AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1425740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425740 MtrunA17_Chr4g0059361 97.340 188 4 1 1 188 1 187 2.69e-134 373
Msa1425740 MtrunA17_Chr3g0117971 54.974 191 75 3 1 188 1 183 2.41e-63 193
Msa1425740 MtrunA17_Chr5g0414281 42.328 189 87 4 1 186 1 170 6.96e-40 133
Msa1425740 MtrunA17_Chr4g0054191 38.624 189 94 4 1 188 1 168 6.40e-35 120
Msa1425740 MtrunA17_Chr8g0364591 38.378 185 99 4 1 185 1 170 4.13e-30 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425740 AT5G62900.1 46.809 188 73 4 1 188 1 161 9.32e-48 153
Msa1425740 AT5G50090.1 44.444 189 73 4 1 188 1 158 6.64e-42 139
Msa1425740 AT5G50090.2 46.277 188 65 5 1 188 1 152 2.77e-41 137
Msa1425740 AT1G60010.1 41.489 188 95 4 1 188 1 173 1.26e-40 135
Msa1425740 AT5G50090.3 52.500 120 43 1 1 120 1 106 1.13e-35 122
Msa1425740 AT1G10530.1 35.638 188 99 3 1 188 1 166 8.72e-35 120
Msa1425740 AT5G67620.1 32.195 205 98 7 1 188 1 181 1.06e-23 92.8

Find 109 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTAATCACTTTAAATT+TGG 0.165381 tig0025890:+3673 Msa1425740:three_prime_UTR
GAAGGAGAAGTAGTTGAAAA+AGG 0.168731 tig0025890:-3916 Msa1425750:CDS
TAAGGGCAAAATTCTTAATT+AGG 0.175331 tig0025890:-3697 None:intergenic
TGCATTTCATCCCTGTAATT+AGG 0.175438 tig0025890:+3596 Msa1425740:three_prime_UTR
ATCTGTGGGAAATTAAATTA+AGG 0.228969 tig0025890:+3566 Msa1425740:three_prime_UTR
GTTTCGTCTTCTCATGTTTC+CGG 0.232857 tig0025890:+4293 Msa1425740:three_prime_UTR
ACTTGTTGGGATTTAGAAAT+TGG 0.236727 tig0025890:+4403 Msa1425740:three_prime_UTR
GCATTTCATCCCTGTAATTA+GGG 0.241125 tig0025890:+3597 Msa1425740:three_prime_UTR
TTAAAGTGATTAATAATTAC+AGG 0.275595 tig0025890:-3667 None:intergenic
CCTCCTTCACTTCACTTCTC+TGG 0.278732 tig0025890:+3791 Msa1425740:three_prime_UTR
ACGTGTCTCAGATTTCATTA+AGG 0.285739 tig0025890:-3715 None:intergenic
GAGGAAGGATATAAATAATA+AGG 0.287758 tig0025890:-2311 None:intergenic
GACGATTTCGATTCTGATTC+CGG 0.302020 tig0025890:+4234 Msa1425740:three_prime_UTR
AACCTTTCTTCTTTGCCATT+TGG 0.302263 tig0025890:-2412 None:intergenic
ACAAAAGTCAAATCAGATTA+AGG 0.303462 tig0025890:+2859 Msa1425740:CDS
TTCCACCGCCGGAGGTTGTT+GGG 0.305016 tig0025890:-4172 Msa1425750:intron
TTCAAATGACCCCTAATTAC+AGG 0.309823 tig0025890:-3607 None:intergenic
AATGACCCAAATGCAAAATA+TGG 0.311728 tig0025890:-4359 Msa1425750:CDS
TAATAATTACAGGGATGAAA+TGG 0.325643 tig0025890:-3657 None:intergenic
CGTGTCTCAGATTTCATTAA+GGG 0.327473 tig0025890:-3714 None:intergenic
TTTCCACCGCCGGAGGTTGT+TGG 0.355496 tig0025890:-4173 Msa1425750:intron
AGATTTACCTTGTTATCTTC+AGG 0.363890 tig0025890:-2917 None:intergenic
ACATTGGAAAATTCTAGTTC+AGG 0.365363 tig0025890:-3999 Msa1425750:intron
CGGCACGGTGGCGGCGGTGG+TGG 0.368020 tig0025890:+4313 Msa1425740:three_prime_UTR
TTAATGATAAAACAGCTAAT+AGG 0.376595 tig0025890:+2888 Msa1425740:CDS
GGTGGCGGCGGTGGTGGTGA+TGG 0.390206 tig0025890:+4319 Msa1425740:three_prime_UTR
TTCCGGCACGGTGGCGGCGG+TGG 0.401783 tig0025890:+4310 Msa1425740:three_prime_UTR
ATCACTTCACTAGCAGTAAC+TGG 0.406024 tig0025890:-2442 None:intergenic
ATTGTTTCTTGTGTCAAGTA+AGG 0.406562 tig0025890:+4379 Msa1425740:three_prime_UTR
CGGTCGGCGGTTTCCACCGC+CGG 0.413698 tig0025890:-4183 Msa1425750:CDS
ACAACAACAACGTCATCTTC+TGG 0.415357 tig0025890:+4027 Msa1425740:three_prime_UTR
AGAAGAGCAACATAGTGATC+AGG 0.427746 tig0025890:-2475 None:intergenic
AATAATTACAGGGATGAAAT+GGG 0.438337 tig0025890:-3656 None:intergenic
CATTGGAAAATTCTAGTTCA+GGG 0.442928 tig0025890:-3998 Msa1425750:intron
CAACAACAACGTCATCTTCT+GGG 0.443210 tig0025890:+4028 Msa1425740:three_prime_UTR
TCTGTGGGAAATTAAATTAA+GGG 0.443932 tig0025890:+3567 Msa1425740:three_prime_UTR
CTACAAGTAAGTGAAGGATC+AGG 0.455787 tig0025890:-4271 Msa1425750:CDS
CAGAGGTTACAAAGGGTATG+TGG 0.456771 tig0025890:+2789 Msa1425740:intron
TCATGTTTCCGGCACGGTGG+CGG 0.467660 tig0025890:+4304 Msa1425740:three_prime_UTR
AGATGAACATAGGGGTAGAC+AGG 0.468639 tig0025890:-3755 None:intergenic
TTCAGTGATGCTTTGTAAAG+AGG 0.477664 tig0025890:-3477 None:intergenic
GCAAAGAAGAAAGGTTGTAT+TGG 0.478560 tig0025890:+2419 Msa1425740:CDS
TGTCAAGTAAGGAACTTGTT+GGG 0.479149 tig0025890:+4390 Msa1425740:three_prime_UTR
TCCCCAACAACCTCCGGCGG+TGG 0.479641 tig0025890:+4170 Msa1425740:three_prime_UTR
GTGTCAAGTAAGGAACTTGT+TGG 0.482790 tig0025890:+4389 Msa1425740:three_prime_UTR
CACCACCGCCGCCACCGTGC+CGG 0.484275 tig0025890:-4312 Msa1425750:CDS
ATGGGAGGATTAGTAAGCTC+AGG 0.484705 tig0025890:-3638 None:intergenic
GAAATCGTCGGAGTGAGCTT+AGG 0.485708 tig0025890:-4220 Msa1425750:CDS
AGGACAAAAGCAACAACAAA+TGG 0.492369 tig0025890:+3419 Msa1425740:CDS
TGTTTCCGGCACGGTGGCGG+CGG 0.505907 tig0025890:+4307 Msa1425740:three_prime_UTR
TTTGTGTCCCCAACAACCTC+CGG 0.512164 tig0025890:+4164 Msa1425740:three_prime_UTR
TCAGTGATGCTTTGTAAAGA+GGG 0.514695 tig0025890:-3476 None:intergenic
GTTGCTATAAATATTCTAGT+AGG 0.517379 tig0025890:+2261 Msa1425740:five_prime_UTR
TCCACCGCCGGAGGTTGTTG+GGG 0.517578 tig0025890:-4171 Msa1425750:intron
AACCAAATGGCAAAGAAGAA+AGG 0.522282 tig0025890:+2410 Msa1425740:CDS
CCAGAGAAGTGAAGTGAAGG+AGG 0.526333 tig0025890:-3791 None:intergenic
TACTCACATGTGATGACTCA+AGG 0.527011 tig0025890:+3528 Msa1425740:three_prime_UTR
TTTGACTCTTTGAAAACTAG+TGG 0.528818 tig0025890:+2224 Msa1425740:five_prime_UTR
TTGGTTTCAGAGGTTACAAA+GGG 0.536135 tig0025890:+2782 Msa1425740:intron
TCAGGGAGGGAACTCAGAAC+CGG 0.537465 tig0025890:-4253 Msa1425750:CDS
GATTCAAAACTCATATCAGC+TGG 0.538326 tig0025890:-3504 None:intergenic
TTGATGAGGAAATCAATTGA+AGG 0.541033 tig0025890:-3934 Msa1425750:CDS
ACTAGTGGTAAGAGAGTGAG+TGG 0.541714 tig0025890:+2239 Msa1425740:five_prime_UTR
CTTGTGATACAGCAACCAAA+TGG 0.541988 tig0025890:+2397 Msa1425740:CDS
ACATGATTGCTTAGATCTGT+GGG 0.557047 tig0025890:+3552 Msa1425740:three_prime_UTR
GACATGATTGCTTAGATCTG+TGG 0.558047 tig0025890:+3551 Msa1425740:three_prime_UTR
TTTCTTCTTCAAGAAGAGGA+AGG 0.558868 tig0025890:-2326 None:intergenic
GTCTTCTCATGTTTCCGGCA+CGG 0.562757 tig0025890:+4298 Msa1425740:three_prime_UTR
GTGAGCTTAGGTAGACGGAA+AGG 0.568945 tig0025890:-4208 Msa1425750:CDS
TGAGCTTAGGTAGACGGAAA+GGG 0.574700 tig0025890:-4207 Msa1425750:CDS
GAAGAGCAACATAGTGATCA+GGG 0.575247 tig0025890:-2474 None:intergenic
CCAAGCAAAAGTGTATCTGT+TGG 0.576593 tig0025890:-2619 None:intergenic
TACAAGTAAGTGAAGGATCA+GGG 0.577021 tig0025890:-4270 Msa1425750:CDS
GTTCCAGAGAAGTGAAGTGA+AGG 0.577749 tig0025890:-3794 None:intergenic
CCAAATGCAAAATATGGCTA+CGG 0.579931 tig0025890:-4353 Msa1425750:CDS
TTTGGTTTCAGAGGTTACAA+AGG 0.584060 tig0025890:+2781 Msa1425740:intron
AGAGGTTACAAAGGGTATGT+GGG 0.585748 tig0025890:+2790 Msa1425740:intron
TCGGAGTGAGCTTAGGTAGA+CGG 0.588237 tig0025890:-4213 Msa1425750:CDS
AGACGGAAAGGGACGGTCGG+CGG 0.591139 tig0025890:-4196 Msa1425750:CDS
TAAAGTGATTAATAATTACA+GGG 0.593348 tig0025890:-3666 None:intergenic
TATAGACTCATCTCAGCTCA+AGG 0.593800 tig0025890:+2649 Msa1425740:CDS
AAATAATAAGGAAGATGCAA+CGG 0.598797 tig0025890:-2299 None:intergenic
TCAAATGACCCCTAATTACA+GGG 0.604479 tig0025890:-3606 None:intergenic
TGGATCTATCCACAACCACA+AGG 0.605488 tig0025890:-3849 None:intergenic
GTCTGAACCTGAAGATAACA+AGG 0.608807 tig0025890:+2910 Msa1425740:CDS
TGAAGCACTGCATATTGATG+AGG 0.609628 tig0025890:-3948 Msa1425750:CDS
CTTAGGTAGACGGAAAGGGA+CGG 0.618125 tig0025890:-4203 Msa1425750:CDS
AGTCAAATCAGATTAAGGAA+AGG 0.621653 tig0025890:+2864 Msa1425740:CDS
CATTTCATCCCTGTAATTAG+GGG 0.623909 tig0025890:+3598 Msa1425740:three_prime_UTR
CAGAGAAGTGAAGTGAAGGA+GGG 0.625228 tig0025890:-3790 None:intergenic
ACTCACATGTGATGACTCAA+GGG 0.627657 tig0025890:+3529 Msa1425740:three_prime_UTR
AGTAAGTGAAGGATCAGGGA+GGG 0.629875 tig0025890:-4266 Msa1425750:CDS
GTGTCCCCAACAACCTCCGG+CGG 0.630049 tig0025890:+4167 Msa1425740:three_prime_UTR
TCGGCGGTTTCCACCGCCGG+AGG 0.630883 tig0025890:-4180 Msa1425750:intron
TGGGAGGATTAGTAAGCTCA+GGG 0.635180 tig0025890:-3637 None:intergenic
AATCTGAAAGACATGAGTCA+AGG 0.637514 tig0025890:+3399 Msa1425740:CDS
GATCTATCCACAACCACAAG+GGG 0.639953 tig0025890:-3847 None:intergenic
GGTAGACGGAAAGGGACGGT+CGG 0.642297 tig0025890:-4199 Msa1425750:CDS
GATGAACATAGGGGTAGACA+GGG 0.645678 tig0025890:-3754 None:intergenic
ACAAAAGCAACAACAAATGG+TGG 0.646145 tig0025890:+3422 Msa1425740:CDS
ACGAAACTACAAGTAAGTGA+AGG 0.651561 tig0025890:-4277 Msa1425750:CDS
GGAATCAGAATCGAAATCGT+CGG 0.654540 tig0025890:-4232 Msa1425750:CDS
GGATCTATCCACAACCACAA+GGG 0.657598 tig0025890:-3848 None:intergenic
AATTACAGGGATGAAATGGG+AGG 0.666408 tig0025890:-3653 None:intergenic
ATAATAATAAGTCAAGAACA+TGG 0.691937 tig0025890:+3450 Msa1425740:CDS
TTCTCATGTTTCCGGCACGG+TGG 0.703341 tig0025890:+4301 Msa1425740:three_prime_UTR
AAGTAAGTGAAGGATCAGGG+AGG 0.735147 tig0025890:-4267 Msa1425750:CDS
ATGAACATAGGGGTAGACAG+GGG 0.756859 tig0025890:-3753 None:intergenic
GTTGTTGGGGACACAAACGA+CGG 0.759292 tig0025890:-4158 Msa1425750:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGAACAAAATAATTTTTA+AGG - tig0025890:2738-2757 None:intergenic 10.0%
!! GATTAATAATAATTTATGAT+TGG + tig0025890:3354-3373 Msa1425740:intron 10.0%
!! ATTATTAATCACTTTAAATT+TGG + tig0025890:3673-3692 Msa1425740:three_prime_UTR 10.0%
!!! AAAGAACAAAATAATTTTTA+AGG - tig0025890:2738-2757 None:intergenic 10.0%
!! GATTAATAATAATTTATGAT+TGG + tig0025890:3354-3373 Msa1425740:intron 10.0%
!! ATTATTAATCACTTTAAATT+TGG + tig0025890:3673-3692 Msa1425740:three_prime_UTR 10.0%
!! ATAAAAGAATCAAAAGAAAA+AGG - tig0025890:2705-2724 None:intergenic 15.0%
!!! TACACATTGATTATTTTTTT+TGG + tig0025890:3110-3129 Msa1425740:intron 15.0%
!! GATAATGCATAATATATATA+AGG - tig0025890:3149-3168 None:intergenic 15.0%
!! TTATGTACATTAACTAATTA+AGG + tig0025890:3207-3226 Msa1425740:intron 15.0%
!! TAAAGTGATTAATAATTACA+GGG - tig0025890:3669-3688 None:intergenic 15.0%
!! TTAAAGTGATTAATAATTAC+AGG - tig0025890:3670-3689 None:intergenic 15.0%
!! AAAAAAGAAAGAAAAGAAAT+TGG + tig0025890:4460-4479 Msa1425740:three_prime_UTR 15.0%
!! ATAAAAGAATCAAAAGAAAA+AGG - tig0025890:2705-2724 None:intergenic 15.0%
!!! TACACATTGATTATTTTTTT+TGG + tig0025890:3110-3129 Msa1425740:intron 15.0%
!! GATAATGCATAATATATATA+AGG - tig0025890:3149-3168 None:intergenic 15.0%
!! TTATGTACATTAACTAATTA+AGG + tig0025890:3207-3226 Msa1425740:intron 15.0%
!! TAAAGTGATTAATAATTACA+GGG - tig0025890:3669-3688 None:intergenic 15.0%
!! TTAAAGTGATTAATAATTAC+AGG - tig0025890:3670-3689 None:intergenic 15.0%
!! AAAAAAGAAAGAAAAGAAAT+TGG + tig0025890:4460-4479 Msa1425740:three_prime_UTR 15.0%
!! TTAATGATAAAACAGCTAAT+AGG + tig0025890:2888-2907 Msa1425740:CDS 20.0%
!! CATAATATATATAAGGTTTG+AGG - tig0025890:3142-3161 None:intergenic 20.0%
!! ATAATAATAAGTCAAGAACA+TGG + tig0025890:3450-3469 Msa1425740:CDS 20.0%
!!! AACAATTTTTTACATCACTA+AGG + tig0025890:4069-4088 Msa1425740:three_prime_UTR 20.0%
!! TTAATGATAAAACAGCTAAT+AGG + tig0025890:2888-2907 Msa1425740:CDS 20.0%
!! CATAATATATATAAGGTTTG+AGG - tig0025890:3142-3161 None:intergenic 20.0%
!! ATAATAATAAGTCAAGAACA+TGG + tig0025890:3450-3469 Msa1425740:CDS 20.0%
!!! AACAATTTTTTACATCACTA+AGG + tig0025890:4069-4088 Msa1425740:three_prime_UTR 20.0%
! GTTGCTATAAATATTCTAGT+AGG + tig0025890:2261-2280 Msa1425740:five_prime_UTR 25.0%
! AAATAATAAGGAAGATGCAA+CGG - tig0025890:2302-2321 None:intergenic 25.0%
! GAGGAAGGATATAAATAATA+AGG - tig0025890:2314-2333 None:intergenic 25.0%
! AAAAAGAAGTGAGAGATAAT+GGG + tig0025890:2346-2365 Msa1425740:exon 25.0%
!!! TTGAGTCTTTATGTTGTTTT+TGG + tig0025890:2763-2782 Msa1425740:intron 25.0%
! ACAAAAGTCAAATCAGATTA+AGG + tig0025890:2859-2878 Msa1425740:CDS 25.0%
! TATAGTTACTGTTCATAAGA+AGG - tig0025890:3064-3083 None:intergenic 25.0%
! TACATTAACTAATTAAGGTC+TGG + tig0025890:3212-3231 Msa1425740:intron 25.0%
!! GGTCTGGTTATAAATTTTAT+TGG + tig0025890:3228-3247 Msa1425740:intron 25.0%
!!! TGATTGGTTCATTATTTTTC+AGG + tig0025890:3370-3389 Msa1425740:intron 25.0%
! ATCTGTGGGAAATTAAATTA+AGG + tig0025890:3566-3585 Msa1425740:three_prime_UTR 25.0%
! TCTGTGGGAAATTAAATTAA+GGG + tig0025890:3567-3586 Msa1425740:three_prime_UTR 25.0%
! AATAATTACAGGGATGAAAT+GGG - tig0025890:3659-3678 None:intergenic 25.0%
! TAATAATTACAGGGATGAAA+TGG - tig0025890:3660-3679 None:intergenic 25.0%
! TAAGGGCAAAATTCTTAATT+AGG - tig0025890:3700-3719 None:intergenic 25.0%
!!! ATTTTGAGAAGATGAACATA+GGG - tig0025890:3767-3786 None:intergenic 25.0%
!!! TTTTTTAAAGTTCTTTTGGG+AGG - tig0025890:3827-3846 None:intergenic 25.0%
!!! GGGTTTTTTAAAGTTCTTTT+GGG - tig0025890:3830-3849 None:intergenic 25.0%
!!! AAAACCATGTGTTTTTTTGT+AGG - tig0025890:3877-3896 Msa1425750:CDS 25.0%
!!! GAAATTGGTGTTTTAGAAAT+TGG + tig0025890:4418-4437 Msa1425740:three_prime_UTR 25.0%
! GTTGCTATAAATATTCTAGT+AGG + tig0025890:2261-2280 Msa1425740:five_prime_UTR 25.0%
! AAATAATAAGGAAGATGCAA+CGG - tig0025890:2302-2321 None:intergenic 25.0%
! GAGGAAGGATATAAATAATA+AGG - tig0025890:2314-2333 None:intergenic 25.0%
! AAAAAGAAGTGAGAGATAAT+GGG + tig0025890:2346-2365 Msa1425740:exon 25.0%
!!! TTGAGTCTTTATGTTGTTTT+TGG + tig0025890:2763-2782 Msa1425740:intron 25.0%
! ACAAAAGTCAAATCAGATTA+AGG + tig0025890:2859-2878 Msa1425740:CDS 25.0%
! TATAGTTACTGTTCATAAGA+AGG - tig0025890:3064-3083 None:intergenic 25.0%
! TACATTAACTAATTAAGGTC+TGG + tig0025890:3212-3231 Msa1425740:intron 25.0%
!! GGTCTGGTTATAAATTTTAT+TGG + tig0025890:3228-3247 Msa1425740:intron 25.0%
!!! TGATTGGTTCATTATTTTTC+AGG + tig0025890:3370-3389 Msa1425740:intron 25.0%
! ATCTGTGGGAAATTAAATTA+AGG + tig0025890:3566-3585 Msa1425740:three_prime_UTR 25.0%
! TCTGTGGGAAATTAAATTAA+GGG + tig0025890:3567-3586 Msa1425740:three_prime_UTR 25.0%
! AATAATTACAGGGATGAAAT+GGG - tig0025890:3659-3678 None:intergenic 25.0%
! TAATAATTACAGGGATGAAA+TGG - tig0025890:3660-3679 None:intergenic 25.0%
! TAAGGGCAAAATTCTTAATT+AGG - tig0025890:3700-3719 None:intergenic 25.0%
!!! ATTTTGAGAAGATGAACATA+GGG - tig0025890:3767-3786 None:intergenic 25.0%
!!! TTTTTTAAAGTTCTTTTGGG+AGG - tig0025890:3827-3846 None:intergenic 25.0%
!!! GGGTTTTTTAAAGTTCTTTT+GGG - tig0025890:3830-3849 None:intergenic 25.0%
!!! AAAACCATGTGTTTTTTTGT+AGG - tig0025890:3877-3896 Msa1425750:CDS 25.0%
!!! GAAATTGGTGTTTTAGAAAT+TGG + tig0025890:4418-4437 Msa1425740:three_prime_UTR 25.0%
! TTTGACTCTTTGAAAACTAG+TGG + tig0025890:2224-2243 Msa1425740:five_prime_UTR 30.0%
! TCTTTTTCTTCTTCAAGAAG+AGG - tig0025890:2333-2352 None:intergenic 30.0%
GAAAAAGAAGTGAGAGATAA+TGG + tig0025890:2345-2364 Msa1425740:exon 30.0%
!!! TTTTGAAGTGCATAATGTTG+TGG - tig0025890:2506-2525 None:intergenic 30.0%
!!! TATGTTGTTTTTGGTTTCAG+AGG + tig0025890:2772-2791 Msa1425740:intron 30.0%
AGTCAAATCAGATTAAGGAA+AGG + tig0025890:2864-2883 Msa1425740:CDS 30.0%
! AGATTTACCTTGTTATCTTC+AGG - tig0025890:2920-2939 None:intergenic 30.0%
AGATTCAATCAACATGGATT+TGG - tig0025890:2975-2994 None:intergenic 30.0%
AAGAACATGAATATCTTCAG+TGG + tig0025890:2997-3016 Msa1425740:intron 30.0%
!! TAAGAGAGAGATTTGTTGAA+TGG + tig0025890:3330-3349 Msa1425740:intron 30.0%
!! TTTTGAGAAGATGAACATAG+GGG - tig0025890:3766-3785 None:intergenic 30.0%
!! GATTTTGAGAAGATGAACAT+AGG - tig0025890:3768-3787 None:intergenic 30.0%
!!! GGGGTTTTTTAAAGTTCTTT+TGG - tig0025890:3831-3850 None:intergenic 30.0%
!!! CATGTGTTTTTTTGTAGGTA+TGG - tig0025890:3872-3891 None:intergenic 30.0%
CATACCTACAAAAAAACACA+TGG + tig0025890:3870-3889 Msa1425740:three_prime_UTR 30.0%
AAGGAGAAGTAGTTGAAAAA+GGG - tig0025890:3918-3937 Msa1425750:CDS 30.0%
TTGATGAGGAAATCAATTGA+AGG - tig0025890:3937-3956 Msa1425750:CDS 30.0%
!! CTTCTTCATTTTTCACTTGT+AGG + tig0025890:3974-3993 Msa1425740:three_prime_UTR 30.0%
!! CATTGGAAAATTCTAGTTCA+GGG - tig0025890:4001-4020 Msa1425750:intron 30.0%
!! ACATTGGAAAATTCTAGTTC+AGG - tig0025890:4002-4021 Msa1425750:intron 30.0%
!! GTTGTTGTTGTGTTTTACAT+TGG - tig0025890:4018-4037 Msa1425750:intron 30.0%
AATGACCCAAATGCAAAATA+TGG - tig0025890:4362-4381 None:intergenic 30.0%
! ATTGTTTCTTGTGTCAAGTA+AGG + tig0025890:4379-4398 Msa1425740:three_prime_UTR 30.0%
! ACTTGTTGGGATTTAGAAAT+TGG + tig0025890:4403-4422 Msa1425740:three_prime_UTR 30.0%
! TTTGACTCTTTGAAAACTAG+TGG + tig0025890:2224-2243 Msa1425740:five_prime_UTR 30.0%
! TCTTTTTCTTCTTCAAGAAG+AGG - tig0025890:2333-2352 None:intergenic 30.0%
GAAAAAGAAGTGAGAGATAA+TGG + tig0025890:2345-2364 Msa1425740:exon 30.0%
!!! TTTTGAAGTGCATAATGTTG+TGG - tig0025890:2506-2525 None:intergenic 30.0%
!!! TATGTTGTTTTTGGTTTCAG+AGG + tig0025890:2772-2791 Msa1425740:intron 30.0%
AGTCAAATCAGATTAAGGAA+AGG + tig0025890:2864-2883 Msa1425740:CDS 30.0%
! AGATTTACCTTGTTATCTTC+AGG - tig0025890:2920-2939 None:intergenic 30.0%
AGATTCAATCAACATGGATT+TGG - tig0025890:2975-2994 None:intergenic 30.0%
AAGAACATGAATATCTTCAG+TGG + tig0025890:2997-3016 Msa1425740:intron 30.0%
!! TAAGAGAGAGATTTGTTGAA+TGG + tig0025890:3330-3349 Msa1425740:intron 30.0%
!! TTTTGAGAAGATGAACATAG+GGG - tig0025890:3766-3785 None:intergenic 30.0%
!! GATTTTGAGAAGATGAACAT+AGG - tig0025890:3768-3787 None:intergenic 30.0%
!!! GGGGTTTTTTAAAGTTCTTT+TGG - tig0025890:3831-3850 None:intergenic 30.0%
!!! CATGTGTTTTTTTGTAGGTA+TGG - tig0025890:3872-3891 None:intergenic 30.0%
CATACCTACAAAAAAACACA+TGG + tig0025890:3870-3889 Msa1425740:three_prime_UTR 30.0%
AAGGAGAAGTAGTTGAAAAA+GGG - tig0025890:3918-3937 Msa1425750:CDS 30.0%
TTGATGAGGAAATCAATTGA+AGG - tig0025890:3937-3956 Msa1425750:CDS 30.0%
!! CTTCTTCATTTTTCACTTGT+AGG + tig0025890:3974-3993 Msa1425740:three_prime_UTR 30.0%
!! CATTGGAAAATTCTAGTTCA+GGG - tig0025890:4001-4020 Msa1425750:intron 30.0%
!! ACATTGGAAAATTCTAGTTC+AGG - tig0025890:4002-4021 Msa1425750:intron 30.0%
!! GTTGTTGTTGTGTTTTACAT+TGG - tig0025890:4018-4037 Msa1425750:intron 30.0%
AATGACCCAAATGCAAAATA+TGG - tig0025890:4362-4381 None:intergenic 30.0%
! ATTGTTTCTTGTGTCAAGTA+AGG + tig0025890:4379-4398 Msa1425740:three_prime_UTR 30.0%
! ACTTGTTGGGATTTAGAAAT+TGG + tig0025890:4403-4422 Msa1425740:three_prime_UTR 30.0%
TTTCTTCTTCAAGAAGAGGA+AGG - tig0025890:2329-2348 None:intergenic 35.0%
AACCAAATGGCAAAGAAGAA+AGG + tig0025890:2410-2429 Msa1425740:CDS 35.0%
AACCTTTCTTCTTTGCCATT+TGG - tig0025890:2415-2434 None:intergenic 35.0%
GCAAAGAAGAAAGGTTGTAT+TGG + tig0025890:2419-2438 Msa1425740:CDS 35.0%
! TTTGGTTTCAGAGGTTACAA+AGG + tig0025890:2781-2800 Msa1425740:intron 35.0%
TTGGTTTCAGAGGTTACAAA+GGG + tig0025890:2782-2801 Msa1425740:intron 35.0%
!!! TTTGACTTTTGTGCTGATTC+TGG - tig0025890:2851-2870 None:intergenic 35.0%
TCTTGCAGATTCAATCAACA+TGG - tig0025890:2981-3000 None:intergenic 35.0%
TACTGTTCATAAGAAGGAGT+TGG - tig0025890:3058-3077 None:intergenic 35.0%
AATCTGAAAGACATGAGTCA+AGG + tig0025890:3399-3418 Msa1425740:CDS 35.0%
AGGACAAAAGCAACAACAAA+TGG + tig0025890:3419-3438 Msa1425740:CDS 35.0%
ACAAAAGCAACAACAAATGG+TGG + tig0025890:3422-3441 Msa1425740:CDS 35.0%
TCAGTGATGCTTTGTAAAGA+GGG - tig0025890:3479-3498 None:intergenic 35.0%
TTCAGTGATGCTTTGTAAAG+AGG - tig0025890:3480-3499 None:intergenic 35.0%
GATTCAAAACTCATATCAGC+TGG - tig0025890:3507-3526 None:intergenic 35.0%
ACATGATTGCTTAGATCTGT+GGG + tig0025890:3552-3571 Msa1425740:three_prime_UTR 35.0%
TGCATTTCATCCCTGTAATT+AGG + tig0025890:3596-3615 Msa1425740:three_prime_UTR 35.0%
GCATTTCATCCCTGTAATTA+GGG + tig0025890:3597-3616 Msa1425740:three_prime_UTR 35.0%
CATTTCATCCCTGTAATTAG+GGG + tig0025890:3598-3617 Msa1425740:three_prime_UTR 35.0%
TCAAATGACCCCTAATTACA+GGG - tig0025890:3609-3628 None:intergenic 35.0%
TTCAAATGACCCCTAATTAC+AGG - tig0025890:3610-3629 None:intergenic 35.0%
CGTGTCTCAGATTTCATTAA+GGG - tig0025890:3717-3736 None:intergenic 35.0%
ACGTGTCTCAGATTTCATTA+AGG - tig0025890:3718-3737 None:intergenic 35.0%
!! AAAGTTCTTTTGGGAGGAAA+TGG - tig0025890:3821-3840 None:intergenic 35.0%
! GAACTTTAAAAAACCCCTTG+TGG + tig0025890:3834-3853 Msa1425740:three_prime_UTR 35.0%
GAAGTAGTTGAAAAAGGGTT+TGG - tig0025890:3913-3932 Msa1425750:CDS 35.0%
GAAGGAGAAGTAGTTGAAAA+AGG - tig0025890:3919-3938 Msa1425750:CDS 35.0%
TACAAGTAAGTGAAGGATCA+GGG - tig0025890:4273-4292 Msa1425750:CDS 35.0%
ACGAAACTACAAGTAAGTGA+AGG - tig0025890:4280-4299 Msa1425750:CDS 35.0%
CCAAATGCAAAATATGGCTA+CGG - tig0025890:4356-4375 Msa1425750:CDS 35.0%
! CGTAGCCATATTTTGCATTT+GGG + tig0025890:4354-4373 Msa1425740:three_prime_UTR 35.0%
! TGTCAAGTAAGGAACTTGTT+GGG + tig0025890:4390-4409 Msa1425740:three_prime_UTR 35.0%
TTTCTTCTTCAAGAAGAGGA+AGG - tig0025890:2329-2348 None:intergenic 35.0%
AACCAAATGGCAAAGAAGAA+AGG + tig0025890:2410-2429 Msa1425740:CDS 35.0%
AACCTTTCTTCTTTGCCATT+TGG - tig0025890:2415-2434 None:intergenic 35.0%
GCAAAGAAGAAAGGTTGTAT+TGG + tig0025890:2419-2438 Msa1425740:CDS 35.0%
! TTTGGTTTCAGAGGTTACAA+AGG + tig0025890:2781-2800 Msa1425740:intron 35.0%
TTGGTTTCAGAGGTTACAAA+GGG + tig0025890:2782-2801 Msa1425740:intron 35.0%
!!! TTTGACTTTTGTGCTGATTC+TGG - tig0025890:2851-2870 None:intergenic 35.0%
TCTTGCAGATTCAATCAACA+TGG - tig0025890:2981-3000 None:intergenic 35.0%
TACTGTTCATAAGAAGGAGT+TGG - tig0025890:3058-3077 None:intergenic 35.0%
AATCTGAAAGACATGAGTCA+AGG + tig0025890:3399-3418 Msa1425740:CDS 35.0%
AGGACAAAAGCAACAACAAA+TGG + tig0025890:3419-3438 Msa1425740:CDS 35.0%
ACAAAAGCAACAACAAATGG+TGG + tig0025890:3422-3441 Msa1425740:CDS 35.0%
TCAGTGATGCTTTGTAAAGA+GGG - tig0025890:3479-3498 None:intergenic 35.0%
TTCAGTGATGCTTTGTAAAG+AGG - tig0025890:3480-3499 None:intergenic 35.0%
GATTCAAAACTCATATCAGC+TGG - tig0025890:3507-3526 None:intergenic 35.0%
ACATGATTGCTTAGATCTGT+GGG + tig0025890:3552-3571 Msa1425740:three_prime_UTR 35.0%
TGCATTTCATCCCTGTAATT+AGG + tig0025890:3596-3615 Msa1425740:three_prime_UTR 35.0%
GCATTTCATCCCTGTAATTA+GGG + tig0025890:3597-3616 Msa1425740:three_prime_UTR 35.0%
CATTTCATCCCTGTAATTAG+GGG + tig0025890:3598-3617 Msa1425740:three_prime_UTR 35.0%
TCAAATGACCCCTAATTACA+GGG - tig0025890:3609-3628 None:intergenic 35.0%
TTCAAATGACCCCTAATTAC+AGG - tig0025890:3610-3629 None:intergenic 35.0%
CGTGTCTCAGATTTCATTAA+GGG - tig0025890:3717-3736 None:intergenic 35.0%
ACGTGTCTCAGATTTCATTA+AGG - tig0025890:3718-3737 None:intergenic 35.0%
!! AAAGTTCTTTTGGGAGGAAA+TGG - tig0025890:3821-3840 None:intergenic 35.0%
! GAACTTTAAAAAACCCCTTG+TGG + tig0025890:3834-3853 Msa1425740:three_prime_UTR 35.0%
GAAGTAGTTGAAAAAGGGTT+TGG - tig0025890:3913-3932 Msa1425750:CDS 35.0%
GAAGGAGAAGTAGTTGAAAA+AGG - tig0025890:3919-3938 Msa1425750:CDS 35.0%
TACAAGTAAGTGAAGGATCA+GGG - tig0025890:4273-4292 Msa1425750:CDS 35.0%
ACGAAACTACAAGTAAGTGA+AGG - tig0025890:4280-4299 Msa1425750:CDS 35.0%
CCAAATGCAAAATATGGCTA+CGG - tig0025890:4356-4375 Msa1425750:CDS 35.0%
! CGTAGCCATATTTTGCATTT+GGG + tig0025890:4354-4373 Msa1425740:three_prime_UTR 35.0%
! TGTCAAGTAAGGAACTTGTT+GGG + tig0025890:4390-4409 Msa1425740:three_prime_UTR 35.0%
CTTGTGATACAGCAACCAAA+TGG + tig0025890:2397-2416 Msa1425740:CDS 40.0%
ATCACTTCACTAGCAGTAAC+TGG - tig0025890:2445-2464 None:intergenic 40.0%
GAAGAGCAACATAGTGATCA+GGG - tig0025890:2477-2496 None:intergenic 40.0%
AGAAGAGCAACATAGTGATC+AGG - tig0025890:2478-2497 None:intergenic 40.0%
! CCAAGCAAAAGTGTATCTGT+TGG - tig0025890:2622-2641 None:intergenic 40.0%
! CCAACAGATACACTTTTGCT+TGG + tig0025890:2619-2638 Msa1425740:CDS 40.0%
TATAGACTCATCTCAGCTCA+AGG + tig0025890:2649-2668 Msa1425740:CDS 40.0%
! AGAGGTTACAAAGGGTATGT+GGG + tig0025890:2790-2809 Msa1425740:intron 40.0%
GTCTGAACCTGAAGATAACA+AGG + tig0025890:2910-2929 Msa1425740:CDS 40.0%
CCTTGCTACTACAAAGTCAA+TGG - tig0025890:3280-3299 None:intergenic 40.0%
!! CCATTGACTTTGTAGTAGCA+AGG + tig0025890:3277-3296 Msa1425740:intron 40.0%
TACTCACATGTGATGACTCA+AGG + tig0025890:3528-3547 Msa1425740:three_prime_UTR 40.0%
ACTCACATGTGATGACTCAA+GGG + tig0025890:3529-3548 Msa1425740:three_prime_UTR 40.0%
GACATGATTGCTTAGATCTG+TGG + tig0025890:3551-3570 Msa1425740:three_prime_UTR 40.0%
AATTACAGGGATGAAATGGG+AGG - tig0025890:3656-3675 None:intergenic 40.0%
TAAAAAACCCCTTGTGGTTG+TGG + tig0025890:3840-3859 Msa1425740:three_prime_UTR 40.0%
! GTTGAAAAAGGGTTTGGTAG+TGG - tig0025890:3907-3926 Msa1425750:CDS 40.0%
!! TGAAGCACTGCATATTGATG+AGG - tig0025890:3951-3970 Msa1425750:CDS 40.0%
ACAACAACAACGTCATCTTC+TGG + tig0025890:4027-4046 Msa1425740:three_prime_UTR 40.0%
CAACAACAACGTCATCTTCT+GGG + tig0025890:4028-4047 Msa1425740:three_prime_UTR 40.0%
GGAATCAGAATCGAAATCGT+CGG - tig0025890:4235-4254 Msa1425750:CDS 40.0%
GACGATTTCGATTCTGATTC+CGG + tig0025890:4234-4253 Msa1425740:three_prime_UTR 40.0%
CTACAAGTAAGTGAAGGATC+AGG - tig0025890:4274-4293 Msa1425750:CDS 40.0%
GTTTCGTCTTCTCATGTTTC+CGG + tig0025890:4293-4312 Msa1425740:three_prime_UTR 40.0%
! CCGTAGCCATATTTTGCATT+TGG + tig0025890:4353-4372 Msa1425740:three_prime_UTR 40.0%
GTGTCAAGTAAGGAACTTGT+TGG + tig0025890:4389-4408 Msa1425740:three_prime_UTR 40.0%
CTTGTGATACAGCAACCAAA+TGG + tig0025890:2397-2416 Msa1425740:CDS 40.0%
ATCACTTCACTAGCAGTAAC+TGG - tig0025890:2445-2464 None:intergenic 40.0%
GAAGAGCAACATAGTGATCA+GGG - tig0025890:2477-2496 None:intergenic 40.0%
AGAAGAGCAACATAGTGATC+AGG - tig0025890:2478-2497 None:intergenic 40.0%
! CCAAGCAAAAGTGTATCTGT+TGG - tig0025890:2622-2641 None:intergenic 40.0%
! CCAACAGATACACTTTTGCT+TGG + tig0025890:2619-2638 Msa1425740:CDS 40.0%
TATAGACTCATCTCAGCTCA+AGG + tig0025890:2649-2668 Msa1425740:CDS 40.0%
! AGAGGTTACAAAGGGTATGT+GGG + tig0025890:2790-2809 Msa1425740:intron 40.0%
GTCTGAACCTGAAGATAACA+AGG + tig0025890:2910-2929 Msa1425740:CDS 40.0%
CCTTGCTACTACAAAGTCAA+TGG - tig0025890:3280-3299 None:intergenic 40.0%
!! CCATTGACTTTGTAGTAGCA+AGG + tig0025890:3277-3296 Msa1425740:intron 40.0%
TACTCACATGTGATGACTCA+AGG + tig0025890:3528-3547 Msa1425740:three_prime_UTR 40.0%
ACTCACATGTGATGACTCAA+GGG + tig0025890:3529-3548 Msa1425740:three_prime_UTR 40.0%
GACATGATTGCTTAGATCTG+TGG + tig0025890:3551-3570 Msa1425740:three_prime_UTR 40.0%
AATTACAGGGATGAAATGGG+AGG - tig0025890:3656-3675 None:intergenic 40.0%
TAAAAAACCCCTTGTGGTTG+TGG + tig0025890:3840-3859 Msa1425740:three_prime_UTR 40.0%
! GTTGAAAAAGGGTTTGGTAG+TGG - tig0025890:3907-3926 Msa1425750:CDS 40.0%
!! TGAAGCACTGCATATTGATG+AGG - tig0025890:3951-3970 Msa1425750:CDS 40.0%
ACAACAACAACGTCATCTTC+TGG + tig0025890:4027-4046 Msa1425740:three_prime_UTR 40.0%
CAACAACAACGTCATCTTCT+GGG + tig0025890:4028-4047 Msa1425740:three_prime_UTR 40.0%
GGAATCAGAATCGAAATCGT+CGG - tig0025890:4235-4254 Msa1425750:CDS 40.0%
GACGATTTCGATTCTGATTC+CGG + tig0025890:4234-4253 Msa1425740:three_prime_UTR 40.0%
CTACAAGTAAGTGAAGGATC+AGG - tig0025890:4274-4293 Msa1425750:CDS 40.0%
GTTTCGTCTTCTCATGTTTC+CGG + tig0025890:4293-4312 Msa1425740:three_prime_UTR 40.0%
! CCGTAGCCATATTTTGCATT+TGG + tig0025890:4353-4372 Msa1425740:three_prime_UTR 40.0%
GTGTCAAGTAAGGAACTTGT+TGG + tig0025890:4389-4408 Msa1425740:three_prime_UTR 40.0%
ACTAGTGGTAAGAGAGTGAG+TGG + tig0025890:2239-2258 Msa1425740:five_prime_UTR 45.0%
! CAGAGGTTACAAAGGGTATG+TGG + tig0025890:2789-2808 Msa1425740:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - tig0025890:3640-3659 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - tig0025890:3641-3660 None:intergenic 45.0%
ATGAACATAGGGGTAGACAG+GGG - tig0025890:3756-3775 None:intergenic 45.0%
GATGAACATAGGGGTAGACA+GGG - tig0025890:3757-3776 None:intergenic 45.0%
AGATGAACATAGGGGTAGAC+AGG - tig0025890:3758-3777 None:intergenic 45.0%
CAGAGAAGTGAAGTGAAGGA+GGG - tig0025890:3793-3812 None:intergenic 45.0%
GTTCCAGAGAAGTGAAGTGA+AGG - tig0025890:3797-3816 None:intergenic 45.0%
GATCTATCCACAACCACAAG+GGG - tig0025890:3850-3869 None:intergenic 45.0%
GGATCTATCCACAACCACAA+GGG - tig0025890:3851-3870 None:intergenic 45.0%
TGGATCTATCCACAACCACA+AGG - tig0025890:3852-3871 None:intergenic 45.0%
TGAGCTTAGGTAGACGGAAA+GGG - tig0025890:4210-4229 Msa1425750:CDS 45.0%
AGTAAGTGAAGGATCAGGGA+GGG - tig0025890:4269-4288 Msa1425750:CDS 45.0%
AAGTAAGTGAAGGATCAGGG+AGG - tig0025890:4270-4289 Msa1425750:CDS 45.0%
ACTAGTGGTAAGAGAGTGAG+TGG + tig0025890:2239-2258 Msa1425740:five_prime_UTR 45.0%
! CAGAGGTTACAAAGGGTATG+TGG + tig0025890:2789-2808 Msa1425740:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - tig0025890:3640-3659 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - tig0025890:3641-3660 None:intergenic 45.0%
ATGAACATAGGGGTAGACAG+GGG - tig0025890:3756-3775 None:intergenic 45.0%
GATGAACATAGGGGTAGACA+GGG - tig0025890:3757-3776 None:intergenic 45.0%
AGATGAACATAGGGGTAGAC+AGG - tig0025890:3758-3777 None:intergenic 45.0%
CAGAGAAGTGAAGTGAAGGA+GGG - tig0025890:3793-3812 None:intergenic 45.0%
GTTCCAGAGAAGTGAAGTGA+AGG - tig0025890:3797-3816 None:intergenic 45.0%
GATCTATCCACAACCACAAG+GGG - tig0025890:3850-3869 None:intergenic 45.0%
GGATCTATCCACAACCACAA+GGG - tig0025890:3851-3870 None:intergenic 45.0%
TGGATCTATCCACAACCACA+AGG - tig0025890:3852-3871 None:intergenic 45.0%
TGAGCTTAGGTAGACGGAAA+GGG - tig0025890:4210-4229 Msa1425750:CDS 45.0%
AGTAAGTGAAGGATCAGGGA+GGG - tig0025890:4269-4288 Msa1425750:CDS 45.0%
AAGTAAGTGAAGGATCAGGG+AGG - tig0025890:4270-4289 Msa1425750:CDS 45.0%
CCAGAGAAGTGAAGTGAAGG+AGG - tig0025890:3794-3813 None:intergenic 50.0%
CCTCCTTCACTTCACTTCTC+TGG + tig0025890:3791-3810 Msa1425740:three_prime_UTR 50.0%
GTTGTTGGGGACACAAACGA+CGG - tig0025890:4161-4180 Msa1425750:intron 50.0%
TTTGTGTCCCCAACAACCTC+CGG + tig0025890:4164-4183 Msa1425740:three_prime_UTR 50.0%
CTTAGGTAGACGGAAAGGGA+CGG - tig0025890:4206-4225 Msa1425750:CDS 50.0%
GTGAGCTTAGGTAGACGGAA+AGG - tig0025890:4211-4230 Msa1425750:CDS 50.0%
TCGGAGTGAGCTTAGGTAGA+CGG - tig0025890:4216-4235 Msa1425750:CDS 50.0%
GAAATCGTCGGAGTGAGCTT+AGG - tig0025890:4223-4242 Msa1425750:CDS 50.0%
GTCTTCTCATGTTTCCGGCA+CGG + tig0025890:4298-4317 Msa1425740:three_prime_UTR 50.0%
CCAGAGAAGTGAAGTGAAGG+AGG - tig0025890:3794-3813 None:intergenic 50.0%
CCTCCTTCACTTCACTTCTC+TGG + tig0025890:3791-3810 Msa1425740:three_prime_UTR 50.0%
GTTGTTGGGGACACAAACGA+CGG - tig0025890:4161-4180 Msa1425750:intron 50.0%
TTTGTGTCCCCAACAACCTC+CGG + tig0025890:4164-4183 Msa1425740:three_prime_UTR 50.0%
CTTAGGTAGACGGAAAGGGA+CGG - tig0025890:4206-4225 Msa1425750:CDS 50.0%
GTGAGCTTAGGTAGACGGAA+AGG - tig0025890:4211-4230 Msa1425750:CDS 50.0%
TCGGAGTGAGCTTAGGTAGA+CGG - tig0025890:4216-4235 Msa1425750:CDS 50.0%
GAAATCGTCGGAGTGAGCTT+AGG - tig0025890:4223-4242 Msa1425750:CDS 50.0%
GTCTTCTCATGTTTCCGGCA+CGG + tig0025890:4298-4317 Msa1425740:three_prime_UTR 50.0%
TCAGGGAGGGAACTCAGAAC+CGG - tig0025890:4256-4275 Msa1425750:CDS 55.0%
TTCTCATGTTTCCGGCACGG+TGG + tig0025890:4301-4320 Msa1425740:three_prime_UTR 55.0%
TCAGGGAGGGAACTCAGAAC+CGG - tig0025890:4256-4275 Msa1425750:CDS 55.0%
TTCTCATGTTTCCGGCACGG+TGG + tig0025890:4301-4320 Msa1425740:three_prime_UTR 55.0%
TTCCACCGCCGGAGGTTGTT+GGG - tig0025890:4175-4194 Msa1425750:intron 60.0%
TTTCCACCGCCGGAGGTTGT+TGG - tig0025890:4176-4195 Msa1425750:intron 60.0%
GGTAGACGGAAAGGGACGGT+CGG - tig0025890:4202-4221 Msa1425750:CDS 60.0%
TCATGTTTCCGGCACGGTGG+CGG + tig0025890:4304-4323 Msa1425740:three_prime_UTR 60.0%
TTCCACCGCCGGAGGTTGTT+GGG - tig0025890:4175-4194 Msa1425750:intron 60.0%
TTTCCACCGCCGGAGGTTGT+TGG - tig0025890:4176-4195 Msa1425750:intron 60.0%
GGTAGACGGAAAGGGACGGT+CGG - tig0025890:4202-4221 Msa1425750:CDS 60.0%
TCATGTTTCCGGCACGGTGG+CGG + tig0025890:4304-4323 Msa1425740:three_prime_UTR 60.0%
GTGTCCCCAACAACCTCCGG+CGG + tig0025890:4167-4186 Msa1425740:three_prime_UTR 65.0%
TCCACCGCCGGAGGTTGTTG+GGG - tig0025890:4174-4193 Msa1425750:intron 65.0%
AGACGGAAAGGGACGGTCGG+CGG - tig0025890:4199-4218 Msa1425750:CDS 65.0%
GTGTCCCCAACAACCTCCGG+CGG + tig0025890:4167-4186 Msa1425740:three_prime_UTR 65.0%
TCCACCGCCGGAGGTTGTTG+GGG - tig0025890:4174-4193 Msa1425750:intron 65.0%
AGACGGAAAGGGACGGTCGG+CGG - tig0025890:4199-4218 Msa1425750:CDS 65.0%
TCCCCAACAACCTCCGGCGG+TGG + tig0025890:4170-4189 Msa1425740:three_prime_UTR 70.0%
! TGTTTCCGGCACGGTGGCGG+CGG + tig0025890:4307-4326 Msa1425740:three_prime_UTR 70.0%
TCCCCAACAACCTCCGGCGG+TGG + tig0025890:4170-4189 Msa1425740:three_prime_UTR 70.0%
! TGTTTCCGGCACGGTGGCGG+CGG + tig0025890:4307-4326 Msa1425740:three_prime_UTR 70.0%
TCGGCGGTTTCCACCGCCGG+AGG - tig0025890:4183-4202 Msa1425750:CDS 75.0%
CGGTCGGCGGTTTCCACCGC+CGG - tig0025890:4186-4205 Msa1425750:CDS 75.0%
! GGTGGCGGCGGTGGTGGTGA+TGG + tig0025890:4319-4338 Msa1425740:three_prime_UTR 75.0%
TCGGCGGTTTCCACCGCCGG+AGG - tig0025890:4183-4202 Msa1425750:CDS 75.0%
CGGTCGGCGGTTTCCACCGC+CGG - tig0025890:4186-4205 Msa1425750:CDS 75.0%
! GGTGGCGGCGGTGGTGGTGA+TGG + tig0025890:4319-4338 Msa1425740:three_prime_UTR 75.0%
!! TTCCGGCACGGTGGCGGCGG+TGG + tig0025890:4310-4329 Msa1425740:three_prime_UTR 80.0%
! CACCACCGCCGCCACCGTGC+CGG - tig0025890:4315-4334 Msa1425750:CDS 80.0%
!! TTCCGGCACGGTGGCGGCGG+TGG + tig0025890:4310-4329 Msa1425740:three_prime_UTR 80.0%
! CACCACCGCCGCCACCGTGC+CGG - tig0025890:4315-4334 Msa1425750:CDS 80.0%
!! CGGCACGGTGGCGGCGGTGG+TGG + tig0025890:4313-4332 Msa1425740:three_prime_UTR 85.0%
!! CGGCACGGTGGCGGCGGTGG+TGG + tig0025890:4313-4332 Msa1425740:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
tig0025890 gene 2217 4493 2217 ID=Msa1425740;Name=Msa1425740
tig0025890 mRNA 2217 4493 2217 ID=Msa1425740-mRNA-1;Parent=Msa1425740;Name=Msa1425740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=147|1|1|1|1|1|3|982|188
tig0025890 exon 2217 2670 2217 ID=Msa1425740-mRNA-1:exon:4453;Parent=Msa1425740-mRNA-1
tig0025890 exon 2792 2931 2792 ID=Msa1425740-mRNA-1:exon:4454;Parent=Msa1425740-mRNA-1
tig0025890 exon 3392 4493 3392 ID=Msa1425740-mRNA-1:exon:4455;Parent=Msa1425740-mRNA-1
tig0025890 five_prime_UTR 2217 2363 2217 ID=Msa1425740-mRNA-1:five_prime_utr;Parent=Msa1425740-mRNA-1
tig0025890 CDS 2364 2670 2364 ID=Msa1425740-mRNA-1:cds;Parent=Msa1425740-mRNA-1
tig0025890 CDS 2792 2931 2792 ID=Msa1425740-mRNA-1:cds;Parent=Msa1425740-mRNA-1
tig0025890 CDS 3392 3511 3392 ID=Msa1425740-mRNA-1:cds;Parent=Msa1425740-mRNA-1
tig0025890 three_prime_UTR 3512 4493 3512 ID=Msa1425740-mRNA-1:three_prime_utr;Parent=Msa1425740-mRNA-1
Gene Sequence

>Msa1425740

ATGGGAAATTGTCAAGCTATTGATACAGCAACTCTTGTGATACAGCAACCAAATGGCAAAGAAGAAAGGTTGTATTGGCCAGTTACTGCTAGTGAAGTGATGAAGACACACCCTGATCACTATGTTGCTCTTCTTATCTCCACAACATTATGCACTTCAAAAGACAAAGAAAATTGTTCAAATAAGAGCAGCGACAACAACAACGACGACAACAACAACAACAAAGTTCGTATTACACGTATAAAACTTCTTAAGCCAACAGATACACTTTTGCTTGGTCAAGTTTATAGACTCATCTCAGCTCAAGAGGTTACAAAGGGTATGTGGGCTAAGAAACAAGCAAAGATGAAGAGAAACTCTTTGCCAGAATCAGCACAAAAGTCAAATCAGATTAAGGAAAGGATTAATGATAAAACAGCTAATAGGTCTGAACCTGAAGATAACAAGGAAACAAAATCTGAAAGACATGAGTCAAGGACAAAAGCAACAACAAATGGTGGCAATCATAATAATAAGTCAAGAACATGGCAACCCTCTTTACAAAGCATCACTGAATCTGCCAGCTGA
Protein sequence

>Msa1425740

MGNCQAIDTATLVIQQPNGKEERLYWPVTASEVMKTHPDHYVALLISTTLCTSKDKENCSNKSSDNNNDDNNNNKVRITRIKLLKPTDTLLLGQVYRLISAQEVTKGMWAKKQAKMKRNSLPESAQKSNQIKERINDKTANRSEPEDNKETKSERHESRTKATTNGGNHNNKSRTWQPSLQSITESAS*