Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222500 | XP_003610252.1 | 76.106 | 113 | 6 | 2 | 4 | 116 | 60 | 151 | 3.17e-49 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222500 | sp|Q6NYP0|TM208_DANRE | 32.231 | 121 | 57 | 4 | 6 | 126 | 68 | 163 | 8.07e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1222500 | Msa1222620 | 0.826199 | 3.093353e-54 | -8.615850e-47 |
| Msa1222500 | Msa1334130 | 0.835613 | 1.515513e-56 | -8.615850e-47 |
| Msa1222500 | Msa1334150 | 0.846111 | 2.666852e-59 | -8.615850e-47 |
| Msa1222500 | Msa1334160 | 0.828604 | 8.199596e-55 | -8.615850e-47 |
| Msa1222500 | Msa1334190 | 0.804713 | 1.893167e-49 | -8.615850e-47 |
| Msa1222500 | Msa1334250 | 0.829993 | 3.771395e-55 | -8.615850e-47 |
| Msa1222500 | Msa1416560 | 0.830870 | 2.301684e-55 | -8.615850e-47 |
| Msa1222500 | Msa1416570 | 0.899003 | 3.046010e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222500 | MtrunA17_Chr4g0073431 | 76.106 | 113 | 6 | 2 | 4 | 116 | 60 | 151 | 2.91e-53 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222500 | AT2G23940.2 | 57.983 | 119 | 29 | 2 | 4 | 122 | 60 | 157 | 3.38e-42 | 137 |
| Msa1222500 | AT2G23940.1 | 57.983 | 119 | 29 | 2 | 4 | 122 | 60 | 157 | 3.38e-42 | 137 |
| Msa1222500 | AT2G23940.3 | 57.983 | 119 | 29 | 2 | 4 | 122 | 60 | 157 | 3.38e-42 | 137 |
| Msa1222500 | AT4G30500.1 | 56.303 | 119 | 31 | 2 | 4 | 122 | 60 | 157 | 1.10e-38 | 128 |
Find 53 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGTATGCCCATCTATTT+AGG | 0.107075 | 8_1:-86754829 | Msa1222500:three_prime_UTR |
| CTCCATCAATCTTGGATAAT+TGG | 0.115218 | 8_1:+86754926 | None:intergenic |
| CAATCCTTTGGCTTGATTAA+AGG | 0.155831 | 8_1:-86755189 | Msa1222500:CDS |
| TTCGTATGCCCATCTATTTA+GGG | 0.332204 | 8_1:-86754828 | Msa1222500:three_prime_UTR |
| GTCCTTGACAAACTTAGGTT+TGG | 0.351814 | 8_1:+86754997 | None:intergenic |
| TAGAAGCTGGGTGGTTGAAA+TGG | 0.372509 | 8_1:-86754769 | Msa1222500:three_prime_UTR |
| TTTACACAATTTATAGAAGC+TGG | 0.374779 | 8_1:-86754782 | Msa1222500:three_prime_UTR |
| ATCTAAAAGTTCACCGTCTT+CGG | 0.382362 | 8_1:+86757258 | None:intergenic |
| CCATCATCTCTGGAAAGTTC+TGG | 0.397340 | 8_1:-86756352 | Msa1222500:CDS |
| AACTTTCCTTTCAGCTTAAG+TGG | 0.398406 | 8_1:+86754710 | None:intergenic |
| TCCATCAATCTTGGATAATT+GGG | 0.400313 | 8_1:+86754927 | None:intergenic |
| TTTGGAGCATACCAATCCTT+TGG | 0.411793 | 8_1:-86755201 | Msa1222500:CDS |
| CTCTTAGCAAGTTGTTGATA+AGG | 0.418423 | 8_1:+86757298 | None:intergenic |
| GTAAAACCCTCCATCAATCT+TGG | 0.421219 | 8_1:+86754918 | None:intergenic |
| ATGACCCTGGTGAAGTTTGC+GGG | 0.437791 | 8_1:-86757223 | Msa1222500:CDS |
| CTTATCAACAACTTGCTAAG+AGG | 0.440577 | 8_1:-86757297 | Msa1222500:CDS |
| AACTAGATAGTTTGCTGGAA+TGG | 0.441773 | 8_1:-86754971 | Msa1222500:three_prime_UTR |
| TCTTAGCAAGTTGTTGATAA+GGG | 0.441838 | 8_1:+86757299 | None:intergenic |
| AACTTCTTACCAAGTGCTTA+CGG | 0.447367 | 8_1:+86757164 | None:intergenic |
| ACATGTCAGATACCAGCATT+TGG | 0.452980 | 8_1:-86755219 | Msa1222500:intron |
| CAAGTCGCTTCCATCATCTC+TGG | 0.460619 | 8_1:-86756362 | Msa1222500:CDS |
| GAGGGAAAAGATGGAGAAGA+AGG | 0.464994 | 8_1:-86755023 | Msa1222500:CDS |
| ACATGAACTAGATAGTTTGC+TGG | 0.470194 | 8_1:-86754976 | Msa1222500:three_prime_UTR |
| TGAAAAGACCCCGCAAGAAG+AGG | 0.473639 | 8_1:-86755042 | Msa1222500:CDS |
| CCAGAACTTTCCAGAGATGA+TGG | 0.477172 | 8_1:+86756352 | None:intergenic |
| TTCATGTCCTTGACAAACTT+AGG | 0.479486 | 8_1:+86754992 | None:intergenic |
| ACCCAATTATCCAAGATTGA+TGG | 0.502312 | 8_1:-86754928 | Msa1222500:three_prime_UTR |
| CCGCAAGAAGAGGGAAAAGA+TGG | 0.502355 | 8_1:-86755032 | Msa1222500:CDS |
| TCATACCCGCAAACTTCACC+AGG | 0.504556 | 8_1:+86757218 | None:intergenic |
| GAAAAGACCCCGCAAGAAGA+GGG | 0.506545 | 8_1:-86755041 | Msa1222500:CDS |
| AAATAGATGGGCATACGAAA+AGG | 0.507038 | 8_1:+86754832 | None:intergenic |
| GATTGGTATGCTCCAAATGC+TGG | 0.509174 | 8_1:+86755207 | None:intergenic |
| TTACACAATTTATAGAAGCT+GGG | 0.517313 | 8_1:-86754781 | Msa1222500:three_prime_UTR |
| AGCTGAAAGGAAAGTTCTAT+CGG | 0.519069 | 8_1:-86754703 | None:intergenic |
| TATGACCCTGGTGAAGTTTG+CGG | 0.525962 | 8_1:-86757224 | Msa1222500:CDS |
| TAAAGATCTCCGTAAGCACT+TGG | 0.536968 | 8_1:-86757173 | Msa1222500:CDS |
| TCACCGTCTTCGGTATAGCT+AGG | 0.541241 | 8_1:+86757268 | None:intergenic |
| TTATCAACAACTTGCTAAGA+GGG | 0.546463 | 8_1:-86757296 | Msa1222500:CDS |
| CTTTAATCAAGCCAAAGGAT+TGG | 0.550609 | 8_1:+86755190 | None:intergenic |
| GGTATGACTGTCTTGTCTTG+TGG | 0.556549 | 8_1:-86757202 | Msa1222500:CDS |
| TTGAAATGGAGAAGAGCCTC+AGG | 0.558437 | 8_1:-86754755 | Msa1222500:three_prime_UTR |
| AAATCCTTTAATCAAGCCAA+AGG | 0.579388 | 8_1:+86755185 | None:intergenic |
| CAATTATCCAAGATTGATGG+AGG | 0.583920 | 8_1:-86754925 | Msa1222500:three_prime_UTR |
| AAAGTACCACTTAAGCTGAA+AGG | 0.593672 | 8_1:-86754716 | Msa1222500:three_prime_UTR |
| AAGCCTAGCTATACCGAAGA+CGG | 0.617809 | 8_1:-86757271 | Msa1222500:CDS |
| GTTCTGGTACATATATCTTG+TGG | 0.618251 | 8_1:-86756336 | Msa1222500:intron |
| ATCCAAACCTAAGTTTGTCA+AGG | 0.624101 | 8_1:-86754999 | Msa1222500:exon |
| AATTATCCAAGATTGATGGA+GGG | 0.626335 | 8_1:-86754924 | Msa1222500:three_prime_UTR |
| CACAATTTATAGAAGCTGGG+TGG | 0.646877 | 8_1:-86754778 | Msa1222500:three_prime_UTR |
| GACCATACCTCTGAACCTTG+TGG | 0.656239 | 8_1:+86755159 | None:intergenic |
| TGAACATGAGAAACTAACTC+AGG | 0.660538 | 8_1:+86754862 | None:intergenic |
| CTTATCGCACAAAACACCTG+AGG | 0.671204 | 8_1:+86754739 | None:intergenic |
| CATACCCGCAAACTTCACCA+GGG | 0.781463 | 8_1:+86757219 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGTTAAAATTTTATCT+TGG | - | chr8_1:86754874-86754893 | Msa1222500:three_prime_UTR | 10.0% |
| !!! | TCTCTTTTAATTATTAATAA+AGG | + | chr8_1:86756739-86756758 | None:intergenic | 10.0% |
| !!! | TCCATAAACTTATTTTAATA+GGG | - | chr8_1:86755078-86755097 | Msa1222500:intron | 15.0% |
| !! | GTTTATTTATGAATTATATC+AGG | - | chr8_1:86756582-86756601 | Msa1222500:intron | 15.0% |
| !!! | TTCCAAAAAGTATATATTTT+TGG | + | chr8_1:86756671-86756690 | None:intergenic | 15.0% |
| !! | TTAAAGTTGTAATCAATATT+GGG | - | chr8_1:86756692-86756711 | Msa1222500:intron | 15.0% |
| !!! | CTCCATAAACTTATTTTAAT+AGG | - | chr8_1:86755077-86755096 | Msa1222500:intron | 20.0% |
| !! | TCCCTATTAAAATAAGTTTA+TGG | + | chr8_1:86755082-86755101 | None:intergenic | 20.0% |
| !!! | CTCCAAAAATATATACTTTT+TGG | - | chr8_1:86756666-86756685 | Msa1222500:intron | 20.0% |
| !! | GTTAAAGTTGTAATCAATAT+TGG | - | chr8_1:86756691-86756710 | Msa1222500:intron | 20.0% |
| !! | ATATTGGGACATATATAAAA+TGG | - | chr8_1:86756707-86756726 | Msa1222500:intron | 20.0% |
| !!! | ACTTTTTCATTAAGCTTACA+GGG | - | chr8_1:86755040-86755059 | Msa1222500:CDS | 25.0% |
| !!! | TCATTTTAGTTTCCGTAAAA+TGG | + | chr8_1:86755304-86755323 | None:intergenic | 25.0% |
| !! | AAGTGTTGTGTATATATTGT+AGG | - | chr8_1:86755407-86755426 | Msa1222500:intron | 25.0% |
| ! | CTTCGATTATCTATATAGTT+TGG | + | chr8_1:86755522-86755541 | None:intergenic | 25.0% |
| ! | TTATTAAGTAACCTTATGCT+TGG | - | chr8_1:86755833-86755852 | Msa1222500:intron | 25.0% |
| ! | ATAAAGATCTATCATCTACA+AGG | - | chr8_1:86755955-86755974 | Msa1222500:intron | 25.0% |
| ! | ACTAATTATTTGCCATAAAG+AGG | - | chr8_1:86756020-86756039 | Msa1222500:intron | 25.0% |
| !! | TATTGGAGAATGATTTTTGA+GGG | - | chr8_1:86756174-86756193 | Msa1222500:intron | 25.0% |
| ! | AGTAAATCTAATGAACCTTT+AGG | + | chr8_1:86756398-86756417 | None:intergenic | 25.0% |
| !!! | TCTTGGTAATTTTCACTTTT+AGG | - | chr8_1:86756884-86756903 | Msa1222500:intron | 25.0% |
| !! | TTTTCTTTCCCTAAATAGAT+GGG | + | chr8_1:86757199-86757218 | None:intergenic | 25.0% |
| ! | TTTACACAATTTATAGAAGC+TGG | - | chr8_1:86757234-86757253 | Msa1222500:CDS | 25.0% |
| ! | TTACACAATTTATAGAAGCT+GGG | - | chr8_1:86757235-86757254 | Msa1222500:CDS | 25.0% |
| ! | TCTTAGCAAGTTGTTGATAA+GGG | + | chr8_1:86754720-86754739 | None:intergenic | 30.0% |
| !! | TTATCAACAACTTGCTAAGA+GGG | - | chr8_1:86754720-86754739 | Msa1222500:three_prime_UTR | 30.0% |
| TGTAAGCTTATAGGTCTAAA+GGG | + | chr8_1:86755017-86755036 | None:intergenic | 30.0% | |
| TTGTAAGCTTATAGGTCTAA+AGG | + | chr8_1:86755018-86755037 | None:intergenic | 30.0% | |
| TTTAGACCTATAAGCTTACA+AGG | - | chr8_1:86755017-86755036 | Msa1222500:CDS | 30.0% | |
| AAAAGTCCTTGTAAGCTTAT+AGG | + | chr8_1:86755026-86755045 | None:intergenic | 30.0% | |
| !!! | GACTTTTTCATTAAGCTTAC+AGG | - | chr8_1:86755039-86755058 | Msa1222500:CDS | 30.0% |
| ! | CTAATCCAAATTGTGTCTTT+TGG | - | chr8_1:86755121-86755140 | Msa1222500:intron | 30.0% |
| TGATACCAAAAGACACAATT+TGG | + | chr8_1:86755129-86755148 | None:intergenic | 30.0% | |
| TTATAGTTTATCTGTGCCAA+TGG | - | chr8_1:86755169-86755188 | Msa1222500:CDS | 30.0% | |
| AGACTAAGTCAAAAAACCAT+TGG | + | chr8_1:86755188-86755207 | None:intergenic | 30.0% | |
| !! | GGGTATTTTTGTGAATAACA+TGG | - | chr8_1:86755226-86755245 | Msa1222500:intron | 30.0% |
| TTTGTGAATAACATGGTACT+CGG | - | chr8_1:86755233-86755252 | Msa1222500:intron | 30.0% | |
| !!! | GTGGTTTACTTTTAGAATGT+AGG | - | chr8_1:86755749-86755768 | Msa1222500:intron | 30.0% |
| !!! | GTGGTTTACTTTTAGAATGT+AGG | - | chr8_1:86755749-86755768 | Msa1222500:intron | 30.0% |
| ! | ATTTTTACTTCCCTCAAATG+AGG | + | chr8_1:86756152-86756171 | None:intergenic | 30.0% |
| GAGGGAAGTAAAAATTGTAT+TGG | - | chr8_1:86756157-86756176 | Msa1222500:intron | 30.0% | |
| ! | GTATTGGAGAATGATTTTTG+AGG | - | chr8_1:86756173-86756192 | Msa1222500:intron | 30.0% |
| !! | AGAATGATTTTTGAGGGTTT+GGG | - | chr8_1:86756180-86756199 | Msa1222500:intron | 30.0% |
| TTTACTTATTAGTGCATGTC+TGG | - | chr8_1:86756412-86756431 | Msa1222500:intron | 30.0% | |
| AAATCCTTTAATCAAGCCAA+AGG | + | chr8_1:86756834-86756853 | None:intergenic | 30.0% | |
| ! | ATTAAAGGATTTTTGCCACA+AGG | - | chr8_1:86756842-86756861 | Msa1222500:intron | 30.0% |
| TATTACTATGAACCTTTCTG+TGG | + | chr8_1:86756910-86756929 | None:intergenic | 30.0% | |
| ! | TGTGTATGCATTTTGTGATT+AGG | - | chr8_1:86756938-86756957 | Msa1222500:intron | 30.0% |
| ! | TGCATTTTGTGATTAGGAAT+CGG | - | chr8_1:86756944-86756963 | Msa1222500:intron | 30.0% |
| TCCATCAATCTTGGATAATT+GGG | + | chr8_1:86757092-86757111 | None:intergenic | 30.0% | |
| AATTATCCAAGATTGATGGA+GGG | - | chr8_1:86757092-86757111 | Msa1222500:intron | 30.0% | |
| ! | GTTTTCTTTCCCTAAATAGA+TGG | + | chr8_1:86757200-86757219 | None:intergenic | 30.0% |
| CTCTTAGCAAGTTGTTGATA+AGG | + | chr8_1:86754721-86754740 | None:intergenic | 35.0% | |
| !! | CTTATCAACAACTTGCTAAG+AGG | - | chr8_1:86754719-86754738 | Msa1222500:three_prime_UTR | 35.0% |
| ATCTAAAAGTTCACCGTCTT+CGG | + | chr8_1:86754761-86754780 | None:intergenic | 35.0% | |
| AACTTCTTACCAAGTGCTTA+CGG | + | chr8_1:86754855-86754874 | None:intergenic | 35.0% | |
| TCTAAAGGGATGAGTTAAAC+AGG | + | chr8_1:86755003-86755022 | None:intergenic | 35.0% | |
| !! | TGGATTAGCTTCTAACTTAC+AGG | + | chr8_1:86755109-86755128 | None:intergenic | 35.0% |
| ! | GTCTTCTGTAGTTTTTCTGT+CGG | - | chr8_1:86755204-86755223 | Msa1222500:CDS | 35.0% |
| ! | TCTTCTGTAGTTTTTCTGTC+GGG | - | chr8_1:86755205-86755224 | Msa1222500:CDS | 35.0% |
| ! | GAACTGTACTCTCCATTTTA+CGG | - | chr8_1:86755289-86755308 | Msa1222500:intron | 35.0% |
| TTTCTGCCATCATGCAAAAA+TGG | - | chr8_1:86755343-86755362 | Msa1222500:intron | 35.0% | |
| ! | ATGAGCCTAAAACTTGTTCA+TGG | - | chr8_1:86755457-86755476 | Msa1222500:intron | 35.0% |
| ! | TCTGACCATGAACAAGTTTT+AGG | + | chr8_1:86755465-86755484 | None:intergenic | 35.0% |
| GATAATTCTTCACTTACTGC+TGG | - | chr8_1:86755581-86755600 | Msa1222500:intron | 35.0% | |
| GTTCTGGTACATATATCTTG+TGG | - | chr8_1:86755680-86755699 | Msa1222500:intron | 35.0% | |
| ! | ACATTTTTGTGCCAAGCATA+AGG | + | chr8_1:86755731-86755750 | None:intergenic | 35.0% |
| TTATGCTTGGCACAAAAATG+TGG | - | chr8_1:86755730-86755749 | Msa1222500:intron | 35.0% | |
| ! | TAAGACTACGTTCTTTGAAG+TGG | + | chr8_1:86755816-86755835 | None:intergenic | 35.0% |
| ! | ACATTTTTGTGCCAAGCATA+AGG | + | chr8_1:86755731-86755750 | None:intergenic | 35.0% |
| TTATGCTTGGCACAAAAATG+TGG | - | chr8_1:86755730-86755749 | Msa1222500:intron | 35.0% | |
| !! | TTCTTTGAAGTGGTACCAAT+TGG | + | chr8_1:86755922-86755941 | None:intergenic | 35.0% |
| CCATAAAGAGGAGTTATCTA+GGG | - | chr8_1:86756032-86756051 | Msa1222500:intron | 35.0% | |
| ! | TATCTAGGGCTTTGGTAAAA+AGG | - | chr8_1:86756046-86756065 | Msa1222500:intron | 35.0% |
| GGTAAAAAGGAAAGAGTAAG+TGG | - | chr8_1:86756059-86756078 | Msa1222500:intron | 35.0% | |
| TACAAAATCCTCCTCATTTG+AGG | - | chr8_1:86756138-86756157 | Msa1222500:intron | 35.0% | |
| ACAAAATCCTCCTCATTTGA+GGG | - | chr8_1:86756139-86756158 | Msa1222500:intron | 35.0% | |
| !! | GAGAATGATTTTTGAGGGTT+TGG | - | chr8_1:86756179-86756198 | Msa1222500:intron | 35.0% |
| !! | GAATGATTTTTGAGGGTTTG+GGG | - | chr8_1:86756181-86756200 | Msa1222500:intron | 35.0% |
| !! | AATGATTTTTGAGGGTTTGG+GGG | - | chr8_1:86756182-86756201 | Msa1222500:intron | 35.0% |
| ! | CTTTGGAGGTGGAAAATATA+GGG | + | chr8_1:86756343-86756362 | None:intergenic | 35.0% |
| !! | TGAACCTTTAGGCTTTGTTT+GGG | + | chr8_1:86756387-86756406 | None:intergenic | 35.0% |
| !! | ATGAACCTTTAGGCTTTGTT+TGG | + | chr8_1:86756388-86756407 | None:intergenic | 35.0% |
| AGCAACAAACTTGAAGGAAA+AGG | - | chr8_1:86756471-86756490 | Msa1222500:intron | 35.0% | |
| GCAACAAACTTGAAGGAAAA+GGG | - | chr8_1:86756472-86756491 | Msa1222500:intron | 35.0% | |
| AAACTTGAAGGAAAAGGGAT+TGG | - | chr8_1:86756477-86756496 | Msa1222500:intron | 35.0% | |
| AACTTGAAGGAAAAGGGATT+GGG | - | chr8_1:86756478-86756497 | Msa1222500:intron | 35.0% | |
| CTTTAATCAAGCCAAAGGAT+TGG | + | chr8_1:86756829-86756848 | None:intergenic | 35.0% | |
| !! | CAATCCTTTGGCTTGATTAA+AGG | - | chr8_1:86756827-86756846 | Msa1222500:intron | 35.0% |
| ATCCAAACCTAAGTTTGTCA+AGG | - | chr8_1:86757017-86757036 | Msa1222500:intron | 35.0% | |
| TTCATGTCCTTGACAAACTT+AGG | + | chr8_1:86757027-86757046 | None:intergenic | 35.0% | |
| ! | ACATGAACTAGATAGTTTGC+TGG | - | chr8_1:86757040-86757059 | Msa1222500:intron | 35.0% |
| !! | AACTAGATAGTTTGCTGGAA+TGG | - | chr8_1:86757045-86757064 | Msa1222500:intron | 35.0% |
| ACCCAATTATCCAAGATTGA+TGG | - | chr8_1:86757088-86757107 | Msa1222500:intron | 35.0% | |
| CTCCATCAATCTTGGATAAT+TGG | + | chr8_1:86757093-86757112 | None:intergenic | 35.0% | |
| CAATTATCCAAGATTGATGG+AGG | - | chr8_1:86757091-86757110 | Msa1222500:intron | 35.0% | |
| TGAACATGAGAAACTAACTC+AGG | + | chr8_1:86757157-86757176 | None:intergenic | 35.0% | |
| AAATAGATGGGCATACGAAA+AGG | + | chr8_1:86757187-86757206 | None:intergenic | 35.0% | |
| TTTCGTATGCCCATCTATTT+AGG | - | chr8_1:86757187-86757206 | Msa1222500:CDS | 35.0% | |
| TTCGTATGCCCATCTATTTA+GGG | - | chr8_1:86757188-86757207 | Msa1222500:CDS | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | - | chr8_1:86757300-86757319 | Msa1222500:CDS | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | + | chr8_1:86757309-86757328 | None:intergenic | 35.0% | |
| ! | GAAGACGGTGAACTTTTAGA+TGG | - | chr8_1:86754760-86754779 | Msa1222500:three_prime_UTR | 40.0% |
| TAAAGATCTCCGTAAGCACT+TGG | - | chr8_1:86754843-86754862 | Msa1222500:three_prime_UTR | 40.0% | |
| ! | AGCTTACAGGGAGTTTTTCA+TGG | - | chr8_1:86755052-86755071 | Msa1222500:CDS | 40.0% |
| ! | GCTTACAGGGAGTTTTTCAT+GGG | - | chr8_1:86755053-86755072 | Msa1222500:CDS | 40.0% |
| ! | CTTCTGTAGTTTTTCTGTCG+GGG | - | chr8_1:86755206-86755225 | Msa1222500:CDS | 40.0% |
| !!! | TGTCAGCCATTTTTGCATGA+TGG | + | chr8_1:86755352-86755371 | None:intergenic | 40.0% |
| ATATTGTAGGCTGTAGCCTA+TGG | - | chr8_1:86755420-86755439 | Msa1222500:intron | 40.0% | |
| TAGCCTATGGAATTTGGTCT+CGG | - | chr8_1:86755433-86755452 | Msa1222500:intron | 40.0% | |
| TCATGGTCAGATAATCCTGT+AGG | - | chr8_1:86755474-86755493 | Msa1222500:intron | 40.0% | |
| TCAGATAATCCTGTAGGTCT+AGG | - | chr8_1:86755480-86755499 | Msa1222500:intron | 40.0% | |
| CAGATAATCCTGTAGGTCTA+GGG | - | chr8_1:86755481-86755500 | Msa1222500:intron | 40.0% | |
| AAGGTTACTTAGGAGCAGAA+TGG | + | chr8_1:86755712-86755731 | None:intergenic | 40.0% | |
| CTCCTAAGTAACCTTATGCT+TGG | - | chr8_1:86755717-86755736 | Msa1222500:intron | 40.0% | |
| TGCCAAGCATAAGGTTACTT+AGG | + | chr8_1:86755722-86755741 | None:intergenic | 40.0% | |
| TTGTAGTCACACACTCCAAT+TGG | - | chr8_1:86755788-86755807 | Msa1222500:intron | 40.0% | |
| !! | TTCTTTGAAGTGGTGCCAAT+TGG | + | chr8_1:86755806-86755825 | None:intergenic | 40.0% |
| TTGTAGTCACACACTCCAAT+TGG | - | chr8_1:86755788-86755807 | Msa1222500:intron | 40.0% | |
| ! | CAAGACTACGTTCTTTGAAG+TGG | + | chr8_1:86755932-86755951 | None:intergenic | 40.0% |
| CACTTCAAAGAACGTAGTCT+TGG | - | chr8_1:86755814-86755833 | Msa1222500:intron | 40.0% | |
| GATCTATCATCTACAAGGCT+TGG | - | chr8_1:86755960-86755979 | Msa1222500:intron | 40.0% | |
| GCCATAAAGAGGAGTTATCT+AGG | - | chr8_1:86756031-86756050 | Msa1222500:intron | 40.0% | |
| CCCTAGATAACTCCTCTTTA+TGG | + | chr8_1:86756035-86756054 | None:intergenic | 40.0% | |
| AGAGTAAGTGGAAGAAACAG+AGG | - | chr8_1:86756071-86756090 | Msa1222500:intron | 40.0% | |
| AAGAAACAGAGGACTTTGAG+AGG | - | chr8_1:86756082-86756101 | Msa1222500:intron | 40.0% | |
| TTTACTTCCCTCAAATGAGG+AGG | + | chr8_1:86756149-86756168 | None:intergenic | 40.0% | |
| !! | ATGATTTTTGAGGGTTTGGG+GGG | - | chr8_1:86756183-86756202 | Msa1222500:intron | 40.0% |
| !! | GCTTTGGAGGTGGAAAATAT+AGG | + | chr8_1:86756344-86756363 | None:intergenic | 40.0% |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | + | chr8_1:86756380-86756399 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAA+AGG | - | chr8_1:86756380-86756399 | Msa1222500:CDS | 40.0% | |
| !! | CCTTCAAGTTTGTTGCTTTC+TGG | + | chr8_1:86756468-86756487 | None:intergenic | 40.0% |
| CCAGAAAGCAACAAACTTGA+AGG | - | chr8_1:86756465-86756484 | Msa1222500:intron | 40.0% | |
| GTGTTCTGTACAATCAACTG+TGG | - | chr8_1:86756604-86756623 | Msa1222500:intron | 40.0% | |
| TCTGTACAATCAACTGTGGT+TGG | - | chr8_1:86756608-86756627 | Msa1222500:intron | 40.0% | |
| CTGTACAATCAACTGTGGTT+GGG | - | chr8_1:86756609-86756628 | Msa1222500:intron | 40.0% | |
| GGTATCTGACATGTCATGAA+GGG | + | chr8_1:86756791-86756810 | None:intergenic | 40.0% | |
| TGGTATCTGACATGTCATGA+AGG | + | chr8_1:86756792-86756811 | None:intergenic | 40.0% | |
| ACATGTCAGATACCAGCATT+TGG | - | chr8_1:86756797-86756816 | Msa1222500:intron | 40.0% | |
| ! | TTTGGAGCATACCAATCCTT+TGG | - | chr8_1:86756815-86756834 | Msa1222500:intron | 40.0% |
| ! | ATTTTTGCCACAAGGTTCAG+AGG | - | chr8_1:86756850-86756869 | Msa1222500:intron | 40.0% |
| !! | TTCACTTTTAGGCCACAGAA+AGG | - | chr8_1:86756895-86756914 | Msa1222500:intron | 40.0% |
| GTCCTTGACAAACTTAGGTT+TGG | + | chr8_1:86757022-86757041 | None:intergenic | 40.0% | |
| GTAAAACCCTCCATCAATCT+TGG | + | chr8_1:86757101-86757120 | None:intergenic | 40.0% | |
| CACAATTTATAGAAGCTGGG+TGG | - | chr8_1:86757238-86757257 | Msa1222500:CDS | 40.0% | |
| AAGCCTAGCTATACCGAAGA+CGG | - | chr8_1:86754745-86754764 | Msa1222500:three_prime_UTR | 45.0% | |
| ! | GACGGTGAACTTTTAGATGG+TGG | - | chr8_1:86754763-86754782 | Msa1222500:three_prime_UTR | 45.0% |
| !!! | TGGTGGTTTTGATATGACCC+TGG | - | chr8_1:86754780-86754799 | Msa1222500:three_prime_UTR | 45.0% |
| TATGACCCTGGTGAAGTTTG+CGG | - | chr8_1:86754792-86754811 | Msa1222500:three_prime_UTR | 45.0% | |
| GGTATGACTGTCTTGTCTTG+TGG | - | chr8_1:86754814-86754833 | Msa1222500:three_prime_UTR | 45.0% | |
| AGGCTGTAGCCTATGGAATT+TGG | - | chr8_1:86755427-86755446 | Msa1222500:intron | 45.0% | |
| AGCCTATGGAATTTGGTCTC+GGG | - | chr8_1:86755434-86755453 | Msa1222500:intron | 45.0% | |
| ATCCCGAGACCAAATTCCAT+AGG | + | chr8_1:86755439-86755458 | None:intergenic | 45.0% | |
| TAAGAGTTCCCTAGACCTAC+AGG | + | chr8_1:86755492-86755511 | None:intergenic | 45.0% | |
| CCAGAACTTTCCAGAGATGA+TGG | + | chr8_1:86755667-86755686 | None:intergenic | 45.0% | |
| ! | CCATCATCTCTGGAAAGTTC+TGG | - | chr8_1:86755664-86755683 | Msa1222500:intron | 45.0% |
| ! | AGAGGAGTTATCTAGGGCTT+TGG | - | chr8_1:86756038-86756057 | Msa1222500:intron | 45.0% |
| ! | ACTTTGAGAGGAGAGAGCTT+TGG | - | chr8_1:86756094-86756113 | Msa1222500:intron | 45.0% |
| ! | CTTTGAGAGGAGAGAGCTTT+GGG | - | chr8_1:86756095-86756114 | Msa1222500:intron | 45.0% |
| TTTGAGAGGAGAGAGCTTTG+GGG | - | chr8_1:86756096-86756115 | Msa1222500:intron | 45.0% | |
| !! | TGATTTTTGAGGGTTTGGGG+GGG | - | chr8_1:86756184-86756203 | Msa1222500:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr8_1:86756375-86756394 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr8_1:86756376-86756395 | None:intergenic | 45.0% |
| CCATTGTGAGAGAAGTCACT+AGG | + | chr8_1:86756555-86756574 | None:intergenic | 45.0% | |
| CCTAGTGACTTCTCTCACAA+TGG | - | chr8_1:86756552-86756571 | Msa1222500:intron | 45.0% | |
| TGCAACAACCTTCACTGACA+CGG | - | chr8_1:86756760-86756779 | Msa1222500:intron | 45.0% | |
| GATTGGTATGCTCCAAATGC+TGG | + | chr8_1:86756812-86756831 | None:intergenic | 45.0% | |
| ! | ATCTTTTCCCTCTTCTTGCG+GGG | + | chr8_1:86756985-86757004 | None:intergenic | 45.0% |
| ! | CATCTTTTCCCTCTTCTTGC+GGG | + | chr8_1:86756986-86757005 | None:intergenic | 45.0% |
| ! | CCATCTTTTCCCTCTTCTTG+CGG | + | chr8_1:86756987-86757006 | None:intergenic | 45.0% |
| GAGGGAAAAGATGGAGAAGA+AGG | - | chr8_1:86756993-86757012 | Msa1222500:intron | 45.0% | |
| TAGAAGCTGGGTGGTTGAAA+TGG | - | chr8_1:86757247-86757266 | Msa1222500:CDS | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | - | chr8_1:86757261-86757280 | Msa1222500:CDS | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | + | chr8_1:86757280-86757299 | None:intergenic | 45.0% | |
| TCACCGTCTTCGGTATAGCT+AGG | + | chr8_1:86754751-86754770 | None:intergenic | 50.0% | |
| ATGACCCTGGTGAAGTTTGC+GGG | - | chr8_1:86754793-86754812 | Msa1222500:three_prime_UTR | 50.0% | |
| CATACCCGCAAACTTCACCA+GGG | + | chr8_1:86754800-86754819 | None:intergenic | 50.0% | |
| TCATACCCGCAAACTTCACC+AGG | + | chr8_1:86754801-86754820 | None:intergenic | 50.0% | |
| CAAGTCGCTTCCATCATCTC+TGG | - | chr8_1:86755654-86755673 | Msa1222500:intron | 50.0% | |
| ! | TTGAGAGGAGAGAGCTTTGG+GGG | - | chr8_1:86756097-86756116 | Msa1222500:intron | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr8_1:86756377-86756396 | None:intergenic | 50.0% |
| AAGGGATTGGGTCGCTAAAC+AGG | - | chr8_1:86756490-86756509 | Msa1222500:intron | 50.0% | |
| TGCCACAAGGTTCAGAGGTA+TGG | - | chr8_1:86756855-86756874 | Msa1222500:intron | 50.0% | |
| GACCATACCTCTGAACCTTG+TGG | + | chr8_1:86756860-86756879 | None:intergenic | 50.0% | |
| ! | CAGAGGTATGGTCAACGTCT+TGG | - | chr8_1:86756867-86756886 | Msa1222500:intron | 50.0% |
| TGAAAAGACCCCGCAAGAAG+AGG | - | chr8_1:86756974-86756993 | Msa1222500:intron | 50.0% | |
| GAAAAGACCCCGCAAGAAGA+GGG | - | chr8_1:86756975-86756994 | Msa1222500:intron | 50.0% | |
| CCGCAAGAAGAGGGAAAAGA+TGG | - | chr8_1:86756984-86757003 | Msa1222500:intron | 50.0% | |
| !! | TGAGAGGAGAGAGCTTTGGG+GGG | - | chr8_1:86756098-86756117 | Msa1222500:intron | 55.0% |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr8_1:86756372-86756391 | None:intergenic | 55.0% | |
| GGATTGGGTCGCTAAACAGG+AGG | - | chr8_1:86756493-86756512 | Msa1222500:intron | 55.0% | |
| TTGGGTCGCTAAACAGGAGG+AGG | - | chr8_1:86756496-86756515 | Msa1222500:intron | 55.0% | |
| GGAGTTTGGAGGGGAGGAGA+GGG | + | chr8_1:86756366-86756385 | None:intergenic | 60.0% | |
| GGGAGCAACCGTGTCAGTGA+AGG | + | chr8_1:86756771-86756790 | None:intergenic | 60.0% | |
| !! | GGAGGAGAGGGCTTTGGAGG+TGG | + | chr8_1:86756354-86756373 | None:intergenic | 65.0% |
| ! | AGGGGAGGAGAGGGCTTTGG+AGG | + | chr8_1:86756357-86756376 | None:intergenic | 65.0% |
| TGGAGGGGAGGAGAGGGCTT+TGG | + | chr8_1:86756360-86756379 | None:intergenic | 65.0% | |
| GGGAGTTTGGAGGGGAGGAG+AGG | + | chr8_1:86756367-86756386 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 86754706 | 86757332 | 86754706 | ID=Msa1222500;Name=Msa1222500 |
| chr8_1 | mRNA | 86754706 | 86757332 | 86754706 | ID=Msa1222500-mRNA-1;Parent=Msa1222500;Name=Msa1222500-mRNA-1;_AED=0.24;_eAED=0.27;_QI=0|0.66|0.75|1|0.66|0.5|4|304|130 |
| chr8_1 | exon | 86754706 | 86755078 | 86754706 | ID=Msa1222500-mRNA-1:exon:31262;Parent=Msa1222500-mRNA-1 |
| chr8_1 | exon | 86755167 | 86755232 | 86755167 | ID=Msa1222500-mRNA-1:exon:31261;Parent=Msa1222500-mRNA-1 |
| chr8_1 | exon | 86756337 | 86756421 | 86756337 | ID=Msa1222500-mRNA-1:exon:31260;Parent=Msa1222500-mRNA-1 |
| chr8_1 | exon | 86757160 | 86757332 | 86757160 | ID=Msa1222500-mRNA-1:exon:31259;Parent=Msa1222500-mRNA-1 |
| chr8_1 | CDS | 86757160 | 86757332 | 86757160 | ID=Msa1222500-mRNA-1:cds;Parent=Msa1222500-mRNA-1 |
| chr8_1 | CDS | 86756337 | 86756421 | 86756337 | ID=Msa1222500-mRNA-1:cds;Parent=Msa1222500-mRNA-1 |
| chr8_1 | CDS | 86755167 | 86755232 | 86755167 | ID=Msa1222500-mRNA-1:cds;Parent=Msa1222500-mRNA-1 |
| chr8_1 | CDS | 86755010 | 86755078 | 86755010 | ID=Msa1222500-mRNA-1:cds;Parent=Msa1222500-mRNA-1 |
| chr8_1 | three_prime_UTR | 86754706 | 86755009 | 86754706 | ID=Msa1222500-mRNA-1:three_prime_utr;Parent=Msa1222500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
