AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171740 MtrunA17_Chr1g0189841 99.099 222 2 0 1 222 1 222 7.20e-161 443
Msa0171740 MtrunA17_Chr4g0007051 80.180 222 43 1 1 222 1 221 1.01e-129 364
Msa0171740 MtrunA17_Chr4g0007031 80.180 222 43 1 1 222 1 221 1.58e-129 364
Msa0171740 MtrunA17_Chr5g0419971 80.180 222 43 1 1 222 1 221 1.58e-129 364
Msa0171740 MtrunA17_Chr5g0419981 80.180 222 43 1 1 222 1 221 1.58e-129 364
Msa0171740 MtrunA17_Chr4g0007041 79.730 222 44 1 1 222 1 221 9.83e-129 362
Msa0171740 MtrunA17_Chr2g0285871 78.829 222 46 1 1 222 1 221 1.96e-128 361
Msa0171740 MtrunA17_Chr6g0449751 80.909 220 39 3 3 222 4 220 5.84e-125 352
Msa0171740 MtrunA17_Chr6g0449731 82.407 216 35 3 6 221 7 219 1.27e-124 351
Msa0171740 MtrunA17_Chr6g0449771 81.567 217 37 3 6 222 7 220 7.76e-124 349
Msa0171740 MtrunA17_Chr6g0449761 81.860 215 36 3 4 218 5 216 3.45e-123 349
Msa0171740 MtrunA17_Chr6g0449781 64.253 221 75 4 2 222 3 219 3.12e-92 269
Msa0171740 MtrunA17_Chr6g0449791 63.942 208 73 2 2 209 3 208 6.38e-90 263
Msa0171740 MtrunA17_Chr1g0156131 59.633 218 78 3 1 217 1 209 3.87e-84 248
Msa0171740 MtrunA17_Chr2g0292831 64.500 200 64 4 19 217 19 212 1.35e-83 247
Msa0171740 MtrunA17_Chr2g0292901 63.184 201 66 5 19 217 19 213 1.45e-80 239
Msa0171740 MtrunA17_Chr2g0292861 65.896 173 56 3 47 217 7 178 1.26e-76 228
Msa0171740 MtrunA17_Chr2g0292841 65.896 173 56 3 47 217 7 178 3.21e-75 225
Msa0171740 MtrunA17_Chr1g0193671 46.948 213 107 3 5 216 6 213 1.12e-61 192
Msa0171740 MtrunA17_Chr1g0193421 47.500 200 99 3 19 217 21 215 1.29e-54 174
Msa0171740 MtrunA17_Chr7g0271211 48.731 197 95 3 22 217 20 211 1.76e-53 171
Msa0171740 MtrunA17_Chr5g0414971 47.980 198 96 4 22 217 27 219 3.01e-53 170
Msa0171740 MtrunA17_Chr2g0292911 68.067 119 36 2 47 164 7 124 9.17e-52 164
Msa0171740 MtrunA17_Chr1g0210761 44.279 201 97 6 19 217 20 207 4.48e-47 154
Msa0171740 MtrunA17_Chr1g0178711 36.937 222 124 4 1 217 11 221 6.21e-42 142
Msa0171740 MtrunA17_Chr2g0300561 41.905 210 106 5 6 214 9 203 8.94e-41 138
Msa0171740 MtrunA17_Chr8g0344021 40.826 218 118 5 1 217 1 208 1.17e-39 135
Msa0171740 MtrunA17_Chr3g0084531 38.389 211 122 3 7 217 3 205 5.97e-38 131
Msa0171740 MtrunA17_Chr2g0300581 39.151 212 113 5 5 215 8 204 2.95e-37 129
Msa0171740 MtrunA17_Chr2g0300591 39.336 211 112 5 5 214 8 203 3.86e-37 129
Msa0171740 MtrunA17_Chr8g0343911 39.524 210 115 5 7 215 4 202 7.12e-37 128
Msa0171740 MtrunA17_Chr2g0297231 37.915 211 123 3 7 217 3 205 2.85e-36 126
Msa0171740 MtrunA17_Chr8g0343934 38.144 194 114 2 7 200 3 190 8.22e-36 125
Msa0171740 MtrunA17_Chr8g0335851 41.111 180 102 2 22 201 26 201 1.62e-35 125
Msa0171740 MtrunA17_Chr2g0286171 36.697 218 127 5 1 217 1 208 6.02e-35 123
Msa0171740 MtrunA17_Chr2g0313961 37.441 211 124 3 7 217 3 205 1.08e-34 122
Msa0171740 MtrunA17_Chr8g0343954 37.629 194 113 3 24 217 20 205 2.15e-34 122
Msa0171740 MtrunA17_Chr3g0084521 38.660 194 111 3 24 217 19 204 2.95e-34 121
Msa0171740 MtrunA17_Chr2g0297241 38.235 204 117 3 7 207 3 200 3.30e-34 121
Msa0171740 MtrunA17_Chr3g0084511 38.144 194 112 3 24 217 19 204 3.47e-34 121
Msa0171740 MtrunA17_Chr2g0302171 39.062 192 109 3 26 217 22 205 4.76e-33 118
Msa0171740 MtrunA17_Chr2g0301611 35.545 211 128 3 7 217 3 205 1.37e-32 117
Msa0171740 MtrunA17_Chr4g0003361 37.696 191 110 4 27 217 20 201 2.57e-32 116
Msa0171740 MtrunA17_Chr8g0343961 35.122 205 121 4 13 217 13 205 8.21e-32 115
Msa0171740 MtrunA17_Chr8g0344041 34.884 215 131 4 4 217 3 209 1.65e-31 114
Msa0171740 MtrunA17_Chr5g0411961 35.122 205 119 3 3 207 7 197 1.83e-31 114
Msa0171740 MtrunA17_Chr3g0130241 35.859 198 119 2 4 201 71 260 4.38e-31 115
Msa0171740 MtrunA17_Chr3g0115141 39.062 192 103 5 28 217 27 206 5.02e-31 113
Msa0171740 MtrunA17_Chr2g0302541 37.824 193 110 4 26 217 22 205 5.44e-31 113
Msa0171740 MtrunA17_Chr8g0344051 42.458 179 92 5 1 177 1 170 2.91e-30 111
Msa0171740 MtrunA17_Chr4g0012651 38.021 192 111 3 26 217 22 205 3.27e-30 111
Msa0171740 MtrunA17_Chr7g0217811 37.500 192 112 3 26 217 22 205 3.45e-30 111
Msa0171740 MtrunA17_Chr8g0344031 34.101 217 133 4 1 217 1 207 1.05e-28 107
Msa0171740 MtrunA17_Chr8g0343921 34.742 213 126 6 6 217 3 203 2.39e-28 106
Msa0171740 MtrunA17_Chr2g0321601 36.139 202 109 6 17 217 21 203 4.94e-28 105
Msa0171740 MtrunA17_Chr2g0321581 41.912 136 73 3 83 217 74 204 8.47e-27 102
Msa0171740 MtrunA17_Chr4g0026201 40.278 144 80 3 75 217 67 205 9.05e-27 102
Msa0171740 MtrunA17_Chr4g0026191 40.278 144 80 3 75 217 67 205 1.61e-26 101
Msa0171740 MtrunA17_Chr2g0321591 41.176 136 74 3 83 217 74 204 2.50e-26 100
Msa0171740 MtrunA17_Chr3g0084551 32.178 202 123 5 7 207 3 191 9.31e-22 89.7
Msa0171740 MtrunA17_Chr2g0292881 67.241 58 18 1 94 151 1 57 6.72e-21 82.4
Msa0171740 MtrunA17_Chr3g0084501 40.952 105 60 1 7 111 3 105 9.26e-14 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171740 AT3G05950.1 69.058 223 64 3 2 220 3 224 1.70e-101 293
Msa0171740 AT5G39130.1 70.476 210 60 2 9 217 11 219 2.34e-101 293
Msa0171740 AT5G39190.1 70.000 210 61 2 9 217 11 219 8.91e-101 291
Msa0171740 AT5G39160.1 70.000 210 61 2 9 217 11 219 9.62e-101 291
Msa0171740 AT5G39110.1 67.453 212 68 1 7 217 9 220 1.61e-98 286
Msa0171740 AT5G39150.1 66.667 213 70 1 6 217 7 219 3.43e-98 285
Msa0171740 AT5G39180.1 66.667 213 70 1 6 217 7 219 5.37e-98 285
Msa0171740 AT5G39120.1 68.966 203 62 1 16 217 17 219 2.11e-97 283
Msa0171740 AT5G39160.3 67.619 210 62 2 9 217 11 215 8.03e-96 279
Msa0171740 AT4G14630.1 64.186 215 76 1 4 217 8 222 3.31e-93 272
Msa0171740 AT3G04200.1 65.403 211 71 2 8 217 13 222 4.91e-89 262
Msa0171740 AT5G38940.1 67.005 197 63 2 22 217 26 221 8.40e-88 259
Msa0171740 AT5G38940.2 67.005 197 63 2 22 217 50 245 1.36e-87 259
Msa0171740 AT5G38930.1 67.839 199 62 2 20 217 24 221 1.81e-87 258
Msa0171740 AT5G38960.1 65.500 200 66 2 20 217 24 222 1.75e-86 255
Msa0171740 AT5G39190.2 62.201 209 57 1 9 217 11 197 4.93e-84 248
Msa0171740 AT5G39160.2 61.722 209 58 1 9 217 11 197 1.06e-83 247
Msa0171740 AT5G38910.1 60.465 215 83 2 4 217 6 219 7.09e-83 246
Msa0171740 AT3G04170.1 58.768 211 82 3 8 217 12 218 7.78e-81 241
Msa0171740 AT3G04190.1 60.294 204 79 2 15 217 19 221 6.06e-80 239
Msa0171740 AT3G04150.1 57.273 220 89 3 2 217 3 221 9.69e-80 238
Msa0171740 AT3G04150.2 54.741 232 89 3 2 217 3 234 5.48e-79 237
Msa0171740 AT3G04180.1 57.843 204 84 2 15 217 19 221 3.98e-76 229
Msa0171740 AT3G62020.1 49.074 216 102 5 4 217 6 215 1.80e-59 186
Msa0171740 AT5G38910.2 48.837 215 71 2 4 217 6 182 3.55e-59 184
Msa0171740 AT1G02335.1 46.009 213 109 3 6 217 8 215 3.69e-59 186
Msa0171740 AT1G09560.1 48.276 203 99 3 17 218 19 216 2.17e-58 184
Msa0171740 AT1G18970.1 48.500 200 95 4 19 217 26 218 1.20e-56 179
Msa0171740 AT1G18980.1 46.977 215 103 5 4 217 14 218 5.98e-56 177
Msa0171740 AT3G05930.1 44.444 216 106 4 4 217 12 215 1.22e-52 169
Msa0171740 AT3G62020.2 49.724 181 86 3 39 217 9 186 2.71e-51 165
Msa0171740 AT5G26700.1 46.114 193 95 4 26 217 25 209 2.74e-51 166
Msa0171740 AT1G10460.1 43.500 200 106 5 22 217 19 215 1.01e-49 162
Msa0171740 AT3G10080.1 41.176 204 108 4 19 217 23 219 1.70e-45 151
Msa0171740 AT3G10080.2 41.176 204 108 4 19 217 94 290 9.50e-45 151
Msa0171740 AT5G20630.1 42.718 206 104 6 5 209 8 200 3.60e-42 142
Msa0171740 AT1G74820.1 41.237 194 106 4 25 217 39 225 2.37e-39 135
Msa0171740 AT1G72610.1 44.318 176 92 3 26 200 19 189 1.98e-38 132
Msa0171740 AT5G61750.1 42.246 187 101 4 4 189 3 183 1.92e-37 130
Msa0171740 AT5G38950.1 61.972 71 27 0 146 216 2 72 2.34e-22 88.2

Find 61 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTCATCGTTGCCTTAT+TGG 0.169384 1_4:+56469995 Msa0171740:CDS
GTGAGAACTTCCAAAGAAAT+TGG 0.253491 1_4:-56470825 None:intergenic
ATCTAAACCACCAATTTCTT+TGG 0.270284 1_4:+56470815 Msa0171740:CDS
TACTGAGATTCTTGTAGTTT+TGG 0.280584 1_4:+56470587 Msa0171740:CDS
CAAATATATACCACCAGTTT+TGG 0.298065 1_4:-56470090 None:intergenic
ACTATCTTCAAAAGCAATTC+TGG 0.307062 1_4:+56470880 Msa0171740:CDS
CAACACACTTGGTATATCTT+TGG 0.313811 1_4:+56470509 Msa0171740:CDS
TGAGGAGGATTTAGACCTTT+TGG 0.315163 1_4:-56470549 None:intergenic
GGGGAGGCTATTGCCATTGC+TGG 0.317939 1_4:+56470741 Msa0171740:CDS
TTCCAATTGAACGTTGGTTA+TGG 0.322079 1_4:+56470720 Msa0171740:CDS
TGGTAATCACTCCAGGGTTT+TGG 0.338241 1_4:-56470773 None:intergenic
GTGGCGGTTAATGAAATATT+AGG 0.343882 1_4:+56470483 Msa0171740:CDS
ACCATAGCAAATGCTGTGTT+TGG 0.345841 1_4:+56470792 Msa0171740:CDS
TCCAATTGAACGTTGGTTAT+GGG 0.359751 1_4:+56470721 Msa0171740:CDS
TTTATCCACTTGAAAAGCTT+TGG 0.360291 1_4:-56470847 None:intergenic
GCGGATGATTTCTTCTTTCA+AGG 0.361596 1_4:+56470411 Msa0171740:CDS
AGATGATGCTAAAGCCAATA+AGG 0.364373 1_4:-56470009 None:intergenic
TTGCAATGGGCTGGGATCAT+AGG 0.370729 1_4:-56470042 None:intergenic
GATTTCTTCTTTCAAGGATT+GGG 0.380699 1_4:+56470417 Msa0171740:CDS
TGATTTCTTCTTTCAAGGAT+TGG 0.382095 1_4:+56470416 Msa0171740:CDS
CCCCATAACCAACGTTCAAT+TGG 0.396722 1_4:-56470722 None:intergenic
ATCGCCTTTGTTCAATACTT+TGG 0.409827 1_4:-56470667 None:intergenic
TGGAAGTGAATGAGACCAAT+TGG 0.411740 1_4:-56470702 None:intergenic
TTCTTTCAAGGATTGGGACC+TGG 0.419003 1_4:+56470423 Msa0171740:CDS
GATGTATTTGTGTTTCCAAT+TGG 0.426726 1_4:+56470687 Msa0171740:CDS
ACAAAAGTCTTGCAATGGGC+TGG 0.433311 1_4:-56470051 None:intergenic
TAATTTCCAGTGTTCGTGAA+TGG 0.434819 1_4:+56470357 Msa0171740:intron
TCTTTCAAGGATTGGGACCT+GGG 0.451301 1_4:+56470424 Msa0171740:CDS
AATATTTCATTAACCGCCAC+TGG 0.460762 1_4:-56470480 None:intergenic
TTGGCTTTAGCATCATCTGT+TGG 0.476411 1_4:+56470014 Msa0171740:CDS
GCAATCAATGATACCAAAAC+TGG 0.479248 1_4:+56470077 Msa0171740:CDS
CAAAAGTCTTGCAATGGGCT+GGG 0.501275 1_4:-56470050 None:intergenic
ACGGTTATTGTCTTGATTCG+AGG 0.502878 1_4:-56470637 None:intergenic
CCAATTGAACGTTGGTTATG+GGG 0.522282 1_4:+56470722 Msa0171740:CDS
TCATCCGCATTTGCAAGCTT+AGG 0.527443 1_4:-56470396 None:intergenic
AGTGGATTTGAAGTATTCCC+AGG 0.530147 1_4:-56470441 None:intergenic
TTGGAAGGTACGCTTTATGT+TGG 0.530368 1_4:+56470606 Msa0171740:CDS
CAACACAAAAGTCTTGCAAT+GGG 0.530539 1_4:-56470055 None:intergenic
TTTGCTATGGTAATCACTCC+AGG 0.534925 1_4:-56470780 None:intergenic
AGAACTTCCAAAGAAATTGG+TGG 0.547357 1_4:-56470822 None:intergenic
GCAACACAAAAGTCTTGCAA+TGG 0.550725 1_4:-56470056 None:intergenic
TTGGCTACTAAGACCAGCAA+TGG 0.575368 1_4:-56470754 None:intergenic
AGATCCTAAGCTTGCAAATG+CGG 0.587730 1_4:+56470392 Msa0171740:CDS
TCCAAACACAGCATTTGCTA+TGG 0.591300 1_4:-56470793 None:intergenic
TCAATACTTTGGTGAAGAGA+CGG 0.592996 1_4:-56470656 None:intergenic
ATTCACTTCCAATTGAACGT+TGG 0.603364 1_4:+56470714 Msa0171740:CDS
ATATTAGGACTCAACACACT+TGG 0.605651 1_4:+56470498 Msa0171740:CDS
TTGCTATGGTAATCACTCCA+GGG 0.606541 1_4:-56470779 None:intergenic
ATCAATGATACCAAAACTGG+TGG 0.616290 1_4:+56470080 Msa0171740:CDS
GTACCTCGAGGGTGAGTGTG+AGG 0.618466 1_4:-56470567 None:intergenic
ATCTAAAGTGACTCCAGTGG+CGG 0.629643 1_4:+56470467 Msa0171740:CDS
ATTGAACGTTGGTTATGGGG+AGG 0.631460 1_4:+56470725 Msa0171740:CDS
CCTCGAGGGTGAGTGTGAGG+AGG 0.646431 1_4:-56470564 None:intergenic
TTCACCAAAGTATTGAACAA+AGG 0.653228 1_4:+56470663 Msa0171740:CDS
CAAGAATCTCAGTACCTCGA+GGG 0.659275 1_4:-56470578 None:intergenic
GGGAATACTTCAAATCCACT+CGG 0.669068 1_4:+56470444 Msa0171740:CDS
GGTCTTAGTAGCCAAAACCC+TGG 0.671124 1_4:+56470762 Msa0171740:CDS
GGAGTCACTTTAGATCCGAG+TGG 0.676827 1_4:-56470459 None:intergenic
CGGATCTAAAGTGACTCCAG+TGG 0.687895 1_4:+56470464 Msa0171740:CDS
ACAAGAATCTCAGTACCTCG+AGG 0.695186 1_4:-56470579 None:intergenic
CCTCCTCACACTCACCCTCG+AGG 0.708362 1_4:+56470564 Msa0171740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG + chr1_4:56470238-56470257 Msa0171740:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+GGG + chr1_4:56470238-56470257 Msa0171740:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+TGG + chr1_4:56470238-56470257 Msa0171740:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTTT+GGG + chr1_4:56470238-56470257 Msa0171740:intron 0.0%
!!! ATTTTATACACCTAAAATTA+TGG + chr1_4:56470208-56470227 Msa0171740:intron 15.0%
!!! AAATCAATTACCATAATTTT+AGG - chr1_4:56470221-56470240 None:intergenic 15.0%
!!! ATTTTATACACCTAAAATTA+TGG + chr1_4:56470208-56470227 Msa0171740:intron 15.0%
!!! AAATCAATTACCATAATTTT+AGG - chr1_4:56470221-56470240 None:intergenic 15.0%
!! AAAAAACTATAATAACATGG+AGG - chr1_4:56470144-56470163 None:intergenic 20.0%
!! CACAAAAAACTATAATAACA+TGG - chr1_4:56470147-56470166 None:intergenic 20.0%
!! AAAAAACTATAATAACATGG+AGG - chr1_4:56470144-56470163 None:intergenic 20.0%
!! CACAAAAAACTATAATAACA+TGG - chr1_4:56470147-56470166 None:intergenic 20.0%
!! AATCAAGTTTTCTTGTGATT+TGG + chr1_4:56470329-56470348 Msa0171740:intron 25.0%
!! AATCAAGTTTTCTTGTGATT+TGG + chr1_4:56470329-56470348 Msa0171740:intron 25.0%
! CAAATATATACCACCAGTTT+TGG - chr1_4:56470093-56470112 None:intergenic 30.0%
! GATTGCATATCTAAAACATG+TGG + chr1_4:56470174-56470193 Msa0171740:intron 30.0%
TGATTTCTTCTTTCAAGGAT+TGG + chr1_4:56470416-56470435 Msa0171740:CDS 30.0%
GATTTCTTCTTTCAAGGATT+GGG + chr1_4:56470417-56470436 Msa0171740:CDS 30.0%
! TACTGAGATTCTTGTAGTTT+TGG + chr1_4:56470587-56470606 Msa0171740:CDS 30.0%
!! TTCACCAAAGTATTGAACAA+AGG + chr1_4:56470663-56470682 Msa0171740:CDS 30.0%
GATGTATTTGTGTTTCCAAT+TGG + chr1_4:56470687-56470706 Msa0171740:CDS 30.0%
ATCTAAACCACCAATTTCTT+TGG + chr1_4:56470815-56470834 Msa0171740:CDS 30.0%
TTTATCCACTTGAAAAGCTT+TGG - chr1_4:56470850-56470869 None:intergenic 30.0%
ACTATCTTCAAAAGCAATTC+TGG + chr1_4:56470880-56470899 Msa0171740:CDS 30.0%
! CAAATATATACCACCAGTTT+TGG - chr1_4:56470093-56470112 None:intergenic 30.0%
! GATTGCATATCTAAAACATG+TGG + chr1_4:56470174-56470193 Msa0171740:intron 30.0%
TGATTTCTTCTTTCAAGGAT+TGG + chr1_4:56470416-56470435 Msa0171740:CDS 30.0%
GATTTCTTCTTTCAAGGATT+GGG + chr1_4:56470417-56470436 Msa0171740:CDS 30.0%
! TACTGAGATTCTTGTAGTTT+TGG + chr1_4:56470587-56470606 Msa0171740:CDS 30.0%
!! TTCACCAAAGTATTGAACAA+AGG + chr1_4:56470663-56470682 Msa0171740:CDS 30.0%
GATGTATTTGTGTTTCCAAT+TGG + chr1_4:56470687-56470706 Msa0171740:CDS 30.0%
ATCTAAACCACCAATTTCTT+TGG + chr1_4:56470815-56470834 Msa0171740:CDS 30.0%
TTTATCCACTTGAAAAGCTT+TGG - chr1_4:56470850-56470869 None:intergenic 30.0%
ACTATCTTCAAAAGCAATTC+TGG + chr1_4:56470880-56470899 Msa0171740:CDS 30.0%
TTACTTCATCGTTGCCTTAT+TGG + chr1_4:56469995-56470014 Msa0171740:CDS 35.0%
AGATGATGCTAAAGCCAATA+AGG - chr1_4:56470012-56470031 None:intergenic 35.0%
CAACACAAAAGTCTTGCAAT+GGG - chr1_4:56470058-56470077 None:intergenic 35.0%
GCAATCAATGATACCAAAAC+TGG + chr1_4:56470077-56470096 Msa0171740:CDS 35.0%
ATCAATGATACCAAAACTGG+TGG + chr1_4:56470080-56470099 Msa0171740:CDS 35.0%
TAATTTCCAGTGTTCGTGAA+TGG + chr1_4:56470357-56470376 Msa0171740:intron 35.0%
! AATTTTCCATTCACGAACAC+TGG - chr1_4:56470366-56470385 None:intergenic 35.0%
AATATTTCATTAACCGCCAC+TGG - chr1_4:56470483-56470502 None:intergenic 35.0%
GTGGCGGTTAATGAAATATT+AGG + chr1_4:56470483-56470502 Msa0171740:CDS 35.0%
ATATTAGGACTCAACACACT+TGG + chr1_4:56470498-56470517 Msa0171740:CDS 35.0%
CAACACACTTGGTATATCTT+TGG + chr1_4:56470509-56470528 Msa0171740:CDS 35.0%
!!! GAGATTCTTGTAGTTTTGGA+AGG + chr1_4:56470591-56470610 Msa0171740:CDS 35.0%
TCAATACTTTGGTGAAGAGA+CGG - chr1_4:56470659-56470678 None:intergenic 35.0%
ATCGCCTTTGTTCAATACTT+TGG - chr1_4:56470670-56470689 None:intergenic 35.0%
ATTCACTTCCAATTGAACGT+TGG + chr1_4:56470714-56470733 Msa0171740:CDS 35.0%
! TTCCAATTGAACGTTGGTTA+TGG + chr1_4:56470720-56470739 Msa0171740:CDS 35.0%
! TCCAATTGAACGTTGGTTAT+GGG + chr1_4:56470721-56470740 Msa0171740:CDS 35.0%
AGAACTTCCAAAGAAATTGG+TGG - chr1_4:56470825-56470844 None:intergenic 35.0%
GTGAGAACTTCCAAAGAAAT+TGG - chr1_4:56470828-56470847 None:intergenic 35.0%
TTACTTCATCGTTGCCTTAT+TGG + chr1_4:56469995-56470014 Msa0171740:CDS 35.0%
AGATGATGCTAAAGCCAATA+AGG - chr1_4:56470012-56470031 None:intergenic 35.0%
CAACACAAAAGTCTTGCAAT+GGG - chr1_4:56470058-56470077 None:intergenic 35.0%
GCAATCAATGATACCAAAAC+TGG + chr1_4:56470077-56470096 Msa0171740:CDS 35.0%
ATCAATGATACCAAAACTGG+TGG + chr1_4:56470080-56470099 Msa0171740:CDS 35.0%
TAATTTCCAGTGTTCGTGAA+TGG + chr1_4:56470357-56470376 Msa0171740:intron 35.0%
! AATTTTCCATTCACGAACAC+TGG - chr1_4:56470366-56470385 None:intergenic 35.0%
AATATTTCATTAACCGCCAC+TGG - chr1_4:56470483-56470502 None:intergenic 35.0%
GTGGCGGTTAATGAAATATT+AGG + chr1_4:56470483-56470502 Msa0171740:CDS 35.0%
ATATTAGGACTCAACACACT+TGG + chr1_4:56470498-56470517 Msa0171740:CDS 35.0%
CAACACACTTGGTATATCTT+TGG + chr1_4:56470509-56470528 Msa0171740:CDS 35.0%
!!! GAGATTCTTGTAGTTTTGGA+AGG + chr1_4:56470591-56470610 Msa0171740:CDS 35.0%
TCAATACTTTGGTGAAGAGA+CGG - chr1_4:56470659-56470678 None:intergenic 35.0%
ATCGCCTTTGTTCAATACTT+TGG - chr1_4:56470670-56470689 None:intergenic 35.0%
ATTCACTTCCAATTGAACGT+TGG + chr1_4:56470714-56470733 Msa0171740:CDS 35.0%
! TTCCAATTGAACGTTGGTTA+TGG + chr1_4:56470720-56470739 Msa0171740:CDS 35.0%
! TCCAATTGAACGTTGGTTAT+GGG + chr1_4:56470721-56470740 Msa0171740:CDS 35.0%
AGAACTTCCAAAGAAATTGG+TGG - chr1_4:56470825-56470844 None:intergenic 35.0%
GTGAGAACTTCCAAAGAAAT+TGG - chr1_4:56470828-56470847 None:intergenic 35.0%
!! TTGGCTTTAGCATCATCTGT+TGG + chr1_4:56470014-56470033 Msa0171740:CDS 40.0%
GCAACACAAAAGTCTTGCAA+TGG - chr1_4:56470059-56470078 None:intergenic 40.0%
AGATCCTAAGCTTGCAAATG+CGG + chr1_4:56470392-56470411 Msa0171740:CDS 40.0%
GCGGATGATTTCTTCTTTCA+AGG + chr1_4:56470411-56470430 Msa0171740:CDS 40.0%
! AGTGGATTTGAAGTATTCCC+AGG - chr1_4:56470444-56470463 None:intergenic 40.0%
GGGAATACTTCAAATCCACT+CGG + chr1_4:56470444-56470463 Msa0171740:CDS 40.0%
! TGAGGAGGATTTAGACCTTT+TGG - chr1_4:56470552-56470571 None:intergenic 40.0%
! TTGGAAGGTACGCTTTATGT+TGG + chr1_4:56470606-56470625 Msa0171740:CDS 40.0%
! ACGGTTATTGTCTTGATTCG+AGG - chr1_4:56470640-56470659 None:intergenic 40.0%
TGGAAGTGAATGAGACCAAT+TGG - chr1_4:56470705-56470724 None:intergenic 40.0%
! CCAATTGAACGTTGGTTATG+GGG + chr1_4:56470722-56470741 Msa0171740:CDS 40.0%
TTGCTATGGTAATCACTCCA+GGG - chr1_4:56470782-56470801 None:intergenic 40.0%
! TTTGCTATGGTAATCACTCC+AGG - chr1_4:56470783-56470802 None:intergenic 40.0%
ACCATAGCAAATGCTGTGTT+TGG + chr1_4:56470792-56470811 Msa0171740:CDS 40.0%
! TCCAAACACAGCATTTGCTA+TGG - chr1_4:56470796-56470815 None:intergenic 40.0%
!! TCTCACCAAAGCTTTTCAAG+TGG + chr1_4:56470842-56470861 Msa0171740:CDS 40.0%
!! TTGGCTTTAGCATCATCTGT+TGG + chr1_4:56470014-56470033 Msa0171740:CDS 40.0%
GCAACACAAAAGTCTTGCAA+TGG - chr1_4:56470059-56470078 None:intergenic 40.0%
AGATCCTAAGCTTGCAAATG+CGG + chr1_4:56470392-56470411 Msa0171740:CDS 40.0%
GCGGATGATTTCTTCTTTCA+AGG + chr1_4:56470411-56470430 Msa0171740:CDS 40.0%
! AGTGGATTTGAAGTATTCCC+AGG - chr1_4:56470444-56470463 None:intergenic 40.0%
GGGAATACTTCAAATCCACT+CGG + chr1_4:56470444-56470463 Msa0171740:CDS 40.0%
! TGAGGAGGATTTAGACCTTT+TGG - chr1_4:56470552-56470571 None:intergenic 40.0%
! TTGGAAGGTACGCTTTATGT+TGG + chr1_4:56470606-56470625 Msa0171740:CDS 40.0%
! ACGGTTATTGTCTTGATTCG+AGG - chr1_4:56470640-56470659 None:intergenic 40.0%
TGGAAGTGAATGAGACCAAT+TGG - chr1_4:56470705-56470724 None:intergenic 40.0%
! CCAATTGAACGTTGGTTATG+GGG + chr1_4:56470722-56470741 Msa0171740:CDS 40.0%
TTGCTATGGTAATCACTCCA+GGG - chr1_4:56470782-56470801 None:intergenic 40.0%
! TTTGCTATGGTAATCACTCC+AGG - chr1_4:56470783-56470802 None:intergenic 40.0%
ACCATAGCAAATGCTGTGTT+TGG + chr1_4:56470792-56470811 Msa0171740:CDS 40.0%
! TCCAAACACAGCATTTGCTA+TGG - chr1_4:56470796-56470815 None:intergenic 40.0%
!! TCTCACCAAAGCTTTTCAAG+TGG + chr1_4:56470842-56470861 Msa0171740:CDS 40.0%
! CAAAAGTCTTGCAATGGGCT+GGG - chr1_4:56470053-56470072 None:intergenic 45.0%
ACAAAAGTCTTGCAATGGGC+TGG - chr1_4:56470054-56470073 None:intergenic 45.0%
TCATCCGCATTTGCAAGCTT+AGG - chr1_4:56470399-56470418 None:intergenic 45.0%
TTCTTTCAAGGATTGGGACC+TGG + chr1_4:56470423-56470442 Msa0171740:CDS 45.0%
TCTTTCAAGGATTGGGACCT+GGG + chr1_4:56470424-56470443 Msa0171740:CDS 45.0%
! ATCTAAAGTGACTCCAGTGG+CGG + chr1_4:56470467-56470486 Msa0171740:CDS 45.0%
!! TTTTGGTGCAAAATCGACGC+GGG - chr1_4:56470535-56470554 None:intergenic 45.0%
!! CTTTTGGTGCAAAATCGACG+CGG - chr1_4:56470536-56470555 None:intergenic 45.0%
CAAGAATCTCAGTACCTCGA+GGG - chr1_4:56470581-56470600 None:intergenic 45.0%
ACAAGAATCTCAGTACCTCG+AGG - chr1_4:56470582-56470601 None:intergenic 45.0%
CCCCATAACCAACGTTCAAT+TGG - chr1_4:56470725-56470744 None:intergenic 45.0%
! ATTGAACGTTGGTTATGGGG+AGG + chr1_4:56470725-56470744 Msa0171740:CDS 45.0%
TTGGCTACTAAGACCAGCAA+TGG - chr1_4:56470757-56470776 None:intergenic 45.0%
! TGGTAATCACTCCAGGGTTT+TGG - chr1_4:56470776-56470795 None:intergenic 45.0%
! CAAAAGTCTTGCAATGGGCT+GGG - chr1_4:56470053-56470072 None:intergenic 45.0%
ACAAAAGTCTTGCAATGGGC+TGG - chr1_4:56470054-56470073 None:intergenic 45.0%
TCATCCGCATTTGCAAGCTT+AGG - chr1_4:56470399-56470418 None:intergenic 45.0%
TTCTTTCAAGGATTGGGACC+TGG + chr1_4:56470423-56470442 Msa0171740:CDS 45.0%
TCTTTCAAGGATTGGGACCT+GGG + chr1_4:56470424-56470443 Msa0171740:CDS 45.0%
! ATCTAAAGTGACTCCAGTGG+CGG + chr1_4:56470467-56470486 Msa0171740:CDS 45.0%
!! TTTTGGTGCAAAATCGACGC+GGG - chr1_4:56470535-56470554 None:intergenic 45.0%
!! CTTTTGGTGCAAAATCGACG+CGG - chr1_4:56470536-56470555 None:intergenic 45.0%
CAAGAATCTCAGTACCTCGA+GGG - chr1_4:56470581-56470600 None:intergenic 45.0%
ACAAGAATCTCAGTACCTCG+AGG - chr1_4:56470582-56470601 None:intergenic 45.0%
CCCCATAACCAACGTTCAAT+TGG - chr1_4:56470725-56470744 None:intergenic 45.0%
! ATTGAACGTTGGTTATGGGG+AGG + chr1_4:56470725-56470744 Msa0171740:CDS 45.0%
TTGGCTACTAAGACCAGCAA+TGG - chr1_4:56470757-56470776 None:intergenic 45.0%
! TGGTAATCACTCCAGGGTTT+TGG - chr1_4:56470776-56470795 None:intergenic 45.0%
!! TTGCAATGGGCTGGGATCAT+AGG - chr1_4:56470045-56470064 None:intergenic 50.0%
! GGAGTCACTTTAGATCCGAG+TGG - chr1_4:56470462-56470481 None:intergenic 50.0%
! CGGATCTAAAGTGACTCCAG+TGG + chr1_4:56470464-56470483 Msa0171740:CDS 50.0%
!!! CGCGTCGATTTTGCACCAAA+AGG + chr1_4:56470534-56470553 Msa0171740:CDS 50.0%
GGTCTTAGTAGCCAAAACCC+TGG + chr1_4:56470762-56470781 Msa0171740:CDS 50.0%
!! TTGCAATGGGCTGGGATCAT+AGG - chr1_4:56470045-56470064 None:intergenic 50.0%
! GGAGTCACTTTAGATCCGAG+TGG - chr1_4:56470462-56470481 None:intergenic 50.0%
! CGGATCTAAAGTGACTCCAG+TGG + chr1_4:56470464-56470483 Msa0171740:CDS 50.0%
!!! CGCGTCGATTTTGCACCAAA+AGG + chr1_4:56470534-56470553 Msa0171740:CDS 50.0%
GGTCTTAGTAGCCAAAACCC+TGG + chr1_4:56470762-56470781 Msa0171740:CDS 50.0%
GTACCTCGAGGGTGAGTGTG+AGG - chr1_4:56470570-56470589 None:intergenic 60.0%
GGGGAGGCTATTGCCATTGC+TGG + chr1_4:56470741-56470760 Msa0171740:CDS 60.0%
GTACCTCGAGGGTGAGTGTG+AGG - chr1_4:56470570-56470589 None:intergenic 60.0%
GGGGAGGCTATTGCCATTGC+TGG + chr1_4:56470741-56470760 Msa0171740:CDS 60.0%
CCTCGAGGGTGAGTGTGAGG+AGG - chr1_4:56470567-56470586 None:intergenic 65.0%
CCTCCTCACACTCACCCTCG+AGG + chr1_4:56470564-56470583 Msa0171740:CDS 65.0%
CCTCGAGGGTGAGTGTGAGG+AGG - chr1_4:56470567-56470586 None:intergenic 65.0%
CCTCCTCACACTCACCCTCG+AGG + chr1_4:56470564-56470583 Msa0171740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 56469984 56470917 56469984 ID=Msa0171740;Name=Msa0171740
chr1_4 mRNA 56469984 56470917 56469984 ID=Msa0171740-mRNA-1;Parent=Msa0171740;Name=Msa0171740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|222
chr1_4 exon 56469984 56470101 56469984 ID=Msa0171740-mRNA-1:exon:16980;Parent=Msa0171740-mRNA-1
chr1_4 exon 56470367 56470917 56470367 ID=Msa0171740-mRNA-1:exon:16981;Parent=Msa0171740-mRNA-1
chr1_4 CDS 56469984 56470101 56469984 ID=Msa0171740-mRNA-1:cds;Parent=Msa0171740-mRNA-1
chr1_4 CDS 56470367 56470917 56470367 ID=Msa0171740-mRNA-1:cds;Parent=Msa0171740-mRNA-1
Gene Sequence

>Msa0171740

ATGGGAGTTTTTTACTTCATCGTTGCCTTATTGGCTTTAGCATCATCTGTTGGTTTTGCCTATGATCCCAGCCCATTGCAAGACTTTTGTGTTGCAATCAATGATACCAAAACTGGTGTGTTCGTGAATGGAAAATTTTGCAAAGATCCTAAGCTTGCAAATGCGGATGATTTCTTCTTTCAAGGATTGGGACCTGGGAATACTTCAAATCCACTCGGATCTAAAGTGACTCCAGTGGCGGTTAATGAAATATTAGGACTCAACACACTTGGTATATCTTTGGCCCGCGTCGATTTTGCACCAAAAGGTCTAAATCCTCCTCACACTCACCCTCGAGGTACTGAGATTCTTGTAGTTTTGGAAGGTACGCTTTATGTTGGATTCGTTACCTCGAATCAAGACAATAACCGTCTCTTCACCAAAGTATTGAACAAAGGCGATGTATTTGTGTTTCCAATTGGTCTCATTCACTTCCAATTGAACGTTGGTTATGGGGAGGCTATTGCCATTGCTGGTCTTAGTAGCCAAAACCCTGGAGTGATTACCATAGCAAATGCTGTGTTTGGATCTAAACCACCAATTTCTTTGGAAGTTCTCACCAAAGCTTTTCAAGTGGATAAAAATGTAATCGACTATCTTCAAAAGCAATTCTGGTACAACAATAGTTAA

Protein sequence

>Msa0171740

MGVFYFIVALLALASSVGFAYDPSPLQDFCVAINDTKTGVFVNGKFCKDPKLANADDFFFQGLGPGNTSNPLGSKVTPVAVNEILGLNTLGISLARVDFAPKGLNPPHTHPRGTEILVVLEGTLYVGFVTSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGEAIAIAGLSSQNPGVITIANAVFGSKPPISLEVLTKAFQVDKNVIDYLQKQFWYNNS*