Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238210 | XP_003627593.1 | 83.796 | 216 | 6 | 1 | 1 | 187 | 53 | 268 | 7.91e-123 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238210 | sp|Q9M2E2|SDR1_ARATH | 48.077 | 208 | 79 | 1 | 7 | 185 | 61 | 268 | 1.20e-64 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0670360 | Msa1238210 | 0.800902 | 1.159140e-48 | -8.615850e-47 |
| Msa1238210 | Msa1238440 | 0.807306 | 5.391747e-50 | -8.615850e-47 |
| Msa1022490 | Msa1238210 | 0.801063 | 1.074261e-48 | -8.615850e-47 |
| Msa1022510 | Msa1238210 | 0.805097 | 1.573231e-49 | -8.615850e-47 |
| Msa1059660 | Msa1238210 | 0.800205 | 1.607785e-48 | -8.615850e-47 |
| Msa1061670 | Msa1238210 | 0.814971 | 1.173773e-51 | -8.615850e-47 |
| Msa1106680 | Msa1238210 | 0.821079 | 4.885473e-53 | -8.615850e-47 |
| Msa1106960 | Msa1238210 | 0.814674 | 1.366039e-51 | -8.615850e-47 |
| Msa0591490 | Msa1238210 | 0.830778 | 2.424149e-55 | -8.615850e-47 |
| Msa0913550 | Msa1238210 | 0.801486 | 8.801935e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238210 | MtrunA17_Chr8g0349721 | 83.796 | 216 | 6 | 1 | 1 | 187 | 53 | 268 | 7.28e-127 | 358 |
| Msa1238210 | MtrunA17_Chr8g0349701 | 83.796 | 216 | 6 | 1 | 1 | 187 | 53 | 268 | 4.38e-126 | 356 |
| Msa1238210 | MtrunA17_Chr7g0247041 | 57.944 | 214 | 60 | 2 | 3 | 186 | 55 | 268 | 1.28e-79 | 238 |
| Msa1238210 | MtrunA17_Chr8g0349781 | 48.624 | 218 | 78 | 3 | 2 | 185 | 54 | 271 | 7.50e-69 | 211 |
| Msa1238210 | MtrunA17_Chr8g0349811 | 49.083 | 218 | 77 | 3 | 2 | 185 | 54 | 271 | 2.00e-67 | 207 |
| Msa1238210 | MtrunA17_Chr7g0247011 | 50.467 | 214 | 70 | 4 | 1 | 185 | 53 | 259 | 2.93e-67 | 207 |
| Msa1238210 | MtrunA17_Chr8g0349801 | 49.083 | 218 | 77 | 3 | 2 | 185 | 54 | 271 | 4.37e-67 | 207 |
| Msa1238210 | MtrunA17_Chr8g0349741 | 50.476 | 210 | 68 | 4 | 5 | 185 | 58 | 260 | 5.45e-66 | 204 |
| Msa1238210 | MtrunA17_Chr8g0349831 | 47.945 | 219 | 79 | 4 | 2 | 185 | 55 | 273 | 1.21e-63 | 198 |
| Msa1238210 | MtrunA17_Chr8g0349851 | 46.119 | 219 | 83 | 3 | 2 | 185 | 54 | 272 | 2.88e-63 | 197 |
| Msa1238210 | MtrunA17_Chr8g0349761 | 45.872 | 218 | 84 | 3 | 2 | 185 | 55 | 272 | 2.74e-62 | 194 |
| Msa1238210 | MtrunA17_Chr8g0349771 | 45.872 | 218 | 84 | 3 | 2 | 185 | 54 | 271 | 4.13e-62 | 194 |
| Msa1238210 | MtrunA17_Chr8g0349751 | 47.945 | 219 | 79 | 4 | 2 | 185 | 104 | 322 | 6.84e-62 | 195 |
| Msa1238210 | MtrunA17_Chr5g0425391 | 47.248 | 218 | 83 | 2 | 1 | 186 | 53 | 270 | 7.47e-60 | 188 |
| Msa1238210 | MtrunA17_Chr8g0349641 | 46.847 | 222 | 82 | 4 | 1 | 187 | 53 | 273 | 3.87e-59 | 186 |
| Msa1238210 | MtrunA17_Chr8g0349671 | 47.059 | 221 | 83 | 4 | 1 | 187 | 53 | 273 | 7.70e-59 | 186 |
| Msa1238210 | MtrunA17_Chr8g0349651 | 46.606 | 221 | 83 | 4 | 1 | 187 | 32 | 251 | 2.81e-58 | 184 |
| Msa1238210 | MtrunA17_Chr7g0247031 | 45.833 | 216 | 78 | 6 | 1 | 185 | 54 | 261 | 1.34e-55 | 177 |
| Msa1238210 | MtrunA17_Chr3g0118511 | 41.518 | 224 | 91 | 5 | 2 | 186 | 50 | 272 | 1.20e-47 | 157 |
| Msa1238210 | MtrunA17_Chr7g0267881 | 40.331 | 181 | 55 | 2 | 1 | 152 | 60 | 216 | 3.30e-38 | 131 |
| Msa1238210 | MtrunA17_Chr3g0131521 | 33.641 | 217 | 85 | 5 | 10 | 186 | 88 | 285 | 2.16e-33 | 120 |
| Msa1238210 | MtrunA17_Chr5g0437701 | 67.105 | 76 | 25 | 0 | 111 | 186 | 27 | 102 | 8.68e-33 | 114 |
| Msa1238210 | MtrunA17_Chr1g0160511 | 32.579 | 221 | 90 | 5 | 7 | 187 | 90 | 291 | 8.76e-32 | 116 |
| Msa1238210 | MtrunA17_Chr4g0045691 | 28.767 | 146 | 66 | 3 | 79 | 186 | 1 | 146 | 1.06e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238210 | AT3G61220.1 | 48.077 | 208 | 79 | 1 | 7 | 185 | 61 | 268 | 1.22e-65 | 203 |
| Msa1238210 | AT3G61220.2 | 48.077 | 208 | 79 | 1 | 7 | 185 | 68 | 275 | 1.98e-65 | 203 |
| Msa1238210 | AT3G61220.3 | 48.077 | 208 | 79 | 1 | 7 | 185 | 92 | 299 | 3.69e-65 | 203 |
| Msa1238210 | AT2G24190.1 | 47.115 | 208 | 81 | 1 | 7 | 185 | 61 | 268 | 1.06e-61 | 193 |
| Msa1238210 | AT2G24190.2 | 47.115 | 208 | 81 | 1 | 7 | 185 | 66 | 273 | 1.17e-61 | 193 |
| Msa1238210 | AT1G01800.1 | 44.444 | 216 | 88 | 3 | 2 | 185 | 53 | 268 | 3.15e-57 | 182 |
| Msa1238210 | AT1G01800.2 | 42.458 | 179 | 72 | 2 | 38 | 185 | 55 | 233 | 1.91e-41 | 140 |
| Msa1238210 | AT3G59710.3 | 33.333 | 210 | 90 | 5 | 7 | 185 | 70 | 260 | 7.44e-29 | 108 |
| Msa1238210 | AT3G59710.1 | 33.333 | 210 | 90 | 5 | 7 | 185 | 80 | 270 | 7.74e-29 | 108 |
| Msa1238210 | AT5G61830.1 | 32.127 | 221 | 91 | 4 | 7 | 187 | 89 | 290 | 1.25e-28 | 108 |
| Msa1238210 | AT5G61830.2 | 32.127 | 221 | 91 | 4 | 7 | 187 | 89 | 290 | 1.25e-28 | 108 |
| Msa1238210 | AT3G59710.2 | 33.333 | 210 | 90 | 5 | 7 | 185 | 99 | 289 | 1.44e-28 | 108 |
| Msa1238210 | AT5G51030.1 | 29.545 | 220 | 96 | 4 | 7 | 186 | 88 | 288 | 3.60e-28 | 107 |
Find 34 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGCCAACATTTGTTTC+TGG | 0.189389 | 8_2:+18184312 | Msa1238210:CDS |
| TGGAGAGAATGTTGTTAAAA+AGG | 0.225969 | 8_2:+18182568 | Msa1238210:CDS |
| GAGTTCATCAAAATCCAATT+TGG | 0.251329 | 8_2:+18182416 | Msa1238210:CDS |
| AGATATCAAGCTTCCCAAAT+TGG | 0.260041 | 8_2:-18182430 | None:intergenic |
| ATATCAGTCTTAACAAAATC+AGG | 0.322498 | 8_2:-18184420 | None:intergenic |
| TGTGTTGAAATAAACTTCTT+TGG | 0.327150 | 8_2:+18183543 | Msa1238210:CDS |
| GTGAACAATGCTGGTGTTGC+TGG | 0.338979 | 8_2:+18182533 | Msa1238210:CDS |
| ATTTGGGAAGCTTGATATCT+TGG | 0.349168 | 8_2:+18182433 | Msa1238210:CDS |
| GTTAGGCCTTTCTGACTTTG+TGG | 0.382164 | 8_2:+18182343 | None:intergenic |
| AGTTCATCAAAATCCAATTT+GGG | 0.398379 | 8_2:+18182417 | Msa1238210:CDS |
| TTTCTAAAAGATTACAAAGA+AGG | 0.430015 | 8_2:+18184273 | Msa1238210:CDS |
| GTTTATTTCAACACATTCTT+CGG | 0.435982 | 8_2:-18183535 | None:intergenic |
| AGAGGAGACATTGACAATCC+TGG | 0.448062 | 8_2:-18183619 | None:intergenic |
| CTGATATTAATGAGATGAAA+GGG | 0.465202 | 8_2:+18184436 | Msa1238210:CDS |
| TGAAGTAGATAGTTGGAGCA+GGG | 0.493585 | 8_2:-18183595 | None:intergenic |
| TCCTGGGTGAAGTAGATAGT+TGG | 0.520218 | 8_2:-18183602 | None:intergenic |
| ACACAATTTATGCGGAAATG+AGG | 0.520903 | 8_2:-18184393 | None:intergenic |
| TAAGGGGTGAAATATCTGAT+TGG | 0.521800 | 8_2:+18183481 | Msa1238210:CDS |
| AGATTACAAAGAAGGAGCAT+TGG | 0.531996 | 8_2:+18184281 | Msa1238210:CDS |
| GTGAAGTAGATAGTTGGAGC+AGG | 0.535763 | 8_2:-18183596 | None:intergenic |
| CACAATTTATGCGGAAATGA+GGG | 0.540972 | 8_2:-18184392 | None:intergenic |
| GAGGAGACATTGACAATCCT+GGG | 0.550899 | 8_2:-18183618 | None:intergenic |
| CAGCTTTAAATTCTTACACA+AGG | 0.553733 | 8_2:+18184352 | Msa1238210:CDS |
| CTTGAATTGTCCACGTCTAG+AGG | 0.553769 | 8_2:-18183637 | None:intergenic |
| ACTGATATTAATGAGATGAA+AGG | 0.556446 | 8_2:+18184435 | Msa1238210:CDS |
| GAAGTAGATAGTTGGAGCAG+GGG | 0.571101 | 8_2:-18183594 | None:intergenic |
| TTTGGATAGGTGAACAATGC+TGG | 0.577708 | 8_2:+18182524 | Msa1238210:intron |
| TATCAGTCTTAACAAAATCA+GGG | 0.582226 | 8_2:-18184419 | None:intergenic |
| ATTTGTTTCTGGTTACACAA+TGG | 0.603998 | 8_2:+18184323 | Msa1238210:CDS |
| GTTGCTGGAGGAATAGTGAA+TGG | 0.611511 | 8_2:+18182548 | Msa1238210:CDS |
| GTGTAACCAGAAACAAATGT+TGG | 0.648385 | 8_2:-18184318 | None:intergenic |
| AACAATGCTGGTGTTGCTGG+AGG | 0.655043 | 8_2:+18182536 | Msa1238210:CDS |
| CAGGGCATACACAATTTATG+CGG | 0.666585 | 8_2:-18184401 | None:intergenic |
| TCCAACTATCTACTTCACCC+AGG | 0.691403 | 8_2:+18183601 | Msa1238210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAATAAATTAAAAAGT+AGG | + | chr8_2:18182805-18182824 | Msa1238210:intron | 10.0% |
| !! | ATATGTTGTAAAAAAAAATT+AGG | + | chr8_2:18182982-18183001 | Msa1238210:intron | 10.0% |
| !!! | ACAATTTTACAAATTAAATA+CGG | - | chr8_2:18183028-18183047 | None:intergenic | 10.0% |
| !!! | TAATTTGTAAAATTGTTTTA+CGG | + | chr8_2:18183032-18183051 | Msa1238210:intron | 10.0% |
| !! | TAATGCAAAAAATAATTATA+GGG | - | chr8_2:18184036-18184055 | None:intergenic | 10.0% |
| !! | TTTCAAATAAATTAAAAAGT+AGG | + | chr8_2:18182805-18182824 | Msa1238210:intron | 10.0% |
| !! | ATATGTTGTAAAAAAAAATT+AGG | + | chr8_2:18182982-18183001 | Msa1238210:intron | 10.0% |
| !!! | ACAATTTTACAAATTAAATA+CGG | - | chr8_2:18183028-18183047 | None:intergenic | 10.0% |
| !!! | TAATTTGTAAAATTGTTTTA+CGG | + | chr8_2:18183032-18183051 | Msa1238210:intron | 10.0% |
| !! | TAATGCAAAAAATAATTATA+GGG | - | chr8_2:18184036-18184055 | None:intergenic | 10.0% |
| !!! | ATAAAGTTGATTTATACATT+TGG | + | chr8_2:18182506-18182525 | Msa1238210:intron | 15.0% |
| !!! | TATGTTTTCTACAATAATAA+GGG | - | chr8_2:18182600-18182619 | None:intergenic | 15.0% |
| !!! | ATATGTTTTCTACAATAATA+AGG | - | chr8_2:18182601-18182620 | None:intergenic | 15.0% |
| !!! | ACAAAATTATTTTGCTATTT+TGG | - | chr8_2:18183136-18183155 | None:intergenic | 15.0% |
| !! | TTTAAAGACTTTAAACAAAT+AGG | + | chr8_2:18183781-18183800 | Msa1238210:intron | 15.0% |
| !! | ATTTAAACTCTCAATAATTA+CGG | + | chr8_2:18183980-18183999 | Msa1238210:intron | 15.0% |
| !! | GTAATGCAAAAAATAATTAT+AGG | - | chr8_2:18184037-18184056 | None:intergenic | 15.0% |
| !!! | ATAAAGTTGATTTATACATT+TGG | + | chr8_2:18182506-18182525 | Msa1238210:intron | 15.0% |
| !!! | TATGTTTTCTACAATAATAA+GGG | - | chr8_2:18182600-18182619 | None:intergenic | 15.0% |
| !!! | ATATGTTTTCTACAATAATA+AGG | - | chr8_2:18182601-18182620 | None:intergenic | 15.0% |
| !!! | ACAAAATTATTTTGCTATTT+TGG | - | chr8_2:18183136-18183155 | None:intergenic | 15.0% |
| !! | TTTAAAGACTTTAAACAAAT+AGG | + | chr8_2:18183781-18183800 | Msa1238210:intron | 15.0% |
| !! | ATTTAAACTCTCAATAATTA+CGG | + | chr8_2:18183980-18183999 | Msa1238210:intron | 15.0% |
| !! | GTAATGCAAAAAATAATTAT+AGG | - | chr8_2:18184037-18184056 | None:intergenic | 15.0% |
| !!! | TAGTCTTATACAATTTTTGT+TGG | - | chr8_2:18183159-18183178 | None:intergenic | 20.0% |
| !! | AAGACAAAAATTTGATTACA+TGG | + | chr8_2:18183438-18183457 | Msa1238210:intron | 20.0% |
| !!! | TGGTATTGATTTAATTTTGT+AGG | + | chr8_2:18183458-18183477 | Msa1238210:intron | 20.0% |
| !!! | TTGATTTAATTTTGTAGGTA+AGG | + | chr8_2:18183463-18183482 | Msa1238210:intron | 20.0% |
| !!! | TGATTTAATTTTGTAGGTAA+GGG | + | chr8_2:18183464-18183483 | Msa1238210:intron | 20.0% |
| !!! | ATCTTTCTACTTATTTTGTA+AGG | + | chr8_2:18183805-18183824 | Msa1238210:intron | 20.0% |
| !!! | TTGTTTTTAAAAATTATCGG+CGG | - | chr8_2:18183902-18183921 | None:intergenic | 20.0% |
| !! | AAGATTCAAAATTGCATTAT+TGG | + | chr8_2:18183954-18183973 | Msa1238210:intron | 20.0% |
| !! | TTTAAACTCTCAATAATTAC+GGG | + | chr8_2:18183981-18184000 | Msa1238210:intron | 20.0% |
| !!! | TTTCTAAAAGATTACAAAGA+AGG | + | chr8_2:18184273-18184292 | Msa1238210:CDS | 20.0% |
| !!! | TAGTCTTATACAATTTTTGT+TGG | - | chr8_2:18183159-18183178 | None:intergenic | 20.0% |
| !! | AAGACAAAAATTTGATTACA+TGG | + | chr8_2:18183438-18183457 | Msa1238210:intron | 20.0% |
| !!! | TGGTATTGATTTAATTTTGT+AGG | + | chr8_2:18183458-18183477 | Msa1238210:intron | 20.0% |
| !!! | TTGATTTAATTTTGTAGGTA+AGG | + | chr8_2:18183463-18183482 | Msa1238210:intron | 20.0% |
| !!! | TGATTTAATTTTGTAGGTAA+GGG | + | chr8_2:18183464-18183483 | Msa1238210:intron | 20.0% |
| !!! | ATCTTTCTACTTATTTTGTA+AGG | + | chr8_2:18183805-18183824 | Msa1238210:intron | 20.0% |
| !!! | TTGTTTTTAAAAATTATCGG+CGG | - | chr8_2:18183902-18183921 | None:intergenic | 20.0% |
| !! | AAGATTCAAAATTGCATTAT+TGG | + | chr8_2:18183954-18183973 | Msa1238210:intron | 20.0% |
| !! | TTTAAACTCTCAATAATTAC+GGG | + | chr8_2:18183981-18184000 | Msa1238210:intron | 20.0% |
| !!! | TTTCTAAAAGATTACAAAGA+AGG | + | chr8_2:18184273-18184292 | Msa1238210:CDS | 20.0% |
| !! | CTAAAGAAGAAACACTTTTA+GGG | - | chr8_2:18182394-18182413 | None:intergenic | 25.0% |
| !! | ACTAAAGAAGAAACACTTTT+AGG | - | chr8_2:18182395-18182414 | None:intergenic | 25.0% |
| ! | AGTTCATCAAAATCCAATTT+GGG | + | chr8_2:18182417-18182436 | Msa1238210:CDS | 25.0% |
| !! | TATTGACTAACAAGTTAAGA+AGG | - | chr8_2:18182489-18182508 | None:intergenic | 25.0% |
| !! | GTTGATTTATACATTTGGAT+AGG | + | chr8_2:18182511-18182530 | Msa1238210:intron | 25.0% |
| ! | ATTAAAAAGTAGGCTTGAAA+TGG | + | chr8_2:18182732-18182751 | Msa1238210:intron | 25.0% |
| !!! | CTATTTTGGACAAAAAGTTA+TGG | - | chr8_2:18183122-18183141 | None:intergenic | 25.0% |
| ! | ATCTGAAAAACAGTAAATAC+CGG | - | chr8_2:18183251-18183270 | None:intergenic | 25.0% |
| !!! | CTGCAATCTAAAGATTTTTT+TGG | + | chr8_2:18183412-18183431 | Msa1238210:intron | 25.0% |
| !!! | GATTTAATTTTGTAGGTAAG+GGG | + | chr8_2:18183465-18183484 | Msa1238210:intron | 25.0% |
| ! | GTTTATTTCAACACATTCTT+CGG | - | chr8_2:18183538-18183557 | None:intergenic | 25.0% |
| ! | TGTGTTGAAATAAACTTCTT+TGG | + | chr8_2:18183543-18183562 | Msa1238210:CDS | 25.0% |
| !!! | CTTATTTTGTAAGGACATAA+AGG | + | chr8_2:18183814-18183833 | Msa1238210:intron | 25.0% |
| ! | TAAACTGAAAGGATAAAAGA+AGG | - | chr8_2:18184173-18184192 | None:intergenic | 25.0% |
| ! | AACGTTACAAATGAAAAACT+TGG | + | chr8_2:18184234-18184253 | Msa1238210:intron | 25.0% |
| ! | TATCAGTCTTAACAAAATCA+GGG | - | chr8_2:18184422-18184441 | None:intergenic | 25.0% |
| ! | ATATCAGTCTTAACAAAATC+AGG | - | chr8_2:18184423-18184442 | None:intergenic | 25.0% |
| ! | ACTGATATTAATGAGATGAA+AGG | + | chr8_2:18184435-18184454 | Msa1238210:CDS | 25.0% |
| ! | CTGATATTAATGAGATGAAA+GGG | + | chr8_2:18184436-18184455 | Msa1238210:CDS | 25.0% |
| !! | CTAAAGAAGAAACACTTTTA+GGG | - | chr8_2:18182394-18182413 | None:intergenic | 25.0% |
| !! | ACTAAAGAAGAAACACTTTT+AGG | - | chr8_2:18182395-18182414 | None:intergenic | 25.0% |
| ! | AGTTCATCAAAATCCAATTT+GGG | + | chr8_2:18182417-18182436 | Msa1238210:CDS | 25.0% |
| !! | TATTGACTAACAAGTTAAGA+AGG | - | chr8_2:18182489-18182508 | None:intergenic | 25.0% |
| !! | GTTGATTTATACATTTGGAT+AGG | + | chr8_2:18182511-18182530 | Msa1238210:intron | 25.0% |
| ! | ATTAAAAAGTAGGCTTGAAA+TGG | + | chr8_2:18182732-18182751 | Msa1238210:intron | 25.0% |
| !!! | CTATTTTGGACAAAAAGTTA+TGG | - | chr8_2:18183122-18183141 | None:intergenic | 25.0% |
| ! | ATCTGAAAAACAGTAAATAC+CGG | - | chr8_2:18183251-18183270 | None:intergenic | 25.0% |
| !!! | CTGCAATCTAAAGATTTTTT+TGG | + | chr8_2:18183412-18183431 | Msa1238210:intron | 25.0% |
| !!! | GATTTAATTTTGTAGGTAAG+GGG | + | chr8_2:18183465-18183484 | Msa1238210:intron | 25.0% |
| ! | GTTTATTTCAACACATTCTT+CGG | - | chr8_2:18183538-18183557 | None:intergenic | 25.0% |
| ! | TGTGTTGAAATAAACTTCTT+TGG | + | chr8_2:18183543-18183562 | Msa1238210:CDS | 25.0% |
| !!! | CTTATTTTGTAAGGACATAA+AGG | + | chr8_2:18183814-18183833 | Msa1238210:intron | 25.0% |
| ! | TAAACTGAAAGGATAAAAGA+AGG | - | chr8_2:18184173-18184192 | None:intergenic | 25.0% |
| ! | AACGTTACAAATGAAAAACT+TGG | + | chr8_2:18184234-18184253 | Msa1238210:intron | 25.0% |
| ! | TATCAGTCTTAACAAAATCA+GGG | - | chr8_2:18184422-18184441 | None:intergenic | 25.0% |
| ! | ATATCAGTCTTAACAAAATC+AGG | - | chr8_2:18184423-18184442 | None:intergenic | 25.0% |
| ! | ACTGATATTAATGAGATGAA+AGG | + | chr8_2:18184435-18184454 | Msa1238210:CDS | 25.0% |
| ! | CTGATATTAATGAGATGAAA+GGG | + | chr8_2:18184436-18184455 | Msa1238210:CDS | 25.0% |
| GAGTTCATCAAAATCCAATT+TGG | + | chr8_2:18182416-18182435 | Msa1238210:CDS | 30.0% | |
| TGGAGAGAATGTTGTTAAAA+AGG | + | chr8_2:18182568-18182587 | Msa1238210:CDS | 30.0% | |
| TAAAAGATGATGACTGAAGA+TGG | - | chr8_2:18182893-18182912 | None:intergenic | 30.0% | |
| TTGGACAAAAAGTTATGGTA+TGG | - | chr8_2:18183117-18183136 | None:intergenic | 30.0% | |
| ! | AACAAATGTTGGCCAATTTT+TGG | - | chr8_2:18184310-18184329 | None:intergenic | 30.0% |
| !! | ATTTGTTTCTGGTTACACAA+TGG | + | chr8_2:18184323-18184342 | Msa1238210:CDS | 30.0% |
| !! | CAGCTTTAAATTCTTACACA+AGG | + | chr8_2:18184352-18184371 | Msa1238210:CDS | 30.0% |
| GAGTTCATCAAAATCCAATT+TGG | + | chr8_2:18182416-18182435 | Msa1238210:CDS | 30.0% | |
| TGGAGAGAATGTTGTTAAAA+AGG | + | chr8_2:18182568-18182587 | Msa1238210:CDS | 30.0% | |
| TAAAAGATGATGACTGAAGA+TGG | - | chr8_2:18182893-18182912 | None:intergenic | 30.0% | |
| TTGGACAAAAAGTTATGGTA+TGG | - | chr8_2:18183117-18183136 | None:intergenic | 30.0% | |
| ! | AACAAATGTTGGCCAATTTT+TGG | - | chr8_2:18184310-18184329 | None:intergenic | 30.0% |
| !! | ATTTGTTTCTGGTTACACAA+TGG | + | chr8_2:18184323-18184342 | Msa1238210:CDS | 30.0% |
| !! | CAGCTTTAAATTCTTACACA+AGG | + | chr8_2:18184352-18184371 | Msa1238210:CDS | 30.0% |
| GAAAAACCACAAAGTCAGAA+AGG | - | chr8_2:18182352-18182371 | None:intergenic | 35.0% | |
| AGATATCAAGCTTCCCAAAT+TGG | - | chr8_2:18182433-18182452 | None:intergenic | 35.0% | |
| ATTTGGGAAGCTTGATATCT+TGG | + | chr8_2:18182433-18182452 | Msa1238210:CDS | 35.0% | |
| !! | AAGCATCGTTTAGTCTTGAT+CGG | + | chr8_2:18182667-18182686 | Msa1238210:intron | 35.0% |
| !! | AAGCATCGTTTAGTCTTGAT+CGG | + | chr8_2:18182667-18182686 | Msa1238210:intron | 35.0% |
| GTTATCAAATCCAACCAAGA+TGG | + | chr8_2:18182840-18182859 | Msa1238210:intron | 35.0% | |
| TATGGTTAAGTGAGAGACAA+GGG | - | chr8_2:18183099-18183118 | None:intergenic | 35.0% | |
| AACAACACAAGCACAACATA+AGG | - | chr8_2:18183224-18183243 | None:intergenic | 35.0% | |
| GAAAAACAGTAAATACCGGA+TGG | - | chr8_2:18183247-18183266 | None:intergenic | 35.0% | |
| TAAGGGGTGAAATATCTGAT+TGG | + | chr8_2:18183481-18183500 | Msa1238210:CDS | 35.0% | |
| AAACTCTCAATAATTACGGG+TGG | + | chr8_2:18183984-18184003 | Msa1238210:intron | 35.0% | |
| GAATAATCCTTCAGTAATGC+AGG | + | chr8_2:18184062-18184081 | Msa1238210:intron | 35.0% | |
| GGAAAGTAGTCAATATGTGT+CGG | + | chr8_2:18184083-18184102 | Msa1238210:intron | 35.0% | |
| CTCATTTGGCATAAACTGAA+AGG | - | chr8_2:18184184-18184203 | None:intergenic | 35.0% | |
| TTCAGTTTATGCCAAATGAG+TGG | + | chr8_2:18184184-18184203 | Msa1238210:intron | 35.0% | |
| TCAGTTTATGCCAAATGAGT+GGG | + | chr8_2:18184185-18184204 | Msa1238210:intron | 35.0% | |
| ! | AGATTACAAAGAAGGAGCAT+TGG | + | chr8_2:18184281-18184300 | Msa1238210:CDS | 35.0% |
| !! | GAGCATTGGAAACCAAAAAT+TGG | + | chr8_2:18184295-18184314 | Msa1238210:CDS | 35.0% |
| AATTGGCCAACATTTGTTTC+TGG | + | chr8_2:18184312-18184331 | Msa1238210:CDS | 35.0% | |
| GTGTAACCAGAAACAAATGT+TGG | - | chr8_2:18184321-18184340 | None:intergenic | 35.0% | |
| CACAATTTATGCGGAAATGA+GGG | - | chr8_2:18184395-18184414 | None:intergenic | 35.0% | |
| ACACAATTTATGCGGAAATG+AGG | - | chr8_2:18184396-18184415 | None:intergenic | 35.0% | |
| !!! | GGGTTTTTAAGCATTGATGA+AGG | + | chr8_2:18184456-18184475 | Msa1238210:CDS | 35.0% |
| GAAAAACCACAAAGTCAGAA+AGG | - | chr8_2:18182352-18182371 | None:intergenic | 35.0% | |
| AGATATCAAGCTTCCCAAAT+TGG | - | chr8_2:18182433-18182452 | None:intergenic | 35.0% | |
| ATTTGGGAAGCTTGATATCT+TGG | + | chr8_2:18182433-18182452 | Msa1238210:CDS | 35.0% | |
| !! | AAGCATCGTTTAGTCTTGAT+CGG | + | chr8_2:18182667-18182686 | Msa1238210:intron | 35.0% |
| !! | AAGCATCGTTTAGTCTTGAT+CGG | + | chr8_2:18182667-18182686 | Msa1238210:intron | 35.0% |
| GTTATCAAATCCAACCAAGA+TGG | + | chr8_2:18182840-18182859 | Msa1238210:intron | 35.0% | |
| TATGGTTAAGTGAGAGACAA+GGG | - | chr8_2:18183099-18183118 | None:intergenic | 35.0% | |
| AACAACACAAGCACAACATA+AGG | - | chr8_2:18183224-18183243 | None:intergenic | 35.0% | |
| GAAAAACAGTAAATACCGGA+TGG | - | chr8_2:18183247-18183266 | None:intergenic | 35.0% | |
| TAAGGGGTGAAATATCTGAT+TGG | + | chr8_2:18183481-18183500 | Msa1238210:CDS | 35.0% | |
| AAACTCTCAATAATTACGGG+TGG | + | chr8_2:18183984-18184003 | Msa1238210:intron | 35.0% | |
| GAATAATCCTTCAGTAATGC+AGG | + | chr8_2:18184062-18184081 | Msa1238210:intron | 35.0% | |
| GGAAAGTAGTCAATATGTGT+CGG | + | chr8_2:18184083-18184102 | Msa1238210:intron | 35.0% | |
| CTCATTTGGCATAAACTGAA+AGG | - | chr8_2:18184184-18184203 | None:intergenic | 35.0% | |
| TTCAGTTTATGCCAAATGAG+TGG | + | chr8_2:18184184-18184203 | Msa1238210:intron | 35.0% | |
| TCAGTTTATGCCAAATGAGT+GGG | + | chr8_2:18184185-18184204 | Msa1238210:intron | 35.0% | |
| ! | AGATTACAAAGAAGGAGCAT+TGG | + | chr8_2:18184281-18184300 | Msa1238210:CDS | 35.0% |
| !! | GAGCATTGGAAACCAAAAAT+TGG | + | chr8_2:18184295-18184314 | Msa1238210:CDS | 35.0% |
| AATTGGCCAACATTTGTTTC+TGG | + | chr8_2:18184312-18184331 | Msa1238210:CDS | 35.0% | |
| GTGTAACCAGAAACAAATGT+TGG | - | chr8_2:18184321-18184340 | None:intergenic | 35.0% | |
| CACAATTTATGCGGAAATGA+GGG | - | chr8_2:18184395-18184414 | None:intergenic | 35.0% | |
| ACACAATTTATGCGGAAATG+AGG | - | chr8_2:18184396-18184415 | None:intergenic | 35.0% | |
| !!! | GGGTTTTTAAGCATTGATGA+AGG | + | chr8_2:18184456-18184475 | Msa1238210:CDS | 35.0% |
| TTTGGATAGGTGAACAATGC+TGG | + | chr8_2:18182524-18182543 | Msa1238210:intron | 40.0% | |
| !! | ATCGTTTAGTCTTGATCGGA+TGG | + | chr8_2:18182671-18182690 | Msa1238210:intron | 40.0% |
| TAAGTGAGAGACAAGGGTTT+CGG | - | chr8_2:18183093-18183112 | None:intergenic | 40.0% | |
| GTATGGTTAAGTGAGAGACA+AGG | - | chr8_2:18183100-18183119 | None:intergenic | 40.0% | |
| AACATAAGGTAGAGCAGCAT+TGG | - | chr8_2:18183210-18183229 | None:intergenic | 40.0% | |
| TGAAGTAGATAGTTGGAGCA+GGG | - | chr8_2:18183598-18183617 | None:intergenic | 40.0% | |
| ! | GGGTTTTTCTGCATTACTCA+GGG | - | chr8_2:18184016-18184035 | None:intergenic | 40.0% |
| ! | AGGGTTTTTCTGCATTACTC+AGG | - | chr8_2:18184017-18184036 | None:intergenic | 40.0% |
| CTACTTTCCTGCATTACTGA+AGG | - | chr8_2:18184072-18184091 | None:intergenic | 40.0% | |
| ! | TAGTCAATATGTGTCGGTGT+TGG | + | chr8_2:18184089-18184108 | Msa1238210:intron | 40.0% |
| ACGTCTTCAATCTCATGTGT+CGG | + | chr8_2:18184121-18184140 | Msa1238210:intron | 40.0% | |
| CAGGGCATACACAATTTATG+CGG | - | chr8_2:18184404-18184423 | None:intergenic | 40.0% | |
| TTTGGATAGGTGAACAATGC+TGG | + | chr8_2:18182524-18182543 | Msa1238210:intron | 40.0% | |
| !! | ATCGTTTAGTCTTGATCGGA+TGG | + | chr8_2:18182671-18182690 | Msa1238210:intron | 40.0% |
| TAAGTGAGAGACAAGGGTTT+CGG | - | chr8_2:18183093-18183112 | None:intergenic | 40.0% | |
| GTATGGTTAAGTGAGAGACA+AGG | - | chr8_2:18183100-18183119 | None:intergenic | 40.0% | |
| AACATAAGGTAGAGCAGCAT+TGG | - | chr8_2:18183210-18183229 | None:intergenic | 40.0% | |
| TGAAGTAGATAGTTGGAGCA+GGG | - | chr8_2:18183598-18183617 | None:intergenic | 40.0% | |
| ! | GGGTTTTTCTGCATTACTCA+GGG | - | chr8_2:18184016-18184035 | None:intergenic | 40.0% |
| ! | AGGGTTTTTCTGCATTACTC+AGG | - | chr8_2:18184017-18184036 | None:intergenic | 40.0% |
| CTACTTTCCTGCATTACTGA+AGG | - | chr8_2:18184072-18184091 | None:intergenic | 40.0% | |
| ! | TAGTCAATATGTGTCGGTGT+TGG | + | chr8_2:18184089-18184108 | Msa1238210:intron | 40.0% |
| ACGTCTTCAATCTCATGTGT+CGG | + | chr8_2:18184121-18184140 | Msa1238210:intron | 40.0% | |
| CAGGGCATACACAATTTATG+CGG | - | chr8_2:18184404-18184423 | None:intergenic | 40.0% | |
| TGGGAAGCTTGATATCTTGG+TGG | + | chr8_2:18182436-18182455 | Msa1238210:intron | 45.0% | |
| GGGAAGCTTGATATCTTGGT+GGG | + | chr8_2:18182437-18182456 | Msa1238210:intron | 45.0% | |
| GTTGCTGGAGGAATAGTGAA+TGG | + | chr8_2:18182548-18182567 | Msa1238210:CDS | 45.0% | |
| ACGCTGACAACAAGATTGCA+TGG | - | chr8_2:18182645-18182664 | None:intergenic | 45.0% | |
| ! | ATGACTTGCACCATCTTGGT+TGG | - | chr8_2:18182853-18182872 | None:intergenic | 45.0% |
| ! | GATGATGACTTGCACCATCT+TGG | - | chr8_2:18182857-18182876 | None:intergenic | 45.0% |
| TTACGGACACGACAAACTAG+AGG | + | chr8_2:18183049-18183068 | Msa1238210:intron | 45.0% | |
| ! | TGTGCTTGTGTTGTTCCATC+CGG | + | chr8_2:18183229-18183248 | Msa1238210:intron | 45.0% |
| GAAGTAGATAGTTGGAGCAG+GGG | - | chr8_2:18183597-18183616 | None:intergenic | 45.0% | |
| GTGAAGTAGATAGTTGGAGC+AGG | - | chr8_2:18183599-18183618 | None:intergenic | 45.0% | |
| TCCAACTATCTACTTCACCC+AGG | + | chr8_2:18183601-18183620 | Msa1238210:CDS | 45.0% | |
| TCCTGGGTGAAGTAGATAGT+TGG | - | chr8_2:18183605-18183624 | None:intergenic | 45.0% | |
| GAGGAGACATTGACAATCCT+GGG | - | chr8_2:18183621-18183640 | None:intergenic | 45.0% | |
| AGAGGAGACATTGACAATCC+TGG | - | chr8_2:18183622-18183641 | None:intergenic | 45.0% | |
| CTTGAATTGTCCACGTCTAG+AGG | - | chr8_2:18183640-18183659 | None:intergenic | 45.0% | |
| CTCTAGACGTGGACAATTCA+AGG | + | chr8_2:18183638-18183657 | Msa1238210:intron | 45.0% | |
| AGAACTACTTGCGCAACACA+TGG | + | chr8_2:18183846-18183865 | Msa1238210:intron | 45.0% | |
| CATGAGATTGAAGACGTGTC+TGG | - | chr8_2:18184118-18184137 | None:intergenic | 45.0% | |
| TGGGAAGCTTGATATCTTGG+TGG | + | chr8_2:18182436-18182455 | Msa1238210:intron | 45.0% | |
| GGGAAGCTTGATATCTTGGT+GGG | + | chr8_2:18182437-18182456 | Msa1238210:intron | 45.0% | |
| GTTGCTGGAGGAATAGTGAA+TGG | + | chr8_2:18182548-18182567 | Msa1238210:CDS | 45.0% | |
| ACGCTGACAACAAGATTGCA+TGG | - | chr8_2:18182645-18182664 | None:intergenic | 45.0% | |
| ! | ATGACTTGCACCATCTTGGT+TGG | - | chr8_2:18182853-18182872 | None:intergenic | 45.0% |
| ! | GATGATGACTTGCACCATCT+TGG | - | chr8_2:18182857-18182876 | None:intergenic | 45.0% |
| TTACGGACACGACAAACTAG+AGG | + | chr8_2:18183049-18183068 | Msa1238210:intron | 45.0% | |
| ! | TGTGCTTGTGTTGTTCCATC+CGG | + | chr8_2:18183229-18183248 | Msa1238210:intron | 45.0% |
| GAAGTAGATAGTTGGAGCAG+GGG | - | chr8_2:18183597-18183616 | None:intergenic | 45.0% | |
| GTGAAGTAGATAGTTGGAGC+AGG | - | chr8_2:18183599-18183618 | None:intergenic | 45.0% | |
| TCCAACTATCTACTTCACCC+AGG | + | chr8_2:18183601-18183620 | Msa1238210:CDS | 45.0% | |
| TCCTGGGTGAAGTAGATAGT+TGG | - | chr8_2:18183605-18183624 | None:intergenic | 45.0% | |
| GAGGAGACATTGACAATCCT+GGG | - | chr8_2:18183621-18183640 | None:intergenic | 45.0% | |
| AGAGGAGACATTGACAATCC+TGG | - | chr8_2:18183622-18183641 | None:intergenic | 45.0% | |
| CTTGAATTGTCCACGTCTAG+AGG | - | chr8_2:18183640-18183659 | None:intergenic | 45.0% | |
| CTCTAGACGTGGACAATTCA+AGG | + | chr8_2:18183638-18183657 | Msa1238210:intron | 45.0% | |
| AGAACTACTTGCGCAACACA+TGG | + | chr8_2:18183846-18183865 | Msa1238210:intron | 45.0% | |
| CATGAGATTGAAGACGTGTC+TGG | - | chr8_2:18184118-18184137 | None:intergenic | 45.0% | |
| !!! | TTTTAAATAAATTAAAAAGT+AGG | + | chr8_2:18182722-18182741 | Msa1238210:intron | 5.0% |
| !!! | ATTTTGTTTTTAAAAATTAT+CGG | - | chr8_2:18183905-18183924 | None:intergenic | 5.0% |
| !!! | TTTTAAATAAATTAAAAAGT+AGG | + | chr8_2:18182722-18182741 | Msa1238210:intron | 5.0% |
| !!! | ATTTTGTTTTTAAAAATTAT+CGG | - | chr8_2:18183905-18183924 | None:intergenic | 5.0% |
| !! | GTGAACAATGCTGGTGTTGC+TGG | + | chr8_2:18182533-18182552 | Msa1238210:CDS | 50.0% |
| !! | AACAATGCTGGTGTTGCTGG+AGG | + | chr8_2:18182536-18182555 | Msa1238210:CDS | 50.0% |
| GACACGACAAACTAGAGGCA+AGG | + | chr8_2:18183054-18183073 | Msa1238210:intron | 50.0% | |
| GTCAATGTCTCCTCTAGACG+TGG | + | chr8_2:18183627-18183646 | Msa1238210:intron | 50.0% | |
| ATGCCAAATGAGTGGGCAAG+AGG | + | chr8_2:18184192-18184211 | Msa1238210:intron | 50.0% | |
| ACACCTCTTGCCCACTCATT+TGG | - | chr8_2:18184198-18184217 | None:intergenic | 50.0% | |
| !! | GTGAACAATGCTGGTGTTGC+TGG | + | chr8_2:18182533-18182552 | Msa1238210:CDS | 50.0% |
| !! | AACAATGCTGGTGTTGCTGG+AGG | + | chr8_2:18182536-18182555 | Msa1238210:CDS | 50.0% |
| GACACGACAAACTAGAGGCA+AGG | + | chr8_2:18183054-18183073 | Msa1238210:intron | 50.0% | |
| GTCAATGTCTCCTCTAGACG+TGG | + | chr8_2:18183627-18183646 | Msa1238210:intron | 50.0% | |
| ATGCCAAATGAGTGGGCAAG+AGG | + | chr8_2:18184192-18184211 | Msa1238210:intron | 50.0% | |
| ACACCTCTTGCCCACTCATT+TGG | - | chr8_2:18184198-18184217 | None:intergenic | 50.0% | |
| CGACGTGTCAGTAGCAAGCT+CGG | - | chr8_2:18183874-18183893 | None:intergenic | 55.0% | |
| CGACGTGTCAGTAGCAAGCT+CGG | - | chr8_2:18183874-18183893 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 18182344 | 18184488 | 18182344 | ID=Msa1238210;Name=Msa1238210 |
| chr8_2 | mRNA | 18182344 | 18184488 | 18182344 | ID=Msa1238210-mRNA-1;Parent=Msa1238210;Name=Msa1238210-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0.33|0.25|4|0|187 |
| chr8_2 | exon | 18182344 | 18182454 | 18182344 | ID=Msa1238210-mRNA-1:exon:6865;Parent=Msa1238210-mRNA-1 |
| chr8_2 | exon | 18182533 | 18182589 | 18182533 | ID=Msa1238210-mRNA-1:exon:6866;Parent=Msa1238210-mRNA-1 |
| chr8_2 | exon | 18183480 | 18183645 | 18183480 | ID=Msa1238210-mRNA-1:exon:6867;Parent=Msa1238210-mRNA-1 |
| chr8_2 | exon | 18184262 | 18184488 | 18184262 | ID=Msa1238210-mRNA-1:exon:6868;Parent=Msa1238210-mRNA-1 |
| chr8_2 | CDS | 18182344 | 18182454 | 18182344 | ID=Msa1238210-mRNA-1:cds;Parent=Msa1238210-mRNA-1 |
| chr8_2 | CDS | 18182533 | 18182589 | 18182533 | ID=Msa1238210-mRNA-1:cds;Parent=Msa1238210-mRNA-1 |
| chr8_2 | CDS | 18183480 | 18183645 | 18183480 | ID=Msa1238210-mRNA-1:cds;Parent=Msa1238210-mRNA-1 |
| chr8_2 | CDS | 18184262 | 18184488 | 18184262 | ID=Msa1238210-mRNA-1:cds;Parent=Msa1238210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
