTTACTTCATGATAAA+TGG	-	tig0003589:53609-53628	None:intergenic	35.0%
!	CTCTCATTCAACAAGGATTT+TGG	+	tig0003589:53768-53787	Msa1339940:CDS	35.0%
	GATGATAAGATTCCAAAGGT+TGG	+	tig0003589:53839-53858	Msa1339940:CDS	35.0%
	CTTCACTTTCGACATTGTTT+AGG	+	tig0003589:54136-54155	Msa1339940:three_prime_UTR	35.0%
	ATAAATCTTCTCTCCCCTTT+AGG	-	tig0003589:54168-54187	None:intergenic	35.0%
	GAATGTTTGCTTGCATTTCA+GGG	-	tig0003589:54210-54229	None:intergenic	35.0%
	TGAATGTTTGCTTGCATTTC+AGG	-	tig0003589:54211-54230	None:intergenic	35.0%
	AAGCAAACATTCAGATTCTG+AGG	+	tig0003589:54218-54237	Msa1339940:three_prime_UTR	35.0%
	AGCAAACATTCAGATTCTGA+GGG	+	tig0003589:54219-54238	Msa1339940:three_prime_UTR	35.0%
	GATAATTTATTGGGAGGGAA+AGG	-	tig0003589:51969-51988	None:intergenic	35.0%
	CCAAGATTAGAATATACACC+AGG	-	tig0003589:52073-52092	None:intergenic	35.0%
	CCTGGTGTATATTCTAATCT+TGG	+	tig0003589:52070-52089	Msa1339940:CDS	35.0%
	TCACTTTCACTACCAATTCA+TGG	+	tig0003589:52246-52265	Msa1339940:CDS	35.0%
	TTCACTACCAATTCATGGAT+TGG	+	tig0003589:52251-52270	Msa1339940:CDS	35.0%
!	TTAGCTTATGTTTGGAACTG+CGG	+	tig0003589:52313-52332	Msa1339940:intron	35.0%
	TTTAGACTGCAAGAATGAGA+AGG	+	tig0003589:52353-52372	Msa1339940:intron	35.0%
	TGGCATCTAAATTTGCACTT+AGG	+	tig0003589:52792-52811	Msa1339940:intron	35.0%
!	AGGTAATGCCATTTCATTCA+GGG	-	tig0003589:52943-52962	None:intergenic	35.0%
	ACAGTTCAAGAAATTCTACC+TGG	+	tig0003589:53004-53023	Msa1339940:intron	35.0%
	AAGAAATTCTACCTGGATTC+AGG	+	tig0003589:53011-53030	Msa1339940:CDS	35.0%
	CAGTACTTGAATAGATTCAC+TGG	+	tig0003589:53192-53211	Msa1339940:CDS	35.0%
	AATAGATTCACTGGGATTAC+TGG	+	tig0003589:53201-53220	Msa1339940:CDS	35.0%
	ACTGGATGCATTGGATTATT+AGG	+	tig0003589:53219-53238	Msa1339940:CDS	35.0%
	GGATTATTAGGAAACCAAGA+TGG	+	tig0003589:53231-53250	Msa1339940:CDS	35.0%
	GACCCTGTTGTAAAATTATC+AGG	+	tig0003589:53261-53280	Msa1339940:CDS	35.0%
!	GGCCTGATAATTTTACAACA+GGG	-	tig0003589:53266-53285	None:intergenic	35.0%
!	AGGCCTGATAATTTTACAAC+AGG	-	tig0003589:53267-53286	None:intergenic	35.0%
	ACAGAATGCTTGTTCCTAAA+AGG	-	tig0003589:53287-53306	None:intergenic	35.0%
	AACTTGGTTATCGATCTTGT+TGG	-	tig0003589:53339-53358	None:intergenic	35.0%
	GGGGTTTACTTCATGATAAA+TGG	-	tig0003589:53609-53628	None:intergenic	35.0%
!	CTCTCATTCAACAAGGATTT+TGG	+	tig0003589:53768-53787	Msa1339940:CDS	35.0%
	GATGATAAGATTCCAAAGGT+TGG	+	tig0003589:53839-53858	Msa1339940:CDS	35.0%
	CTTCACTTTCGACATTGTTT+AGG	+	tig0003589:54136-54155	Msa1339940:three_prime_UTR	35.0%
	ATAAATCTTCTCTCCCCTTT+AGG	-	tig0003589:54168-54187	None:intergenic	35.0%
	GAATGTTTGCTTGCATTTCA+GGG	-	tig0003589:54210-54229	None:intergenic	35.0%
	TGAATGTTTGCTTGCATTTC+AGG	-	tig0003589:54211-54230	None:intergenic	35.0%
	AAGCAAACATTCAGATTCTG+AGG	+	tig0003589:54218-54237	Msa1339940:three_prime_UTR	35.0%
	AGCAAACATTCAGATTCTGA+GGG	+	tig0003589:54219-54238	Msa1339940:three_prime_UTR	35.0%
	CTGCATTCCAATCCATGAAT+TGG	-	tig0003589:52261-52280	None:intergenic	40.0%
!!	CAATTCATGGATTGGAATGC+AGG	+	tig0003589:52259-52278	Msa1339940:CDS	40.0%
	AATGCAGGCTTCTCTTGTAA+AGG	+	tig0003589:52274-52293	Msa1339940:CDS	40.0%
	AGAAACAGTTTAGCCCTCAA+AGG	+	tig0003589:52878-52897	Msa1339940:intron	40.0%
	TTGTTTGTGGAGACCTTTGA+GGG	-	tig0003589:52894-52913	None:intergenic	40.0%
	TTTGTTTGTGGAGACCTTTG+AGG	-	tig0003589:52895-52914	None:intergenic	40.0%
	ACATGGCTCTCATTTGTTTG+TGG	-	tig0003589:52907-52926	None:intergenic	40.0%
!	CAGGTAATGCCATTTCATTC+AGG	-	tig0003589:52944-52963	None:intergenic	40.0%
	TTGAAAACAGTCCTGAATCC+AGG	-	tig0003589:53025-53044	None:intergenic	40.0%
	ACAAAGTAATGGTACCTTCC+CGG	-	tig0003589:53065-53084	None:intergenic	40.0%
	ACAAGGTCAATGAAGCTTCA+AGG	-	tig0003589:53392-53411	None:intergenic	40.0%
	ATGCTTCACTTGTGTTGCAA+TGG	-	tig0003589:53645-53664	None:intergenic	40.0%
!!	CTTTGGAATCTTATCATCGG+TGG	-	tig0003589:53837-53856	None:intergenic	40.0%
	CACCGATGATAAGATTCCAA+AGG	+	tig0003589:53835-53854	Msa1339940:CDS	40.0%
	TATCTCCTGGGCATAGATTA+GGG	-	tig0003589:53884-53903	None:intergenic	40.0%
	TTATCTCCTGGGCATAGATT+AGG	-	tig0003589:53885-53904	None:intergenic	40.0%
	CTGCATTCCAATCCATGAAT+TGG	-	tig0003589:52261-52280	None:intergenic	40.0%
!!	CAATTCATGGATTGGAATGC+AGG	+	tig0003589:52259-52278	Msa1339940:CDS	40.0%
	AATGCAGGCTTCTCTTGTAA+AGG	+	tig0003589:52274-52293	Msa1339940:CDS	40.0%
	AGAAACAGTTTAGCCCTCAA+AGG	+	tig0003589:52878-52897	Msa1339940:intron	40.0%
	TTGTTTGTGGAGACCTTTGA+GGG	-	tig0003589:52894-52913	None:intergenic	40.0%
	TTTGTTTGTGGAGACCTTTG+AGG	-	tig0003589:52895-52914	None:intergenic	40.0%
	ACATGGCTCTCATTTGTTTG+TGG	-	tig0003589:52907-52926	None:intergenic	40.0%
!	CAGGTAATGCCATTTCATTC+AGG	-	tig0003589:52944-52963	None:intergenic	40.0%
	TTGAAAACAGTCCTGAATCC+AGG	-	tig0003589:53025-53044	None:intergenic	40.0%
	ACAAAGTAATGGTACCTTCC+CGG	-	tig0003589:53065-53084	None:intergenic	40.0%
	ACAAGGTCAATGAAGCTTCA+AGG	-	tig0003589:53392-53411	None:intergenic	40.0%
	ATGCTTCACTTGTGTTGCAA+TGG	-	tig0003589:53645-53664	None:intergenic	40.0%
!!	CTTTGGAATCTTATCATCGG+TGG	-	tig0003589:53837-53856	None:intergenic	40.0%
	CACCGATGATAAGATTCCAA+AGG	+	tig0003589:53835-53854	Msa1339940:CDS	40.0%
	TATCTCCTGGGCATAGATTA+GGG	-	tig0003589:53884-53903	None:intergenic	40.0%
	TTATCTCCTGGGCATAGATT+AGG	-	tig0003589:53885-53904	None:intergenic	40.0%
	TTTATTGGGAGGGAAAGGGA+AGG	-	tig0003589:51964-51983	None:intergenic	45.0%
	AGCAAAATGAGCAAGAGTCC+TGG	+	tig0003589:52052-52071	Msa1339940:CDS	45.0%
	AATCTTGGCGATAAGGCCAA+AGG	+	tig0003589:52085-52104	Msa1339940:CDS	45.0%
!	ATGTTTGGAACTGCGGTGAT+CGG	+	tig0003589:52320-52339	Msa1339940:intron	45.0%
	AAATGTACCGTACCAGACTC+CGG	+	tig0003589:53043-53062	Msa1339940:CDS	45.0%
	ACTGGGATTACTGGATGCAT+TGG	+	tig0003589:53210-53229	Msa1339940:CDS	45.0%
	TGGTATGTGCAAGGCAACAT+TGG	-	tig0003589:53319-53338	None:intergenic	45.0%
	CGATCTTGTTGGTATGTGCA+AGG	-	tig0003589:53328-53347	None:intergenic	45.0%
!	TCGATAACCAAGTTGACTGC+TGG	+	tig0003589:53345-53364	Msa1339940:CDS	45.0%
	GGTCAATGAAGCTTCAAGGA+AGG	-	tig0003589:53388-53407	None:intergenic	45.0%
!	GAAGCATAGCTTGTCACTCA+AGG	+	tig0003589:53658-53677	Msa1339940:CDS	45.0%
	AGCTTGTCACTCAAGGAAAC+TGG	+	tig0003589:53665-53684	Msa1339940:CDS	45.0%
!!	AAGGAAACTGGTGTCACCAT+TGG	+	tig0003589:53677-53696	Msa1339940:CDS	45.0%
	AAATGCATGCTGAGCACCAA+TGG	-	tig0003589:53696-53715	None:intergenic	45.0%
	CGAGCCTTTAGCAATGTTTC+AGG	-	tig0003589:53722-53741	None:intergenic	45.0%
	AAAGGCTCGCTTTGACAGTT+CGG	+	tig0003589:53733-53752	Msa1339940:CDS	45.0%
	TTTGACAGTTCGGGCAAAGT+AGG	+	tig0003589:53743-53762	Msa1339940:CDS	45.0%
	GTAGGTGCTCTCATTCAACA+AGG	+	tig0003589:53761-53780	Msa1339940:CDS	45.0%
	AGATTAGGGTCTTAGAGCCA+TGG	-	tig0003589:53870-53889	None:intergenic	45.0%
	TAAGACCCTAATCTATGCCC+AGG	+	tig0003589:53876-53895	Msa1339940:exon	45.0%
	AACTGAGAAGTTGCTGGATG+AGG	+	tig0003589:53917-53936	Msa1339940:three_prime_UTR	45.0%
	TTTATTGGGAGGGAAAGGGA+AGG	-	tig0003589:51964-51983	None:intergenic	45.0%
	AGCAAAATGAGCAAGAGTCC+TGG	+	tig0003589:52052-52071	Msa1339940:CDS	45.0%
	AATCTTGGCGATAAGGCCAA+AGG	+	tig0003589:52085-52104	Msa1339940:CDS	45.0%
!	ATGTTTGGAACTGCGGTGAT+CGG	+	tig0003589:52320-52339	Msa1339940:intron	45.0%
	AAATGTACCGTACCAGACTC+CGG	+	tig0003589:53043-53062	Msa1339940:CDS	45.0%
	ACTGGGATTACTGGATGCAT+TGG	+	tig0003589:53210-53229	Msa1339940:CDS	45.0%
	TGGTATGTGCAAGGCAACAT+TGG	-	tig0003589:53319-53338	None:intergenic	45.0%
	CGATCTTGTTGGTATGTGCA+AGG	-	tig0003589:53328-53347	None:intergenic	45.0%
!	TCGATAACCAAGTTGACTGC+TGG	+	tig0003589:53345-53364	Msa1339940:CDS	45.0%
	GGTCAATGAAGCTTCAAGGA+AGG	-	tig0003589:53388-53407	None:intergenic	45.0%
!	GAAGCATAGCTTGTCACTCA+AGG	+	tig0003589:53658-53677	Msa1339940:CDS	45.0%
	AGCTTGTCACTCAAGGAAAC+TGG	+	tig0003589:53665-53684	Msa1339940:CDS	45.0%
!!	AAGGAAACTGGTGTCACCAT+TGG	+	tig0003589:53677-53696	Msa1339940:CDS	45.0%
	AAATGCATGCTGAGCACCAA+TGG	-	tig0003589:53696-53715	None:intergenic	45.0%
	CGAGCCTTTAGCAATGTTTC+AGG	-	tig0003589:53722-53741	None:intergenic	45.0%
	AAAGGCTCGCTTTGACAGTT+CGG	+	tig0003589:53733-53752	Msa1339940:CDS	45.0%
	TTTGACAGTTCGGGCAAAGT+AGG	+	tig0003589:53743-53762	Msa1339940:CDS	45.0%
	GTAGGTGCTCTCATTCAACA+AGG	+	tig0003589:53761-53780	Msa1339940:CDS	45.0%
	AGATTAGGGTCTTAGAGCCA+TGG	-	tig0003589:53870-53889	None:intergenic	45.0%
	TAAGACCCTAATCTATGCCC+AGG	+	tig0003589:53876-53895	Msa1339940:exon	45.0%
	AACTGAGAAGTTGCTGGATG+AGG	+	tig0003589:53917-53936	Msa1339940:three_prime_UTR	45.0%
	CAAGAATGAGAAGGCTACCG+CGG	+	tig0003589:52362-52381	Msa1339940:intron	50.0%
	TAAGCCTCTGTTTGGATCCG+CGG	-	tig0003589:52382-52401	None:intergenic	50.0%
	ACTACAGTCAGACATGCTGC+AGG	-	tig0003589:52963-52982	None:intergenic	50.0%
	AATGTACCGTACCAGACTCC+GGG	+	tig0003589:53044-53063	Msa1339940:CDS	50.0%
	CAGGGTCATATGCTCCATCT+TGG	-	tig0003589:53248-53267	None:intergenic	50.0%
	GGAACAAGCATTCTGTCCCT+AGG	+	tig0003589:53291-53310	Msa1339940:CDS	50.0%
!!	CAAGGCAACATTGGCTCCTA+GGG	-	tig0003589:53310-53329	None:intergenic	50.0%
!!	ACCAAGTTGACTGCTGGCTT+CGG	+	tig0003589:53351-53370	Msa1339940:CDS	50.0%
	AGTAAACCCCCTAACCCAGA+CGG	+	tig0003589:53619-53638	Msa1339940:CDS	50.0%
	TTGTGTTGCAATGGCCGTCT+GGG	-	tig0003589:53636-53655	None:intergenic	50.0%
	AAGGCTCGCTTTGACAGTTC+GGG	+	tig0003589:53734-53753	Msa1339940:CDS	50.0%
	TGTAACTATGGCCGGCGAAA+TGG	+	tig0003589:53802-53821	Msa1339940:CDS	50.0%
!!	ATGGCCGGCGAAATGGATTT+TGG	+	tig0003589:53809-53828	Msa1339940:CDS	50.0%
!!	TGGCCGGCGAAATGGATTTT+GGG	+	tig0003589:53810-53829	Msa1339940:CDS	50.0%
	TCCAAAGGTTGGAGTCTCCA+TGG	+	tig0003589:53850-53869	Msa1339940:CDS	50.0%
	CAAGAATGAGAAGGCTACCG+CGG	+	tig0003589:52362-52381	Msa1339940:intron	50.0%
	TAAGCCTCTGTTTGGATCCG+CGG	-	tig0003589:52382-52401	None:intergenic	50.0%
	ACTACAGTCAGACATGCTGC+AGG	-	tig0003589:52963-52982	None:intergenic	50.0%
	AATGTACCGTACCAGACTCC+GGG	+	tig0003589:53044-53063	Msa1339940:CDS	50.0%
	CAGGGTCATATGCTCCATCT+TGG	-	tig0003589:53248-53267	None:intergenic	50.0%
	GGAACAAGCATTCTGTCCCT+AGG	+	tig0003589:53291-53310	Msa1339940:CDS	50.0%
!!	CAAGGCAACATTGGCTCCTA+GGG	-	tig0003589:53310-53329	None:intergenic	50.0%
!!	ACCAAGTTGACTGCTGGCTT+CGG	+	tig0003589:53351-53370	Msa1339940:CDS	50.0%
	AGTAAACCCCCTAACCCAGA+CGG	+	tig0003589:53619-53638	Msa1339940:CDS	50.0%
	TTGTGTTGCAATGGCCGTCT+GGG	-	tig0003589:53636-53655	None:intergenic	50.0%
	AAGGCTCGCTTTGACAGTTC+GGG	+	tig0003589:53734-53753	Msa1339940:CDS	50.0%
	TGTAACTATGGCCGGCGAAA+TGG	+	tig0003589:53802-53821	Msa1339940:CDS	50.0%
!!	ATGGCCGGCGAAATGGATTT+TGG	+	tig0003589:53809-53828	Msa1339940:CDS	50.0%
!!	TGGCCGGCGAAATGGATTTT+GGG	+	tig0003589:53810-53829	Msa1339940:CDS	50.0%
	TCCAAAGGTTGGAGTCTCCA+TGG	+	tig0003589:53850-53869	Msa1339940:CDS	50.0%
	GGAGGGAAAGGGAAGGCAAA+GGG	-	tig0003589:51957-51976	None:intergenic	55.0%
	TACCTTCCCGGAGTCTGGTA+CGG	-	tig0003589:53053-53072	None:intergenic	55.0%
	AATGGTACCTTCCCGGAGTC+TGG	-	tig0003589:53058-53077	None:intergenic	55.0%
!!	GCAAGGCAACATTGGCTCCT+AGG	-	tig0003589:53311-53330	None:intergenic	55.0%
	TGCAATGGCCGTCTGGGTTA+GGG	-	tig0003589:53630-53649	None:intergenic	55.0%
	TTGCAATGGCCGTCTGGGTT+AGG	-	tig0003589:53631-53650	None:intergenic	55.0%
	CTTGTGTTGCAATGGCCGTC+TGG	-	tig0003589:53637-53656	None:intergenic	55.0%
!!	GGCCGGCGAAATGGATTTTG+GGG	+	tig0003589:53811-53830	Msa1339940:CDS	55.0%
	GGCCCCAAAATCCATTTCGC+CGG	-	tig0003589:53816-53835	None:intergenic	55.0%
	GCCATGGAGACTCCAACCTT+TGG	-	tig0003589:53854-53873	None:intergenic	55.0%
	GGAGGGAAAGGGAAGGCAAA+GGG	-	tig0003589:51957-51976	None:intergenic	55.0%
	TACCTTCCCGGAGTCTGGTA+CGG	-	tig0003589:53053-53072	None:intergenic	55.0%
	AATGGTACCTTCCCGGAGTC+TGG	-	tig0003589:53058-53077	None:intergenic	55.0%
!!	GCAAGGCAACATTGGCTCCT+AGG	-	tig0003589:53311-53330	None:intergenic	55.0%
	TGCAATGGCCGTCTGGGTTA+GGG	-	tig0003589:53630-53649	None:intergenic	55.0%
	TTGCAATGGCCGTCTGGGTT+AGG	-	tig0003589:53631-53650	None:intergenic	55.0%
	CTTGTGTTGCAATGGCCGTC+TGG	-	tig0003589:53637-53656	None:intergenic	55.0%
!!	GGCCGGCGAAATGGATTTTG+GGG	+	tig0003589:53811-53830	Msa1339940:CDS	55.0%
	GGCCCCAAAATCCATTTCGC+CGG	-	tig0003589:53816-53835	None:intergenic	55.0%
	GCCATGGAGACTCCAACCTT+TGG	-	tig0003589:53854-53873	None:intergenic	55.0%
	GGGAGGGAAAGGGAAGGCAA+AGG	-	tig0003589:51958-51977	None:intergenic	60.0%
	GCTACCGCGGATCCAAACAG+AGG	+	tig0003589:52375-52394	Msa1339940:intron	60.0%
	TACCGTACCAGACTCCGGGA+AGG	+	tig0003589:53048-53067	Msa1339940:CDS	60.0%
	GCCGAAGCCAGCAGTCAACT+TGG	-	tig0003589:53355-53374	None:intergenic	60.0%
!	CAATGGCCGTCTGGGTTAGG+GGG	-	tig0003589:53628-53647	None:intergenic	60.0%
!	GCAATGGCCGTCTGGGTTAG+GGG	-	tig0003589:53629-53648	None:intergenic	60.0%
	GGGAGGGAAAGGGAAGGCAA+AGG	-	tig0003589:51958-51977	None:intergenic	60.0%
	GCTACCGCGGATCCAAACAG+AGG	+	tig0003589:52375-52394	Msa1339940:intron	60.0%
	TACCGTACCAGACTCCGGGA+AGG	+	tig0003589:53048-53067	Msa1339940:CDS	60.0%
	GCCGAAGCCAGCAGTCAACT+TGG	-	tig0003589:53355-53374	None:intergenic	60.0%
!	CAATGGCCGTCTGGGTTAGG+GGG	-	tig0003589:53628-53647	None:intergenic	60.0%
!	GCAATGGCCGTCTGGGTTAG+GGG	-	tig0003589:53629-53648	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
tig0003589	gene	51854	54259	51854	ID=Msa1339940;Name=Msa1339940
tig0003589	mRNA	51854	54259	51854	ID=Msa1339940-mRNA-1;Parent=Msa1339940;Name=Msa1339940-mRNA-1;_AED=0.10;_eAED=0.10;_QI=135\|1\|1\|1\|1\|1\|5\|373\|267
tig0003589	exon	51854	52106	51854	ID=Msa1339940-mRNA-1:exon:2309;Parent=Msa1339940-mRNA-1
tig0003589	exon	52209	52295	52209	ID=Msa1339940-mRNA-1:exon:2310;Parent=Msa1339940-mRNA-1
tig0003589	exon	53008	53069	53008	ID=Msa1339940-mRNA-1:exon:2311;Parent=Msa1339940-mRNA-1
tig0003589	exon	53183	53409	53183	ID=Msa1339940-mRNA-1:exon:2312;Parent=Msa1339940-mRNA-1
tig0003589	exon	53577	54259	53577	ID=Msa1339940-mRNA-1:exon:2313;Parent=Msa1339940-mRNA-1
tig0003589	five_prime_UTR	51854	51988	51854	ID=Msa1339940-mRNA-1:five_prime_utr;Parent=Msa1339940-mRNA-1
tig0003589	CDS	51989	52106	51989	ID=Msa1339940-mRNA-1:cds;Parent=Msa1339940-mRNA-1
tig0003589	CDS	52209	52295	52209	ID=Msa1339940-mRNA-1:cds;Parent=Msa1339940-mRNA-1
tig0003589	CDS	53008	53069	53008	ID=Msa1339940-mRNA-1:cds;Parent=Msa1339940-mRNA-1
tig0003589	CDS	53183	53409	53183	ID=Msa1339940-mRNA-1:cds;Parent=Msa1339940-mRNA-1
tig0003589	CDS	53577	53886	53577	ID=Msa1339940-mRNA-1:cds;Parent=Msa1339940-mRNA-1
tig0003589	three_prime_UTR	53887	54259	53887	ID=Msa1339940-mRNA-1:three_prime_utr;Parent=Msa1339940-mRNA-1

Gene Sequence

>Msa1339940

ATGTTAACAAATCACAAAAAGGTGAAACTCAAACAACAATTTTTATTTCTTAGCATTCATTTTAGCAAAATGAGCAAGAGTCCTGGTGTATATTCTAATCTTGGCGATAAGGCCAAAGATTGTCTTTACAAGGACTATGTTCAACAATCACCTATTCACTTTCACTACCAATTCATGGATTGGAATGCAGGCTTCTCTTGTAAAGTTCAAGAAATTCTACCTGGATTCAGGACTGTTTTCAAATGTACCGTACCAGACTCCGGGAAGGTGGAACTACAGTACTTGAATAGATTCACTGGGATTACTGGATGCATTGGATTATTAGGAAACCAAGATGGAGCATATGACCCTGTTGTAAAATTATCAGGCCTTTTAGGAACAAGCATTCTGTCCCTAGGAGCCAATGTTGCCTTGCACATACCAACAAGATCGATAACCAAGTTGACTGCTGGCTTCGGCTTAAACACTGCCTTCCTTGAAGCTTCATTGACCTTGCATGACAGCTTTGACACTCTAAAAGCGACCATTTATCATGAAGTAAACCCCCTAACCCAGACGGCCATTGCAACACAAGTGAAGCATAGCTTGTCACTCAAGGAAACTGGTGTCACCATTGGTGCTCAGCATGCATTTTTTCCTGAAACATTGCTAAAGGCTCGCTTTGACAGTTCGGGCAAAGTAGGTGCTCTCATTCAACAAGGATTTTGGCAGAGATTTTTTGTAACTATGGCCGGCGAAATGGATTTTGGGGCCACCGATGATAAGATTCCAAAGGTTGGAGTCTCCATGGCTCTAAGACCCTAA

Protein sequence

>Msa1339940

MLTNHKKVKLKQQFLFLSIHFSKMSKSPGVYSNLGDKAKDCLYKDYVQQSPIHFHYQFMDWNAGFSCKVQEILPGFRTVFKCTVPDSGKVELQYLNRFTGITGCIGLLGNQDGAYDPVVKLSGLLGTSILSLGANVALHIPTRSITKLTAGFGLNTAFLEASLTLHDSFDTLKATIYHEVNPLTQTAIATQVKHSLSLKETGVTIGAQHAFFPETLLKARFDSSGKVGALIQQGFWQRFFVTMAGEMDFGATDDKIPKVGVSMALRP*