AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334250 MtrunA17_Chr4g0061881 45.017 582 271 11 36 583 19 585 5.68e-150 449
Msa1334250 MtrunA17_Chr2g0307851 44.213 527 258 7 80 583 84 597 1.23e-142 430
Msa1334250 MtrunA17_Chr4g0069071 41.755 376 203 6 131 499 5 371 3.26e-77 251
Msa1334250 MtrunA17_Chr4g0073611 35.922 309 156 8 150 451 2 275 1.70e-48 171
Msa1334250 MtrunA17_Chr5g0408331 32.216 388 169 10 56 435 11 312 2.77e-46 166
Msa1334250 MtrunA17_Chr4g0061841 35.390 308 107 7 149 448 8 231 4.30e-45 160
Msa1334250 MtrunA17_Chr4g0076561 43.284 201 86 2 344 544 14 186 5.48e-45 158
Msa1334250 MtrunA17_Chr8g0344851 45.029 171 81 2 417 583 1 162 1.37e-36 135
Msa1334250 MtrunA17_Chr5g0437391 29.381 388 196 12 204 584 5 321 5.98e-36 138
Msa1334250 MtrunA17_Chr4g0061831 54.808 104 47 0 480 583 10 113 5.27e-35 128
Msa1334250 MtrunA17_Chr4g0064001 39.766 171 82 4 442 605 4 160 3.91e-28 112
Msa1334250 MtrunA17_Chr4g0076571 53.012 83 30 2 145 227 1 74 1.63e-22 92.4
Msa1334250 MtrunA17_Chr8g0344821 59.091 66 27 0 518 583 38 103 2.47e-22 92.8
Msa1334250 MtrunA17_Chr5g0437441 44.144 111 47 4 105 212 4 102 4.38e-21 88.6
Msa1334250 MtrunA17_Chr8g0344831 47.500 120 56 4 324 438 1 118 8.27e-21 88.6
Msa1334250 MtrunA17_Chr4g0073251 57.971 69 13 1 584 636 169 237 2.68e-18 85.5
Msa1334250 MtrunA17_Chr5g0437451 61.111 54 21 0 533 586 98 151 1.48e-16 77.4
Msa1334250 MtrunA17_Chr4g0069081 53.030 66 31 0 518 583 8 73 1.63e-16 75.9
Msa1334250 MtrunA17_Chr4g0073621 60.000 55 20 1 531 583 1 55 3.99e-15 70.9
Msa1334250 MtrunA17_Chr5g0408341 60.417 48 19 0 536 583 1 48 1.77e-12 65.1
Msa1334250 MtrunA17_Chr5g0447671 41.935 62 34 2 586 647 100 159 3.29e-12 65.5
Msa1334250 MtrunA17_Chr4g0063991 44.444 81 43 1 342 422 2 80 4.24e-12 62.4
Msa1334250 MtrunA17_Chr8g0389221 41.975 81 29 3 584 646 167 247 1.79e-11 65.1
Msa1334250 MtrunA17_Chr4g0030021 35.398 113 54 3 537 631 124 235 2.01e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334250 AT1G73990.1 42.694 527 266 8 80 583 90 603 1.79e-129 397
Msa1334250 AT1G73990.2 40.461 477 248 8 80 533 90 553 1.43e-104 330
Msa1334250 AT2G23810.1 45.455 77 26 1 584 644 170 246 1.20e-13 72.0
Msa1334250 AT3G45600.1 43.836 73 25 1 584 640 172 244 3.37e-12 68.2
Msa1334250 AT4G28050.1 43.421 76 28 1 584 644 170 245 6.39e-12 67.0
Msa1334250 AT4G30430.1 43.056 72 26 1 584 640 170 241 1.91e-11 65.5

Find 158 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTATTGAAACATTAAT+TGG 0.148691 8_4:+54585552 None:intergenic
GTGTCAAGAGCTTTGCTTTA+AGG 0.152698 8_4:+54585733 None:intergenic
AAGAAAATATATGAATATTT+TGG 0.176804 8_4:-54589161 Msa1334250:CDS
GCTGAGAAACTTACTATTAT+AGG 0.182398 8_4:-54589218 Msa1334250:CDS
GTTTGTGGAGCCATCGATTA+TGG 0.236591 8_4:-54589473 Msa1334250:CDS
GGATGGTGACAAGATTATTA+TGG 0.245096 8_4:-54589603 Msa1334250:CDS
TGGATTAGCTTCAGGGTTAA+TGG 0.250434 8_4:-54589624 Msa1334250:CDS
TATTAGCATGTAGATGATTT+AGG 0.257669 8_4:-54585980 Msa1334250:three_prime_UTR
AAGATCTAATTGGCTTGATA+TGG 0.258838 8_4:-54589735 Msa1334250:CDS
TACTAAGAGATCTTTGAAAA+AGG 0.265162 8_4:-54589867 Msa1334250:CDS
TATTGTTGGCTGATCAATTA+TGG 0.276033 8_4:-54589346 Msa1334250:CDS
CCATTGGTTGCTGTGCATTC+AGG 0.281802 8_4:-54586064 Msa1334250:CDS
ATTGTTCATTGCTGCCTTAC+CGG 0.295628 8_4:+54588941 None:intergenic
GAGAGTTCAACCAGATTAAT+AGG 0.301916 8_4:+54588840 None:intergenic
AAGCTCTTGACACAATTAAA+TGG 0.304664 8_4:-54585723 Msa1334250:three_prime_UTR
CAATTGAAGCACAAAACATT+TGG 0.314542 8_4:+54586165 None:intergenic
TTCGATTTCGTTCCGCTCTC+TGG 0.315989 8_4:-54590322 Msa1334250:CDS
TGTCAAGAGCTTTGCTTTAA+GGG 0.328140 8_4:+54585734 None:intergenic
CTTACTATTATAGGTTCAAT+TGG 0.329531 8_4:-54589209 Msa1334250:CDS
AGGCTAATATACCTCAAAAT+AGG 0.333847 8_4:-54588863 Msa1334250:CDS
AGGTATATTAGCCTTCAATT+TGG 0.345021 8_4:+54588872 None:intergenic
ATAGATTGTGGATTAGCTTC+AGG 0.355026 8_4:-54589632 Msa1334250:CDS
ATCGGTATTATTAGAGTTTG+TGG 0.362941 8_4:-54589488 Msa1334250:CDS
ATGGGTCTCAGTAAGAGATT+TGG 0.365012 8_4:-54589584 Msa1334250:CDS
TGTAGATGATTTAGGCCATT+TGG 0.369425 8_4:-54585972 Msa1334250:three_prime_UTR
TCAAAATAGGCCTATTAATC+TGG 0.371007 8_4:-54588850 Msa1334250:intron
TTCTCATCCTCTTCATCTTA+CGG 0.376793 8_4:-54590506 Msa1334250:CDS
ATATTCAATTTCAAGAAATC+TGG 0.381689 8_4:-54590046 Msa1334250:CDS
AATTGCAAATCTTGCGAGGC+TGG 0.383646 8_4:-54586147 Msa1334250:CDS
TAACAGAAGGGAAACCAGTT+TGG 0.383890 8_4:+54585819 None:intergenic
TGAAAAGCCTTAGGACTGAT+TGG 0.383930 8_4:-54586119 Msa1334250:CDS
AGATTGCCCAAGGGCGACTT+TGG 0.388070 8_4:-54588965 Msa1334250:CDS
AAGAAAGAGGTTCTTTCTAA+AGG 0.390182 8_4:-54589134 Msa1334250:CDS
TTGATATGGTTTCTTGTTCA+AGG 0.394731 8_4:-54589721 Msa1334250:CDS
AGGATGATATAAGATCTAAT+TGG 0.395182 8_4:-54589745 Msa1334250:CDS
CGATTATGGAGGTGATATAA+TGG 0.397941 8_4:-54589459 Msa1334250:CDS
AATTAATGTTTCAATAATCA+AGG 0.398099 8_4:-54585550 Msa1334250:three_prime_UTR
CTGTTGGTATATCAAATAGT+AGG 0.400153 8_4:-54589517 Msa1334250:CDS
AATTTAAGAGACATAATGTT+TGG 0.404784 8_4:+54585682 None:intergenic
TACCGGTCCAAAGTCGCCCT+TGG 0.405887 8_4:+54588958 None:intergenic
GTGGGCAAATATAAAATTGC+AGG 0.407744 8_4:-54589809 Msa1334250:CDS
TTGAGGGGTTTGTGAATTTG+AGG 0.427452 8_4:+54590478 None:intergenic
GATGGTGACAAGATTATTAT+GGG 0.430367 8_4:-54589602 Msa1334250:CDS
GCTGTGCATTCAGGAATAAC+AGG 0.437794 8_4:-54586055 Msa1334250:exon
ATGTTCCCATTCGATAAGAT+TGG 0.439661 8_4:+54589838 None:intergenic
TTAGACATGTTTGACCAAAC+TGG 0.440210 8_4:-54585833 Msa1334250:three_prime_UTR
GAGTCAAACTGCACTCAAAC+AGG 0.440848 8_4:+54585912 None:intergenic
ACCTGAGAGTCGGTGCCAAC+TGG 0.441099 8_4:+54590196 None:intergenic
GGTGCATATTTGATTGCAAC+TGG 0.441687 8_4:-54589257 Msa1334250:CDS
CTCATCTACACTTAATGATC+TGG 0.441800 8_4:+54588995 None:intergenic
TGATTATTGAAACATTAATT+GGG 0.443915 8_4:+54585553 None:intergenic
TAGATTGTGGATTAGCTTCA+GGG 0.444789 8_4:-54589631 Msa1334250:CDS
TATTTGATTGCAACTGGAGC+AGG 0.455192 8_4:-54589251 Msa1334250:CDS
GTAAGGCAGCAATGAACAAT+AGG 0.470115 8_4:-54588938 Msa1334250:CDS
ACCGGTCCAAAGTCGCCCTT+GGG 0.473423 8_4:+54588959 None:intergenic
ACCAGTTGGCACCGACTCTC+AGG 0.474513 8_4:-54590197 Msa1334250:CDS
CTGGCTTACTGAAAAGCCTT+AGG 0.478137 8_4:-54586128 Msa1334250:CDS
TGAGGGGTTTGTGAATTTGA+GGG 0.479572 8_4:+54590479 None:intergenic
TATCTGTCTTCTAATTTCAT+CGG 0.482157 8_4:+54590066 None:intergenic
CTTCTGTTAAATCAAGCTCT+TGG 0.483484 8_4:-54585805 Msa1334250:three_prime_UTR
AACAGTGTTGATTATTCGAC+CGG 0.483950 8_4:-54590349 Msa1334250:CDS
GATGAGAAATAAAGTGTGAA+TGG 0.486767 8_4:+54590521 None:intergenic
TCCAGGAGGGAATGTATTGT+TGG 0.487832 8_4:-54589360 Msa1334250:CDS
GCAGGCTTAAATTCAGATGA+AGG 0.489639 8_4:-54589791 Msa1334250:CDS
TCAAATAGTAGGGAAAATAT+CGG 0.490155 8_4:-54589506 Msa1334250:CDS
ATTGAGAATATCCGTAGGGT+TGG 0.499628 8_4:-54589425 Msa1334250:CDS
ACTGGCTGCCTCATCTGATA+AGG 0.501161 8_4:+54589280 None:intergenic
TTGAGAATATCCGTAGGGTT+GGG 0.501994 8_4:-54589424 Msa1334250:CDS
AACCAGCATATAAAACCAAA+TGG 0.502225 8_4:+54585957 None:intergenic
GAGGGGTTTGTGAATTTGAG+GGG 0.502643 8_4:+54590480 None:intergenic
GTGTGAATGGTTTGCGATGG+AGG 0.503001 8_4:+54590534 None:intergenic
TTAGACCAAGCATTACAGTC+AGG 0.509950 8_4:+54586192 None:intergenic
CCTTCTTCCAATCAGTCCTA+AGG 0.510848 8_4:+54586112 None:intergenic
CAAGAGCTTGATTTAACAGA+AGG 0.511460 8_4:+54585806 None:intergenic
GGAATAACAGGAGGGATGGT+TGG 0.513083 8_4:-54586043 Msa1334250:exon
GCCTCGGAGCGTGTCGAACA+TGG 0.517250 8_4:-54590262 Msa1334250:CDS
TCAACATTAGTGTACTCCAT+TGG 0.517441 8_4:-54586080 Msa1334250:CDS
GAATGTGAATGGTCTGTGAA+TGG 0.524062 8_4:+54590405 None:intergenic
CTGCACACCATCTTCGATTG+TGG 0.524754 8_4:-54590449 Msa1334250:CDS
TCAACACTGTTACCTTTACC+TGG 0.525067 8_4:+54590361 None:intergenic
AACCTCTACGATCTCTTCTC+CGG 0.527699 8_4:-54589912 Msa1334250:CDS
CATTCTTGCATCTAAGATAC+CGG 0.530035 8_4:-54589312 Msa1334250:CDS
TGCAATCAAATATGCACCAC+TGG 0.530834 8_4:+54589262 None:intergenic
TGTTGCTATAGCCAAATTGA+AGG 0.532127 8_4:-54588883 Msa1334250:CDS
CTTAAATTCAGATGAAGGAT+GGG 0.532180 8_4:-54589786 Msa1334250:CDS
ATTACACCAATCTTATCGAA+TGG 0.535345 8_4:-54589844 Msa1334250:CDS
GGAAATGATGAAGGCAATTG+AGG 0.537388 8_4:-54589765 Msa1334250:CDS
TGGGTCGAAAAGATTTAAAA+CGG 0.537784 8_4:+54590425 None:intergenic
TTACACCAATCTTATCGAAT+GGG 0.537864 8_4:-54589843 Msa1334250:CDS
ACCTTTACCTGGAGTAGAAG+TGG 0.539130 8_4:+54590372 None:intergenic
AGGGCGACTTTGGACCGGTA+AGG 0.542327 8_4:-54588955 Msa1334250:CDS
GCTTAAATTCAGATGAAGGA+TGG 0.545084 8_4:-54589787 Msa1334250:CDS
ATGGTGTGCAGTGGAATTTG+AGG 0.545985 8_4:+54590461 None:intergenic
TTAGTAAGAGTAGTTGTCTC+CGG 0.546132 8_4:+54589893 None:intergenic
GAAGAGATCGTAGAGGTTGG+AGG 0.546294 8_4:+54589917 None:intergenic
GCCAACAATACATTCCCTCC+TGG 0.546346 8_4:+54589359 None:intergenic
TTGATGCGCTCTTCTTCATG+TGG 0.546362 8_4:+54589068 None:intergenic
CTTTAAGGGAAGCCTAAAAG+TGG 0.546723 8_4:+54585748 None:intergenic
TGGTGTGCAGTGGAATTTGA+GGG 0.550066 8_4:+54590462 None:intergenic
GGAGAAGAGATCGTAGAGGT+TGG 0.556545 8_4:+54589914 None:intergenic
TCCACTTCTACTCCAGGTAA+AGG 0.557566 8_4:-54590373 Msa1334250:CDS
TACTACTAGACTGCGCCGCA+CGG 0.560360 8_4:-54585655 Msa1334250:three_prime_UTR
CCTTAGGACTGATTGGAAGA+AGG 0.562109 8_4:-54586112 Msa1334250:CDS
AAACGGTCCACAATCGAAGA+TGG 0.562971 8_4:+54590442 None:intergenic
TGGATGTTGTATGCTTTCAA+AGG 0.565529 8_4:-54586232 Msa1334250:CDS
GATGAAAAGTAGAATGTGAA+TGG 0.566518 8_4:+54590394 None:intergenic
GTTTGAAGGCTATAATCCTA+CGG 0.566827 8_4:-54589391 Msa1334250:CDS
ACTACTAGACTGCGCCGCAC+GGG 0.567003 8_4:-54585654 Msa1334250:three_prime_UTR
CCAACCCTGACTGTAATGCT+TGG 0.568817 8_4:-54586197 Msa1334250:CDS
TGTTGGTATATCAAATAGTA+GGG 0.568964 8_4:-54589516 Msa1334250:CDS
TGAAGGATGGGAAATGATGA+AGG 0.569473 8_4:-54589774 Msa1334250:CDS
GGCAGCAATGAACAATAGGT+TGG 0.572321 8_4:-54588934 Msa1334250:CDS
TTCAGGAATAACAGGAGGGA+TGG 0.575083 8_4:-54586047 Msa1334250:exon
CTCTCAAAACCCCAAAATGT+AGG 0.578078 8_4:+54590001 None:intergenic
AATGTGAATGGTCTGTGAAT+GGG 0.582701 8_4:+54590406 None:intergenic
CGGAACGAAATCGAAATCTC+CGG 0.584439 8_4:+54590330 None:intergenic
AATAGGTTGGTTGATGCGCT+AGG 0.587278 8_4:-54588921 Msa1334250:CDS
TCTGATAAGGAAGAAATGAC+CGG 0.587654 8_4:+54589293 None:intergenic
CAGATCATTAAGTGTAGATG+AGG 0.588798 8_4:-54588994 Msa1334250:CDS
GGGGTTTCCGTAAGATGAAG+AGG 0.593634 8_4:+54590499 None:intergenic
CATTTCTTCCTTATCAGATG+AGG 0.593943 8_4:-54589288 Msa1334250:CDS
GATCAAGACTCTGTTAGCCT+CGG 0.596334 8_4:-54590278 Msa1334250:CDS
CAATCGAAGATGGTGTGCAG+TGG 0.598273 8_4:+54590452 None:intergenic
TAGACCAAGCATTACAGTCA+GGG 0.599327 8_4:+54586193 None:intergenic
CTTCAATTGCAAATCTTGCG+AGG 0.599666 8_4:-54586151 Msa1334250:CDS
TTAGCTTCAGGGTTAATGGA+TGG 0.600853 8_4:-54589620 Msa1334250:CDS
ATCCTACGGATTGACAGTCC+AGG 0.601328 8_4:-54589377 Msa1334250:CDS
CCTGAATGCACAGCAACCAA+TGG 0.605356 8_4:+54586064 None:intergenic
TTTGATTGAGAATATCCGTA+GGG 0.609950 8_4:-54589429 Msa1334250:CDS
TATATCACCTCCATAATCGA+TGG 0.612527 8_4:+54589463 None:intergenic
GAGGTTGAAGAGATTGCCCA+AGG 0.622061 8_4:-54588975 Msa1334250:CDS
CTCCTGGACTGTCAATCCGT+AGG 0.622715 8_4:+54589375 None:intergenic
CTTTGTAGACAAGGTAGCGA+TGG 0.623654 8_4:-54589018 Msa1334250:CDS
AACTATTTGAGAATGATCAT+CGG 0.625097 8_4:-54589100 Msa1334250:CDS
GAATGGGAACATAAGACAGT+GGG 0.628199 8_4:-54589827 Msa1334250:CDS
AAGAGCTTGATTTAACAGAA+GGG 0.628621 8_4:+54585807 None:intergenic
CCAAGCATTACAGTCAGGGT+TGG 0.629900 8_4:+54586197 None:intergenic
ATTTGATTGAGAATATCCGT+AGG 0.630652 8_4:-54589430 Msa1334250:CDS
TTACAAACACTTTGTAGACA+AGG 0.630675 8_4:-54589027 Msa1334250:CDS
AAAGTGTGAATGGTTTGCGA+TGG 0.637871 8_4:+54590531 None:intergenic
GGTGTGCAGTGGAATTTGAG+GGG 0.647885 8_4:+54590463 None:intergenic
GTGCATTCAGGAATAACAGG+AGG 0.649237 8_4:-54586052 Msa1334250:exon
AGGTTGGTTGATGCGCTAGG+TGG 0.658606 8_4:-54588918 Msa1334250:CDS
TGTGGAGCCATCGATTATGG+AGG 0.660667 8_4:-54589470 Msa1334250:CDS
TACGGATTGACAGTCCAGGA+GGG 0.661634 8_4:-54589373 Msa1334250:CDS
TTATCAGATGAGGCAGCCAG+TGG 0.663360 8_4:-54589278 Msa1334250:CDS
TAAAGACAATACCTGAGAGT+CGG 0.663419 8_4:+54590186 None:intergenic
TGCATTCAGGAATAACAGGA+GGG 0.668569 8_4:-54586051 Msa1334250:exon
CTACGGATTGACAGTCCAGG+AGG 0.672726 8_4:-54589374 Msa1334250:CDS
AGGTTGAAGAGATTGCCCAA+GGG 0.677412 8_4:-54588974 Msa1334250:CDS
CGAATGGGAACATAAGACAG+TGG 0.682407 8_4:-54589828 Msa1334250:CDS
ACCATGTTCGACACGCTCCG+AGG 0.691925 8_4:+54590261 None:intergenic
ACAAATAGAGCAGACACGCG+AGG 0.694628 8_4:+54590124 None:intergenic
TATTTCTTAAAACCAGAGAG+CGG 0.701941 8_4:+54590310 None:intergenic
CTCCGGAGAAGAGATCGTAG+AGG 0.751065 8_4:+54589910 None:intergenic
TGTATGCTTTCAAAGGACTG+TGG 0.762393 8_4:-54586225 Msa1334250:CDS
AGACACGCGAGGATCATATG+CGG 0.776119 8_4:+54590135 None:intergenic
TTTAGCTCATAAGACCCGTG+CGG 0.777545 8_4:+54585640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAAATATATGAATATTT+TGG - chr8_4:54586958-54586977 Msa1334250:intron 10.0%
!!! AGATTATTATTGATATTTTT+AGG - chr8_4:54588345-54588364 Msa1334250:intron 10.0%
!!! ATTTTCATGAAACAAAAAAT+TGG - chr8_4:54586464-54586483 Msa1334250:intron 15.0%
!!! TTTACATATAGTATTTTGAT+TGG - chr8_4:54588045-54588064 Msa1334250:intron 15.0%
!! ATCAATAATAATCTAATGTA+AGG + chr8_4:54588339-54588358 None:intergenic 15.0%
!! AATGTATTTGGTTAATATAT+GGG + chr8_4:54588709-54588728 None:intergenic 15.0%
!! TAATGTATTTGGTTAATATA+TGG + chr8_4:54588710-54588729 None:intergenic 15.0%
!!! TTTGTAAATTTTTAGACTTA+TGG - chr8_4:54589832-54589851 Msa1334250:CDS 15.0%
!! TGATTATTGAAACATTAATT+GGG + chr8_4:54590569-54590588 None:intergenic 15.0%
!! TTGATTATTGAAACATTAAT+TGG + chr8_4:54590570-54590589 None:intergenic 15.0%
!! AATTAATGTTTCAATAATCA+AGG - chr8_4:54590569-54590588 Msa1334250:CDS 15.0%
!!! ATATTTTTCTGTACATGTTA+CGG + chr8_4:54585556-54585575 None:intergenic 20.0%
!! ATATTCAATTTCAAGAAATC+TGG - chr8_4:54586073-54586092 Msa1334250:CDS 20.0%
!! TTCAAGGAAAATATCAAAAA+AGG - chr8_4:54586414-54586433 Msa1334250:intron 20.0%
!!! ATATTTTGGTTTTAAGAAAG+AGG - chr8_4:54586972-54586991 Msa1334250:intron 20.0%
!! GAAAGCTTATAAGAATTATT+TGG + chr8_4:54587492-54587511 None:intergenic 20.0%
!!! TTTTTAAAGTAATTAGCGTA+TGG + chr8_4:54587777-54587796 None:intergenic 20.0%
!! GTTAATTACTTATTTCGTTA+TGG - chr8_4:54587958-54587977 Msa1334250:intron 20.0%
!! TCTCATATTAAAATATCTGT+TGG - chr8_4:54588088-54588107 Msa1334250:intron 20.0%
!! ACGTATAAATAGACTTATAT+GGG + chr8_4:54588271-54588290 None:intergenic 20.0%
!!! TTCTAGAACTAAAATAAACT+AGG - chr8_4:54588303-54588322 Msa1334250:intron 20.0%
!!! TCCATTTTTATTTATTGCTT+GGG - chr8_4:54589151-54589170 Msa1334250:CDS 20.0%
!! ATTGAAACTTAAATTGATCA+TGG + chr8_4:54589645-54589664 None:intergenic 20.0%
!! CAGGAAAAGAAAAAAAAAAA+TGG + chr8_4:54589862-54589881 None:intergenic 20.0%
!! AATTTAAGAGACATAATGTT+TGG + chr8_4:54590440-54590459 None:intergenic 20.0%
!!! CTCTGGTTTTAAGAAATATA+TGG - chr8_4:54585814-54585833 Msa1334250:three_prime_UTR 25.0%
!!! TAGTGTTTTGAGAATCAATT+TGG - chr8_4:54585880-54585899 Msa1334250:three_prime_UTR 25.0%
!!! TATATAGATGCTTTTGATTG+TGG - chr8_4:54586019-54586038 Msa1334250:three_prime_UTR 25.0%
! TATCTGTCTTCTAATTTCAT+CGG + chr8_4:54586056-54586075 None:intergenic 25.0%
!! TACTAAGAGATCTTTGAAAA+AGG - chr8_4:54586252-54586271 Msa1334250:intron 25.0%
! AGGATGATATAAGATCTAAT+TGG - chr8_4:54586374-54586393 Msa1334250:intron 25.0%
! ACAAAAAATTGGATAGATTG+TGG - chr8_4:54586475-54586494 Msa1334250:intron 25.0%
! TGTTGGTATATCAAATAGTA+GGG - chr8_4:54586603-54586622 Msa1334250:intron 25.0%
! TCAAATAGTAGGGAAAATAT+CGG - chr8_4:54586613-54586632 Msa1334250:intron 25.0%
! CTTACTATTATAGGTTCAAT+TGG - chr8_4:54586910-54586929 Msa1334250:intron 25.0%
! AACTATTTGAGAATGATCAT+CGG - chr8_4:54587019-54587038 Msa1334250:intron 25.0%
! TATTCAGCAATCCTAAAAAA+CGG + chr8_4:54587364-54587383 None:intergenic 25.0%
! AAGAATTATTTGGTACTACA+CGG + chr8_4:54587482-54587501 None:intergenic 25.0%
! AAATAGATAGTAGTCAATCT+CGG + chr8_4:54587715-54587734 None:intergenic 25.0%
! AAAAACATAGAACTCAAAAC+AGG + chr8_4:54587989-54588008 None:intergenic 25.0%
! ATTAGGAATTAACTCATTGT+AGG - chr8_4:54588173-54588192 Msa1334250:intron 25.0%
! TGCAATGTCAATAATATTGA+AGG + chr8_4:54588223-54588242 None:intergenic 25.0%
! CACGTATAAATAGACTTATA+TGG + chr8_4:54588272-54588291 None:intergenic 25.0%
! AGATTGTTCTATTAATGACT+AGG + chr8_4:54588382-54588401 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr8_4:54588756-54588775 None:intergenic 25.0%
! CATTGAATACATAATGTGTT+TGG - chr8_4:54588683-54588702 Msa1334250:intron 25.0%
! CACTCAATTCTTAATGTATT+TGG + chr8_4:54588721-54588740 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr8_4:54588756-54588775 Msa1334250:intron 25.0%
! ATAACAAATATTATGGCAAG+AGG + chr8_4:54588804-54588823 None:intergenic 25.0%
!!! CTTGCCATAATATTTGTTAT+TGG - chr8_4:54588804-54588823 Msa1334250:intron 25.0%
! GAGACCAATAACAAATATTA+TGG + chr8_4:54588811-54588830 None:intergenic 25.0%
! TAGTAATTACATTCTTGACA+GGG - chr8_4:54589054-54589073 Msa1334250:CDS 25.0%
!!! CTCCATTTTTATTTATTGCT+TGG - chr8_4:54589150-54589169 Msa1334250:CDS 25.0%
!!! ATAGACTGAATTTTCTAGTT+TGG - chr8_4:54589356-54589375 Msa1334250:CDS 25.0%
! ATTAGGAATTAAGTCATTGT+AGG - chr8_4:54589529-54589548 Msa1334250:CDS 25.0%
!!! TTTACCAGTAATTTTTTGCT+AGG - chr8_4:54589712-54589731 Msa1334250:CDS 25.0%
!!! AATTTTCTGAAATCAAGGAA+TGG + chr8_4:54589767-54589786 None:intergenic 25.0%
!!! GAATCAATTTTCTGAAATCA+AGG + chr8_4:54589772-54589791 None:intergenic 25.0%
!! AATGTTTGATGTATTTCTGT+TGG - chr8_4:54589795-54589814 Msa1334250:CDS 25.0%
! AAAATTTACAAACCAGAAAC+CGG + chr8_4:54589824-54589843 None:intergenic 25.0%
! TATTAGCATGTAGATGATTT+AGG - chr8_4:54590139-54590158 Msa1334250:CDS 25.0%
!! TTTCGTAATGTATTTTGTCT+TGG - chr8_4:54590506-54590525 Msa1334250:CDS 25.0%
GATGAGAAATAAAGTGTGAA+TGG + chr8_4:54585601-54585620 None:intergenic 30.0%
TGGGTCGAAAAGATTTAAAA+CGG + chr8_4:54585697-54585716 None:intergenic 30.0%
GATGAAAAGTAGAATGTGAA+TGG + chr8_4:54585728-54585747 None:intergenic 30.0%
TATTTCTTAAAACCAGAGAG+CGG + chr8_4:54585812-54585831 None:intergenic 30.0%
!!! GTTTTGAGAATCAATTTGGA+AGG - chr8_4:54585884-54585903 Msa1334250:three_prime_UTR 30.0%
! ATAAGATTTTCGCTTAGTTG+AGG + chr8_4:54585959-54585978 None:intergenic 30.0%
!! TTGCTTTTATGCCTACATTT+TGG - chr8_4:54586107-54586126 Msa1334250:CDS 30.0%
! TGCTTTTATGCCTACATTTT+GGG - chr8_4:54586108-54586127 Msa1334250:CDS 30.0%
ATTACACCAATCTTATCGAA+TGG - chr8_4:54586275-54586294 Msa1334250:intron 30.0%
TTACACCAATCTTATCGAAT+GGG - chr8_4:54586276-54586295 Msa1334250:intron 30.0%
CTTAAATTCAGATGAAGGAT+GGG - chr8_4:54586333-54586352 Msa1334250:intron 30.0%
!! AAGATCTAATTGGCTTGATA+TGG - chr8_4:54586384-54586403 Msa1334250:intron 30.0%
TTGATATGGTTTCTTGTTCA+AGG - chr8_4:54586398-54586417 Msa1334250:intron 30.0%
!!! AAGGACCTTCTAACTTTTTT+CGG - chr8_4:54586433-54586452 Msa1334250:intron 30.0%
GATGGTGACAAGATTATTAT+GGG - chr8_4:54586517-54586536 Msa1334250:intron 30.0%
!!! GAATATATTTTGAAGTCGAG+CGG + chr8_4:54586565-54586584 None:intergenic 30.0%
CTGTTGGTATATCAAATAGT+AGG - chr8_4:54586602-54586621 Msa1334250:intron 30.0%
ATCGGTATTATTAGAGTTTG+TGG - chr8_4:54586631-54586650 Msa1334250:intron 30.0%
ATTTGATTGAGAATATCCGT+AGG - chr8_4:54586689-54586708 Msa1334250:intron 30.0%
TTTGATTGAGAATATCCGTA+GGG - chr8_4:54586690-54586709 Msa1334250:intron 30.0%
! TATTGTTGGCTGATCAATTA+TGG - chr8_4:54586773-54586792 Msa1334250:intron 30.0%
GCTGAGAAACTTACTATTAT+AGG - chr8_4:54586901-54586920 Msa1334250:intron 30.0%
AAGAAAGAGGTTCTTTCTAA+AGG - chr8_4:54586985-54587004 Msa1334250:intron 30.0%
TTACAAACACTTTGTAGACA+AGG - chr8_4:54587092-54587111 Msa1334250:intron 30.0%
!! AGGTATATTAGCCTTCAATT+TGG + chr8_4:54587250-54587269 None:intergenic 30.0%
AGGCTAATATACCTCAAAAT+AGG - chr8_4:54587256-54587275 Msa1334250:intron 30.0%
! AGATTAATAGGCCTATTTTG+AGG + chr8_4:54587270-54587289 None:intergenic 30.0%
TCAAAATAGGCCTATTAATC+TGG - chr8_4:54587269-54587288 Msa1334250:intron 30.0%
! ACTACACGGTTAAGAATTTT+GGG + chr8_4:54587468-54587487 None:intergenic 30.0%
! TACTACACGGTTAAGAATTT+TGG + chr8_4:54587469-54587488 None:intergenic 30.0%
TATGTACATGAAGAATCGTT+TGG + chr8_4:54587881-54587900 None:intergenic 30.0%
! TTTTATGCTCAACTTGTACA+TGG - chr8_4:54588007-54588026 Msa1334250:intron 30.0%
GGAAAATATAGTGTTAAGAG+AGG - chr8_4:54588109-54588128 Msa1334250:intron 30.0%
TTATTGACATTGCATCTCAA+AGG - chr8_4:54588229-54588248 Msa1334250:intron 30.0%
AATCTATGTTTGAGCAACTA+CGG + chr8_4:54588542-54588561 None:intergenic 30.0%
ATTGTTGAAGATTTCTGACA+GGG - chr8_4:54588957-54588976 Msa1334250:CDS 30.0%
CTAGTAATTACATTCTTGAC+AGG - chr8_4:54589053-54589072 Msa1334250:CDS 30.0%
GCCCAAGCAATAAATAAAAA+TGG + chr8_4:54589155-54589174 None:intergenic 30.0%
!! TCTATTGCCTTCTTAGTTTT+GGG - chr8_4:54589276-54589295 Msa1334250:CDS 30.0%
GTTTAAACCCAAAACTAAGA+AGG + chr8_4:54589286-54589305 None:intergenic 30.0%
AGTCTATGACTCAAAACAAA+AGG + chr8_4:54589343-54589362 None:intergenic 30.0%
!!! ACTGAATTTTCTAGTTTGGT+AGG - chr8_4:54589360-54589379 Msa1334250:CDS 30.0%
TTCATGCTGTAGAAAATAGT+TGG - chr8_4:54589392-54589411 Msa1334250:CDS 30.0%
GTTGTGGTGTAAGAAAAAAA+AGG - chr8_4:54589500-54589519 Msa1334250:CDS 30.0%
GAAAAAAAAGGACACACATT+AGG - chr8_4:54589512-54589531 Msa1334250:CDS 30.0%
CAATCCTAGCAAAAAATTAC+TGG + chr8_4:54589719-54589738 None:intergenic 30.0%
!!! CAGTAATTTTTTGCTAGGAT+TGG - chr8_4:54589717-54589736 Msa1334250:CDS 30.0%
CAATTGAAGCACAAAACATT+TGG + chr8_4:54589957-54589976 None:intergenic 30.0%
AACCAGCATATAAAACCAAA+TGG + chr8_4:54590165-54590184 None:intergenic 30.0%
!!! TATATGCTGGTTTTTTAGTG+TGG - chr8_4:54590173-54590192 Msa1334250:CDS 30.0%
!!! ATATGCTGGTTTTTTAGTGT+GGG - chr8_4:54590174-54590193 Msa1334250:CDS 30.0%
!!! GTTTGACTCTGCTTTTTAAA+TGG - chr8_4:54590221-54590240 Msa1334250:CDS 30.0%
AAGAGCTTGATTTAACAGAA+GGG + chr8_4:54590315-54590334 None:intergenic 30.0%
!! GTTGACATTTTACCACTTTT+AGG - chr8_4:54590359-54590378 Msa1334250:CDS 30.0%
AAGCTCTTGACACAATTAAA+TGG - chr8_4:54590396-54590415 Msa1334250:CDS 30.0%
! TTTTTCTGTACATGTTACGG+AGG + chr8_4:54585553-54585572 None:intergenic 35.0%
TTCTCATCCTCTTCATCTTA+CGG - chr8_4:54585613-54585632 Msa1334250:three_prime_UTR 35.0%
AATGTGAATGGTCTGTGAAT+GGG + chr8_4:54585716-54585735 None:intergenic 35.0%
!! AACAGTGTTGATTATTCGAC+CGG - chr8_4:54585770-54585789 Msa1334250:three_prime_UTR 35.0%
! TTGGAAGGAAAGTTTTCAGA+TGG - chr8_4:54585899-54585918 Msa1334250:three_prime_UTR 35.0%
TAAAGACAATACCTGAGAGT+CGG + chr8_4:54585936-54585955 None:intergenic 35.0%
!! TAGATGCTTTTGATTGTGGT+TGG - chr8_4:54586023-54586042 Msa1334250:three_prime_UTR 35.0%
!! AGATGCTTTTGATTGTGGTT+GGG - chr8_4:54586024-54586043 Msa1334250:three_prime_UTR 35.0%
! GCTTTTATGCCTACATTTTG+GGG - chr8_4:54586109-54586128 Msa1334250:CDS 35.0%
TTAGTAAGAGTAGTTGTCTC+CGG + chr8_4:54586229-54586248 None:intergenic 35.0%
ATGTTCCCATTCGATAAGAT+TGG + chr8_4:54586284-54586303 None:intergenic 35.0%
GTGGGCAAATATAAAATTGC+AGG - chr8_4:54586310-54586329 Msa1334250:intron 35.0%
GCTTAAATTCAGATGAAGGA+TGG - chr8_4:54586332-54586351 Msa1334250:intron 35.0%
CACTACCGAAAAAAGTTAGA+AGG + chr8_4:54586441-54586460 None:intergenic 35.0%
!!! TCTAACTTTTTTCGGTAGTG+AGG - chr8_4:54586441-54586460 Msa1334250:intron 35.0%
!! ATAGATTGTGGATTAGCTTC+AGG - chr8_4:54586487-54586506 Msa1334250:intron 35.0%
!! TAGATTGTGGATTAGCTTCA+GGG - chr8_4:54586488-54586507 Msa1334250:intron 35.0%
GGATGGTGACAAGATTATTA+TGG - chr8_4:54586516-54586535 Msa1334250:intron 35.0%
! CAAGTTAAAAAGTGCACTGT+TGG - chr8_4:54586586-54586605 Msa1334250:intron 35.0%
TATATCACCTCCATAATCGA+TGG + chr8_4:54586659-54586678 None:intergenic 35.0%
CGATTATGGAGGTGATATAA+TGG - chr8_4:54586660-54586679 Msa1334250:intron 35.0%
TGGGTCATCAAAAAGTTTGA+AGG - chr8_4:54586714-54586733 Msa1334250:intron 35.0%
GTTTGAAGGCTATAATCCTA+CGG - chr8_4:54586728-54586747 Msa1334250:intron 35.0%
! CATTCTTGCATCTAAGATAC+CGG - chr8_4:54586807-54586826 Msa1334250:intron 35.0%
TCTGATAAGGAAGAAATGAC+CGG + chr8_4:54586829-54586848 None:intergenic 35.0%
CATTTCTTCCTTATCAGATG+AGG - chr8_4:54586831-54586850 Msa1334250:intron 35.0%
CTCATCTACACTTAATGATC+TGG + chr8_4:54587127-54587146 None:intergenic 35.0%
CAGATCATTAAGTGTAGATG+AGG - chr8_4:54587125-54587144 Msa1334250:intron 35.0%
TGTTGCTATAGCCAAATTGA+AGG - chr8_4:54587236-54587255 Msa1334250:intron 35.0%
GAGAGTTCAACCAGATTAAT+AGG + chr8_4:54587282-54587301 None:intergenic 35.0%
TGAACTCTCTGTGTAATTTG+AGG - chr8_4:54587293-54587312 Msa1334250:intron 35.0%
! TGTAATTTGAGGTTGTAACG+AGG - chr8_4:54587304-54587323 Msa1334250:intron 35.0%
!!! TGTCATACTGACCGTTTTTT+AGG - chr8_4:54587350-54587369 Msa1334250:intron 35.0%
AAAGACTCGTGTTGAATTGT+GGG + chr8_4:54587389-54587408 None:intergenic 35.0%
AAAAGACTCGTGTTGAATTG+TGG + chr8_4:54587390-54587409 None:intergenic 35.0%
! AAAGTTTCTCAGAAAGCATG+CGG + chr8_4:54587432-54587451 None:intergenic 35.0%
! TGCTTTCTGAGAAACTTTCT+AGG - chr8_4:54587434-54587453 Msa1334250:intron 35.0%
!!! ACGGTTAAGAATTTTGGGAT+GGG + chr8_4:54587463-54587482 None:intergenic 35.0%
TTAGACGAACCGAATCATAT+CGG + chr8_4:54587564-54587583 None:intergenic 35.0%
CGAAATATATCAGCTACATG+CGG + chr8_4:54587744-54587763 None:intergenic 35.0%
! AGTGATAGTGCAGTGTTATT+TGG - chr8_4:54587821-54587840 Msa1334250:intron 35.0%
! TTTTTGTATGACACACGTTC+AGG - chr8_4:54587915-54587934 Msa1334250:intron 35.0%
TATAGTGTTAAGAGAGGTTG+TGG - chr8_4:54588115-54588134 Msa1334250:intron 35.0%
AGGAATTAACTCATTGTAGG+AGG - chr8_4:54588176-54588195 Msa1334250:intron 35.0%
AGTTTCCGAAATATGCATCA+AGG + chr8_4:54588508-54588527 None:intergenic 35.0%
ATGAAGAATATCAATGCAGG+AGG + chr8_4:54588578-54588597 None:intergenic 35.0%
! TCCTGCATTGATATTCTTCA+TGG - chr8_4:54588577-54588596 Msa1334250:intron 35.0%
ACCATGAAGAATATCAATGC+AGG + chr8_4:54588581-54588600 None:intergenic 35.0%
TCATGGTTGATCAATTTGAC+AGG - chr8_4:54588594-54588613 Msa1334250:intron 35.0%
CATTATTATGATACTCCCTC+CGG - chr8_4:54588626-54588645 Msa1334250:intron 35.0%
GAAAACTACTAGAGCAACTA+AGG + chr8_4:54588875-54588894 None:intergenic 35.0%
! TTCCTTGTTCGTCTTGTTAA+AGG - chr8_4:54588892-54588911 Msa1334250:CDS 35.0%
AATCTTCAACAATGTCGACA+AGG + chr8_4:54588950-54588969 None:intergenic 35.0%
CATTGTTGAAGATTTCTGAC+AGG - chr8_4:54588956-54588975 Msa1334250:CDS 35.0%
TCAAGAATACATGAGTGACA+AGG + chr8_4:54589015-54589034 None:intergenic 35.0%
CTTGAGTCTTTAATTGCCAT+AGG - chr8_4:54589191-54589210 Msa1334250:CDS 35.0%
AGTTGGACTTGAACTTTAAG+AGG - chr8_4:54589225-54589244 Msa1334250:CDS 35.0%
! ACTTGAACTTTAAGAGGATC+AGG - chr8_4:54589231-54589250 Msa1334250:CDS 35.0%
AGAAGGCAATAGAGGAATTT+AGG + chr8_4:54589269-54589288 None:intergenic 35.0%
CAAAACTAAGAAGGCAATAG+AGG + chr8_4:54589277-54589296 None:intergenic 35.0%
! CTCTATTGCCTTCTTAGTTT+TGG - chr8_4:54589275-54589294 Msa1334250:CDS 35.0%
GATACCACTGTTGGAAAATA+TGG - chr8_4:54589466-54589485 Msa1334250:CDS 35.0%
! AACACCATATTTTCCAACAG+TGG + chr8_4:54589473-54589492 None:intergenic 35.0%
! GGAAAATATGGTGTTAAGAG+AGG - chr8_4:54589478-54589497 Msa1334250:CDS 35.0%
AGGAATTAAGTCATTGTAGG+AGG - chr8_4:54589532-54589551 Msa1334250:CDS 35.0%
GGAATGGCATTAGTAGTTTA+CGG + chr8_4:54589751-54589770 None:intergenic 35.0%
!!! TTTTTTCTTTTCCTGCAGTC+TGG - chr8_4:54589867-54589886 Msa1334250:CDS 35.0%
TGGATGTTGTATGCTTTCAA+AGG - chr8_4:54589887-54589906 Msa1334250:CDS 35.0%
TGTAGATGATTTAGGCCATT+TGG - chr8_4:54590147-54590166 Msa1334250:CDS 35.0%
TTAGACATGTTTGACCAAAC+TGG - chr8_4:54590286-54590305 Msa1334250:CDS 35.0%
CAAGAGCTTGATTTAACAGA+AGG + chr8_4:54590316-54590335 None:intergenic 35.0%
CTTCTGTTAAATCAAGCTCT+TGG - chr8_4:54590314-54590333 Msa1334250:CDS 35.0%
TGTCAAGAGCTTTGCTTTAA+GGG + chr8_4:54590388-54590407 None:intergenic 35.0%
! CGTAATGTATTTTGTCTTGG+TGG - chr8_4:54590509-54590528 Msa1334250:CDS 35.0%
! AAAGTGTGAATGGTTTGCGA+TGG + chr8_4:54585591-54585610 None:intergenic 40.0%
TGAGGGGTTTGTGAATTTGA+GGG + chr8_4:54585643-54585662 None:intergenic 40.0%
TTGAGGGGTTTGTGAATTTG+AGG + chr8_4:54585644-54585663 None:intergenic 40.0%
GAATGTGAATGGTCTGTGAA+TGG + chr8_4:54585717-54585736 None:intergenic 40.0%
! TTTTCATCCACTTCTACTCC+AGG - chr8_4:54585740-54585759 Msa1334250:three_prime_UTR 40.0%
TCAACACTGTTACCTTTACC+TGG + chr8_4:54585761-54585780 None:intergenic 40.0%
! AAGTTTTCAGATGGACCAGT+TGG - chr8_4:54585908-54585927 Msa1334250:three_prime_UTR 40.0%
!! GATGCTTTTGATTGTGGTTG+GGG - chr8_4:54586025-54586044 Msa1334250:three_prime_UTR 40.0%
CTCTCAAAACCCCAAAATGT+AGG + chr8_4:54586121-54586140 None:intergenic 40.0%
!!! ACATTTTGGGGTTTTGAGAG+TGG - chr8_4:54586121-54586140 Msa1334250:CDS 40.0%
GAATGGGAACATAAGACAGT+GGG - chr8_4:54586292-54586311 Msa1334250:intron 40.0%
GCAGGCTTAAATTCAGATGA+AGG - chr8_4:54586328-54586347 Msa1334250:intron 40.0%
TGAAGGATGGGAAATGATGA+AGG - chr8_4:54586345-54586364 Msa1334250:intron 40.0%
GGAAATGATGAAGGCAATTG+AGG - chr8_4:54586354-54586373 Msa1334250:intron 40.0%
!! TGGATTAGCTTCAGGGTTAA+TGG - chr8_4:54586495-54586514 Msa1334250:intron 40.0%
TTAGCTTCAGGGTTAATGGA+TGG - chr8_4:54586499-54586518 Msa1334250:intron 40.0%
ATGGGTCTCAGTAAGAGATT+TGG - chr8_4:54586535-54586554 Msa1334250:intron 40.0%
!!! TATATTTTGAAGTCGAGCGG+TGG + chr8_4:54586562-54586581 None:intergenic 40.0%
ATTGAGAATATCCGTAGGGT+TGG - chr8_4:54586694-54586713 Msa1334250:intron 40.0%
TTGAGAATATCCGTAGGGTT+GGG - chr8_4:54586695-54586714 Msa1334250:intron 40.0%
!! TTTTTGATGACCCAACCCTA+CGG + chr8_4:54586708-54586727 None:intergenic 40.0%
TGCAATCAAATATGCACCAC+TGG + chr8_4:54586860-54586879 None:intergenic 40.0%
GGTGCATATTTGATTGCAAC+TGG - chr8_4:54586862-54586881 Msa1334250:intron 40.0%
TATTTGATTGCAACTGGAGC+AGG - chr8_4:54586868-54586887 Msa1334250:intron 40.0%
ATTGTTCATTGCTGCCTTAC+CGG + chr8_4:54587181-54587200 None:intergenic 40.0%
GTAAGGCAGCAATGAACAAT+AGG - chr8_4:54587181-54587200 Msa1334250:intron 40.0%
AAGACTCGTGTTGAATTGTG+GGG + chr8_4:54587388-54587407 None:intergenic 40.0%
! AAGTTTCTCAGAAAGCATGC+GGG + chr8_4:54587431-54587450 None:intergenic 40.0%
!! CACGGTTAAGAATTTTGGGA+TGG + chr8_4:54587464-54587483 None:intergenic 40.0%
CGTGTAAGTATGAGACTACA+TGG + chr8_4:54587521-54587540 None:intergenic 40.0%
GAATCATATCGGAATGACAG+GGG + chr8_4:54587553-54587572 None:intergenic 40.0%
CGAATCATATCGGAATGACA+GGG + chr8_4:54587554-54587573 None:intergenic 40.0%
CCTGTCATTCCGATATGATT+CGG - chr8_4:54587552-54587571 Msa1334250:intron 40.0%
CGGGATAGTGTAACAACTAA+AGG + chr8_4:54587662-54587681 None:intergenic 40.0%
!! TGTTACACTATCCCGCTTTT+AGG - chr8_4:54587667-54587686 Msa1334250:intron 40.0%
TAGTAGTCAATCTCGGATAG+CGG + chr8_4:54587708-54587727 None:intergenic 40.0%
! GGTTAGTAGCATTGGACAAA+AGG - chr8_4:54588144-54588163 Msa1334250:intron 40.0%
TGGACAAAAGGACACACATT+AGG - chr8_4:54588156-54588175 Msa1334250:intron 40.0%
GTCCTCCTTGATGCATATTT+CGG - chr8_4:54588500-54588519 Msa1334250:intron 40.0%
TTCCGAAATATGCATCAAGG+AGG + chr8_4:54588505-54588524 None:intergenic 40.0%
!! CGGAGGGAGTATCATAATAA+TGG + chr8_4:54588628-54588647 None:intergenic 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr8_4:54588760-54588779 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr8_4:54588759-54588778 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr8_4:54588759-54588778 Msa1334250:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr8_4:54588760-54588779 Msa1334250:intron 40.0%
CACAAATTTACTACTCCCTC+CGG + chr8_4:54588778-54588797 None:intergenic 40.0%
!! TTTGTTATTGGTCTCCTTGC+CGG - chr8_4:54588816-54588835 Msa1334250:intron 40.0%
TCAGAAGTCTTCAACAAGAC+CGG + chr8_4:54588838-54588857 None:intergenic 40.0%
CTTGTTGAAGACTTCTGACA+TGG - chr8_4:54588840-54588859 Msa1334250:intron 40.0%
GTCCTTTAACAAGACGAACA+AGG + chr8_4:54588897-54588916 None:intergenic 40.0%
ATGCAACTAAGCTGCAAAAG+TGG + chr8_4:54588919-54588938 None:intergenic 40.0%
TCAAATAGAGTAGAGCCTTG+TGG - chr8_4:54589306-54589325 Msa1334250:CDS 40.0%
!! AGAAAATAGTTGGTGAGACG+AGG - chr8_4:54589402-54589421 Msa1334250:CDS 40.0%
! AGGTTATATTTTGCTACGCC+TGG - chr8_4:54589422-54589441 Msa1334250:CDS 40.0%
! TATGGTGTTAAGAGAGGTTG+TGG - chr8_4:54589484-54589503 Msa1334250:CDS 40.0%
!! GATGTATTTCTGTTGGCTTC+CGG - chr8_4:54589802-54589821 Msa1334250:CDS 40.0%
TGTATGCTTTCAAAGGACTG+TGG - chr8_4:54589894-54589913 Msa1334250:CDS 40.0%
TAGACCAAGCATTACAGTCA+GGG + chr8_4:54589929-54589948 None:intergenic 40.0%
TTAGACCAAGCATTACAGTC+AGG + chr8_4:54589930-54589949 None:intergenic 40.0%
CTTCAATTGCAAATCTTGCG+AGG - chr8_4:54589968-54589987 Msa1334250:CDS 40.0%
TGAAAAGCCTTAGGACTGAT+TGG - chr8_4:54590000-54590019 Msa1334250:CDS 40.0%
TGCATTCAGGAATAACAGGA+GGG - chr8_4:54590068-54590087 Msa1334250:CDS 40.0%
!!! GGCCATTTGGTTTTATATGC+TGG - chr8_4:54590160-54590179 Msa1334250:CDS 40.0%
TAACAGAAGGGAAACCAGTT+TGG + chr8_4:54590303-54590322 None:intergenic 40.0%
! CTTTAAGGGAAGCCTAAAAG+TGG + chr8_4:54590374-54590393 None:intergenic 40.0%
GTGTCAAGAGCTTTGCTTTA+AGG + chr8_4:54590389-54590408 None:intergenic 40.0%
GAGGGGTTTGTGAATTTGAG+GGG + chr8_4:54585642-54585661 None:intergenic 45.0%
TGGTGTGCAGTGGAATTTGA+GGG + chr8_4:54585660-54585679 None:intergenic 45.0%
ATGGTGTGCAGTGGAATTTG+AGG + chr8_4:54585661-54585680 None:intergenic 45.0%
AAACGGTCCACAATCGAAGA+TGG + chr8_4:54585680-54585699 None:intergenic 45.0%
TCCACTTCTACTCCAGGTAA+AGG - chr8_4:54585746-54585765 Msa1334250:three_prime_UTR 45.0%
ACCTTTACCTGGAGTAGAAG+TGG + chr8_4:54585750-54585769 None:intergenic 45.0%
CGGAACGAAATCGAAATCTC+CGG + chr8_4:54585792-54585811 None:intergenic 45.0%
! GATCAAGACTCTGTTAGCCT+CGG - chr8_4:54585841-54585860 Msa1334250:three_prime_UTR 45.0%
AACCTCTACGATCTCTTCTC+CGG - chr8_4:54586207-54586226 Msa1334250:CDS 45.0%
CGAATGGGAACATAAGACAG+TGG - chr8_4:54586291-54586310 Msa1334250:intron 45.0%
! GTTTGTGGAGCCATCGATTA+TGG - chr8_4:54586646-54586665 Msa1334250:intron 45.0%
TCCAGGAGGGAATGTATTGT+TGG - chr8_4:54586759-54586778 Msa1334250:intron 45.0%
TTGATGCGCTCTTCTTCATG+TGG + chr8_4:54587054-54587073 None:intergenic 45.0%
CTTTGTAGACAAGGTAGCGA+TGG - chr8_4:54587101-54587120 Msa1334250:intron 45.0%
AGGTTGAAGAGATTGCCCAA+GGG - chr8_4:54587145-54587164 Msa1334250:intron 45.0%
GGCAGCAATGAACAATAGGT+TGG - chr8_4:54587185-54587204 Msa1334250:intron 45.0%
!! AATAGGTTGGTTGATGCGCT+AGG - chr8_4:54587198-54587217 Msa1334250:intron 45.0%
TCTCATACTTACACGACCTC+AGG - chr8_4:54587526-54587545 Msa1334250:intron 45.0%
CCGAATCATATCGGAATGAC+AGG + chr8_4:54587555-54587574 None:intergenic 45.0%
! TCGGTTCGTCTAAAAGCTGT+TGG - chr8_4:54587571-54587590 Msa1334250:intron 45.0%
CGGTTCGTCTAAAAGCTGTT+GGG - chr8_4:54587572-54587591 Msa1334250:intron 45.0%
GACTTGTGCATGACAATGAG+CGG + chr8_4:54587600-54587619 None:intergenic 45.0%
ACTAAAGGCTGACAAGTACG+AGG + chr8_4:54587647-54587666 None:intergenic 45.0%
!!! CACTATCCCGCTTTTAGGTT+TGG - chr8_4:54587672-54587691 Msa1334250:intron 45.0%
AGTGTTAAGAGAGGTTGTGG+TGG - chr8_4:54588118-54588137 Msa1334250:intron 45.0%
! GAGCAACTACGGACTACATT+TGG + chr8_4:54588531-54588550 None:intergenic 45.0%
ACTCGCAAGCAACTATGAAG+CGG + chr8_4:54588990-54589009 None:intergenic 45.0%
!! GTACTCAAGTTGAGCATCAG+AGG - chr8_4:54589119-54589138 Msa1334250:CDS 45.0%
CAACTGATGTCGCAAACCTA+TGG + chr8_4:54589210-54589229 None:intergenic 45.0%
CATAGGTTTGCGACATCAGT+TGG - chr8_4:54589208-54589227 Msa1334250:CDS 45.0%
! AAGGAGTACATGTAGCCACA+AGG + chr8_4:54589324-54589343 None:intergenic 45.0%
ACTTCATTCCCCTGTGCTTA+AGG - chr8_4:54589672-54589691 Msa1334250:CDS 45.0%
AACCTCTACCTTAAGCACAG+GGG + chr8_4:54589683-54589702 None:intergenic 45.0%
GAACCTCTACCTTAAGCACA+GGG + chr8_4:54589684-54589703 None:intergenic 45.0%
AGAACCTCTACCTTAAGCAC+AGG + chr8_4:54589685-54589704 None:intergenic 45.0%
AATTGCAAATCTTGCGAGGC+TGG - chr8_4:54589972-54589991 Msa1334250:CDS 45.0%
CTGGCTTACTGAAAAGCCTT+AGG - chr8_4:54589991-54590010 Msa1334250:CDS 45.0%
CCTTCTTCCAATCAGTCCTA+AGG + chr8_4:54590010-54590029 None:intergenic 45.0%
CCTTAGGACTGATTGGAAGA+AGG - chr8_4:54590007-54590026 Msa1334250:CDS 45.0%
GCTGTGCATTCAGGAATAAC+AGG - chr8_4:54590064-54590083 Msa1334250:CDS 45.0%
GTGCATTCAGGAATAACAGG+AGG - chr8_4:54590067-54590086 Msa1334250:CDS 45.0%
TTCAGGAATAACAGGAGGGA+TGG - chr8_4:54590072-54590091 Msa1334250:CDS 45.0%
GAGTCAAACTGCACTCAAAC+AGG + chr8_4:54590210-54590229 None:intergenic 45.0%
! TTTAGCTCATAAGACCCGTG+CGG + chr8_4:54590482-54590501 None:intergenic 45.0%
! GTGTGAATGGTTTGCGATGG+AGG + chr8_4:54585588-54585607 None:intergenic 50.0%
GGGGTTTCCGTAAGATGAAG+AGG + chr8_4:54585623-54585642 None:intergenic 50.0%
GGTGTGCAGTGGAATTTGAG+GGG + chr8_4:54585659-54585678 None:intergenic 50.0%
CAATCGAAGATGGTGTGCAG+TGG + chr8_4:54585670-54585689 None:intergenic 50.0%
CTGCACACCATCTTCGATTG+TGG - chr8_4:54585670-54585689 Msa1334250:three_prime_UTR 50.0%
TTCGATTTCGTTCCGCTCTC+TGG - chr8_4:54585797-54585816 Msa1334250:three_prime_UTR 50.0%
AGACACGCGAGGATCATATG+CGG + chr8_4:54585987-54586006 None:intergenic 50.0%
ACAAATAGAGCAGACACGCG+AGG + chr8_4:54585998-54586017 None:intergenic 50.0%
!!! GGGGTTTTGAGAGTGGAGTT+TGG - chr8_4:54586128-54586147 Msa1334250:CDS 50.0%
GAAGAGATCGTAGAGGTTGG+AGG + chr8_4:54586205-54586224 None:intergenic 50.0%
GGAGAAGAGATCGTAGAGGT+TGG + chr8_4:54586208-54586227 None:intergenic 50.0%
! TGTGGAGCCATCGATTATGG+AGG - chr8_4:54586649-54586668 Msa1334250:intron 50.0%
! ATCCTACGGATTGACAGTCC+AGG - chr8_4:54586742-54586761 Msa1334250:intron 50.0%
! TACGGATTGACAGTCCAGGA+GGG - chr8_4:54586746-54586765 Msa1334250:intron 50.0%
GCCAACAATACATTCCCTCC+TGG + chr8_4:54586763-54586782 None:intergenic 50.0%
ACTGGCTGCCTCATCTGATA+AGG + chr8_4:54586842-54586861 None:intergenic 50.0%
TTATCAGATGAGGCAGCCAG+TGG - chr8_4:54586841-54586860 Msa1334250:intron 50.0%
GAGGTTGAAGAGATTGCCCA+AGG - chr8_4:54587144-54587163 Msa1334250:intron 50.0%
TAGCGGCCAAACCTAAAAGC+GGG + chr8_4:54587681-54587700 None:intergenic 50.0%
GTAGCGGCCAAACCTAAAAG+CGG + chr8_4:54587682-54587701 None:intergenic 50.0%
! TAAGAGAGGTTGTGGTGGAG+TGG - chr8_4:54588123-54588142 Msa1334250:intron 50.0%
GGTGGAGTGGTTAGTAGCAT+TGG - chr8_4:54588136-54588155 Msa1334250:intron 50.0%
AGTCTTCAACAAGACCGGCA+AGG + chr8_4:54588833-54588852 None:intergenic 50.0%
CTCGCAAGCAACTATGAAGC+GGG + chr8_4:54588989-54589008 None:intergenic 50.0%
AGTTGAGCATCAGAGGTTGC+AGG - chr8_4:54589126-54589145 Msa1334250:CDS 50.0%
GCTGCGTTCGATCATTAACC+AGG + chr8_4:54589443-54589462 None:intergenic 50.0%
! CGCAGCTTTGATACCACTGT+TGG - chr8_4:54589457-54589476 Msa1334250:CDS 50.0%
TTCCCCTGTGCTTAAGGTAG+AGG - chr8_4:54589678-54589697 Msa1334250:CDS 50.0%
!! TTCTGTTGGCTTCCGGTTTC+TGG - chr8_4:54589809-54589828 Msa1334250:CDS 50.0%
GCATACAACATCCAGACTGC+AGG + chr8_4:54589881-54589900 None:intergenic 50.0%
CCAAGCATTACAGTCAGGGT+TGG + chr8_4:54589925-54589944 None:intergenic 50.0%
CCAACCCTGACTGTAATGCT+TGG - chr8_4:54589922-54589941 Msa1334250:CDS 50.0%
CCTGAATGCACAGCAACCAA+TGG + chr8_4:54590058-54590077 None:intergenic 50.0%
! CCATTGGTTGCTGTGCATTC+AGG - chr8_4:54590055-54590074 Msa1334250:CDS 50.0%
GGAATAACAGGAGGGATGGT+TGG - chr8_4:54590076-54590095 Msa1334250:CDS 50.0%
CTCCGGAGAAGAGATCGTAG+AGG + chr8_4:54586212-54586231 None:intergenic 55.0%
CTCCTGGACTGTCAATCCGT+AGG + chr8_4:54586747-54586766 None:intergenic 55.0%
! CTACGGATTGACAGTCCAGG+AGG - chr8_4:54586745-54586764 Msa1334250:intron 55.0%
AGATTGCCCAAGGGCGACTT+TGG - chr8_4:54587154-54587173 Msa1334250:intron 55.0%
! AGGTTGGTTGATGCGCTAGG+TGG - chr8_4:54587201-54587220 Msa1334250:intron 55.0%
! TCTCAGAAAGCATGCGGGTG+AGG + chr8_4:54587426-54587445 None:intergenic 55.0%
CAAGTACGAGGAGTGGTCGT+CGG + chr8_4:54587635-54587654 None:intergenic 55.0%
AGGCTGACAAGTACGAGGAG+TGG + chr8_4:54587642-54587661 None:intergenic 55.0%
TACTACTAGACTGCGCCGCA+CGG - chr8_4:54590464-54590483 Msa1334250:CDS 55.0%
ACCATGTTCGACACGCTCCG+AGG + chr8_4:54585861-54585880 None:intergenic 60.0%
!! ACCAGTTGGCACCGACTCTC+AGG - chr8_4:54585922-54585941 Msa1334250:three_prime_UTR 60.0%
!! ACCTGAGAGTCGGTGCCAAC+TGG + chr8_4:54585926-54585945 None:intergenic 60.0%
ACCGGTCCAAAGTCGCCCTT+GGG + chr8_4:54587163-54587182 None:intergenic 60.0%
TACCGGTCCAAAGTCGCCCT+TGG + chr8_4:54587164-54587183 None:intergenic 60.0%
AGGGCGACTTTGGACCGGTA+AGG - chr8_4:54587164-54587183 Msa1334250:intron 60.0%
TCGGAATGACAGGGGTCCTG+AGG + chr8_4:54587545-54587564 None:intergenic 60.0%
! TCTCGGATAGCGGTGCGTAG+CGG + chr8_4:54587698-54587717 None:intergenic 60.0%
ACTACTAGACTGCGCCGCAC+GGG - chr8_4:54590465-54590484 Msa1334250:CDS 60.0%
GCCTCGGAGCGTGTCGAACA+TGG - chr8_4:54585857-54585876 Msa1334250:three_prime_UTR 65.0%
GCCCAAGGGCGACTTTGGAC+CGG - chr8_4:54587159-54587178 Msa1334250:intron 65.0%
GGAGTGGTCGTCGGTGCACA+AGG + chr8_4:54587626-54587645 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54585542 54590599 54585542 ID=Msa1334250;Name=Msa1334250
chr8_4 mRNA 54585542 54590599 54585542 ID=Msa1334250-mRNA-1;Parent=Msa1334250;Name=Msa1334250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0.5|1|1|1|2|517|648
chr8_4 exon 54585542 54586256 54585542 ID=Msa1334250-mRNA-1:exon:17001;Parent=Msa1334250-mRNA-1
chr8_4 exon 54588851 54590599 54588851 ID=Msa1334250-mRNA-1:exon:17000;Parent=Msa1334250-mRNA-1
chr8_4 CDS 54588851 54590599 54588851 ID=Msa1334250-mRNA-1:cds;Parent=Msa1334250-mRNA-1
chr8_4 CDS 54586059 54586256 54586059 ID=Msa1334250-mRNA-1:cds;Parent=Msa1334250-mRNA-1
chr8_4 three_prime_UTR 54585542 54586058 54585542 ID=Msa1334250-mRNA-1:three_prime_utr;Parent=Msa1334250-mRNA-1
Gene Sequence

>Msa1334250

ATGACAATCCTCCGTAACATGTACAGAAAAATATCACGATCATCCTCCATCGCAAACCATTCACACTTTATTTCTCATCCTCTTCATCTTACGGAAACCCCTCAAATTCACAAACCCCTCAAATTCCACTGCACACCATCTTCGATTGTGGACCGTTTTAAATCTTTTCGACCCATTCACAGACCATTCACATTCTACTTTTCATCCACTTCTACTCCAGGTAAAGGTAACAGTGTTGATTATTCGACCGGAGATTTCGATTTCGTTCCGCTCTCTGGTTTTAAGAAATATATGGTGAAGATCAAGACTCTGTTAGCCTCGGAGCGTGTCGAACATGGTAGTGTTTTGAGAATCAATTTGGAAGGAAAGTTTTCAGATGGACCAGTTGGCACCGACTCTCAGGTATTGTCTTTACCTCAACTAAGCGAAAATCTTATGAAAGCCGCATATGATCCTCGCGTGTCTGCTCTATTTGTTTATATAGATGCTTTTGATTGTGGTTGGGGCAAAGCCGATGAAATTAGAAGACAGATATTCAATTTCAAGAAATCTGGTAAAAAAGTTATTGCTTTTATGCCTACATTTTGGGGTTTTGAGAGTGGAGTTTGGTATCAAAATAAATCATATTACATAGCTAGTGAATGTCATGAAATCTATGCACCTCCAACCTCTACGATCTCTTCTCCGGAGACAACTACTCTTACTAAGATTACTAAGAGATCTTTGAAAAAGGATTACACCAATCTTATCGAATGGGAACATAAGACAGTGGGCAAATATAAAATTGCAGGCTTAAATTCAGATGAAGGATGGGAAATGATGAAGGCAATTGAGGATGATATAAGATCTAATTGGCTTGATATGGTTTCTTGTTCAAGGAAAATATCAAAAAAGGACCTTCTAACTTTTTTCGGTAGTGAGGATTTTCATGAAACAAAAAATTGGATAGATTGTGGATTAGCTTCAGGGTTAATGGATGGTGACAAGATTATTATGGGTCTCAGTAAGAGATTTGGACCACCGCTCGACTTCAAAATATATTCACAAGTTAAAAAGTGCACTGTTGGTATATCAAATAGTAGGGAAAATATCGGTATTATTAGAGTTTGTGGAGCCATCGATTATGGAGGTGATATAATGGTTCATGATTTGATTGAGAATATCCGTAGGGTTGGGTCATCAAAAAGTTTGAAGGCTATAATCCTACGGATTGACAGTCCAGGAGGGAATGTATTGTTGGCTGATCAATTATGGAGAGAAATCAACATTCTTGCATCTAAGATACCGGTCATTTCTTCCTTATCAGATGAGGCAGCCAGTGGTGCATATTTGATTGCAACTGGAGCAGGAACAATTGTAGCTGAGAAACTTACTATTATAGGTTCAATTGGAGTGAGACTGTCACGTGCAAACATTAAGAAAATATATGAATATTTTGGTTTTAAGAAAGAGGTTCTTTCTAAAGGTAAATATGCAGAACTATTTGAGAATGATCATCGGCTACTTATGCCACATGAAGAAGAGCGCATCAAAAATGAGTTACAAGAAATTTACAAACACTTTGTAGACAAGGTAGCGATGGCCAGATCATTAAGTGTAGATGAGGTTGAAGAGATTGCCCAAGGGCGACTTTGGACCGGTAAGGCAGCAATGAACAATAGGTTGGTTGATGCGCTAGGTGGATTATCACGTGCTGTTGCTATAGCCAAATTGAAGGCTAATATACCTCAAAATAGGCCTATTAATCTGTCTGGATGTTGTATGCTTTCAAAGGACTGTGGTCATACCAACCCTGACTGTAATGCTTGGTCTAATGATCCAAATGTTTTGTGCTTCAATTGCAAATCTTGCGAGGCTGGCTTACTGAAAAGCCTTAGGACTGATTGGAAGAAGGTAGCTGTTGTCAACATTAGTGTACTCCATTGGTTGCTGTGCATTCAGGAATAA
Protein sequence

>Msa1334250

MTILRNMYRKISRSSSIANHSHFISHPLHLTETPQIHKPLKFHCTPSSIVDRFKSFRPIHRPFTFYFSSTSTPGKGNSVDYSTGDFDFVPLSGFKKYMVKIKTLLASERVEHGSVLRINLEGKFSDGPVGTDSQVLSLPQLSENLMKAAYDPRVSALFVYIDAFDCGWGKADEIRRQIFNFKKSGKKVIAFMPTFWGFESGVWYQNKSYYIASECHEIYAPPTSTISSPETTTLTKITKRSLKKDYTNLIEWEHKTVGKYKIAGLNSDEGWEMMKAIEDDIRSNWLDMVSCSRKISKKDLLTFFGSEDFHETKNWIDCGLASGLMDGDKIIMGLSKRFGPPLDFKIYSQVKKCTVGISNSRENIGIIRVCGAIDYGGDIMVHDLIENIRRVGSSKSLKAIILRIDSPGGNVLLADQLWREINILASKIPVISSLSDEAASGAYLIATGAGTIVAEKLTIIGSIGVRLSRANIKKIYEYFGFKKEVLSKGKYAELFENDHRLLMPHEEERIKNELQEIYKHFVDKVAMARSLSVDEVEEIAQGRLWTGKAAMNNRLVDALGGLSRAVAIAKLKANIPQNRPINLSGCCMLSKDCGHTNPDCNAWSNDPNVLCFNCKSCEAGLLKSLRTDWKKVAVVNISVLHWLLCIQE*