AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1210130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210130 MtrunA17_Chr4g0059361 97.340 188 4 1 1 188 1 187 2.69e-134 373
Msa1210130 MtrunA17_Chr3g0117971 54.974 191 75 3 1 188 1 183 2.41e-63 193
Msa1210130 MtrunA17_Chr5g0414281 42.328 189 87 4 1 186 1 170 6.96e-40 133
Msa1210130 MtrunA17_Chr4g0054191 38.624 189 94 4 1 188 1 168 6.40e-35 120
Msa1210130 MtrunA17_Chr8g0364591 38.378 185 99 4 1 185 1 170 4.13e-30 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210130 AT5G62900.1 46.809 188 73 4 1 188 1 161 9.32e-48 153
Msa1210130 AT5G50090.1 44.444 189 73 4 1 188 1 158 6.64e-42 139
Msa1210130 AT5G50090.2 46.277 188 65 5 1 188 1 152 2.77e-41 137
Msa1210130 AT1G60010.1 41.489 188 95 4 1 188 1 173 1.26e-40 135
Msa1210130 AT5G50090.3 52.500 120 43 1 1 120 1 106 1.13e-35 122
Msa1210130 AT1G10530.1 35.638 188 99 3 1 188 1 166 8.72e-35 120
Msa1210130 AT5G67620.1 32.195 205 98 7 1 188 1 181 1.06e-23 92.8

Find 109 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTAATCACTTTAAATT+TGG 0.165381 8_1:+68888594 Msa1210130:three_prime_UTR
GAAGGAGAAGTAGTTGAAAA+AGG 0.168731 8_1:-68888837 Msa1210140:CDS
TAAGGGCAAAATTCTTAATT+AGG 0.175331 8_1:-68888618 None:intergenic
TGCATTTCATCCCTGTAATT+AGG 0.175438 8_1:+68888517 Msa1210130:three_prime_UTR
ATCTGTGGGAAATTAAATTA+AGG 0.228969 8_1:+68888486 Msa1210130:three_prime_UTR
GTTTCGTCTTCTCATGTTTC+CGG 0.232857 8_1:+68889214 Msa1210130:three_prime_UTR
ACTTGTTGGGATTTAGAAAT+TGG 0.236727 8_1:+68889324 Msa1210130:three_prime_UTR
GCATTTCATCCCTGTAATTA+GGG 0.241125 8_1:+68888518 Msa1210130:three_prime_UTR
TTAAAGTGATTAATAATTAC+AGG 0.275595 8_1:-68888588 None:intergenic
CCTCCTTCACTTCACTTCTC+TGG 0.278732 8_1:+68888712 Msa1210130:three_prime_UTR
ACGTGTCTCAGATTTCATTA+AGG 0.285739 8_1:-68888636 None:intergenic
GAGGAAGGATATAAATAATA+AGG 0.287758 8_1:-68887229 None:intergenic
GACGATTTCGATTCTGATTC+CGG 0.302020 8_1:+68889155 Msa1210130:three_prime_UTR
AACCTTTCTTCTTTGCCATT+TGG 0.302263 8_1:-68887330 None:intergenic
ACAAAAGTCAAATCAGATTA+AGG 0.303462 8_1:+68887779 Msa1210130:CDS
TTCCACCGCCGGAGGTTGTT+GGG 0.305016 8_1:-68889093 Msa1210140:intron
TTCAAATGACCCCTAATTAC+AGG 0.309823 8_1:-68888528 None:intergenic
AATGACCCAAATGCAAAATA+TGG 0.311728 8_1:-68889280 Msa1210140:CDS
TAATAATTACAGGGATGAAA+TGG 0.325643 8_1:-68888578 None:intergenic
CGTGTCTCAGATTTCATTAA+GGG 0.327473 8_1:-68888635 None:intergenic
TTTCCACCGCCGGAGGTTGT+TGG 0.355496 8_1:-68889094 Msa1210140:intron
AGATTTACCTTGTTATCTTC+AGG 0.363890 8_1:-68887837 None:intergenic
ACATTGGAAAATTCTAGTTC+AGG 0.365363 8_1:-68888920 Msa1210140:intron
CGGCACGGTGGCGGCGGTGG+TGG 0.368020 8_1:+68889234 Msa1210130:three_prime_UTR
TTAATGATAAAACAGCTAAT+AGG 0.376595 8_1:+68887808 Msa1210130:CDS
GGTGGCGGCGGTGGTGGTGA+TGG 0.390206 8_1:+68889240 Msa1210130:three_prime_UTR
TTCCGGCACGGTGGCGGCGG+TGG 0.401783 8_1:+68889231 Msa1210130:three_prime_UTR
ATCACTTCACTAGCAGTAAC+TGG 0.406024 8_1:-68887360 None:intergenic
ATTGTTTCTTGTGTCAAGTA+AGG 0.406562 8_1:+68889300 Msa1210130:three_prime_UTR
CGGTCGGCGGTTTCCACCGC+CGG 0.413698 8_1:-68889104 Msa1210140:CDS
ACAACAACAACGTCATCTTC+TGG 0.415357 8_1:+68888948 Msa1210130:three_prime_UTR
AGAAGAGCAACATAGTGATC+AGG 0.427746 8_1:-68887393 None:intergenic
AATAATTACAGGGATGAAAT+GGG 0.438337 8_1:-68888577 None:intergenic
CATTGGAAAATTCTAGTTCA+GGG 0.442928 8_1:-68888919 Msa1210140:intron
CAACAACAACGTCATCTTCT+GGG 0.443210 8_1:+68888949 Msa1210130:three_prime_UTR
TCTGTGGGAAATTAAATTAA+GGG 0.443932 8_1:+68888487 Msa1210130:three_prime_UTR
CTACAAGTAAGTGAAGGATC+AGG 0.455787 8_1:-68889192 Msa1210140:CDS
CAGAGGTTACAAAGGGTATG+TGG 0.456771 8_1:+68887709 Msa1210130:intron
TCATGTTTCCGGCACGGTGG+CGG 0.467660 8_1:+68889225 Msa1210130:three_prime_UTR
AGATGAACATAGGGGTAGAC+AGG 0.468639 8_1:-68888676 None:intergenic
TTCAGTGATGCTTTGTAAAG+AGG 0.477664 8_1:-68888397 None:intergenic
GCAAAGAAGAAAGGTTGTAT+TGG 0.478560 8_1:+68887337 Msa1210130:CDS
TGTCAAGTAAGGAACTTGTT+GGG 0.479149 8_1:+68889311 Msa1210130:three_prime_UTR
TCCCCAACAACCTCCGGCGG+TGG 0.479641 8_1:+68889091 Msa1210130:three_prime_UTR
GTGTCAAGTAAGGAACTTGT+TGG 0.482790 8_1:+68889310 Msa1210130:three_prime_UTR
CACCACCGCCGCCACCGTGC+CGG 0.484275 8_1:-68889233 Msa1210140:CDS
ATGGGAGGATTAGTAAGCTC+AGG 0.484705 8_1:-68888559 None:intergenic
GAAATCGTCGGAGTGAGCTT+AGG 0.485708 8_1:-68889141 Msa1210140:CDS
AGGACAAAAGCAACAACAAA+TGG 0.492369 8_1:+68888339 Msa1210130:CDS
TGTTTCCGGCACGGTGGCGG+CGG 0.505907 8_1:+68889228 Msa1210130:three_prime_UTR
TTTGTGTCCCCAACAACCTC+CGG 0.512164 8_1:+68889085 Msa1210130:three_prime_UTR
TCAGTGATGCTTTGTAAAGA+GGG 0.514695 8_1:-68888396 None:intergenic
GTTGCTATAAATATTCTAGT+AGG 0.517379 8_1:+68887179 Msa1210130:five_prime_UTR
TCCACCGCCGGAGGTTGTTG+GGG 0.517578 8_1:-68889092 Msa1210140:intron
AACCAAATGGCAAAGAAGAA+AGG 0.522282 8_1:+68887328 Msa1210130:CDS
CCAGAGAAGTGAAGTGAAGG+AGG 0.526333 8_1:-68888712 None:intergenic
TACTCACATGTGATGACTCA+AGG 0.527011 8_1:+68888448 Msa1210130:three_prime_UTR
TTTGACTCTTTGAAAACTAG+TGG 0.528818 8_1:+68887142 Msa1210130:five_prime_UTR
TTGGTTTCAGAGGTTACAAA+GGG 0.536135 8_1:+68887702 Msa1210130:intron
TCAGGGAGGGAACTCAGAAC+CGG 0.537465 8_1:-68889174 Msa1210140:CDS
GATTCAAAACTCATATCAGC+TGG 0.538326 8_1:-68888424 None:intergenic
TTGATGAGGAAATCAATTGA+AGG 0.541033 8_1:-68888855 Msa1210140:CDS
ACTAGTGGTAAGAGAGTGAG+TGG 0.541714 8_1:+68887157 Msa1210130:five_prime_UTR
CTTGTGATACAGCAACCAAA+TGG 0.541988 8_1:+68887315 Msa1210130:CDS
ACATGATTGCTTAGATCTGT+GGG 0.557047 8_1:+68888472 Msa1210130:three_prime_UTR
GACATGATTGCTTAGATCTG+TGG 0.558047 8_1:+68888471 Msa1210130:three_prime_UTR
TTTCTTCTTCAAGAAGAGGA+AGG 0.558868 8_1:-68887244 None:intergenic
GTCTTCTCATGTTTCCGGCA+CGG 0.562757 8_1:+68889219 Msa1210130:three_prime_UTR
GTGAGCTTAGGTAGACGGAA+AGG 0.568945 8_1:-68889129 Msa1210140:CDS
TGAGCTTAGGTAGACGGAAA+GGG 0.574700 8_1:-68889128 Msa1210140:CDS
GAAGAGCAACATAGTGATCA+GGG 0.575247 8_1:-68887392 None:intergenic
CCAAGCAAAAGTGTATCTGT+TGG 0.576593 8_1:-68887537 None:intergenic
TACAAGTAAGTGAAGGATCA+GGG 0.577021 8_1:-68889191 Msa1210140:CDS
GTTCCAGAGAAGTGAAGTGA+AGG 0.577749 8_1:-68888715 None:intergenic
CCAAATGCAAAATATGGCTA+CGG 0.579931 8_1:-68889274 Msa1210140:CDS
TTTGGTTTCAGAGGTTACAA+AGG 0.584060 8_1:+68887701 Msa1210130:intron
AGAGGTTACAAAGGGTATGT+GGG 0.585748 8_1:+68887710 Msa1210130:intron
TCGGAGTGAGCTTAGGTAGA+CGG 0.588237 8_1:-68889134 Msa1210140:CDS
AGACGGAAAGGGACGGTCGG+CGG 0.591139 8_1:-68889117 Msa1210140:CDS
TAAAGTGATTAATAATTACA+GGG 0.593348 8_1:-68888587 None:intergenic
TATAGACTCATCTCAGCTCA+AGG 0.593800 8_1:+68887567 Msa1210130:CDS
AAATAATAAGGAAGATGCAA+CGG 0.598797 8_1:-68887217 None:intergenic
TCAAATGACCCCTAATTACA+GGG 0.604479 8_1:-68888527 None:intergenic
TGGATCTATCCACAACCACA+AGG 0.605488 8_1:-68888770 None:intergenic
GTCTGAACCTGAAGATAACA+AGG 0.608807 8_1:+68887830 Msa1210130:CDS
TGAAGCACTGCATATTGATG+AGG 0.609628 8_1:-68888869 Msa1210140:CDS
CTTAGGTAGACGGAAAGGGA+CGG 0.618125 8_1:-68889124 Msa1210140:CDS
AGTCAAATCAGATTAAGGAA+AGG 0.621653 8_1:+68887784 Msa1210130:CDS
CATTTCATCCCTGTAATTAG+GGG 0.623909 8_1:+68888519 Msa1210130:three_prime_UTR
CAGAGAAGTGAAGTGAAGGA+GGG 0.625228 8_1:-68888711 None:intergenic
ACTCACATGTGATGACTCAA+GGG 0.627657 8_1:+68888449 Msa1210130:three_prime_UTR
AGTAAGTGAAGGATCAGGGA+GGG 0.629875 8_1:-68889187 Msa1210140:CDS
GTGTCCCCAACAACCTCCGG+CGG 0.630049 8_1:+68889088 Msa1210130:three_prime_UTR
TCGGCGGTTTCCACCGCCGG+AGG 0.630883 8_1:-68889101 Msa1210140:intron
TGGGAGGATTAGTAAGCTCA+GGG 0.635180 8_1:-68888558 None:intergenic
AATCTGAAAGACATGAGTCA+AGG 0.637514 8_1:+68888319 Msa1210130:CDS
GATCTATCCACAACCACAAG+GGG 0.639953 8_1:-68888768 None:intergenic
GGTAGACGGAAAGGGACGGT+CGG 0.642297 8_1:-68889120 Msa1210140:CDS
GATGAACATAGGGGTAGACA+GGG 0.645678 8_1:-68888675 None:intergenic
ACAAAAGCAACAACAAATGG+TGG 0.646145 8_1:+68888342 Msa1210130:CDS
ACGAAACTACAAGTAAGTGA+AGG 0.651561 8_1:-68889198 Msa1210140:CDS
GGAATCAGAATCGAAATCGT+CGG 0.654540 8_1:-68889153 Msa1210140:CDS
GGATCTATCCACAACCACAA+GGG 0.657598 8_1:-68888769 None:intergenic
AATTACAGGGATGAAATGGG+AGG 0.666408 8_1:-68888574 None:intergenic
ATAATAATAAGTCAAGAACA+TGG 0.691937 8_1:+68888370 Msa1210130:CDS
TTCTCATGTTTCCGGCACGG+TGG 0.703341 8_1:+68889222 Msa1210130:three_prime_UTR
AAGTAAGTGAAGGATCAGGG+AGG 0.735147 8_1:-68889188 Msa1210140:CDS
ATGAACATAGGGGTAGACAG+GGG 0.756859 8_1:-68888674 None:intergenic
GTTGTTGGGGACACAAACGA+CGG 0.759292 8_1:-68889079 Msa1210140:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTAATAATAATTTATGAT+TGG + chr8_1:68888275-68888294 Msa1210130:intron 10.0%
!! ATTATTAATCACTTTAAATT+TGG + chr8_1:68888594-68888613 Msa1210130:three_prime_UTR 10.0%
!! GATTAATAATAATTTATGAT+TGG + chr8_1:68888275-68888294 Msa1210130:intron 10.0%
!! ATTATTAATCACTTTAAATT+TGG + chr8_1:68888594-68888613 Msa1210130:three_prime_UTR 10.0%
!! TATAAAGAATCAAAAGAAAA+AGG - chr8_1:68887623-68887642 None:intergenic 15.0%
!!! AGAACAAAATAATCTTTTAA+GGG - chr8_1:68887656-68887675 None:intergenic 15.0%
!!! AAGAACAAAATAATCTTTTA+AGG - chr8_1:68887657-68887676 None:intergenic 15.0%
!!! TACACATTGATTATTTTTTT+TGG + chr8_1:68888031-68888050 Msa1210130:intron 15.0%
!! GATAATGCATAATATATATA+AGG - chr8_1:68888070-68888089 None:intergenic 15.0%
!! TTATGTACATTAACTAATTA+AGG + chr8_1:68888128-68888147 Msa1210130:intron 15.0%
!! TAAAGTGATTAATAATTACA+GGG - chr8_1:68888590-68888609 None:intergenic 15.0%
!! TTAAAGTGATTAATAATTAC+AGG - chr8_1:68888591-68888610 None:intergenic 15.0%
!! AAAAAAAGAAAAGAAAAGAT+TGG + chr8_1:68889378-68889397 Msa1210130:three_prime_UTR 15.0%
!! TATAAAGAATCAAAAGAAAA+AGG - chr8_1:68887623-68887642 None:intergenic 15.0%
!!! AGAACAAAATAATCTTTTAA+GGG - chr8_1:68887656-68887675 None:intergenic 15.0%
!!! AAGAACAAAATAATCTTTTA+AGG - chr8_1:68887657-68887676 None:intergenic 15.0%
!!! TACACATTGATTATTTTTTT+TGG + chr8_1:68888031-68888050 Msa1210130:intron 15.0%
!! GATAATGCATAATATATATA+AGG - chr8_1:68888070-68888089 None:intergenic 15.0%
!! TTATGTACATTAACTAATTA+AGG + chr8_1:68888128-68888147 Msa1210130:intron 15.0%
!! TAAAGTGATTAATAATTACA+GGG - chr8_1:68888590-68888609 None:intergenic 15.0%
!! TTAAAGTGATTAATAATTAC+AGG - chr8_1:68888591-68888610 None:intergenic 15.0%
!! AAAAAAAGAAAAGAAAAGAT+TGG + chr8_1:68889378-68889397 Msa1210130:three_prime_UTR 15.0%
!! TTAATGATAAAACAGCTAAT+AGG + chr8_1:68887808-68887827 Msa1210130:CDS 20.0%
!! CATAATATATATAAGGTTTG+AGG - chr8_1:68888063-68888082 None:intergenic 20.0%
!! ATAATAATAAGTCAAGAACA+TGG + chr8_1:68888370-68888389 Msa1210130:CDS 20.0%
!!! AACAATTTTTTACATCACTA+AGG + chr8_1:68888990-68889009 Msa1210130:three_prime_UTR 20.0%
!! TTAATGATAAAACAGCTAAT+AGG + chr8_1:68887808-68887827 Msa1210130:CDS 20.0%
!! CATAATATATATAAGGTTTG+AGG - chr8_1:68888063-68888082 None:intergenic 20.0%
!! ATAATAATAAGTCAAGAACA+TGG + chr8_1:68888370-68888389 Msa1210130:CDS 20.0%
!!! AACAATTTTTTACATCACTA+AGG + chr8_1:68888990-68889009 Msa1210130:three_prime_UTR 20.0%
! GTTGCTATAAATATTCTAGT+AGG + chr8_1:68887179-68887198 Msa1210130:five_prime_UTR 25.0%
! AAATAATAAGGAAGATGCAA+CGG - chr8_1:68887220-68887239 None:intergenic 25.0%
! GAGGAAGGATATAAATAATA+AGG - chr8_1:68887232-68887251 None:intergenic 25.0%
! AAAAAGAAGTGAGAGATAAT+GGG + chr8_1:68887264-68887283 Msa1210130:exon 25.0%
!!! TTGAGTCTTTATGTTGTTTT+TGG + chr8_1:68887683-68887702 Msa1210130:intron 25.0%
! ACAAAAGTCAAATCAGATTA+AGG + chr8_1:68887779-68887798 Msa1210130:CDS 25.0%
! TATAGTTACTGTTCATAAGA+AGG - chr8_1:68887985-68888004 None:intergenic 25.0%
! TACATTAACTAATTAAGGTC+TGG + chr8_1:68888133-68888152 Msa1210130:intron 25.0%
!! GGTCTGGTTATAAATTTTAT+TGG + chr8_1:68888149-68888168 Msa1210130:intron 25.0%
!!! ATGATTGGTTCATTATTTTC+AGG + chr8_1:68888290-68888309 Msa1210130:intron 25.0%
! ATCTGTGGGAAATTAAATTA+AGG + chr8_1:68888486-68888505 Msa1210130:three_prime_UTR 25.0%
! TCTGTGGGAAATTAAATTAA+GGG + chr8_1:68888487-68888506 Msa1210130:three_prime_UTR 25.0%
! AATAATTACAGGGATGAAAT+GGG - chr8_1:68888580-68888599 None:intergenic 25.0%
! TAATAATTACAGGGATGAAA+TGG - chr8_1:68888581-68888600 None:intergenic 25.0%
! TAAGGGCAAAATTCTTAATT+AGG - chr8_1:68888621-68888640 None:intergenic 25.0%
!!! ATTTTGAGAAGATGAACATA+GGG - chr8_1:68888688-68888707 None:intergenic 25.0%
!!! TTTTTTAAAGTTCTTTTGGG+AGG - chr8_1:68888748-68888767 None:intergenic 25.0%
!!! GGGTTTTTTAAAGTTCTTTT+GGG - chr8_1:68888751-68888770 None:intergenic 25.0%
!!! AAAACCATGTGTTTTTTTGT+AGG - chr8_1:68888798-68888817 Msa1210140:CDS 25.0%
!!! GAAATTGGTGTTTTAGAAAT+TGG + chr8_1:68889339-68889358 Msa1210130:three_prime_UTR 25.0%
! GTTGCTATAAATATTCTAGT+AGG + chr8_1:68887179-68887198 Msa1210130:five_prime_UTR 25.0%
! AAATAATAAGGAAGATGCAA+CGG - chr8_1:68887220-68887239 None:intergenic 25.0%
! GAGGAAGGATATAAATAATA+AGG - chr8_1:68887232-68887251 None:intergenic 25.0%
! AAAAAGAAGTGAGAGATAAT+GGG + chr8_1:68887264-68887283 Msa1210130:exon 25.0%
!!! TTGAGTCTTTATGTTGTTTT+TGG + chr8_1:68887683-68887702 Msa1210130:intron 25.0%
! ACAAAAGTCAAATCAGATTA+AGG + chr8_1:68887779-68887798 Msa1210130:CDS 25.0%
! TATAGTTACTGTTCATAAGA+AGG - chr8_1:68887985-68888004 None:intergenic 25.0%
! TACATTAACTAATTAAGGTC+TGG + chr8_1:68888133-68888152 Msa1210130:intron 25.0%
!! GGTCTGGTTATAAATTTTAT+TGG + chr8_1:68888149-68888168 Msa1210130:intron 25.0%
!!! ATGATTGGTTCATTATTTTC+AGG + chr8_1:68888290-68888309 Msa1210130:intron 25.0%
! ATCTGTGGGAAATTAAATTA+AGG + chr8_1:68888486-68888505 Msa1210130:three_prime_UTR 25.0%
! TCTGTGGGAAATTAAATTAA+GGG + chr8_1:68888487-68888506 Msa1210130:three_prime_UTR 25.0%
! AATAATTACAGGGATGAAAT+GGG - chr8_1:68888580-68888599 None:intergenic 25.0%
! TAATAATTACAGGGATGAAA+TGG - chr8_1:68888581-68888600 None:intergenic 25.0%
! TAAGGGCAAAATTCTTAATT+AGG - chr8_1:68888621-68888640 None:intergenic 25.0%
!!! ATTTTGAGAAGATGAACATA+GGG - chr8_1:68888688-68888707 None:intergenic 25.0%
!!! TTTTTTAAAGTTCTTTTGGG+AGG - chr8_1:68888748-68888767 None:intergenic 25.0%
!!! GGGTTTTTTAAAGTTCTTTT+GGG - chr8_1:68888751-68888770 None:intergenic 25.0%
!!! AAAACCATGTGTTTTTTTGT+AGG - chr8_1:68888798-68888817 Msa1210140:CDS 25.0%
!!! GAAATTGGTGTTTTAGAAAT+TGG + chr8_1:68889339-68889358 Msa1210130:three_prime_UTR 25.0%
! TTTGACTCTTTGAAAACTAG+TGG + chr8_1:68887142-68887161 Msa1210130:five_prime_UTR 30.0%
! TCTTTTTCTTCTTCAAGAAG+AGG - chr8_1:68887251-68887270 None:intergenic 30.0%
GAAAAAGAAGTGAGAGATAA+TGG + chr8_1:68887263-68887282 Msa1210130:exon 30.0%
!!! TTTTGAAGTGCATAATGTTG+TGG - chr8_1:68887424-68887443 None:intergenic 30.0%
!!! TATGTTGTTTTTGGTTTCAG+AGG + chr8_1:68887692-68887711 Msa1210130:intron 30.0%
AGTCAAATCAGATTAAGGAA+AGG + chr8_1:68887784-68887803 Msa1210130:CDS 30.0%
! AGATTTACCTTGTTATCTTC+AGG - chr8_1:68887840-68887859 None:intergenic 30.0%
AGATTCAATCAACATGGATT+TGG - chr8_1:68887895-68887914 None:intergenic 30.0%
!! TAAGAGAGAGATTTGTTGAA+TGG + chr8_1:68888251-68888270 Msa1210130:intron 30.0%
!! TTTTGAGAAGATGAACATAG+GGG - chr8_1:68888687-68888706 None:intergenic 30.0%
!! GATTTTGAGAAGATGAACAT+AGG - chr8_1:68888689-68888708 None:intergenic 30.0%
!!! GGGGTTTTTTAAAGTTCTTT+TGG - chr8_1:68888752-68888771 None:intergenic 30.0%
!!! CATGTGTTTTTTTGTAGGTA+TGG - chr8_1:68888793-68888812 None:intergenic 30.0%
CATACCTACAAAAAAACACA+TGG + chr8_1:68888791-68888810 Msa1210130:three_prime_UTR 30.0%
AAGGAGAAGTAGTTGAAAAA+GGG - chr8_1:68888839-68888858 Msa1210140:CDS 30.0%
TTGATGAGGAAATCAATTGA+AGG - chr8_1:68888858-68888877 Msa1210140:CDS 30.0%
!! CTTCTTCATTTTTCACTTGT+AGG + chr8_1:68888895-68888914 Msa1210130:three_prime_UTR 30.0%
!! CATTGGAAAATTCTAGTTCA+GGG - chr8_1:68888922-68888941 Msa1210140:intron 30.0%
!! ACATTGGAAAATTCTAGTTC+AGG - chr8_1:68888923-68888942 Msa1210140:intron 30.0%
!! GTTGTTGTTGTGTTTTACAT+TGG - chr8_1:68888939-68888958 Msa1210140:intron 30.0%
AATGACCCAAATGCAAAATA+TGG - chr8_1:68889283-68889302 None:intergenic 30.0%
! ATTGTTTCTTGTGTCAAGTA+AGG + chr8_1:68889300-68889319 Msa1210130:three_prime_UTR 30.0%
! ACTTGTTGGGATTTAGAAAT+TGG + chr8_1:68889324-68889343 Msa1210130:three_prime_UTR 30.0%
! TTTGACTCTTTGAAAACTAG+TGG + chr8_1:68887142-68887161 Msa1210130:five_prime_UTR 30.0%
! TCTTTTTCTTCTTCAAGAAG+AGG - chr8_1:68887251-68887270 None:intergenic 30.0%
GAAAAAGAAGTGAGAGATAA+TGG + chr8_1:68887263-68887282 Msa1210130:exon 30.0%
!!! TTTTGAAGTGCATAATGTTG+TGG - chr8_1:68887424-68887443 None:intergenic 30.0%
!!! TATGTTGTTTTTGGTTTCAG+AGG + chr8_1:68887692-68887711 Msa1210130:intron 30.0%
AGTCAAATCAGATTAAGGAA+AGG + chr8_1:68887784-68887803 Msa1210130:CDS 30.0%
! AGATTTACCTTGTTATCTTC+AGG - chr8_1:68887840-68887859 None:intergenic 30.0%
AGATTCAATCAACATGGATT+TGG - chr8_1:68887895-68887914 None:intergenic 30.0%
!! TAAGAGAGAGATTTGTTGAA+TGG + chr8_1:68888251-68888270 Msa1210130:intron 30.0%
!! TTTTGAGAAGATGAACATAG+GGG - chr8_1:68888687-68888706 None:intergenic 30.0%
!! GATTTTGAGAAGATGAACAT+AGG - chr8_1:68888689-68888708 None:intergenic 30.0%
!!! GGGGTTTTTTAAAGTTCTTT+TGG - chr8_1:68888752-68888771 None:intergenic 30.0%
!!! CATGTGTTTTTTTGTAGGTA+TGG - chr8_1:68888793-68888812 None:intergenic 30.0%
CATACCTACAAAAAAACACA+TGG + chr8_1:68888791-68888810 Msa1210130:three_prime_UTR 30.0%
AAGGAGAAGTAGTTGAAAAA+GGG - chr8_1:68888839-68888858 Msa1210140:CDS 30.0%
TTGATGAGGAAATCAATTGA+AGG - chr8_1:68888858-68888877 Msa1210140:CDS 30.0%
!! CTTCTTCATTTTTCACTTGT+AGG + chr8_1:68888895-68888914 Msa1210130:three_prime_UTR 30.0%
!! CATTGGAAAATTCTAGTTCA+GGG - chr8_1:68888922-68888941 Msa1210140:intron 30.0%
!! ACATTGGAAAATTCTAGTTC+AGG - chr8_1:68888923-68888942 Msa1210140:intron 30.0%
!! GTTGTTGTTGTGTTTTACAT+TGG - chr8_1:68888939-68888958 Msa1210140:intron 30.0%
AATGACCCAAATGCAAAATA+TGG - chr8_1:68889283-68889302 None:intergenic 30.0%
! ATTGTTTCTTGTGTCAAGTA+AGG + chr8_1:68889300-68889319 Msa1210130:three_prime_UTR 30.0%
! ACTTGTTGGGATTTAGAAAT+TGG + chr8_1:68889324-68889343 Msa1210130:three_prime_UTR 30.0%
TTTCTTCTTCAAGAAGAGGA+AGG - chr8_1:68887247-68887266 None:intergenic 35.0%
AACCAAATGGCAAAGAAGAA+AGG + chr8_1:68887328-68887347 Msa1210130:CDS 35.0%
AACCTTTCTTCTTTGCCATT+TGG - chr8_1:68887333-68887352 None:intergenic 35.0%
GCAAAGAAGAAAGGTTGTAT+TGG + chr8_1:68887337-68887356 Msa1210130:CDS 35.0%
! TTTGGTTTCAGAGGTTACAA+AGG + chr8_1:68887701-68887720 Msa1210130:intron 35.0%
TTGGTTTCAGAGGTTACAAA+GGG + chr8_1:68887702-68887721 Msa1210130:intron 35.0%
!!! TTTGACTTTTGTGCTGATTC+TGG - chr8_1:68887771-68887790 None:intergenic 35.0%
TCTTGCAGATTCAATCAACA+TGG - chr8_1:68887901-68887920 None:intergenic 35.0%
AGAACATGAATATCTCTCAG+TGG + chr8_1:68887918-68887937 Msa1210130:intron 35.0%
TACTGTTCATAAGAAGGAGT+TGG - chr8_1:68887979-68887998 None:intergenic 35.0%
AATCTGAAAGACATGAGTCA+AGG + chr8_1:68888319-68888338 Msa1210130:CDS 35.0%
AGGACAAAAGCAACAACAAA+TGG + chr8_1:68888339-68888358 Msa1210130:CDS 35.0%
ACAAAAGCAACAACAAATGG+TGG + chr8_1:68888342-68888361 Msa1210130:CDS 35.0%
TCAGTGATGCTTTGTAAAGA+GGG - chr8_1:68888399-68888418 None:intergenic 35.0%
TTCAGTGATGCTTTGTAAAG+AGG - chr8_1:68888400-68888419 None:intergenic 35.0%
GATTCAAAACTCATATCAGC+TGG - chr8_1:68888427-68888446 None:intergenic 35.0%
ACATGATTGCTTAGATCTGT+GGG + chr8_1:68888472-68888491 Msa1210130:three_prime_UTR 35.0%
TGCATTTCATCCCTGTAATT+AGG + chr8_1:68888517-68888536 Msa1210130:three_prime_UTR 35.0%
GCATTTCATCCCTGTAATTA+GGG + chr8_1:68888518-68888537 Msa1210130:three_prime_UTR 35.0%
CATTTCATCCCTGTAATTAG+GGG + chr8_1:68888519-68888538 Msa1210130:three_prime_UTR 35.0%
TCAAATGACCCCTAATTACA+GGG - chr8_1:68888530-68888549 None:intergenic 35.0%
TTCAAATGACCCCTAATTAC+AGG - chr8_1:68888531-68888550 None:intergenic 35.0%
CGTGTCTCAGATTTCATTAA+GGG - chr8_1:68888638-68888657 None:intergenic 35.0%
ACGTGTCTCAGATTTCATTA+AGG - chr8_1:68888639-68888658 None:intergenic 35.0%
!! AAAGTTCTTTTGGGAGGAAA+TGG - chr8_1:68888742-68888761 None:intergenic 35.0%
! GAACTTTAAAAAACCCCTTG+TGG + chr8_1:68888755-68888774 Msa1210130:three_prime_UTR 35.0%
GAAGTAGTTGAAAAAGGGTT+TGG - chr8_1:68888834-68888853 Msa1210140:CDS 35.0%
GAAGGAGAAGTAGTTGAAAA+AGG - chr8_1:68888840-68888859 Msa1210140:CDS 35.0%
TACAAGTAAGTGAAGGATCA+GGG - chr8_1:68889194-68889213 Msa1210140:CDS 35.0%
ACGAAACTACAAGTAAGTGA+AGG - chr8_1:68889201-68889220 Msa1210140:CDS 35.0%
CCAAATGCAAAATATGGCTA+CGG - chr8_1:68889277-68889296 Msa1210140:CDS 35.0%
! CGTAGCCATATTTTGCATTT+GGG + chr8_1:68889275-68889294 Msa1210130:three_prime_UTR 35.0%
! TGTCAAGTAAGGAACTTGTT+GGG + chr8_1:68889311-68889330 Msa1210130:three_prime_UTR 35.0%
TTTCTTCTTCAAGAAGAGGA+AGG - chr8_1:68887247-68887266 None:intergenic 35.0%
AACCAAATGGCAAAGAAGAA+AGG + chr8_1:68887328-68887347 Msa1210130:CDS 35.0%
AACCTTTCTTCTTTGCCATT+TGG - chr8_1:68887333-68887352 None:intergenic 35.0%
GCAAAGAAGAAAGGTTGTAT+TGG + chr8_1:68887337-68887356 Msa1210130:CDS 35.0%
! TTTGGTTTCAGAGGTTACAA+AGG + chr8_1:68887701-68887720 Msa1210130:intron 35.0%
TTGGTTTCAGAGGTTACAAA+GGG + chr8_1:68887702-68887721 Msa1210130:intron 35.0%
!!! TTTGACTTTTGTGCTGATTC+TGG - chr8_1:68887771-68887790 None:intergenic 35.0%
TCTTGCAGATTCAATCAACA+TGG - chr8_1:68887901-68887920 None:intergenic 35.0%
AGAACATGAATATCTCTCAG+TGG + chr8_1:68887918-68887937 Msa1210130:intron 35.0%
TACTGTTCATAAGAAGGAGT+TGG - chr8_1:68887979-68887998 None:intergenic 35.0%
AATCTGAAAGACATGAGTCA+AGG + chr8_1:68888319-68888338 Msa1210130:CDS 35.0%
AGGACAAAAGCAACAACAAA+TGG + chr8_1:68888339-68888358 Msa1210130:CDS 35.0%
ACAAAAGCAACAACAAATGG+TGG + chr8_1:68888342-68888361 Msa1210130:CDS 35.0%
TCAGTGATGCTTTGTAAAGA+GGG - chr8_1:68888399-68888418 None:intergenic 35.0%
TTCAGTGATGCTTTGTAAAG+AGG - chr8_1:68888400-68888419 None:intergenic 35.0%
GATTCAAAACTCATATCAGC+TGG - chr8_1:68888427-68888446 None:intergenic 35.0%
ACATGATTGCTTAGATCTGT+GGG + chr8_1:68888472-68888491 Msa1210130:three_prime_UTR 35.0%
TGCATTTCATCCCTGTAATT+AGG + chr8_1:68888517-68888536 Msa1210130:three_prime_UTR 35.0%
GCATTTCATCCCTGTAATTA+GGG + chr8_1:68888518-68888537 Msa1210130:three_prime_UTR 35.0%
CATTTCATCCCTGTAATTAG+GGG + chr8_1:68888519-68888538 Msa1210130:three_prime_UTR 35.0%
TCAAATGACCCCTAATTACA+GGG - chr8_1:68888530-68888549 None:intergenic 35.0%
TTCAAATGACCCCTAATTAC+AGG - chr8_1:68888531-68888550 None:intergenic 35.0%
CGTGTCTCAGATTTCATTAA+GGG - chr8_1:68888638-68888657 None:intergenic 35.0%
ACGTGTCTCAGATTTCATTA+AGG - chr8_1:68888639-68888658 None:intergenic 35.0%
!! AAAGTTCTTTTGGGAGGAAA+TGG - chr8_1:68888742-68888761 None:intergenic 35.0%
! GAACTTTAAAAAACCCCTTG+TGG + chr8_1:68888755-68888774 Msa1210130:three_prime_UTR 35.0%
GAAGTAGTTGAAAAAGGGTT+TGG - chr8_1:68888834-68888853 Msa1210140:CDS 35.0%
GAAGGAGAAGTAGTTGAAAA+AGG - chr8_1:68888840-68888859 Msa1210140:CDS 35.0%
TACAAGTAAGTGAAGGATCA+GGG - chr8_1:68889194-68889213 Msa1210140:CDS 35.0%
ACGAAACTACAAGTAAGTGA+AGG - chr8_1:68889201-68889220 Msa1210140:CDS 35.0%
CCAAATGCAAAATATGGCTA+CGG - chr8_1:68889277-68889296 Msa1210140:CDS 35.0%
! CGTAGCCATATTTTGCATTT+GGG + chr8_1:68889275-68889294 Msa1210130:three_prime_UTR 35.0%
! TGTCAAGTAAGGAACTTGTT+GGG + chr8_1:68889311-68889330 Msa1210130:three_prime_UTR 35.0%
CTTGTGATACAGCAACCAAA+TGG + chr8_1:68887315-68887334 Msa1210130:CDS 40.0%
ATCACTTCACTAGCAGTAAC+TGG - chr8_1:68887363-68887382 None:intergenic 40.0%
GAAGAGCAACATAGTGATCA+GGG - chr8_1:68887395-68887414 None:intergenic 40.0%
AGAAGAGCAACATAGTGATC+AGG - chr8_1:68887396-68887415 None:intergenic 40.0%
! CCAAGCAAAAGTGTATCTGT+TGG - chr8_1:68887540-68887559 None:intergenic 40.0%
! CCAACAGATACACTTTTGCT+TGG + chr8_1:68887537-68887556 Msa1210130:CDS 40.0%
TATAGACTCATCTCAGCTCA+AGG + chr8_1:68887567-68887586 Msa1210130:CDS 40.0%
! AGAGGTTACAAAGGGTATGT+GGG + chr8_1:68887710-68887729 Msa1210130:intron 40.0%
GTCTGAACCTGAAGATAACA+AGG + chr8_1:68887830-68887849 Msa1210130:CDS 40.0%
CCTTGCTACTACAAAGTCAA+TGG - chr8_1:68888201-68888220 None:intergenic 40.0%
!! CCATTGACTTTGTAGTAGCA+AGG + chr8_1:68888198-68888217 Msa1210130:intron 40.0%
TACTCACATGTGATGACTCA+AGG + chr8_1:68888448-68888467 Msa1210130:three_prime_UTR 40.0%
ACTCACATGTGATGACTCAA+GGG + chr8_1:68888449-68888468 Msa1210130:three_prime_UTR 40.0%
GACATGATTGCTTAGATCTG+TGG + chr8_1:68888471-68888490 Msa1210130:three_prime_UTR 40.0%
AATTACAGGGATGAAATGGG+AGG - chr8_1:68888577-68888596 None:intergenic 40.0%
TAAAAAACCCCTTGTGGTTG+TGG + chr8_1:68888761-68888780 Msa1210130:three_prime_UTR 40.0%
! GTTGAAAAAGGGTTTGGTAG+TGG - chr8_1:68888828-68888847 Msa1210140:CDS 40.0%
!! TGAAGCACTGCATATTGATG+AGG - chr8_1:68888872-68888891 Msa1210140:CDS 40.0%
ACAACAACAACGTCATCTTC+TGG + chr8_1:68888948-68888967 Msa1210130:three_prime_UTR 40.0%
CAACAACAACGTCATCTTCT+GGG + chr8_1:68888949-68888968 Msa1210130:three_prime_UTR 40.0%
GGAATCAGAATCGAAATCGT+CGG - chr8_1:68889156-68889175 Msa1210140:CDS 40.0%
GACGATTTCGATTCTGATTC+CGG + chr8_1:68889155-68889174 Msa1210130:three_prime_UTR 40.0%
CTACAAGTAAGTGAAGGATC+AGG - chr8_1:68889195-68889214 Msa1210140:CDS 40.0%
GTTTCGTCTTCTCATGTTTC+CGG + chr8_1:68889214-68889233 Msa1210130:three_prime_UTR 40.0%
! CCGTAGCCATATTTTGCATT+TGG + chr8_1:68889274-68889293 Msa1210130:three_prime_UTR 40.0%
GTGTCAAGTAAGGAACTTGT+TGG + chr8_1:68889310-68889329 Msa1210130:three_prime_UTR 40.0%
CTTGTGATACAGCAACCAAA+TGG + chr8_1:68887315-68887334 Msa1210130:CDS 40.0%
ATCACTTCACTAGCAGTAAC+TGG - chr8_1:68887363-68887382 None:intergenic 40.0%
GAAGAGCAACATAGTGATCA+GGG - chr8_1:68887395-68887414 None:intergenic 40.0%
AGAAGAGCAACATAGTGATC+AGG - chr8_1:68887396-68887415 None:intergenic 40.0%
! CCAAGCAAAAGTGTATCTGT+TGG - chr8_1:68887540-68887559 None:intergenic 40.0%
! CCAACAGATACACTTTTGCT+TGG + chr8_1:68887537-68887556 Msa1210130:CDS 40.0%
TATAGACTCATCTCAGCTCA+AGG + chr8_1:68887567-68887586 Msa1210130:CDS 40.0%
! AGAGGTTACAAAGGGTATGT+GGG + chr8_1:68887710-68887729 Msa1210130:intron 40.0%
GTCTGAACCTGAAGATAACA+AGG + chr8_1:68887830-68887849 Msa1210130:CDS 40.0%
CCTTGCTACTACAAAGTCAA+TGG - chr8_1:68888201-68888220 None:intergenic 40.0%
!! CCATTGACTTTGTAGTAGCA+AGG + chr8_1:68888198-68888217 Msa1210130:intron 40.0%
TACTCACATGTGATGACTCA+AGG + chr8_1:68888448-68888467 Msa1210130:three_prime_UTR 40.0%
ACTCACATGTGATGACTCAA+GGG + chr8_1:68888449-68888468 Msa1210130:three_prime_UTR 40.0%
GACATGATTGCTTAGATCTG+TGG + chr8_1:68888471-68888490 Msa1210130:three_prime_UTR 40.0%
AATTACAGGGATGAAATGGG+AGG - chr8_1:68888577-68888596 None:intergenic 40.0%
TAAAAAACCCCTTGTGGTTG+TGG + chr8_1:68888761-68888780 Msa1210130:three_prime_UTR 40.0%
! GTTGAAAAAGGGTTTGGTAG+TGG - chr8_1:68888828-68888847 Msa1210140:CDS 40.0%
!! TGAAGCACTGCATATTGATG+AGG - chr8_1:68888872-68888891 Msa1210140:CDS 40.0%
ACAACAACAACGTCATCTTC+TGG + chr8_1:68888948-68888967 Msa1210130:three_prime_UTR 40.0%
CAACAACAACGTCATCTTCT+GGG + chr8_1:68888949-68888968 Msa1210130:three_prime_UTR 40.0%
GGAATCAGAATCGAAATCGT+CGG - chr8_1:68889156-68889175 Msa1210140:CDS 40.0%
GACGATTTCGATTCTGATTC+CGG + chr8_1:68889155-68889174 Msa1210130:three_prime_UTR 40.0%
CTACAAGTAAGTGAAGGATC+AGG - chr8_1:68889195-68889214 Msa1210140:CDS 40.0%
GTTTCGTCTTCTCATGTTTC+CGG + chr8_1:68889214-68889233 Msa1210130:three_prime_UTR 40.0%
! CCGTAGCCATATTTTGCATT+TGG + chr8_1:68889274-68889293 Msa1210130:three_prime_UTR 40.0%
GTGTCAAGTAAGGAACTTGT+TGG + chr8_1:68889310-68889329 Msa1210130:three_prime_UTR 40.0%
ACTAGTGGTAAGAGAGTGAG+TGG + chr8_1:68887157-68887176 Msa1210130:five_prime_UTR 45.0%
! CAGAGGTTACAAAGGGTATG+TGG + chr8_1:68887709-68887728 Msa1210130:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - chr8_1:68888561-68888580 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - chr8_1:68888562-68888581 None:intergenic 45.0%
ATGAACATAGGGGTAGACAG+GGG - chr8_1:68888677-68888696 None:intergenic 45.0%
GATGAACATAGGGGTAGACA+GGG - chr8_1:68888678-68888697 None:intergenic 45.0%
AGATGAACATAGGGGTAGAC+AGG - chr8_1:68888679-68888698 None:intergenic 45.0%
CAGAGAAGTGAAGTGAAGGA+GGG - chr8_1:68888714-68888733 None:intergenic 45.0%
GTTCCAGAGAAGTGAAGTGA+AGG - chr8_1:68888718-68888737 None:intergenic 45.0%
GATCTATCCACAACCACAAG+GGG - chr8_1:68888771-68888790 None:intergenic 45.0%
GGATCTATCCACAACCACAA+GGG - chr8_1:68888772-68888791 None:intergenic 45.0%
TGGATCTATCCACAACCACA+AGG - chr8_1:68888773-68888792 None:intergenic 45.0%
TGAGCTTAGGTAGACGGAAA+GGG - chr8_1:68889131-68889150 Msa1210140:CDS 45.0%
AGTAAGTGAAGGATCAGGGA+GGG - chr8_1:68889190-68889209 Msa1210140:CDS 45.0%
AAGTAAGTGAAGGATCAGGG+AGG - chr8_1:68889191-68889210 Msa1210140:CDS 45.0%
ACTAGTGGTAAGAGAGTGAG+TGG + chr8_1:68887157-68887176 Msa1210130:five_prime_UTR 45.0%
! CAGAGGTTACAAAGGGTATG+TGG + chr8_1:68887709-68887728 Msa1210130:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - chr8_1:68888561-68888580 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - chr8_1:68888562-68888581 None:intergenic 45.0%
ATGAACATAGGGGTAGACAG+GGG - chr8_1:68888677-68888696 None:intergenic 45.0%
GATGAACATAGGGGTAGACA+GGG - chr8_1:68888678-68888697 None:intergenic 45.0%
AGATGAACATAGGGGTAGAC+AGG - chr8_1:68888679-68888698 None:intergenic 45.0%
CAGAGAAGTGAAGTGAAGGA+GGG - chr8_1:68888714-68888733 None:intergenic 45.0%
GTTCCAGAGAAGTGAAGTGA+AGG - chr8_1:68888718-68888737 None:intergenic 45.0%
GATCTATCCACAACCACAAG+GGG - chr8_1:68888771-68888790 None:intergenic 45.0%
GGATCTATCCACAACCACAA+GGG - chr8_1:68888772-68888791 None:intergenic 45.0%
TGGATCTATCCACAACCACA+AGG - chr8_1:68888773-68888792 None:intergenic 45.0%
TGAGCTTAGGTAGACGGAAA+GGG - chr8_1:68889131-68889150 Msa1210140:CDS 45.0%
AGTAAGTGAAGGATCAGGGA+GGG - chr8_1:68889190-68889209 Msa1210140:CDS 45.0%
AAGTAAGTGAAGGATCAGGG+AGG - chr8_1:68889191-68889210 Msa1210140:CDS 45.0%
CCAGAGAAGTGAAGTGAAGG+AGG - chr8_1:68888715-68888734 None:intergenic 50.0%
CCTCCTTCACTTCACTTCTC+TGG + chr8_1:68888712-68888731 Msa1210130:three_prime_UTR 50.0%
GTTGTTGGGGACACAAACGA+CGG - chr8_1:68889082-68889101 Msa1210140:intron 50.0%
TTTGTGTCCCCAACAACCTC+CGG + chr8_1:68889085-68889104 Msa1210130:three_prime_UTR 50.0%
CTTAGGTAGACGGAAAGGGA+CGG - chr8_1:68889127-68889146 Msa1210140:CDS 50.0%
GTGAGCTTAGGTAGACGGAA+AGG - chr8_1:68889132-68889151 Msa1210140:CDS 50.0%
TCGGAGTGAGCTTAGGTAGA+CGG - chr8_1:68889137-68889156 Msa1210140:CDS 50.0%
GAAATCGTCGGAGTGAGCTT+AGG - chr8_1:68889144-68889163 Msa1210140:CDS 50.0%
GTCTTCTCATGTTTCCGGCA+CGG + chr8_1:68889219-68889238 Msa1210130:three_prime_UTR 50.0%
CCAGAGAAGTGAAGTGAAGG+AGG - chr8_1:68888715-68888734 None:intergenic 50.0%
CCTCCTTCACTTCACTTCTC+TGG + chr8_1:68888712-68888731 Msa1210130:three_prime_UTR 50.0%
GTTGTTGGGGACACAAACGA+CGG - chr8_1:68889082-68889101 Msa1210140:intron 50.0%
TTTGTGTCCCCAACAACCTC+CGG + chr8_1:68889085-68889104 Msa1210130:three_prime_UTR 50.0%
CTTAGGTAGACGGAAAGGGA+CGG - chr8_1:68889127-68889146 Msa1210140:CDS 50.0%
GTGAGCTTAGGTAGACGGAA+AGG - chr8_1:68889132-68889151 Msa1210140:CDS 50.0%
TCGGAGTGAGCTTAGGTAGA+CGG - chr8_1:68889137-68889156 Msa1210140:CDS 50.0%
GAAATCGTCGGAGTGAGCTT+AGG - chr8_1:68889144-68889163 Msa1210140:CDS 50.0%
GTCTTCTCATGTTTCCGGCA+CGG + chr8_1:68889219-68889238 Msa1210130:three_prime_UTR 50.0%
TCAGGGAGGGAACTCAGAAC+CGG - chr8_1:68889177-68889196 Msa1210140:CDS 55.0%
TTCTCATGTTTCCGGCACGG+TGG + chr8_1:68889222-68889241 Msa1210130:three_prime_UTR 55.0%
TCAGGGAGGGAACTCAGAAC+CGG - chr8_1:68889177-68889196 Msa1210140:CDS 55.0%
TTCTCATGTTTCCGGCACGG+TGG + chr8_1:68889222-68889241 Msa1210130:three_prime_UTR 55.0%
TTCCACCGCCGGAGGTTGTT+GGG - chr8_1:68889096-68889115 Msa1210140:intron 60.0%
TTTCCACCGCCGGAGGTTGT+TGG - chr8_1:68889097-68889116 Msa1210140:intron 60.0%
GGTAGACGGAAAGGGACGGT+CGG - chr8_1:68889123-68889142 Msa1210140:CDS 60.0%
TCATGTTTCCGGCACGGTGG+CGG + chr8_1:68889225-68889244 Msa1210130:three_prime_UTR 60.0%
TTCCACCGCCGGAGGTTGTT+GGG - chr8_1:68889096-68889115 Msa1210140:intron 60.0%
TTTCCACCGCCGGAGGTTGT+TGG - chr8_1:68889097-68889116 Msa1210140:intron 60.0%
GGTAGACGGAAAGGGACGGT+CGG - chr8_1:68889123-68889142 Msa1210140:CDS 60.0%
TCATGTTTCCGGCACGGTGG+CGG + chr8_1:68889225-68889244 Msa1210130:three_prime_UTR 60.0%
GTGTCCCCAACAACCTCCGG+CGG + chr8_1:68889088-68889107 Msa1210130:three_prime_UTR 65.0%
TCCACCGCCGGAGGTTGTTG+GGG - chr8_1:68889095-68889114 Msa1210140:intron 65.0%
AGACGGAAAGGGACGGTCGG+CGG - chr8_1:68889120-68889139 Msa1210140:CDS 65.0%
GTGTCCCCAACAACCTCCGG+CGG + chr8_1:68889088-68889107 Msa1210130:three_prime_UTR 65.0%
TCCACCGCCGGAGGTTGTTG+GGG - chr8_1:68889095-68889114 Msa1210140:intron 65.0%
AGACGGAAAGGGACGGTCGG+CGG - chr8_1:68889120-68889139 Msa1210140:CDS 65.0%
TCCCCAACAACCTCCGGCGG+TGG + chr8_1:68889091-68889110 Msa1210130:three_prime_UTR 70.0%
! TGTTTCCGGCACGGTGGCGG+CGG + chr8_1:68889228-68889247 Msa1210130:three_prime_UTR 70.0%
TCCCCAACAACCTCCGGCGG+TGG + chr8_1:68889091-68889110 Msa1210130:three_prime_UTR 70.0%
! TGTTTCCGGCACGGTGGCGG+CGG + chr8_1:68889228-68889247 Msa1210130:three_prime_UTR 70.0%
TCGGCGGTTTCCACCGCCGG+AGG - chr8_1:68889104-68889123 Msa1210140:CDS 75.0%
CGGTCGGCGGTTTCCACCGC+CGG - chr8_1:68889107-68889126 Msa1210140:CDS 75.0%
! GGTGGCGGCGGTGGTGGTGA+TGG + chr8_1:68889240-68889259 Msa1210130:three_prime_UTR 75.0%
TCGGCGGTTTCCACCGCCGG+AGG - chr8_1:68889104-68889123 Msa1210140:CDS 75.0%
CGGTCGGCGGTTTCCACCGC+CGG - chr8_1:68889107-68889126 Msa1210140:CDS 75.0%
! GGTGGCGGCGGTGGTGGTGA+TGG + chr8_1:68889240-68889259 Msa1210130:three_prime_UTR 75.0%
!! TTCCGGCACGGTGGCGGCGG+TGG + chr8_1:68889231-68889250 Msa1210130:three_prime_UTR 80.0%
! CACCACCGCCGCCACCGTGC+CGG - chr8_1:68889236-68889255 Msa1210140:CDS 80.0%
!! TTCCGGCACGGTGGCGGCGG+TGG + chr8_1:68889231-68889250 Msa1210130:three_prime_UTR 80.0%
! CACCACCGCCGCCACCGTGC+CGG - chr8_1:68889236-68889255 Msa1210140:CDS 80.0%
!! CGGCACGGTGGCGGCGGTGG+TGG + chr8_1:68889234-68889253 Msa1210130:three_prime_UTR 85.0%
!! CGGCACGGTGGCGGCGGTGG+TGG + chr8_1:68889234-68889253 Msa1210130:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 68887135 68889411 68887135 ID=Msa1210130;Name=Msa1210130
chr8_1 mRNA 68887135 68889411 68887135 ID=Msa1210130-mRNA-1;Parent=Msa1210130;Name=Msa1210130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=147|1|1|1|1|1|3|980|188
chr8_1 exon 68887135 68887588 68887135 ID=Msa1210130-mRNA-1:exon:23007;Parent=Msa1210130-mRNA-1
chr8_1 exon 68887712 68887851 68887712 ID=Msa1210130-mRNA-1:exon:23008;Parent=Msa1210130-mRNA-1
chr8_1 exon 68888312 68889411 68888312 ID=Msa1210130-mRNA-1:exon:23009;Parent=Msa1210130-mRNA-1
chr8_1 five_prime_UTR 68887135 68887281 68887135 ID=Msa1210130-mRNA-1:five_prime_utr;Parent=Msa1210130-mRNA-1
chr8_1 CDS 68887282 68887588 68887282 ID=Msa1210130-mRNA-1:cds;Parent=Msa1210130-mRNA-1
chr8_1 CDS 68887712 68887851 68887712 ID=Msa1210130-mRNA-1:cds;Parent=Msa1210130-mRNA-1
chr8_1 CDS 68888312 68888431 68888312 ID=Msa1210130-mRNA-1:cds;Parent=Msa1210130-mRNA-1
chr8_1 three_prime_UTR 68888432 68889411 68888432 ID=Msa1210130-mRNA-1:three_prime_utr;Parent=Msa1210130-mRNA-1
Gene Sequence

>Msa1210130

ATGGGAAATTGTCAAGCTATTGATACAGCAACTCTTGTGATACAGCAACCAAATGGCAAAGAAGAAAGGTTGTATTGGCCAGTTACTGCTAGTGAAGTGATGAAGACACACCCTGATCACTATGTTGCTCTTCTTATCTCCACAACATTATGCACTTCAAAAGACAAAGAAAATTGTTCAAATAAGAGCAGCGACAACAACAACGACGACAACAACAACAACAAAGTTCGTATTACACGTATAAAACTTCTTAAGCCAACAGATACACTTTTGCTTGGTCAAGTTTATAGACTCATCTCAGCTCAAGAGGTTACAAAGGGTATGTGGGCTAAGAAACAAGCAAAGATGAAGAGAAACTCTTTGCCAGAATCAGCACAAAAGTCAAATCAGATTAAGGAAAGGATTAATGATAAAACAGCTAATAGGTCTGAACCTGAAGATAACAAGGAAACAAAATCTGAAAGACATGAGTCAAGGACAAAAGCAACAACAAATGGTGGCAATCATAATAATAAGTCAAGAACATGGCAACCCTCTTTACAAAGCATCACTGAATCTGCCAGCTGA
Protein sequence

>Msa1210130

MGNCQAIDTATLVIQQPNGKEERLYWPVTASEVMKTHPDHYVALLISTTLCTSKDKENCSNKSSDNNNDDNNNNKVRITRIKLLKPTDTLLLGQVYRLISAQEVTKGMWAKKQAKMKRNSLPESAQKSNQIKERINDKTANRSEPEDNKETKSERHESRTKATTNGGNHNNKSRTWQPSLQSITESAS*