AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222620 MtrunA17_Chr4g0061881 45.017 582 271 11 36 583 19 585 5.68e-150 449
Msa1222620 MtrunA17_Chr2g0307851 44.213 527 258 7 80 583 84 597 1.23e-142 430
Msa1222620 MtrunA17_Chr4g0069071 41.755 376 203 6 131 499 5 371 3.26e-77 251
Msa1222620 MtrunA17_Chr4g0073611 35.922 309 156 8 150 451 2 275 1.70e-48 171
Msa1222620 MtrunA17_Chr5g0408331 32.216 388 169 10 56 435 11 312 2.77e-46 166
Msa1222620 MtrunA17_Chr4g0061841 35.390 308 107 7 149 448 8 231 4.30e-45 160
Msa1222620 MtrunA17_Chr4g0076561 43.284 201 86 2 344 544 14 186 5.48e-45 158
Msa1222620 MtrunA17_Chr8g0344851 45.029 171 81 2 417 583 1 162 1.37e-36 135
Msa1222620 MtrunA17_Chr5g0437391 29.381 388 196 12 204 584 5 321 5.98e-36 138
Msa1222620 MtrunA17_Chr4g0061831 54.808 104 47 0 480 583 10 113 5.27e-35 128
Msa1222620 MtrunA17_Chr4g0064001 39.766 171 82 4 442 605 4 160 3.91e-28 112
Msa1222620 MtrunA17_Chr4g0076571 53.012 83 30 2 145 227 1 74 1.63e-22 92.4
Msa1222620 MtrunA17_Chr8g0344821 59.091 66 27 0 518 583 38 103 2.47e-22 92.8
Msa1222620 MtrunA17_Chr5g0437441 44.144 111 47 4 105 212 4 102 4.38e-21 88.6
Msa1222620 MtrunA17_Chr8g0344831 47.500 120 56 4 324 438 1 118 8.27e-21 88.6
Msa1222620 MtrunA17_Chr4g0073251 57.971 69 13 1 584 636 169 237 2.68e-18 85.5
Msa1222620 MtrunA17_Chr5g0437451 61.111 54 21 0 533 586 98 151 1.48e-16 77.4
Msa1222620 MtrunA17_Chr4g0069081 53.030 66 31 0 518 583 8 73 1.63e-16 75.9
Msa1222620 MtrunA17_Chr4g0073621 60.000 55 20 1 531 583 1 55 3.99e-15 70.9
Msa1222620 MtrunA17_Chr5g0408341 60.417 48 19 0 536 583 1 48 1.77e-12 65.1
Msa1222620 MtrunA17_Chr5g0447671 41.935 62 34 2 586 647 100 159 3.29e-12 65.5
Msa1222620 MtrunA17_Chr4g0063991 44.444 81 43 1 342 422 2 80 4.24e-12 62.4
Msa1222620 MtrunA17_Chr8g0389221 41.975 81 29 3 584 646 167 247 1.79e-11 65.1
Msa1222620 MtrunA17_Chr4g0030021 35.398 113 54 3 537 631 124 235 2.01e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222620 AT1G73990.1 42.694 527 266 8 80 583 90 603 1.79e-129 397
Msa1222620 AT1G73990.2 40.461 477 248 8 80 533 90 553 1.43e-104 330
Msa1222620 AT2G23810.1 45.455 77 26 1 584 644 170 246 1.20e-13 72.0
Msa1222620 AT3G45600.1 43.836 73 25 1 584 640 172 244 3.37e-12 68.2
Msa1222620 AT4G28050.1 43.421 76 28 1 584 644 170 245 6.39e-12 67.0
Msa1222620 AT4G30430.1 43.056 72 26 1 584 640 170 241 1.91e-11 65.5

Find 158 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTATTGAAACATTAAT+TGG 0.148691 8_1:-86875945 None:intergenic
GTGTCAAGAGCTTTGCTTTA+AGG 0.152698 8_1:-86875764 None:intergenic
AAGAAAATATATGAATATTT+TGG 0.176804 8_1:+86872336 Msa1222620:CDS
GCTGAGAAACTTACTATTAT+AGG 0.182398 8_1:+86872279 Msa1222620:CDS
GTTTGTGGAGCCATCGATTA+TGG 0.236591 8_1:+86872024 Msa1222620:CDS
GGATGGTGACAAGATTATTA+TGG 0.245096 8_1:+86871894 Msa1222620:CDS
TGGATTAGCTTCAGGGTTAA+TGG 0.250434 8_1:+86871873 Msa1222620:CDS
TATTAGCATGTAGATGATTT+AGG 0.257669 8_1:+86875517 Msa1222620:three_prime_UTR
AAGATCTAATTGGCTTGATA+TGG 0.258838 8_1:+86871762 Msa1222620:CDS
TACTAAGAGATCTTTGAAAA+AGG 0.265162 8_1:+86871630 Msa1222620:CDS
TATTGTTGGCTGATCAATTA+TGG 0.276033 8_1:+86872151 Msa1222620:CDS
CCATTGGTTGCTGTGCATTC+AGG 0.281802 8_1:+86875433 Msa1222620:CDS
ATTGTTCATTGCTGCCTTAC+CGG 0.295628 8_1:-86872556 None:intergenic
GAGAGTTCAACCAGATTAAT+AGG 0.301916 8_1:-86872657 None:intergenic
AAGCTCTTGACACAATTAAA+TGG 0.304664 8_1:+86875774 Msa1222620:three_prime_UTR
CAATTGAAGCACAAAACATT+TGG 0.314542 8_1:-86875332 None:intergenic
TTCGATTTCGTTCCGCTCTC+TGG 0.315989 8_1:+86871175 Msa1222620:CDS
TGTCAAGAGCTTTGCTTTAA+GGG 0.328140 8_1:-86875763 None:intergenic
CTTACTATTATAGGTTCAAT+TGG 0.329531 8_1:+86872288 Msa1222620:CDS
AGGCTAATATACCTCAAAAT+AGG 0.333847 8_1:+86872634 Msa1222620:CDS
AGGTATATTAGCCTTCAATT+TGG 0.345021 8_1:-86872625 None:intergenic
ATAGATTGTGGATTAGCTTC+AGG 0.355026 8_1:+86871865 Msa1222620:CDS
ATCGGTATTATTAGAGTTTG+TGG 0.362941 8_1:+86872009 Msa1222620:CDS
ATGGGTCTCAGTAAGAGATT+TGG 0.365012 8_1:+86871913 Msa1222620:CDS
TGTAGATGATTTAGGCCATT+TGG 0.369425 8_1:+86875525 Msa1222620:three_prime_UTR
TCAAAATAGGCCTATTAATC+TGG 0.371007 8_1:+86872647 Msa1222620:CDS
TTCTCATCCTCTTCATCTTA+CGG 0.376793 8_1:+86870991 Msa1222620:CDS
ATATTCAATTTCAAGAAATC+TGG 0.381689 8_1:+86871451 Msa1222620:CDS
AATTGCAAATCTTGCGAGGC+TGG 0.383646 8_1:+86875350 Msa1222620:CDS
TGAAAAGCCTTAGGACTGAT+TGG 0.383930 8_1:+86875378 Msa1222620:CDS
AGATTGCCCAAGGGCGACTT+TGG 0.388070 8_1:+86872532 Msa1222620:CDS
AAGAAAGAGGTTCTTTCTAA+AGG 0.390182 8_1:+86872363 Msa1222620:CDS
TAACAGAAGGGAAACCAGTT+TGG 0.392243 8_1:-86875678 None:intergenic
TTGATATGGTTTCTTGTTCA+AGG 0.394731 8_1:+86871776 Msa1222620:CDS
AGGATGATATAAGATCTAAT+TGG 0.395182 8_1:+86871752 Msa1222620:CDS
CGATTATGGAGGTGATATAA+TGG 0.397941 8_1:+86872038 Msa1222620:CDS
AATTAATGTTTCAATAATCA+AGG 0.398099 8_1:+86875947 Msa1222620:three_prime_UTR
CTGTTGGTATATCAAATAGT+AGG 0.400153 8_1:+86871980 Msa1222620:CDS
AATTTAAGAGACATAATGTT+TGG 0.404784 8_1:-86875815 None:intergenic
TACCGGTCCAAAGTCGCCCT+TGG 0.405887 8_1:-86872539 None:intergenic
GTGGGCAAATATAAAATTGC+AGG 0.407744 8_1:+86871688 Msa1222620:CDS
TTGAGGGGTTTGTGAATTTG+AGG 0.427452 8_1:-86871019 None:intergenic
GATGGTGACAAGATTATTAT+GGG 0.430367 8_1:+86871895 Msa1222620:CDS
GCTGTGCATTCAGGAATAAC+AGG 0.437794 8_1:+86875442 Msa1222620:exon
ATGTTCCCATTCGATAAGAT+TGG 0.439661 8_1:-86871659 None:intergenic
TTAGACATGTTTGACCAAAC+TGG 0.440210 8_1:+86875664 Msa1222620:three_prime_UTR
GAGTCAAACTGCACTCAAAC+AGG 0.440848 8_1:-86875585 None:intergenic
ACCTGAGAGTCGGTGCCAAC+TGG 0.441099 8_1:-86871301 None:intergenic
GGTGCATATTTGATTGCAAC+TGG 0.441687 8_1:+86872240 Msa1222620:CDS
CTCATCTACACTTAATGATC+TGG 0.441800 8_1:-86872502 None:intergenic
TGATTATTGAAACATTAATT+GGG 0.443915 8_1:-86875944 None:intergenic
TAGATTGTGGATTAGCTTCA+GGG 0.444789 8_1:+86871866 Msa1222620:CDS
TATTTGATTGCAACTGGAGC+AGG 0.455192 8_1:+86872246 Msa1222620:CDS
GTAAGGCAGCAATGAACAAT+AGG 0.470115 8_1:+86872559 Msa1222620:CDS
ACCGGTCCAAAGTCGCCCTT+GGG 0.473423 8_1:-86872538 None:intergenic
ACCAGTTGGCACCGACTCTC+AGG 0.474513 8_1:+86871300 Msa1222620:CDS
CTGGCTTACTGAAAAGCCTT+AGG 0.478137 8_1:+86875369 Msa1222620:CDS
TGAGGGGTTTGTGAATTTGA+GGG 0.479572 8_1:-86871018 None:intergenic
TATCTGTCTTCTAATTTCAT+CGG 0.482157 8_1:-86871431 None:intergenic
AACAGTGTTGATTATTCGAC+CGG 0.483950 8_1:+86871148 Msa1222620:CDS
GATGAGAAATAAAGTGTGAA+TGG 0.486767 8_1:-86870976 None:intergenic
TCCAGGAGGGAATGTATTGT+TGG 0.487832 8_1:+86872137 Msa1222620:CDS
GCAGGCTTAAATTCAGATGA+AGG 0.489639 8_1:+86871706 Msa1222620:CDS
TCAAATAGTAGGGAAAATAT+CGG 0.490155 8_1:+86871991 Msa1222620:CDS
ATTGAGAATATCCGTAGGGT+TGG 0.499628 8_1:+86872072 Msa1222620:CDS
ACTGGCTGCCTCATCTGATA+AGG 0.501161 8_1:-86872217 None:intergenic
TTGAGAATATCCGTAGGGTT+GGG 0.501994 8_1:+86872073 Msa1222620:CDS
AACCAGCATATAAAACCAAA+TGG 0.502225 8_1:-86875540 None:intergenic
GAGGGGTTTGTGAATTTGAG+GGG 0.502643 8_1:-86871017 None:intergenic
GTGTGAATGGTTTGCGATGG+AGG 0.503001 8_1:-86870963 None:intergenic
CTTCTGTTAAAGCAAGCTCT+TGG 0.507466 8_1:+86875692 Msa1222620:three_prime_UTR
TTAGACCAAGCATTACAGTC+AGG 0.509950 8_1:-86875305 None:intergenic
CCTTCTTCCAATCAGTCCTA+AGG 0.510848 8_1:-86875385 None:intergenic
GGAATAACAGGAGGGATGGT+TGG 0.513083 8_1:+86875454 Msa1222620:exon
GCCTCGGAGCGTGTCGAACA+TGG 0.517250 8_1:+86871235 Msa1222620:CDS
TCAACATTAGTGTACTCCAT+TGG 0.517441 8_1:+86875417 Msa1222620:CDS
CAAGAGCTTGCTTTAACAGA+AGG 0.519724 8_1:-86875691 None:intergenic
GAATGTGAATGGTCTGTGAA+TGG 0.524062 8_1:-86871092 None:intergenic
CTGCACACCATCTTCGATTG+TGG 0.524754 8_1:+86871048 Msa1222620:CDS
TCAACACTGTTACCTTTACC+TGG 0.525067 8_1:-86871136 None:intergenic
AACCTCTACGATCTCTTCTC+CGG 0.527699 8_1:+86871585 Msa1222620:CDS
CATTCTTGCATCTAAGATAC+CGG 0.530035 8_1:+86872185 Msa1222620:CDS
TGCAATCAAATATGCACCAC+TGG 0.530834 8_1:-86872235 None:intergenic
TGTTGCTATAGCCAAATTGA+AGG 0.532127 8_1:+86872614 Msa1222620:CDS
CTTAAATTCAGATGAAGGAT+GGG 0.532180 8_1:+86871711 Msa1222620:CDS
ATTACACCAATCTTATCGAA+TGG 0.535345 8_1:+86871653 Msa1222620:CDS
GGAAATGATGAAGGCAATTG+AGG 0.537388 8_1:+86871732 Msa1222620:CDS
TGGGTCGAAAAGATTTAAAA+CGG 0.537784 8_1:-86871072 None:intergenic
TTACACCAATCTTATCGAAT+GGG 0.537864 8_1:+86871654 Msa1222620:CDS
ACCTTTACCTGGAGTAGAAG+TGG 0.539130 8_1:-86871125 None:intergenic
AGGGCGACTTTGGACCGGTA+AGG 0.542327 8_1:+86872542 Msa1222620:CDS
GCTTAAATTCAGATGAAGGA+TGG 0.545084 8_1:+86871710 Msa1222620:CDS
ATGGTGTGCAGTGGAATTTG+AGG 0.545985 8_1:-86871036 None:intergenic
TTAGTAAGAGTAGTTGTCTC+CGG 0.546132 8_1:-86871604 None:intergenic
GAAGAGATCGTAGAGGTTGG+AGG 0.546294 8_1:-86871580 None:intergenic
GCCAACAATACATTCCCTCC+TGG 0.546346 8_1:-86872138 None:intergenic
TTGATGCGCTCTTCTTCATG+TGG 0.546362 8_1:-86872429 None:intergenic
CTTTAAGGGAAGCCTAAAAG+TGG 0.546723 8_1:-86875749 None:intergenic
TGGTGTGCAGTGGAATTTGA+GGG 0.550066 8_1:-86871035 None:intergenic
GGAGAAGAGATCGTAGAGGT+TGG 0.556545 8_1:-86871583 None:intergenic
TCCACTTCTACTCCAGGTAA+AGG 0.557566 8_1:+86871124 Msa1222620:CDS
TACTACTAGACTGCGCCGCA+CGG 0.560360 8_1:+86875842 Msa1222620:three_prime_UTR
CCTTAGGACTGATTGGAAGA+AGG 0.562109 8_1:+86875385 Msa1222620:CDS
AAACGGTCCACAATCGAAGA+TGG 0.562971 8_1:-86871055 None:intergenic
TGGATGTTGTATGCTTTCAA+AGG 0.565529 8_1:+86875265 Msa1222620:CDS
GATGAAAAGTAGAATGTGAA+TGG 0.566518 8_1:-86871103 None:intergenic
GTTTGAAGGCTATAATCCTA+CGG 0.566827 8_1:+86872106 Msa1222620:CDS
ACTACTAGACTGCGCCGCAC+GGG 0.567003 8_1:+86875843 Msa1222620:three_prime_UTR
CCAACCCTGACTGTAATGCT+TGG 0.568817 8_1:+86875300 Msa1222620:CDS
TGTTGGTATATCAAATAGTA+GGG 0.568964 8_1:+86871981 Msa1222620:CDS
TGAAGGATGGGAAATGATGA+AGG 0.569473 8_1:+86871723 Msa1222620:CDS
GGCAGCAATGAACAATAGGT+TGG 0.572321 8_1:+86872563 Msa1222620:CDS
TTCAGGAATAACAGGAGGGA+TGG 0.575083 8_1:+86875450 Msa1222620:exon
CTCTCAAAACCCCAAAATGT+AGG 0.578078 8_1:-86871496 None:intergenic
AATGTGAATGGTCTGTGAAT+GGG 0.582701 8_1:-86871091 None:intergenic
AAGAGCTTGCTTTAACAGAA+GGG 0.583732 8_1:-86875690 None:intergenic
CGGAACGAAATCGAAATCTC+CGG 0.584439 8_1:-86871167 None:intergenic
AATAGGTTGGTTGATGCGCT+AGG 0.587278 8_1:+86872576 Msa1222620:CDS
TCTGATAAGGAAGAAATGAC+CGG 0.587654 8_1:-86872204 None:intergenic
CAGATCATTAAGTGTAGATG+AGG 0.588798 8_1:+86872503 Msa1222620:CDS
GGGGTTTCCGTAAGATGAAG+AGG 0.593634 8_1:-86870998 None:intergenic
CATTTCTTCCTTATCAGATG+AGG 0.593943 8_1:+86872209 Msa1222620:CDS
GATCAAGACTCTGTTAGCCT+CGG 0.596334 8_1:+86871219 Msa1222620:CDS
CAATCGAAGATGGTGTGCAG+TGG 0.598273 8_1:-86871045 None:intergenic
TAGACCAAGCATTACAGTCA+GGG 0.599327 8_1:-86875304 None:intergenic
CTTCAATTGCAAATCTTGCG+AGG 0.599666 8_1:+86875346 Msa1222620:CDS
TTAGCTTCAGGGTTAATGGA+TGG 0.600853 8_1:+86871877 Msa1222620:CDS
ATCCTACGGATTGACAGTCC+AGG 0.601328 8_1:+86872120 Msa1222620:CDS
CCTGAATGCACAGCAACCAA+TGG 0.605356 8_1:-86875433 None:intergenic
TTTGATTGAGAATATCCGTA+GGG 0.609950 8_1:+86872068 Msa1222620:CDS
TATATCACCTCCATAATCGA+TGG 0.612527 8_1:-86872034 None:intergenic
GAGGTTGAAGAGATTGCCCA+AGG 0.622061 8_1:+86872522 Msa1222620:CDS
CTCCTGGACTGTCAATCCGT+AGG 0.622715 8_1:-86872122 None:intergenic
CTTTGTAGACAAGGTAGCGA+TGG 0.623654 8_1:+86872479 Msa1222620:CDS
AACTATTTGAGAATGATCAT+CGG 0.625097 8_1:+86872397 Msa1222620:CDS
GAATGGGAACATAAGACAGT+GGG 0.628199 8_1:+86871670 Msa1222620:CDS
CCAAGCATTACAGTCAGGGT+TGG 0.629900 8_1:-86875300 None:intergenic
ATTTGATTGAGAATATCCGT+AGG 0.630652 8_1:+86872067 Msa1222620:CDS
TTACAAACACTTTGTAGACA+AGG 0.630675 8_1:+86872470 Msa1222620:CDS
AAAGTGTGAATGGTTTGCGA+TGG 0.637871 8_1:-86870966 None:intergenic
GGTGTGCAGTGGAATTTGAG+GGG 0.647885 8_1:-86871034 None:intergenic
GTGCATTCAGGAATAACAGG+AGG 0.649237 8_1:+86875445 Msa1222620:exon
AGGTTGGTTGATGCGCTAGG+TGG 0.658606 8_1:+86872579 Msa1222620:CDS
TGTGGAGCCATCGATTATGG+AGG 0.660667 8_1:+86872027 Msa1222620:CDS
TACGGATTGACAGTCCAGGA+GGG 0.661634 8_1:+86872124 Msa1222620:CDS
TTATCAGATGAGGCAGCCAG+TGG 0.663360 8_1:+86872219 Msa1222620:CDS
TAAAGACAATACCTGAGAGT+CGG 0.663419 8_1:-86871311 None:intergenic
TGCATTCAGGAATAACAGGA+GGG 0.668569 8_1:+86875446 Msa1222620:exon
CTACGGATTGACAGTCCAGG+AGG 0.672726 8_1:+86872123 Msa1222620:CDS
AGGTTGAAGAGATTGCCCAA+GGG 0.677412 8_1:+86872523 Msa1222620:CDS
CGAATGGGAACATAAGACAG+TGG 0.682407 8_1:+86871669 Msa1222620:CDS
ACCATGTTCGACACGCTCCG+AGG 0.691925 8_1:-86871236 None:intergenic
ACAAATAGAGCAGACACGCG+AGG 0.694628 8_1:-86871373 None:intergenic
TATTTCTTAAAACCAGAGAG+CGG 0.701941 8_1:-86871187 None:intergenic
CTCCGGAGAAGAGATCGTAG+AGG 0.751065 8_1:-86871587 None:intergenic
TGTATGCTTTCAAAGGACTG+TGG 0.762393 8_1:+86875272 Msa1222620:CDS
AGACACGCGAGGATCATATG+CGG 0.776119 8_1:-86871362 None:intergenic
TTTAGCTCATAAGACCCGTG+CGG 0.777545 8_1:-86875857 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAAATATATGAATATTT+TGG + chr8_1:86872336-86872355 Msa1222620:CDS 10.0%
!!! AGATTATTATTGATATTTTT+AGG + chr8_1:86873723-86873742 Msa1222620:intron 10.0%
!!! ATTTTCATGAAACAAAAAAT+TGG + chr8_1:86871842-86871861 Msa1222620:CDS 15.0%
!!! TTTACATATAGTATTTTGAT+TGG + chr8_1:86873423-86873442 Msa1222620:intron 15.0%
!! ATCAATAATAATCTAATGTA+AGG - chr8_1:86873717-86873736 None:intergenic 15.0%
!! AATGTATTTGGTTAATATAT+GGG - chr8_1:86874087-86874106 None:intergenic 15.0%
!! TAATGTATTTGGTTAATATA+TGG - chr8_1:86874088-86874107 None:intergenic 15.0%
!!! TTTGTAAATTTTTAGACTTA+TGG + chr8_1:86875210-86875229 Msa1222620:intron 15.0%
!! TGATTATTGAAACATTAATT+GGG - chr8_1:86875947-86875966 None:intergenic 15.0%
!! TTGATTATTGAAACATTAAT+TGG - chr8_1:86875948-86875967 None:intergenic 15.0%
!! AATTAATGTTTCAATAATCA+AGG + chr8_1:86875947-86875966 Msa1222620:three_prime_UTR 15.0%
!!! ATATTTTTCTGTACATGTTA+CGG - chr8_1:86870934-86870953 None:intergenic 20.0%
!! ATATTCAATTTCAAGAAATC+TGG + chr8_1:86871451-86871470 Msa1222620:CDS 20.0%
!! TTCAAGGAAAATATCAAAAA+AGG + chr8_1:86871792-86871811 Msa1222620:CDS 20.0%
!!! ATATTTTGGTTTTAAGAAAG+AGG + chr8_1:86872350-86872369 Msa1222620:CDS 20.0%
!! GAAAGCTTATAAGAATTATT+TGG - chr8_1:86872870-86872889 None:intergenic 20.0%
!!! TTTTTAAAGTAATTAGCGTA+TGG - chr8_1:86873155-86873174 None:intergenic 20.0%
!! GTTAATTACTTATTTCGTTA+TGG + chr8_1:86873336-86873355 Msa1222620:intron 20.0%
!! TCTCATATTAAAATATCTGT+TGG + chr8_1:86873466-86873485 Msa1222620:intron 20.0%
!! ACGTATAAATAGACTTATAT+GGG - chr8_1:86873649-86873668 None:intergenic 20.0%
!!! TTCTAGAACTAAAATAAACT+AGG + chr8_1:86873681-86873700 Msa1222620:intron 20.0%
!!! TCCATTTTTATTTATTGCTT+GGG + chr8_1:86874529-86874548 Msa1222620:intron 20.0%
!! ATTGAAACTTAAATTGATCA+TGG - chr8_1:86875023-86875042 None:intergenic 20.0%
!! CAGGAAAAGAAAAAAAAAAA+TGG - chr8_1:86875240-86875259 None:intergenic 20.0%
!! AATTTAAGAGACATAATGTT+TGG - chr8_1:86875818-86875837 None:intergenic 20.0%
!!! CTCTGGTTTTAAGAAATATA+TGG + chr8_1:86871192-86871211 Msa1222620:CDS 25.0%
!!! TAGTGTTTTGAGAATCAATT+TGG + chr8_1:86871258-86871277 Msa1222620:CDS 25.0%
!!! TATATAGATGCTTTTGATTG+TGG + chr8_1:86871397-86871416 Msa1222620:CDS 25.0%
! TATCTGTCTTCTAATTTCAT+CGG - chr8_1:86871434-86871453 None:intergenic 25.0%
!! TACTAAGAGATCTTTGAAAA+AGG + chr8_1:86871630-86871649 Msa1222620:CDS 25.0%
! AGGATGATATAAGATCTAAT+TGG + chr8_1:86871752-86871771 Msa1222620:CDS 25.0%
! ACAAAAAATTGGATAGATTG+TGG + chr8_1:86871853-86871872 Msa1222620:CDS 25.0%
! TGTTGGTATATCAAATAGTA+GGG + chr8_1:86871981-86872000 Msa1222620:CDS 25.0%
! TCAAATAGTAGGGAAAATAT+CGG + chr8_1:86871991-86872010 Msa1222620:CDS 25.0%
! CTTACTATTATAGGTTCAAT+TGG + chr8_1:86872288-86872307 Msa1222620:CDS 25.0%
! AACTATTTGAGAATGATCAT+CGG + chr8_1:86872397-86872416 Msa1222620:CDS 25.0%
! TATTCAGCAATCCTAAAAAA+CGG - chr8_1:86872742-86872761 None:intergenic 25.0%
! AAGAATTATTTGGTACTACA+CGG - chr8_1:86872860-86872879 None:intergenic 25.0%
! AAATAGATAGTAGTCAATCT+CGG - chr8_1:86873093-86873112 None:intergenic 25.0%
! AAAAACATAGAACTCAAAAC+AGG - chr8_1:86873367-86873386 None:intergenic 25.0%
! ATTAGGAATTAACTCATTGT+AGG + chr8_1:86873551-86873570 Msa1222620:intron 25.0%
! TGCAATGTCAATAATATTGA+AGG - chr8_1:86873601-86873620 None:intergenic 25.0%
! CACGTATAAATAGACTTATA+TGG - chr8_1:86873650-86873669 None:intergenic 25.0%
! AGATTGTTCTATTAATGACT+AGG - chr8_1:86873760-86873779 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr8_1:86874134-86874153 None:intergenic 25.0%
! CATTGAATACATAATGTGTT+TGG + chr8_1:86874061-86874080 Msa1222620:intron 25.0%
! CACTCAATTCTTAATGTATT+TGG - chr8_1:86874099-86874118 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr8_1:86874134-86874153 Msa1222620:intron 25.0%
! ATAACAAATATTATGGCAAG+AGG - chr8_1:86874182-86874201 None:intergenic 25.0%
!!! CTTGCCATAATATTTGTTAT+TGG + chr8_1:86874182-86874201 Msa1222620:intron 25.0%
! GAGACCAATAACAAATATTA+TGG - chr8_1:86874189-86874208 None:intergenic 25.0%
! TAGTAATTACATTCTTGACA+GGG + chr8_1:86874432-86874451 Msa1222620:intron 25.0%
!!! CTCCATTTTTATTTATTGCT+TGG + chr8_1:86874528-86874547 Msa1222620:intron 25.0%
!!! ATAGACTGAATTTTCTAGTT+TGG + chr8_1:86874734-86874753 Msa1222620:intron 25.0%
! ATTAGGAATTAAGTCATTGT+AGG + chr8_1:86874907-86874926 Msa1222620:intron 25.0%
!!! TTTACCAGTAATTTTTTGCT+AGG + chr8_1:86875090-86875109 Msa1222620:intron 25.0%
!!! AATTTTCTGAAATCAAGGAA+TGG - chr8_1:86875145-86875164 None:intergenic 25.0%
!!! GAATCAATTTTCTGAAATCA+AGG - chr8_1:86875150-86875169 None:intergenic 25.0%
!! AATGTTTGATGTATTTCTGT+TGG + chr8_1:86875173-86875192 Msa1222620:intron 25.0%
! AAAATTTACAAACCAGAAAC+CGG - chr8_1:86875202-86875221 None:intergenic 25.0%
! TATTAGCATGTAGATGATTT+AGG + chr8_1:86875517-86875536 Msa1222620:three_prime_UTR 25.0%
!! TTTCGTAATGTATTTTGTCT+TGG + chr8_1:86875884-86875903 Msa1222620:three_prime_UTR 25.0%
GATGAGAAATAAAGTGTGAA+TGG - chr8_1:86870979-86870998 None:intergenic 30.0%
TGGGTCGAAAAGATTTAAAA+CGG - chr8_1:86871075-86871094 None:intergenic 30.0%
GATGAAAAGTAGAATGTGAA+TGG - chr8_1:86871106-86871125 None:intergenic 30.0%
TATTTCTTAAAACCAGAGAG+CGG - chr8_1:86871190-86871209 None:intergenic 30.0%
!!! GTTTTGAGAATCAATTTGGA+AGG + chr8_1:86871262-86871281 Msa1222620:CDS 30.0%
! ATAAGATTTTCGCTTAGTTG+AGG - chr8_1:86871337-86871356 None:intergenic 30.0%
!! TTGCTTTTATGCCTACATTT+TGG + chr8_1:86871485-86871504 Msa1222620:CDS 30.0%
! TGCTTTTATGCCTACATTTT+GGG + chr8_1:86871486-86871505 Msa1222620:CDS 30.0%
ATTACACCAATCTTATCGAA+TGG + chr8_1:86871653-86871672 Msa1222620:CDS 30.0%
TTACACCAATCTTATCGAAT+GGG + chr8_1:86871654-86871673 Msa1222620:CDS 30.0%
CTTAAATTCAGATGAAGGAT+GGG + chr8_1:86871711-86871730 Msa1222620:CDS 30.0%
!! AAGATCTAATTGGCTTGATA+TGG + chr8_1:86871762-86871781 Msa1222620:CDS 30.0%
TTGATATGGTTTCTTGTTCA+AGG + chr8_1:86871776-86871795 Msa1222620:CDS 30.0%
!!! AAGGACCTTCTAACTTTTTT+CGG + chr8_1:86871811-86871830 Msa1222620:CDS 30.0%
GATGGTGACAAGATTATTAT+GGG + chr8_1:86871895-86871914 Msa1222620:CDS 30.0%
!!! GAATATATTTTGAAGTCGAG+CGG - chr8_1:86871943-86871962 None:intergenic 30.0%
CTGTTGGTATATCAAATAGT+AGG + chr8_1:86871980-86871999 Msa1222620:CDS 30.0%
ATCGGTATTATTAGAGTTTG+TGG + chr8_1:86872009-86872028 Msa1222620:CDS 30.0%
ATTTGATTGAGAATATCCGT+AGG + chr8_1:86872067-86872086 Msa1222620:CDS 30.0%
TTTGATTGAGAATATCCGTA+GGG + chr8_1:86872068-86872087 Msa1222620:CDS 30.0%
! TATTGTTGGCTGATCAATTA+TGG + chr8_1:86872151-86872170 Msa1222620:CDS 30.0%
GCTGAGAAACTTACTATTAT+AGG + chr8_1:86872279-86872298 Msa1222620:CDS 30.0%
AAGAAAGAGGTTCTTTCTAA+AGG + chr8_1:86872363-86872382 Msa1222620:CDS 30.0%
TTACAAACACTTTGTAGACA+AGG + chr8_1:86872470-86872489 Msa1222620:CDS 30.0%
!! AGGTATATTAGCCTTCAATT+TGG - chr8_1:86872628-86872647 None:intergenic 30.0%
AGGCTAATATACCTCAAAAT+AGG + chr8_1:86872634-86872653 Msa1222620:CDS 30.0%
! AGATTAATAGGCCTATTTTG+AGG - chr8_1:86872648-86872667 None:intergenic 30.0%
TCAAAATAGGCCTATTAATC+TGG + chr8_1:86872647-86872666 Msa1222620:CDS 30.0%
! ACTACACGGTTAAGAATTTT+GGG - chr8_1:86872846-86872865 None:intergenic 30.0%
! TACTACACGGTTAAGAATTT+TGG - chr8_1:86872847-86872866 None:intergenic 30.0%
TATGTACATGAAGAATCGTT+TGG - chr8_1:86873259-86873278 None:intergenic 30.0%
! TTTTATGCTCAACTTGTACA+TGG + chr8_1:86873385-86873404 Msa1222620:intron 30.0%
GGAAAATATAGTGTTAAGAG+AGG + chr8_1:86873487-86873506 Msa1222620:intron 30.0%
TTATTGACATTGCATCTCAA+AGG + chr8_1:86873607-86873626 Msa1222620:intron 30.0%
AATCTATGTTTGAGCAACTA+CGG - chr8_1:86873920-86873939 None:intergenic 30.0%
ATTGTTGAAGATTTCTGACA+GGG + chr8_1:86874335-86874354 Msa1222620:intron 30.0%
CTAGTAATTACATTCTTGAC+AGG + chr8_1:86874431-86874450 Msa1222620:intron 30.0%
GCCCAAGCAATAAATAAAAA+TGG - chr8_1:86874533-86874552 None:intergenic 30.0%
!! TCTATTGCCTTCTTAGTTTT+GGG + chr8_1:86874654-86874673 Msa1222620:intron 30.0%
GTTTAAACCCAAAACTAAGA+AGG - chr8_1:86874664-86874683 None:intergenic 30.0%
AGTCTATGACTCAAAACAAA+AGG - chr8_1:86874721-86874740 None:intergenic 30.0%
!!! ACTGAATTTTCTAGTTTGGT+AGG + chr8_1:86874738-86874757 Msa1222620:intron 30.0%
TTCATGCTGTAGAAAATAGT+TGG + chr8_1:86874770-86874789 Msa1222620:intron 30.0%
GTTGTGGTGTAAGAAAAAAA+AGG + chr8_1:86874878-86874897 Msa1222620:intron 30.0%
GAAAAAAAAGGACACACATT+AGG + chr8_1:86874890-86874909 Msa1222620:intron 30.0%
CAATCCTAGCAAAAAATTAC+TGG - chr8_1:86875097-86875116 None:intergenic 30.0%
!!! CAGTAATTTTTTGCTAGGAT+TGG + chr8_1:86875095-86875114 Msa1222620:intron 30.0%
CAATTGAAGCACAAAACATT+TGG - chr8_1:86875335-86875354 None:intergenic 30.0%
AACCAGCATATAAAACCAAA+TGG - chr8_1:86875543-86875562 None:intergenic 30.0%
!!! TATATGCTGGTTTTTTAGTG+TGG + chr8_1:86875551-86875570 Msa1222620:three_prime_UTR 30.0%
!!! ATATGCTGGTTTTTTAGTGT+GGG + chr8_1:86875552-86875571 Msa1222620:three_prime_UTR 30.0%
!!! GTTTGACTCTGCTTTTTAAA+TGG + chr8_1:86875599-86875618 Msa1222620:three_prime_UTR 30.0%
!! GTTGACATTTTACCACTTTT+AGG + chr8_1:86875737-86875756 Msa1222620:three_prime_UTR 30.0%
AAGCTCTTGACACAATTAAA+TGG + chr8_1:86875774-86875793 Msa1222620:three_prime_UTR 30.0%
! TTTTTCTGTACATGTTACGG+AGG - chr8_1:86870931-86870950 None:intergenic 35.0%
TTCTCATCCTCTTCATCTTA+CGG + chr8_1:86870991-86871010 Msa1222620:CDS 35.0%
AATGTGAATGGTCTGTGAAT+GGG - chr8_1:86871094-86871113 None:intergenic 35.0%
!! AACAGTGTTGATTATTCGAC+CGG + chr8_1:86871148-86871167 Msa1222620:CDS 35.0%
! TTGGAAGGAAAGTTTTCAGA+TGG + chr8_1:86871277-86871296 Msa1222620:CDS 35.0%
TAAAGACAATACCTGAGAGT+CGG - chr8_1:86871314-86871333 None:intergenic 35.0%
!! TAGATGCTTTTGATTGTGGT+TGG + chr8_1:86871401-86871420 Msa1222620:CDS 35.0%
!! AGATGCTTTTGATTGTGGTT+GGG + chr8_1:86871402-86871421 Msa1222620:CDS 35.0%
! GCTTTTATGCCTACATTTTG+GGG + chr8_1:86871487-86871506 Msa1222620:CDS 35.0%
TTAGTAAGAGTAGTTGTCTC+CGG - chr8_1:86871607-86871626 None:intergenic 35.0%
ATGTTCCCATTCGATAAGAT+TGG - chr8_1:86871662-86871681 None:intergenic 35.0%
GTGGGCAAATATAAAATTGC+AGG + chr8_1:86871688-86871707 Msa1222620:CDS 35.0%
GCTTAAATTCAGATGAAGGA+TGG + chr8_1:86871710-86871729 Msa1222620:CDS 35.0%
CACTACCGAAAAAAGTTAGA+AGG - chr8_1:86871819-86871838 None:intergenic 35.0%
!!! TCTAACTTTTTTCGGTAGTG+AGG + chr8_1:86871819-86871838 Msa1222620:CDS 35.0%
!! ATAGATTGTGGATTAGCTTC+AGG + chr8_1:86871865-86871884 Msa1222620:CDS 35.0%
!! TAGATTGTGGATTAGCTTCA+GGG + chr8_1:86871866-86871885 Msa1222620:CDS 35.0%
GGATGGTGACAAGATTATTA+TGG + chr8_1:86871894-86871913 Msa1222620:CDS 35.0%
! CAAGTTAAAAAGTGCACTGT+TGG + chr8_1:86871964-86871983 Msa1222620:CDS 35.0%
TATATCACCTCCATAATCGA+TGG - chr8_1:86872037-86872056 None:intergenic 35.0%
CGATTATGGAGGTGATATAA+TGG + chr8_1:86872038-86872057 Msa1222620:CDS 35.0%
TGGGTCATCAAAAAGTTTGA+AGG + chr8_1:86872092-86872111 Msa1222620:CDS 35.0%
GTTTGAAGGCTATAATCCTA+CGG + chr8_1:86872106-86872125 Msa1222620:CDS 35.0%
! CATTCTTGCATCTAAGATAC+CGG + chr8_1:86872185-86872204 Msa1222620:CDS 35.0%
TCTGATAAGGAAGAAATGAC+CGG - chr8_1:86872207-86872226 None:intergenic 35.0%
CATTTCTTCCTTATCAGATG+AGG + chr8_1:86872209-86872228 Msa1222620:CDS 35.0%
CTCATCTACACTTAATGATC+TGG - chr8_1:86872505-86872524 None:intergenic 35.0%
CAGATCATTAAGTGTAGATG+AGG + chr8_1:86872503-86872522 Msa1222620:CDS 35.0%
TGTTGCTATAGCCAAATTGA+AGG + chr8_1:86872614-86872633 Msa1222620:CDS 35.0%
GAGAGTTCAACCAGATTAAT+AGG - chr8_1:86872660-86872679 None:intergenic 35.0%
TGAACTCTCTGTGTAATTTG+AGG + chr8_1:86872671-86872690 Msa1222620:intron 35.0%
! TGTAATTTGAGGTTGTAACG+AGG + chr8_1:86872682-86872701 Msa1222620:intron 35.0%
!!! TGTCATACTGACCGTTTTTT+AGG + chr8_1:86872728-86872747 Msa1222620:intron 35.0%
AAAGACTCGTGTTGAATTGT+GGG - chr8_1:86872767-86872786 None:intergenic 35.0%
AAAAGACTCGTGTTGAATTG+TGG - chr8_1:86872768-86872787 None:intergenic 35.0%
! AAAGTTTCTCAGAAAGCATG+CGG - chr8_1:86872810-86872829 None:intergenic 35.0%
! TGCTTTCTGAGAAACTTTCT+AGG + chr8_1:86872812-86872831 Msa1222620:intron 35.0%
!!! ACGGTTAAGAATTTTGGGAT+GGG - chr8_1:86872841-86872860 None:intergenic 35.0%
TTAGACGAACCGAATCATAT+CGG - chr8_1:86872942-86872961 None:intergenic 35.0%
CGAAATATATCAGCTACATG+CGG - chr8_1:86873122-86873141 None:intergenic 35.0%
! AGTGATAGTGCAGTGTTATT+TGG + chr8_1:86873199-86873218 Msa1222620:intron 35.0%
! TTTTTGTATGACACACGTTC+AGG + chr8_1:86873293-86873312 Msa1222620:intron 35.0%
TATAGTGTTAAGAGAGGTTG+TGG + chr8_1:86873493-86873512 Msa1222620:intron 35.0%
AGGAATTAACTCATTGTAGG+AGG + chr8_1:86873554-86873573 Msa1222620:intron 35.0%
AGTTTCCGAAATATGCATCA+AGG - chr8_1:86873886-86873905 None:intergenic 35.0%
ATGAAGAATATCAATGCAGG+AGG - chr8_1:86873956-86873975 None:intergenic 35.0%
! TCCTGCATTGATATTCTTCA+TGG + chr8_1:86873955-86873974 Msa1222620:intron 35.0%
ACCATGAAGAATATCAATGC+AGG - chr8_1:86873959-86873978 None:intergenic 35.0%
TCATGGTTGATCAATTTGAC+AGG + chr8_1:86873972-86873991 Msa1222620:intron 35.0%
CATTATTATGATACTCCCTC+CGG + chr8_1:86874004-86874023 Msa1222620:intron 35.0%
GAAAACTACTAGAGCAACTA+AGG - chr8_1:86874253-86874272 None:intergenic 35.0%
! TTCCTTGTTCGTCTTGTTAA+AGG + chr8_1:86874270-86874289 Msa1222620:intron 35.0%
AATCTTCAACAATGTCGACA+AGG - chr8_1:86874328-86874347 None:intergenic 35.0%
CATTGTTGAAGATTTCTGAC+AGG + chr8_1:86874334-86874353 Msa1222620:intron 35.0%
TCAAGAATACATGAGTGACA+AGG - chr8_1:86874393-86874412 None:intergenic 35.0%
CTTGAGTCTTTAATTGCCAT+AGG + chr8_1:86874569-86874588 Msa1222620:intron 35.0%
AGTTGGACTTGAACTTTAAG+AGG + chr8_1:86874603-86874622 Msa1222620:intron 35.0%
! ACTTGAACTTTAAGAGGATC+AGG + chr8_1:86874609-86874628 Msa1222620:intron 35.0%
AGAAGGCAATAGAGGAATTT+AGG - chr8_1:86874647-86874666 None:intergenic 35.0%
CAAAACTAAGAAGGCAATAG+AGG - chr8_1:86874655-86874674 None:intergenic 35.0%
! CTCTATTGCCTTCTTAGTTT+TGG + chr8_1:86874653-86874672 Msa1222620:intron 35.0%
GATACCACTGTTGGAAAATA+TGG + chr8_1:86874844-86874863 Msa1222620:intron 35.0%
! AACACCATATTTTCCAACAG+TGG - chr8_1:86874851-86874870 None:intergenic 35.0%
! GGAAAATATGGTGTTAAGAG+AGG + chr8_1:86874856-86874875 Msa1222620:intron 35.0%
AGGAATTAAGTCATTGTAGG+AGG + chr8_1:86874910-86874929 Msa1222620:intron 35.0%
GGAATGGCATTAGTAGTTTA+CGG - chr8_1:86875129-86875148 None:intergenic 35.0%
!!! TTTTTTCTTTTCCTGCAGTC+TGG + chr8_1:86875245-86875264 Msa1222620:intron 35.0%
TGGATGTTGTATGCTTTCAA+AGG + chr8_1:86875265-86875284 Msa1222620:CDS 35.0%
TGTAGATGATTTAGGCCATT+TGG + chr8_1:86875525-86875544 Msa1222620:three_prime_UTR 35.0%
TTAGACATGTTTGACCAAAC+TGG + chr8_1:86875664-86875683 Msa1222620:three_prime_UTR 35.0%
! AAGAGCTTGCTTTAACAGAA+GGG - chr8_1:86875693-86875712 None:intergenic 35.0%
TGTCAAGAGCTTTGCTTTAA+GGG - chr8_1:86875766-86875785 None:intergenic 35.0%
! CGTAATGTATTTTGTCTTGG+TGG + chr8_1:86875887-86875906 Msa1222620:three_prime_UTR 35.0%
! AAAGTGTGAATGGTTTGCGA+TGG - chr8_1:86870969-86870988 None:intergenic 40.0%
TGAGGGGTTTGTGAATTTGA+GGG - chr8_1:86871021-86871040 None:intergenic 40.0%
TTGAGGGGTTTGTGAATTTG+AGG - chr8_1:86871022-86871041 None:intergenic 40.0%
GAATGTGAATGGTCTGTGAA+TGG - chr8_1:86871095-86871114 None:intergenic 40.0%
! TTTTCATCCACTTCTACTCC+AGG + chr8_1:86871118-86871137 Msa1222620:CDS 40.0%
TCAACACTGTTACCTTTACC+TGG - chr8_1:86871139-86871158 None:intergenic 40.0%
! AAGTTTTCAGATGGACCAGT+TGG + chr8_1:86871286-86871305 Msa1222620:CDS 40.0%
!! GATGCTTTTGATTGTGGTTG+GGG + chr8_1:86871403-86871422 Msa1222620:CDS 40.0%
CTCTCAAAACCCCAAAATGT+AGG - chr8_1:86871499-86871518 None:intergenic 40.0%
!!! ACATTTTGGGGTTTTGAGAG+TGG + chr8_1:86871499-86871518 Msa1222620:CDS 40.0%
GAATGGGAACATAAGACAGT+GGG + chr8_1:86871670-86871689 Msa1222620:CDS 40.0%
GCAGGCTTAAATTCAGATGA+AGG + chr8_1:86871706-86871725 Msa1222620:CDS 40.0%
TGAAGGATGGGAAATGATGA+AGG + chr8_1:86871723-86871742 Msa1222620:CDS 40.0%
GGAAATGATGAAGGCAATTG+AGG + chr8_1:86871732-86871751 Msa1222620:CDS 40.0%
!! TGGATTAGCTTCAGGGTTAA+TGG + chr8_1:86871873-86871892 Msa1222620:CDS 40.0%
TTAGCTTCAGGGTTAATGGA+TGG + chr8_1:86871877-86871896 Msa1222620:CDS 40.0%
ATGGGTCTCAGTAAGAGATT+TGG + chr8_1:86871913-86871932 Msa1222620:CDS 40.0%
!!! TATATTTTGAAGTCGAGCGG+TGG - chr8_1:86871940-86871959 None:intergenic 40.0%
ATTGAGAATATCCGTAGGGT+TGG + chr8_1:86872072-86872091 Msa1222620:CDS 40.0%
TTGAGAATATCCGTAGGGTT+GGG + chr8_1:86872073-86872092 Msa1222620:CDS 40.0%
!! TTTTTGATGACCCAACCCTA+CGG - chr8_1:86872086-86872105 None:intergenic 40.0%
TGCAATCAAATATGCACCAC+TGG - chr8_1:86872238-86872257 None:intergenic 40.0%
GGTGCATATTTGATTGCAAC+TGG + chr8_1:86872240-86872259 Msa1222620:CDS 40.0%
TATTTGATTGCAACTGGAGC+AGG + chr8_1:86872246-86872265 Msa1222620:CDS 40.0%
ATTGTTCATTGCTGCCTTAC+CGG - chr8_1:86872559-86872578 None:intergenic 40.0%
GTAAGGCAGCAATGAACAAT+AGG + chr8_1:86872559-86872578 Msa1222620:CDS 40.0%
AAGACTCGTGTTGAATTGTG+GGG - chr8_1:86872766-86872785 None:intergenic 40.0%
! AAGTTTCTCAGAAAGCATGC+GGG - chr8_1:86872809-86872828 None:intergenic 40.0%
!! CACGGTTAAGAATTTTGGGA+TGG - chr8_1:86872842-86872861 None:intergenic 40.0%
CGTGTAAGTATGAGACTACA+TGG - chr8_1:86872899-86872918 None:intergenic 40.0%
GAATCATATCGGAATGACAG+GGG - chr8_1:86872931-86872950 None:intergenic 40.0%
CGAATCATATCGGAATGACA+GGG - chr8_1:86872932-86872951 None:intergenic 40.0%
CCTGTCATTCCGATATGATT+CGG + chr8_1:86872930-86872949 Msa1222620:intron 40.0%
CGGGATAGTGTAACAACTAA+AGG - chr8_1:86873040-86873059 None:intergenic 40.0%
!! TGTTACACTATCCCGCTTTT+AGG + chr8_1:86873045-86873064 Msa1222620:intron 40.0%
TAGTAGTCAATCTCGGATAG+CGG - chr8_1:86873086-86873105 None:intergenic 40.0%
! GGTTAGTAGCATTGGACAAA+AGG + chr8_1:86873522-86873541 Msa1222620:intron 40.0%
TGGACAAAAGGACACACATT+AGG + chr8_1:86873534-86873553 Msa1222620:intron 40.0%
GTCCTCCTTGATGCATATTT+CGG + chr8_1:86873878-86873897 Msa1222620:intron 40.0%
TTCCGAAATATGCATCAAGG+AGG - chr8_1:86873883-86873902 None:intergenic 40.0%
!! CGGAGGGAGTATCATAATAA+TGG - chr8_1:86874006-86874025 None:intergenic 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr8_1:86874138-86874157 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr8_1:86874137-86874156 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr8_1:86874137-86874156 Msa1222620:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr8_1:86874138-86874157 Msa1222620:intron 40.0%
CACAAATTTACTACTCCCTC+CGG - chr8_1:86874156-86874175 None:intergenic 40.0%
!! TTTGTTATTGGTCTCCTTGC+CGG + chr8_1:86874194-86874213 Msa1222620:intron 40.0%
TCAGAAGTCTTCAACAAGAC+CGG - chr8_1:86874216-86874235 None:intergenic 40.0%
CTTGTTGAAGACTTCTGACA+TGG + chr8_1:86874218-86874237 Msa1222620:intron 40.0%
GTCCTTTAACAAGACGAACA+AGG - chr8_1:86874275-86874294 None:intergenic 40.0%
ATGCAACTAAGCTGCAAAAG+TGG - chr8_1:86874297-86874316 None:intergenic 40.0%
TCAAATAGAGTAGAGCCTTG+TGG + chr8_1:86874684-86874703 Msa1222620:intron 40.0%
!! AGAAAATAGTTGGTGAGACG+AGG + chr8_1:86874780-86874799 Msa1222620:intron 40.0%
! AGGTTATATTTTGCTACGCC+TGG + chr8_1:86874800-86874819 Msa1222620:intron 40.0%
! TATGGTGTTAAGAGAGGTTG+TGG + chr8_1:86874862-86874881 Msa1222620:intron 40.0%
!! GATGTATTTCTGTTGGCTTC+CGG + chr8_1:86875180-86875199 Msa1222620:intron 40.0%
TGTATGCTTTCAAAGGACTG+TGG + chr8_1:86875272-86875291 Msa1222620:CDS 40.0%
TAGACCAAGCATTACAGTCA+GGG - chr8_1:86875307-86875326 None:intergenic 40.0%
TTAGACCAAGCATTACAGTC+AGG - chr8_1:86875308-86875327 None:intergenic 40.0%
CTTCAATTGCAAATCTTGCG+AGG + chr8_1:86875346-86875365 Msa1222620:CDS 40.0%
TGAAAAGCCTTAGGACTGAT+TGG + chr8_1:86875378-86875397 Msa1222620:CDS 40.0%
TGCATTCAGGAATAACAGGA+GGG + chr8_1:86875446-86875465 Msa1222620:exon 40.0%
!!! GGCCATTTGGTTTTATATGC+TGG + chr8_1:86875538-86875557 Msa1222620:three_prime_UTR 40.0%
TAACAGAAGGGAAACCAGTT+TGG - chr8_1:86875681-86875700 None:intergenic 40.0%
! CAAGAGCTTGCTTTAACAGA+AGG - chr8_1:86875694-86875713 None:intergenic 40.0%
CTTCTGTTAAAGCAAGCTCT+TGG + chr8_1:86875692-86875711 Msa1222620:three_prime_UTR 40.0%
! CTTTAAGGGAAGCCTAAAAG+TGG - chr8_1:86875752-86875771 None:intergenic 40.0%
GTGTCAAGAGCTTTGCTTTA+AGG - chr8_1:86875767-86875786 None:intergenic 40.0%
GAGGGGTTTGTGAATTTGAG+GGG - chr8_1:86871020-86871039 None:intergenic 45.0%
TGGTGTGCAGTGGAATTTGA+GGG - chr8_1:86871038-86871057 None:intergenic 45.0%
ATGGTGTGCAGTGGAATTTG+AGG - chr8_1:86871039-86871058 None:intergenic 45.0%
AAACGGTCCACAATCGAAGA+TGG - chr8_1:86871058-86871077 None:intergenic 45.0%
TCCACTTCTACTCCAGGTAA+AGG + chr8_1:86871124-86871143 Msa1222620:CDS 45.0%
ACCTTTACCTGGAGTAGAAG+TGG - chr8_1:86871128-86871147 None:intergenic 45.0%
CGGAACGAAATCGAAATCTC+CGG - chr8_1:86871170-86871189 None:intergenic 45.0%
! GATCAAGACTCTGTTAGCCT+CGG + chr8_1:86871219-86871238 Msa1222620:CDS 45.0%
AACCTCTACGATCTCTTCTC+CGG + chr8_1:86871585-86871604 Msa1222620:CDS 45.0%
CGAATGGGAACATAAGACAG+TGG + chr8_1:86871669-86871688 Msa1222620:CDS 45.0%
! GTTTGTGGAGCCATCGATTA+TGG + chr8_1:86872024-86872043 Msa1222620:CDS 45.0%
TCCAGGAGGGAATGTATTGT+TGG + chr8_1:86872137-86872156 Msa1222620:CDS 45.0%
TTGATGCGCTCTTCTTCATG+TGG - chr8_1:86872432-86872451 None:intergenic 45.0%
CTTTGTAGACAAGGTAGCGA+TGG + chr8_1:86872479-86872498 Msa1222620:CDS 45.0%
AGGTTGAAGAGATTGCCCAA+GGG + chr8_1:86872523-86872542 Msa1222620:CDS 45.0%
GGCAGCAATGAACAATAGGT+TGG + chr8_1:86872563-86872582 Msa1222620:CDS 45.0%
!! AATAGGTTGGTTGATGCGCT+AGG + chr8_1:86872576-86872595 Msa1222620:CDS 45.0%
TCTCATACTTACACGACCTC+AGG + chr8_1:86872904-86872923 Msa1222620:intron 45.0%
CCGAATCATATCGGAATGAC+AGG - chr8_1:86872933-86872952 None:intergenic 45.0%
! TCGGTTCGTCTAAAAGCTGT+TGG + chr8_1:86872949-86872968 Msa1222620:intron 45.0%
CGGTTCGTCTAAAAGCTGTT+GGG + chr8_1:86872950-86872969 Msa1222620:intron 45.0%
GACTTGTGCATGACAATGAG+CGG - chr8_1:86872978-86872997 None:intergenic 45.0%
ACTAAAGGCTGACAAGTACG+AGG - chr8_1:86873025-86873044 None:intergenic 45.0%
!!! CACTATCCCGCTTTTAGGTT+TGG + chr8_1:86873050-86873069 Msa1222620:intron 45.0%
AGTGTTAAGAGAGGTTGTGG+TGG + chr8_1:86873496-86873515 Msa1222620:intron 45.0%
! GAGCAACTACGGACTACATT+TGG - chr8_1:86873909-86873928 None:intergenic 45.0%
ACTCGCAAGCAACTATGAAG+CGG - chr8_1:86874368-86874387 None:intergenic 45.0%
!! GTACTCAAGTTGAGCATCAG+AGG + chr8_1:86874497-86874516 Msa1222620:intron 45.0%
CAACTGATGTCGCAAACCTA+TGG - chr8_1:86874588-86874607 None:intergenic 45.0%
CATAGGTTTGCGACATCAGT+TGG + chr8_1:86874586-86874605 Msa1222620:intron 45.0%
! AAGGAGTACATGTAGCCACA+AGG - chr8_1:86874702-86874721 None:intergenic 45.0%
ACTTCATTCCCCTGTGCTTA+AGG + chr8_1:86875050-86875069 Msa1222620:intron 45.0%
AACCTCTACCTTAAGCACAG+GGG - chr8_1:86875061-86875080 None:intergenic 45.0%
GAACCTCTACCTTAAGCACA+GGG - chr8_1:86875062-86875081 None:intergenic 45.0%
AGAACCTCTACCTTAAGCAC+AGG - chr8_1:86875063-86875082 None:intergenic 45.0%
AATTGCAAATCTTGCGAGGC+TGG + chr8_1:86875350-86875369 Msa1222620:CDS 45.0%
CTGGCTTACTGAAAAGCCTT+AGG + chr8_1:86875369-86875388 Msa1222620:CDS 45.0%
CCTTCTTCCAATCAGTCCTA+AGG - chr8_1:86875388-86875407 None:intergenic 45.0%
CCTTAGGACTGATTGGAAGA+AGG + chr8_1:86875385-86875404 Msa1222620:CDS 45.0%
GCTGTGCATTCAGGAATAAC+AGG + chr8_1:86875442-86875461 Msa1222620:exon 45.0%
GTGCATTCAGGAATAACAGG+AGG + chr8_1:86875445-86875464 Msa1222620:exon 45.0%
TTCAGGAATAACAGGAGGGA+TGG + chr8_1:86875450-86875469 Msa1222620:exon 45.0%
GAGTCAAACTGCACTCAAAC+AGG - chr8_1:86875588-86875607 None:intergenic 45.0%
! TTTAGCTCATAAGACCCGTG+CGG - chr8_1:86875860-86875879 None:intergenic 45.0%
! GTGTGAATGGTTTGCGATGG+AGG - chr8_1:86870966-86870985 None:intergenic 50.0%
GGGGTTTCCGTAAGATGAAG+AGG - chr8_1:86871001-86871020 None:intergenic 50.0%
GGTGTGCAGTGGAATTTGAG+GGG - chr8_1:86871037-86871056 None:intergenic 50.0%
CAATCGAAGATGGTGTGCAG+TGG - chr8_1:86871048-86871067 None:intergenic 50.0%
CTGCACACCATCTTCGATTG+TGG + chr8_1:86871048-86871067 Msa1222620:CDS 50.0%
TTCGATTTCGTTCCGCTCTC+TGG + chr8_1:86871175-86871194 Msa1222620:CDS 50.0%
AGACACGCGAGGATCATATG+CGG - chr8_1:86871365-86871384 None:intergenic 50.0%
ACAAATAGAGCAGACACGCG+AGG - chr8_1:86871376-86871395 None:intergenic 50.0%
!!! GGGGTTTTGAGAGTGGAGTT+TGG + chr8_1:86871506-86871525 Msa1222620:CDS 50.0%
GAAGAGATCGTAGAGGTTGG+AGG - chr8_1:86871583-86871602 None:intergenic 50.0%
GGAGAAGAGATCGTAGAGGT+TGG - chr8_1:86871586-86871605 None:intergenic 50.0%
! TGTGGAGCCATCGATTATGG+AGG + chr8_1:86872027-86872046 Msa1222620:CDS 50.0%
! ATCCTACGGATTGACAGTCC+AGG + chr8_1:86872120-86872139 Msa1222620:CDS 50.0%
! TACGGATTGACAGTCCAGGA+GGG + chr8_1:86872124-86872143 Msa1222620:CDS 50.0%
GCCAACAATACATTCCCTCC+TGG - chr8_1:86872141-86872160 None:intergenic 50.0%
ACTGGCTGCCTCATCTGATA+AGG - chr8_1:86872220-86872239 None:intergenic 50.0%
TTATCAGATGAGGCAGCCAG+TGG + chr8_1:86872219-86872238 Msa1222620:CDS 50.0%
GAGGTTGAAGAGATTGCCCA+AGG + chr8_1:86872522-86872541 Msa1222620:CDS 50.0%
TAGCGGCCAAACCTAAAAGC+GGG - chr8_1:86873059-86873078 None:intergenic 50.0%
GTAGCGGCCAAACCTAAAAG+CGG - chr8_1:86873060-86873079 None:intergenic 50.0%
! TAAGAGAGGTTGTGGTGGAG+TGG + chr8_1:86873501-86873520 Msa1222620:intron 50.0%
GGTGGAGTGGTTAGTAGCAT+TGG + chr8_1:86873514-86873533 Msa1222620:intron 50.0%
AGTCTTCAACAAGACCGGCA+AGG - chr8_1:86874211-86874230 None:intergenic 50.0%
CTCGCAAGCAACTATGAAGC+GGG - chr8_1:86874367-86874386 None:intergenic 50.0%
AGTTGAGCATCAGAGGTTGC+AGG + chr8_1:86874504-86874523 Msa1222620:intron 50.0%
GCTGCGTTCGATCATTAACC+AGG - chr8_1:86874821-86874840 None:intergenic 50.0%
! CGCAGCTTTGATACCACTGT+TGG + chr8_1:86874835-86874854 Msa1222620:intron 50.0%
TTCCCCTGTGCTTAAGGTAG+AGG + chr8_1:86875056-86875075 Msa1222620:intron 50.0%
!! TTCTGTTGGCTTCCGGTTTC+TGG + chr8_1:86875187-86875206 Msa1222620:intron 50.0%
GCATACAACATCCAGACTGC+AGG - chr8_1:86875259-86875278 None:intergenic 50.0%
CCAAGCATTACAGTCAGGGT+TGG - chr8_1:86875303-86875322 None:intergenic 50.0%
CCAACCCTGACTGTAATGCT+TGG + chr8_1:86875300-86875319 Msa1222620:CDS 50.0%
CCTGAATGCACAGCAACCAA+TGG - chr8_1:86875436-86875455 None:intergenic 50.0%
! CCATTGGTTGCTGTGCATTC+AGG + chr8_1:86875433-86875452 Msa1222620:CDS 50.0%
GGAATAACAGGAGGGATGGT+TGG + chr8_1:86875454-86875473 Msa1222620:exon 50.0%
CTCCGGAGAAGAGATCGTAG+AGG - chr8_1:86871590-86871609 None:intergenic 55.0%
CTCCTGGACTGTCAATCCGT+AGG - chr8_1:86872125-86872144 None:intergenic 55.0%
! CTACGGATTGACAGTCCAGG+AGG + chr8_1:86872123-86872142 Msa1222620:CDS 55.0%
AGATTGCCCAAGGGCGACTT+TGG + chr8_1:86872532-86872551 Msa1222620:CDS 55.0%
! AGGTTGGTTGATGCGCTAGG+TGG + chr8_1:86872579-86872598 Msa1222620:CDS 55.0%
! TCTCAGAAAGCATGCGGGTG+AGG - chr8_1:86872804-86872823 None:intergenic 55.0%
CAAGTACGAGGAGTGGTCGT+CGG - chr8_1:86873013-86873032 None:intergenic 55.0%
AGGCTGACAAGTACGAGGAG+TGG - chr8_1:86873020-86873039 None:intergenic 55.0%
TACTACTAGACTGCGCCGCA+CGG + chr8_1:86875842-86875861 Msa1222620:three_prime_UTR 55.0%
ACCATGTTCGACACGCTCCG+AGG - chr8_1:86871239-86871258 None:intergenic 60.0%
!! ACCAGTTGGCACCGACTCTC+AGG + chr8_1:86871300-86871319 Msa1222620:CDS 60.0%
!! ACCTGAGAGTCGGTGCCAAC+TGG - chr8_1:86871304-86871323 None:intergenic 60.0%
ACCGGTCCAAAGTCGCCCTT+GGG - chr8_1:86872541-86872560 None:intergenic 60.0%
TACCGGTCCAAAGTCGCCCT+TGG - chr8_1:86872542-86872561 None:intergenic 60.0%
AGGGCGACTTTGGACCGGTA+AGG + chr8_1:86872542-86872561 Msa1222620:CDS 60.0%
TCGGAATGACAGGGGTCCTG+AGG - chr8_1:86872923-86872942 None:intergenic 60.0%
! TCTCGGATAGCGGTGCGTAG+CGG - chr8_1:86873076-86873095 None:intergenic 60.0%
ACTACTAGACTGCGCCGCAC+GGG + chr8_1:86875843-86875862 Msa1222620:three_prime_UTR 60.0%
GCCTCGGAGCGTGTCGAACA+TGG + chr8_1:86871235-86871254 Msa1222620:CDS 65.0%
GCCCAAGGGCGACTTTGGAC+CGG + chr8_1:86872537-86872556 Msa1222620:CDS 65.0%
GGAGTGGTCGTCGGTGCACA+AGG - chr8_1:86873004-86873023 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 86870920 86875977 86870920 ID=Msa1222620;Name=Msa1222620
chr8_1 mRNA 86870920 86875977 86870920 ID=Msa1222620-mRNA-1;Parent=Msa1222620;Name=Msa1222620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0.5|1|1|1|2|517|648
chr8_1 exon 86870920 86872668 86870920 ID=Msa1222620-mRNA-1:exon:31269;Parent=Msa1222620-mRNA-1
chr8_1 exon 86875263 86875977 86875263 ID=Msa1222620-mRNA-1:exon:31270;Parent=Msa1222620-mRNA-1
chr8_1 CDS 86870920 86872668 86870920 ID=Msa1222620-mRNA-1:cds;Parent=Msa1222620-mRNA-1
chr8_1 CDS 86875263 86875460 86875263 ID=Msa1222620-mRNA-1:cds;Parent=Msa1222620-mRNA-1
chr8_1 three_prime_UTR 86875461 86875977 86875461 ID=Msa1222620-mRNA-1:three_prime_utr;Parent=Msa1222620-mRNA-1
Gene Sequence

>Msa1222620

ATGACAATCCTCCGTAACATGTACAGAAAAATATCACGATCATCCTCCATCGCAAACCATTCACACTTTATTTCTCATCCTCTTCATCTTACGGAAACCCCTCAAATTCACAAACCCCTCAAATTCCACTGCACACCATCTTCGATTGTGGACCGTTTTAAATCTTTTCGACCCATTCACAGACCATTCACATTCTACTTTTCATCCACTTCTACTCCAGGTAAAGGTAACAGTGTTGATTATTCGACCGGAGATTTCGATTTCGTTCCGCTCTCTGGTTTTAAGAAATATATGGTGAAGATCAAGACTCTGTTAGCCTCGGAGCGTGTCGAACATGGTAGTGTTTTGAGAATCAATTTGGAAGGAAAGTTTTCAGATGGACCAGTTGGCACCGACTCTCAGGTATTGTCTTTACCTCAACTAAGCGAAAATCTTATGAAAGCCGCATATGATCCTCGCGTGTCTGCTCTATTTGTTTATATAGATGCTTTTGATTGTGGTTGGGGCAAAGCCGATGAAATTAGAAGACAGATATTCAATTTCAAGAAATCTGGTAAAAAAGTTATTGCTTTTATGCCTACATTTTGGGGTTTTGAGAGTGGAGTTTGGTATCAAAATAAATCATATTACATAGCTAGTGAATGTCATGAAATCTATGCACCTCCAACCTCTACGATCTCTTCTCCGGAGACAACTACTCTTACTAAGATTACTAAGAGATCTTTGAAAAAGGATTACACCAATCTTATCGAATGGGAACATAAGACAGTGGGCAAATATAAAATTGCAGGCTTAAATTCAGATGAAGGATGGGAAATGATGAAGGCAATTGAGGATGATATAAGATCTAATTGGCTTGATATGGTTTCTTGTTCAAGGAAAATATCAAAAAAGGACCTTCTAACTTTTTTCGGTAGTGAGGATTTTCATGAAACAAAAAATTGGATAGATTGTGGATTAGCTTCAGGGTTAATGGATGGTGACAAGATTATTATGGGTCTCAGTAAGAGATTTGGACCACCGCTCGACTTCAAAATATATTCACAAGTTAAAAAGTGCACTGTTGGTATATCAAATAGTAGGGAAAATATCGGTATTATTAGAGTTTGTGGAGCCATCGATTATGGAGGTGATATAATGGTTCATGATTTGATTGAGAATATCCGTAGGGTTGGGTCATCAAAAAGTTTGAAGGCTATAATCCTACGGATTGACAGTCCAGGAGGGAATGTATTGTTGGCTGATCAATTATGGAGAGAAATCAACATTCTTGCATCTAAGATACCGGTCATTTCTTCCTTATCAGATGAGGCAGCCAGTGGTGCATATTTGATTGCAACTGGAGCAGGAACAATTGTAGCTGAGAAACTTACTATTATAGGTTCAATTGGAGTGAGACTGTCACGTGCAAACATTAAGAAAATATATGAATATTTTGGTTTTAAGAAAGAGGTTCTTTCTAAAGGTAAATATGCAGAACTATTTGAGAATGATCATCGGCTACTTATGCCACATGAAGAAGAGCGCATCAAAAATGAGTTACAAGAAATTTACAAACACTTTGTAGACAAGGTAGCGATGGCCAGATCATTAAGTGTAGATGAGGTTGAAGAGATTGCCCAAGGGCGACTTTGGACCGGTAAGGCAGCAATGAACAATAGGTTGGTTGATGCGCTAGGTGGATTATCACGTGCTGTTGCTATAGCCAAATTGAAGGCTAATATACCTCAAAATAGGCCTATTAATCTGTCTGGATGTTGTATGCTTTCAAAGGACTGTGGTCATACCAACCCTGACTGTAATGCTTGGTCTAATGATCCAAATGTTTTGTGCTTCAATTGCAAATCTTGCGAGGCTGGCTTACTGAAAAGCCTTAGGACTGATTGGAAGAAGGTAGCTGTTGTCAACATTAGTGTACTCCATTGGTTGCTGTGCATTCAGGAATAA
Protein sequence

>Msa1222620

MTILRNMYRKISRSSSIANHSHFISHPLHLTETPQIHKPLKFHCTPSSIVDRFKSFRPIHRPFTFYFSSTSTPGKGNSVDYSTGDFDFVPLSGFKKYMVKIKTLLASERVEHGSVLRINLEGKFSDGPVGTDSQVLSLPQLSENLMKAAYDPRVSALFVYIDAFDCGWGKADEIRRQIFNFKKSGKKVIAFMPTFWGFESGVWYQNKSYYIASECHEIYAPPTSTISSPETTTLTKITKRSLKKDYTNLIEWEHKTVGKYKIAGLNSDEGWEMMKAIEDDIRSNWLDMVSCSRKISKKDLLTFFGSEDFHETKNWIDCGLASGLMDGDKIIMGLSKRFGPPLDFKIYSQVKKCTVGISNSRENIGIIRVCGAIDYGGDIMVHDLIENIRRVGSSKSLKAIILRIDSPGGNVLLADQLWREINILASKIPVISSLSDEAASGAYLIATGAGTIVAEKLTIIGSIGVRLSRANIKKIYEYFGFKKEVLSKGKYAELFENDHRLLMPHEEERIKNELQEIYKHFVDKVAMARSLSVDEVEEIAQGRLWTGKAAMNNRLVDALGGLSRAVAIAKLKANIPQNRPINLSGCCMLSKDCGHTNPDCNAWSNDPNVLCFNCKSCEAGLLKSLRTDWKKVAVVNISVLHWLLCIQE*