Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1245820 | XP_013444640.2 | 94.539 | 293 | 16 | 0 | 1 | 293 | 1 | 293 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1245820 | sp|Q9M365|FB331_ARATH | 60.075 | 268 | 107 | 0 | 26 | 293 | 66 | 333 | 1.21e-120 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1245820 | G8A2W2 | 94.539 | 293 | 16 | 0 | 1 | 293 | 1 | 293 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0792290 | Msa1245820 | 0.927327 | 1.372309e-91 | -8.615850e-47 |
| Msa1245820 | Msa1316930 | 0.927200 | 1.636989e-91 | -8.615850e-47 |
| Msa1245820 | Msa1316950 | 0.827748 | 1.318315e-54 | -8.615850e-47 |
| Msa1077460 | Msa1245820 | 0.809419 | 1.909595e-50 | -8.615850e-47 |
| Msa1177130 | Msa1245820 | 0.889424 | 2.452036e-73 | -8.615850e-47 |
| Msa1177160 | Msa1245820 | 0.924558 | 5.996459e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1245820 | MtrunA17_Chr8g0347091 | 94.539 | 293 | 16 | 0 | 1 | 293 | 1 | 293 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1245820 | AT3G61730.1 | 60.075 | 268 | 107 | 0 | 26 | 293 | 66 | 333 | 1.23e-121 | 352 |
| Msa1245820 | AT5G36000.1 | 56.716 | 268 | 116 | 0 | 26 | 293 | 62 | 329 | 6.95e-115 | 335 |
| Msa1245820 | AT3G62500.1 | 49.390 | 164 | 62 | 3 | 129 | 292 | 178 | 320 | 5.43e-43 | 151 |
| Msa1245820 | AT3G62500.2 | 49.390 | 164 | 62 | 3 | 129 | 292 | 178 | 320 | 5.95e-43 | 152 |
Find 75 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 8_2:-36038414 | Msa1245820:CDS |
| GACTGAGATAGCAAAGTTTC+TGG | 0.178170 | 8_2:-36039376 | Msa1245820:CDS |
| CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 8_2:-36038016 | Msa1245820:CDS |
| CTATCATGGATGATGCTATT+TGG | 0.269492 | 8_2:-36039302 | Msa1245820:CDS |
| GATATCAAGAAACGAGCTTA+TGG | 0.282438 | 8_2:-36037962 | Msa1245820:CDS |
| AAGCTCTACACTTCAGCTTT+TGG | 0.288606 | 8_2:-36039216 | Msa1245820:intron |
| GAAGGTTCGATGACGACATT+TGG | 0.372412 | 8_2:-36039398 | Msa1245820:intron |
| GTACCAGCAATCCAGATTCC+AGG | 0.388870 | 8_2:+36038380 | None:intergenic |
| ACTAATTTACAAGAAAATAA+AGG | 0.390325 | 8_2:-36037386 | Msa1245820:CDS |
| AAACCTGGAATCTGGATTGC+TGG | 0.401140 | 8_2:-36038383 | Msa1245820:intron |
| ACAACATTAAACCTGGAATC+TGG | 0.402861 | 8_2:-36038391 | Msa1245820:CDS |
| ATGAAAAGCAATCATGGTCT+TGG | 0.408754 | 8_2:+36037424 | None:intergenic |
| TTTGATTACAAGTCATGGAT+TGG | 0.411304 | 8_2:-36037467 | Msa1245820:CDS |
| ATATCAAGAAACGAGCTTAT+GGG | 0.412617 | 8_2:-36037961 | Msa1245820:CDS |
| GGATTGGGAAGGATAATTAC+TGG | 0.420053 | 8_2:-36037451 | Msa1245820:CDS |
| CCGATCATTCCACTTTCTCA+TGG | 0.422415 | 8_2:-36040283 | Msa1245820:intron |
| AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 8_2:-36038009 | Msa1245820:CDS |
| ATGGTTCCGCCGTGCTATCA+TGG | 0.453543 | 8_2:-36039316 | Msa1245820:CDS |
| CTCCTGCTGTCGGAACTTGT+AGG | 0.455095 | 8_2:+36039094 | None:intergenic |
| CACTTGAATGCCACAGGTGG+AGG | 0.462347 | 8_2:+36039243 | None:intergenic |
| CTTCGCCGGTGGCAGTTCTC+CGG | 0.464227 | 8_2:+36040364 | None:intergenic |
| GAGAGAGAACCATGAGAAAG+TGG | 0.465930 | 8_2:+36040274 | None:intergenic |
| TTGATTACAAGTCATGGATT+GGG | 0.468371 | 8_2:-36037466 | Msa1245820:CDS |
| TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 8_2:-36038015 | Msa1245820:CDS |
| TGCTGCATGAAAAGCAATCA+TGG | 0.479901 | 8_2:+36037418 | None:intergenic |
| GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 8_2:-36038450 | Msa1245820:CDS |
| CAAGTATTGAGGTCACAAAC+CGG | 0.486887 | 8_2:+36038237 | None:intergenic |
| AAACGAGCTTATGGGGCTGC+TGG | 0.488804 | 8_2:-36037953 | Msa1245820:CDS |
| CGGTATTTGATTACAAGTCA+TGG | 0.490207 | 8_2:-36037472 | Msa1245820:CDS |
| GAAAATTCAGTCTCTCTGTC+AGG | 0.492809 | 8_2:+36038480 | None:intergenic |
| TCGGAGAGAAAGCGAGGACG+AGG | 0.497635 | 8_2:+36040302 | None:intergenic |
| CTGGCGAGTTCTTCTACGTC+TGG | 0.501579 | 8_2:-36037908 | Msa1245820:intron |
| TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 8_2:-36038256 | Msa1245820:CDS |
| AGGAGAGTTGCAAGAGCAGA+TGG | 0.504948 | 8_2:+36040322 | None:intergenic |
| AATGCCACAGGTGGAGGAGA+TGG | 0.508135 | 8_2:+36039249 | None:intergenic |
| TCTTCTTTCTTTAACTCCCC+CGG | 0.510064 | 8_2:+36038458 | None:intergenic |
| CCATGAGAAAGTGGAATGAT+CGG | 0.511183 | 8_2:+36040283 | None:intergenic |
| CGGTGGCAGTTCTCCGGCGT+CGG | 0.514667 | 8_2:+36040370 | None:intergenic |
| TGGCAGTTCTCCGGCGTCGG+AGG | 0.518218 | 8_2:+36040373 | None:intergenic |
| CTCCACCTGTGGCATTCAAG+TGG | 0.519260 | 8_2:-36039242 | Msa1245820:CDS |
| CTCCTACAAGTTCCGACAGC+AGG | 0.520835 | 8_2:-36039096 | Msa1245820:CDS |
| TTGCTCCACTTGAATGCCAC+AGG | 0.532015 | 8_2:+36039237 | None:intergenic |
| GTGGAGGAGATGGAACTTGA+AGG | 0.535718 | 8_2:+36039259 | None:intergenic |
| AATTACCATCACAAGTATTG+AGG | 0.538205 | 8_2:+36038226 | None:intergenic |
| CGGAAAGTCTCTGATAATGC+TGG | 0.538739 | 8_2:-36039352 | Msa1245820:CDS |
| TATAGGAACAATGCAGACAT+TGG | 0.539902 | 8_2:-36038062 | Msa1245820:intron |
| AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 8_2:-36037992 | Msa1245820:CDS |
| TGAAAAGCAATCATGGTCTT+GGG | 0.544175 | 8_2:+36037425 | None:intergenic |
| AACGCTACTTCCTCCGACGC+CGG | 0.546509 | 8_2:-36040383 | Msa1245820:CDS |
| TTTCTGGACAACATTAAACC+TGG | 0.556196 | 8_2:-36038398 | Msa1245820:CDS |
| TGATAGCACGGCGGAACCAT+CGG | 0.557930 | 8_2:+36039319 | None:intergenic |
| CAATGCAGACATTGGATGCA+AGG | 0.559581 | 8_2:-36038054 | Msa1245820:CDS |
| CGTCGGATTCGCTTCGCCGG+TGG | 0.564375 | 8_2:+36040353 | None:intergenic |
| GAGGGCTACTGAAGAATCAA+AGG | 0.570484 | 8_2:+36038502 | None:intergenic |
| CTCCACTTGAATGCCACAGG+TGG | 0.571927 | 8_2:+36039240 | None:intergenic |
| AGTTCCATCTCCTCCACCTG+TGG | 0.576848 | 8_2:-36039253 | Msa1245820:CDS |
| TATCAAGAAACGAGCTTATG+GGG | 0.585752 | 8_2:-36037960 | Msa1245820:CDS |
| CTATCAGATTGGATGCGCAT+CGG | 0.586986 | 8_2:-36038533 | Msa1245820:intron |
| CAATGTGCTTCTCCTGCTGT+CGG | 0.593050 | 8_2:+36039084 | None:intergenic |
| CAGACGTAGAAGAACTCGCC+AGG | 0.599890 | 8_2:+36037909 | None:intergenic |
| AAGTATTGAGGTCACAAACC+GGG | 0.600506 | 8_2:+36038238 | None:intergenic |
| TGTGACCTCAATACTTGTGA+TGG | 0.607442 | 8_2:-36038231 | Msa1245820:intron |
| AATTCAGTCTCTCTGTCAGG+AGG | 0.618594 | 8_2:+36038483 | None:intergenic |
| CGACAGCAGGAGAAGCACAT+TGG | 0.619455 | 8_2:-36039083 | Msa1245820:intron |
| GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 8_2:-36038428 | Msa1245820:CDS |
| TGCTGGCAGCGACAAACCGA+TGG | 0.623760 | 8_2:-36039335 | Msa1245820:CDS |
| TAGCATCATCCATGATAGCA+CGG | 0.625465 | 8_2:+36039307 | None:intergenic |
| TTACAAGTCATGGATTGGGA+AGG | 0.625946 | 8_2:-36037462 | Msa1245820:CDS |
| CGACGCCGGAGAACTGCCAC+CGG | 0.630367 | 8_2:-36040369 | Msa1245820:CDS |
| AGACTACGAAAATGGGAACT+GGG | 0.645326 | 8_2:-36038008 | Msa1245820:CDS |
| GAGATAGCAAAGTTTCTGGA+CGG | 0.652573 | 8_2:-36039372 | Msa1245820:CDS |
| ATTCAGTCTCTCTGTCAGGA+GGG | 0.655055 | 8_2:+36038484 | None:intergenic |
| GAATGATCGGAGAGAAAGCG+AGG | 0.656826 | 8_2:+36040296 | None:intergenic |
| AAATGGGAACTGGGATTACG+AGG | 0.675337 | 8_2:-36037999 | Msa1245820:CDS |
| CATCATCCATGATAGCACGG+CGG | 0.806408 | 8_2:+36039310 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTAATCTTTAAATTAAA+TGG | - | chr8_2:36040285-36040304 | Msa1245820:CDS | 10.0% |
| !!! | TTTTCTATAACTTTTATATG+TGG | - | chr8_2:36038183-36038202 | Msa1245820:intron | 15.0% |
| !!! | ATTAACATTGATTTTGAAAT+TGG | - | chr8_2:36038646-36038665 | Msa1245820:intron | 15.0% |
| !! | ACTAATTTACAAGAAAATAA+AGG | - | chr8_2:36040397-36040416 | Msa1245820:CDS | 15.0% |
| !! | TATGTGGAAATAATCAATTA+AGG | - | chr8_2:36038199-36038218 | Msa1245820:intron | 20.0% |
| !!! | AGTTAATGCTTTTTATCATT+TGG | - | chr8_2:36038835-36038854 | Msa1245820:intron | 20.0% |
| !!! | GTTAATGCTTTTTATCATTT+GGG | - | chr8_2:36038836-36038855 | Msa1245820:intron | 20.0% |
| !! | TATAATATGTTCTATCAGAT+TGG | - | chr8_2:36039239-36039258 | Msa1245820:CDS | 20.0% |
| !! | CTTAAAGAAAAACATTAACA+AGG | + | chr8_2:36039942-36039961 | None:intergenic | 20.0% |
| !!! | TTTTGAAATTAATTTGTTCC+TGG | + | chr8_2:36040124-36040143 | None:intergenic | 20.0% |
| !! | GGAAATTCAGTTTGAATTTT+CGG | - | chr8_2:36037660-36037679 | Msa1245820:intron | 25.0% |
| !!! | ATGAAGTTTTTGAGTTTTGA+CGG | - | chr8_2:36037926-36037945 | Msa1245820:CDS | 25.0% |
| !! | TTTGAAATTGGAATTTCAGA+TGG | - | chr8_2:36038658-36038677 | Msa1245820:intron | 25.0% |
| ! | TTGAAATTGGAATTTCAGAT+GGG | - | chr8_2:36038659-36038678 | Msa1245820:intron | 25.0% |
| ! | TGTGAATCTCACAATATATT+AGG | + | chr8_2:36038752-36038771 | None:intergenic | 25.0% |
| !! | AGAATTTTGCATAAGCAATA+AGG | + | chr8_2:36039024-36039043 | None:intergenic | 25.0% |
| ! | TATAAGAATGAATCAGTCAA+TGG | + | chr8_2:36039131-36039150 | None:intergenic | 25.0% |
| ! | GTTATATTGTCAAAGATAAC+TGG | + | chr8_2:36039432-36039451 | None:intergenic | 25.0% |
| !! | TGAATTATTCATGGTGTTAA+GGG | + | chr8_2:36039611-36039630 | None:intergenic | 25.0% |
| !! | ATGAATTATTCATGGTGTTA+AGG | + | chr8_2:36039612-36039631 | None:intergenic | 25.0% |
| ! | AGAGTAGAAACATATATACA+TGG | - | chr8_2:36040024-36040043 | Msa1245820:intron | 25.0% |
| ! | ATCTTTAAATTAAATGGCAG+CGG | - | chr8_2:36040291-36040310 | Msa1245820:CDS | 25.0% |
| TTCATTTCTAAGCTTCAGAT+CGG | - | chr8_2:36037639-36037658 | Msa1245820:intron | 30.0% | |
| !! | TGCTAGAAGCATTTGAAAAT+CGG | - | chr8_2:36037848-36037867 | Msa1245820:intron | 30.0% |
| ATGAAATGAAAAAGCTGCAA+CGG | - | chr8_2:36037952-36037971 | Msa1245820:CDS | 30.0% | |
| TTAATCCGAATGCTTAATGA+AGG | - | chr8_2:36038367-36038386 | Msa1245820:intron | 30.0% | |
| CAGTTATGGAAATGAATTTG+AGG | - | chr8_2:36038796-36038815 | Msa1245820:intron | 30.0% | |
| TTATGGAAATGAATTTGAGG+TGG | - | chr8_2:36038799-36038818 | Msa1245820:intron | 30.0% | |
| !! | GATAAAAAGCATTAACTGTG+CGG | + | chr8_2:36038832-36038851 | None:intergenic | 30.0% |
| CAATAACTCTTGTCAATCTA+AGG | + | chr8_2:36038956-36038975 | None:intergenic | 30.0% | |
| CATTGTCAGATCTTGATTTA+GGG | + | chr8_2:36038983-36039002 | None:intergenic | 30.0% | |
| TCATTGTCAGATCTTGATTT+AGG | + | chr8_2:36038984-36039003 | None:intergenic | 30.0% | |
| CTGACAATGATATATGTACA+TGG | - | chr8_2:36038994-36039013 | Msa1245820:intron | 30.0% | |
| TCAATGGTTGGATAAATTCT+AGG | + | chr8_2:36039115-36039134 | None:intergenic | 30.0% | |
| GTTAAAGAAAGAAGAAAGCA+TGG | - | chr8_2:36039333-36039352 | Msa1245820:CDS | 30.0% | |
| ! | AATTACCATCACAAGTATTG+AGG | + | chr8_2:36039560-36039579 | None:intergenic | 30.0% |
| AAGGGATATACAAAACTCAT+TGG | + | chr8_2:36039593-36039612 | None:intergenic | 30.0% | |
| AACCACTGATGAATTATTCA+TGG | + | chr8_2:36039620-36039639 | None:intergenic | 30.0% | |
| ATATCAAGAAACGAGCTTAT+GGG | - | chr8_2:36039822-36039841 | Msa1245820:intron | 30.0% | |
| AATGACATGACATTAGATTG+TGG | + | chr8_2:36039977-36039996 | None:intergenic | 30.0% | |
| ! | CTTTTTACCAGTTTCAGTTA+AGG | - | chr8_2:36040055-36040074 | Msa1245820:intron | 30.0% |
| AATGAATGTATAGATAGTCC+AGG | - | chr8_2:36040103-36040122 | Msa1245820:intron | 30.0% | |
| TAGTAACTATCTTCTTGGAA+GGG | + | chr8_2:36040235-36040254 | None:intergenic | 30.0% | |
| TTAGTAACTATCTTCTTGGA+AGG | + | chr8_2:36040236-36040255 | None:intergenic | 30.0% | |
| GAACTTAGTAACTATCTTCT+TGG | + | chr8_2:36040240-36040259 | None:intergenic | 30.0% | |
| AGAAGATAGTTACTAAGTTC+TGG | - | chr8_2:36040240-36040259 | Msa1245820:intron | 30.0% | |
| TTTGATTACAAGTCATGGAT+TGG | - | chr8_2:36040316-36040335 | Msa1245820:CDS | 30.0% | |
| TTGATTACAAGTCATGGATT+GGG | - | chr8_2:36040317-36040336 | Msa1245820:CDS | 30.0% | |
| TCGAACCTTCATTAAGCATT+CGG | + | chr8_2:36038375-36038394 | None:intergenic | 35.0% | |
| CTATCATGGATGATGCTATT+TGG | - | chr8_2:36038481-36038500 | Msa1245820:CDS | 35.0% | |
| TGCATATTCATGAACATCGA+TGG | + | chr8_2:36038613-36038632 | None:intergenic | 35.0% | |
| ATAGATTCCACACACAGTTA+TGG | - | chr8_2:36038782-36038801 | Msa1245820:intron | 35.0% | |
| TTCATTTCCATAACTGTGTG+TGG | + | chr8_2:36038792-36038811 | None:intergenic | 35.0% | |
| ! | AAAAGATTGATGACTCACAC+AGG | + | chr8_2:36038894-36038913 | None:intergenic | 35.0% |
| AGAATGAATCAGTCAATGGT+TGG | + | chr8_2:36039127-36039146 | None:intergenic | 35.0% | |
| GAAACTATGTTGAAGACTCA+CGG | - | chr8_2:36039355-36039374 | Msa1245820:CDS | 35.0% | |
| TTTCTGGACAACATTAAACC+TGG | - | chr8_2:36039385-36039404 | Msa1245820:CDS | 35.0% | |
| ACAACATTAAACCTGGAATC+TGG | - | chr8_2:36039392-36039411 | Msa1245820:CDS | 35.0% | |
| CACCATGAATAATTCATCAG+TGG | - | chr8_2:36039615-36039634 | Msa1245820:intron | 35.0% | |
| ! | GTTACTGTTTTGTACTGCAA+GGG | - | chr8_2:36039637-36039656 | Msa1245820:intron | 35.0% |
| GGGTTTGCGTTAGAATAATA+AGG | - | chr8_2:36039657-36039676 | Msa1245820:intron | 35.0% | |
| CATGTTTCTCCTGCTTATAT+AGG | - | chr8_2:36039704-36039723 | Msa1245820:intron | 35.0% | |
| TGCATTGTTCCTATATAAGC+AGG | + | chr8_2:36039716-36039735 | None:intergenic | 35.0% | |
| TATAGGAACAATGCAGACAT+TGG | - | chr8_2:36039721-36039740 | Msa1245820:intron | 35.0% | |
| TCTGTGAAGACTACGAAAAT+GGG | - | chr8_2:36039768-36039787 | Msa1245820:intron | 35.0% | |
| GATATCAAGAAACGAGCTTA+TGG | - | chr8_2:36039821-36039840 | Msa1245820:intron | 35.0% | |
| TATCAAGAAACGAGCTTATG+GGG | - | chr8_2:36039823-36039842 | Msa1245820:intron | 35.0% | |
| CAGGTGTTTCACATCAAAAA+TGG | + | chr8_2:36039858-36039877 | None:intergenic | 35.0% | |
| ! | CATTTTTGATGTGAAACACC+TGG | - | chr8_2:36039856-36039875 | Msa1245820:intron | 35.0% |
| CGGTATTTGATTACAAGTCA+TGG | - | chr8_2:36040311-36040330 | Msa1245820:CDS | 35.0% | |
| TGAAAAGCAATCATGGTCTT+GGG | + | chr8_2:36040361-36040380 | None:intergenic | 35.0% | |
| ATGAAAAGCAATCATGGTCT+TGG | + | chr8_2:36040362-36040381 | None:intergenic | 35.0% | |
| !!! | AGCAGATGGTTTTGTTACGT+CGG | + | chr8_2:36037450-36037469 | None:intergenic | 40.0% |
| CCATGAGAAAGTGGAATGAT+CGG | + | chr8_2:36037503-36037522 | None:intergenic | 40.0% | |
| TCAAATCGCACACGAAGTAA+CGG | + | chr8_2:36037790-36037809 | None:intergenic | 40.0% | |
| GACTGAGATAGCAAAGTTTC+TGG | - | chr8_2:36038407-36038426 | Msa1245820:CDS | 40.0% | |
| ! | GAGATAGCAAAGTTTCTGGA+CGG | - | chr8_2:36038411-36038430 | Msa1245820:CDS | 40.0% |
| TAGCATCATCCATGATAGCA+CGG | + | chr8_2:36038479-36038498 | None:intergenic | 40.0% | |
| ! | AAGCTCTACACTTCAGCTTT+TGG | - | chr8_2:36038567-36038586 | Msa1245820:intron | 40.0% |
| GAAAATTCAGTCTCTCTGTC+AGG | + | chr8_2:36039306-36039325 | None:intergenic | 40.0% | |
| ! | GACAGAGAGACTGAATTTTC+CGG | - | chr8_2:36039306-36039325 | Msa1245820:CDS | 40.0% |
| ! | ACAGAGAGACTGAATTTTCC+GGG | - | chr8_2:36039307-36039326 | Msa1245820:CDS | 40.0% |
| TCTTCTTTCTTTAACTCCCC+CGG | + | chr8_2:36039328-36039347 | None:intergenic | 40.0% | |
| !! | AAGTATTGAGGTCACAAACC+GGG | + | chr8_2:36039548-36039567 | None:intergenic | 40.0% |
| !! | CAAGTATTGAGGTCACAAAC+CGG | + | chr8_2:36039549-36039568 | None:intergenic | 40.0% |
| TGTGACCTCAATACTTGTGA+TGG | - | chr8_2:36039552-36039571 | Msa1245820:intron | 40.0% | |
| ! | GGTTACTGTTTTGTACTGCA+AGG | - | chr8_2:36039636-36039655 | Msa1245820:intron | 40.0% |
| ! | CATTTTCGTAGTCTTCACAG+AGG | + | chr8_2:36039769-36039788 | None:intergenic | 40.0% |
| CTCTGTGAAGACTACGAAAA+TGG | - | chr8_2:36039767-36039786 | Msa1245820:intron | 40.0% | |
| AAGACTACGAAAATGGGAAC+TGG | - | chr8_2:36039774-36039793 | Msa1245820:intron | 40.0% | |
| AGACTACGAAAATGGGAACT+GGG | - | chr8_2:36039775-36039794 | Msa1245820:intron | 40.0% | |
| GTCAACTTAACAACAGTCAG+TGG | - | chr8_2:36039916-36039935 | Msa1245820:intron | 40.0% | |
| TGCGTAACCTTAACTGAAAC+TGG | + | chr8_2:36040065-36040084 | None:intergenic | 40.0% | |
| CTCCGAATGATTCTTGGTTT+GGG | - | chr8_2:36040156-36040175 | Msa1245820:intron | 40.0% | |
| ! | TCCGAATGATTCTTGGTTTG+GGG | - | chr8_2:36040157-36040176 | Msa1245820:intron | 40.0% |
| TCCCCAAACCAAGAATCATT+CGG | + | chr8_2:36040161-36040180 | None:intergenic | 40.0% | |
| !! | TTACAAGTCATGGATTGGGA+AGG | - | chr8_2:36040321-36040340 | Msa1245820:CDS | 40.0% |
| GGATTGGGAAGGATAATTAC+TGG | - | chr8_2:36040332-36040351 | Msa1245820:CDS | 40.0% | |
| TGCTGCATGAAAAGCAATCA+TGG | + | chr8_2:36040368-36040387 | None:intergenic | 40.0% | |
| CCGATCATTCCACTTTCTCA+TGG | - | chr8_2:36037500-36037519 | Msa1245820:intron | 45.0% | |
| GAGAGAGAACCATGAGAAAG+TGG | + | chr8_2:36037512-36037531 | None:intergenic | 45.0% | |
| GAAGGTTCGATGACGACATT+TGG | - | chr8_2:36038385-36038404 | Msa1245820:CDS | 45.0% | |
| ! | CGGAAAGTCTCTGATAATGC+TGG | - | chr8_2:36038431-36038450 | Msa1245820:CDS | 45.0% |
| ! | GAACATCGATGGAAGCATAG+AGG | + | chr8_2:36038602-36038621 | None:intergenic | 45.0% |
| CTATCAGATTGGATGCGCAT+CGG | - | chr8_2:36039250-36039269 | Msa1245820:CDS | 45.0% | |
| GAGGGCTACTGAAGAATCAA+AGG | + | chr8_2:36039284-36039303 | None:intergenic | 45.0% | |
| ATTCAGTCTCTCTGTCAGGA+GGG | + | chr8_2:36039302-36039321 | None:intergenic | 45.0% | |
| AATTCAGTCTCTCTGTCAGG+AGG | + | chr8_2:36039303-36039322 | None:intergenic | 45.0% | |
| ! | CAGAGAGACTGAATTTTCCG+GGG | - | chr8_2:36039308-36039327 | Msa1245820:CDS | 45.0% |
| ! | AGAGAGACTGAATTTTCCGG+GGG | - | chr8_2:36039309-36039328 | Msa1245820:CDS | 45.0% |
| AAACCTGGAATCTGGATTGC+TGG | - | chr8_2:36039400-36039419 | Msa1245820:intron | 45.0% | |
| CAATGCAGACATTGGATGCA+AGG | - | chr8_2:36039729-36039748 | Msa1245820:intron | 45.0% | |
| AAATGGGAACTGGGATTACG+AGG | - | chr8_2:36039784-36039803 | Msa1245820:intron | 45.0% | |
| AACTGGGATTACGAGGTTGT+AGG | - | chr8_2:36039791-36039810 | Msa1245820:intron | 45.0% | |
| TGAAGCCTCCGAATGATTCT+TGG | - | chr8_2:36040150-36040169 | Msa1245820:intron | 45.0% | |
| CCAAACCAAGAATCATTCGG+AGG | + | chr8_2:36040158-36040177 | None:intergenic | 45.0% | |
| CCTCCGAATGATTCTTGGTT+TGG | - | chr8_2:36040155-36040174 | Msa1245820:intron | 45.0% | |
| AGGAGAGTTGCAAGAGCAGA+TGG | + | chr8_2:36037464-36037483 | None:intergenic | 50.0% | |
| GAATGATCGGAGAGAAAGCG+AGG | + | chr8_2:36037490-36037509 | None:intergenic | 50.0% | |
| CATCATCCATGATAGCACGG+CGG | + | chr8_2:36038476-36038495 | None:intergenic | 50.0% | |
| GTGGAGGAGATGGAACTTGA+AGG | + | chr8_2:36038527-36038546 | None:intergenic | 50.0% | |
| TTGCTCCACTTGAATGCCAC+AGG | + | chr8_2:36038549-36038568 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCCTGCTGT+CGG | + | chr8_2:36038702-36038721 | None:intergenic | 50.0% | |
| !! | GACTCACGGTTGTTGCTTTC+TGG | - | chr8_2:36039369-36039388 | Msa1245820:CDS | 50.0% |
| GTACCAGCAATCCAGATTCC+AGG | + | chr8_2:36039406-36039425 | None:intergenic | 50.0% | |
| TTACGTCGGATTCGCTTCGC+CGG | + | chr8_2:36037436-36037455 | None:intergenic | 55.0% | |
| TGATAGCACGGCGGAACCAT+CGG | + | chr8_2:36038467-36038486 | None:intergenic | 55.0% | |
| ATGGTTCCGCCGTGCTATCA+TGG | - | chr8_2:36038467-36038486 | Msa1245820:CDS | 55.0% | |
| AGTTCCATCTCCTCCACCTG+TGG | - | chr8_2:36038530-36038549 | Msa1245820:intron | 55.0% | |
| AATGCCACAGGTGGAGGAGA+TGG | + | chr8_2:36038537-36038556 | None:intergenic | 55.0% | |
| CACTTGAATGCCACAGGTGG+AGG | + | chr8_2:36038543-36038562 | None:intergenic | 55.0% | |
| CTCCACCTGTGGCATTCAAG+TGG | - | chr8_2:36038541-36038560 | Msa1245820:intron | 55.0% | |
| CTCCACTTGAATGCCACAGG+TGG | + | chr8_2:36038546-36038565 | None:intergenic | 55.0% | |
| CTCCTACAAGTTCCGACAGC+AGG | - | chr8_2:36038687-36038706 | Msa1245820:intron | 55.0% | |
| CTCCTGCTGTCGGAACTTGT+AGG | + | chr8_2:36038692-36038711 | None:intergenic | 55.0% | |
| ! | CGACAGCAGGAGAAGCACAT+TGG | - | chr8_2:36038700-36038719 | Msa1245820:intron | 55.0% |
| AAACGAGCTTATGGGGCTGC+TGG | - | chr8_2:36039830-36039849 | Msa1245820:intron | 55.0% | |
| CAGACGTAGAAGAACTCGCC+AGG | + | chr8_2:36039877-36039896 | None:intergenic | 55.0% | |
| CTGGCGAGTTCTTCTACGTC+TGG | - | chr8_2:36039875-36039894 | Msa1245820:intron | 55.0% | |
| AACGCTACTTCCTCCGACGC+CGG | - | chr8_2:36037400-36037419 | Msa1245820:CDS | 60.0% | |
| TCGGAGAGAAAGCGAGGACG+AGG | + | chr8_2:36037484-36037503 | None:intergenic | 60.0% | |
| TGCTGGCAGCGACAAACCGA+TGG | - | chr8_2:36038448-36038467 | Msa1245820:CDS | 60.0% | |
| TCTGCAGCTTGTGCGATGCC+CGG | - | chr8_2:36039527-36039546 | Msa1245820:intron | 60.0% | |
| CTTCGCCGGTGGCAGTTCTC+CGG | + | chr8_2:36037422-36037441 | None:intergenic | 65.0% | |
| ! | TGGCAGTTCTCCGGCGTCGG+AGG | + | chr8_2:36037413-36037432 | None:intergenic | 70.0% |
| CGGTGGCAGTTCTCCGGCGT+CGG | + | chr8_2:36037416-36037435 | None:intergenic | 70.0% | |
| CGACGCCGGAGAACTGCCAC+CGG | - | chr8_2:36037414-36037433 | Msa1245820:CDS | 70.0% | |
| CGTCGGATTCGCTTCGCCGG+TGG | + | chr8_2:36037433-36037452 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 36037382 | 36040423 | 36037382 | ID=Msa1245820;Name=Msa1245820 |
| chr8_2 | mRNA | 36037382 | 36040423 | 36037382 | ID=Msa1245820-mRNA-1;Parent=Msa1245820;Name=Msa1245820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|7|0|293 |
| chr8_2 | exon | 36040284 | 36040423 | 36040284 | ID=Msa1245820-mRNA-1:exon:11452;Parent=Msa1245820-mRNA-1 |
| chr8_2 | exon | 36039217 | 36039416 | 36039217 | ID=Msa1245820-mRNA-1:exon:11451;Parent=Msa1245820-mRNA-1 |
| chr8_2 | exon | 36039084 | 36039128 | 36039084 | ID=Msa1245820-mRNA-1:exon:11450;Parent=Msa1245820-mRNA-1 |
| chr8_2 | exon | 36038384 | 36038548 | 36038384 | ID=Msa1245820-mRNA-1:exon:11449;Parent=Msa1245820-mRNA-1 |
| chr8_2 | exon | 36038232 | 36038279 | 36038232 | ID=Msa1245820-mRNA-1:exon:11448;Parent=Msa1245820-mRNA-1 |
| chr8_2 | exon | 36037909 | 36038079 | 36037909 | ID=Msa1245820-mRNA-1:exon:11447;Parent=Msa1245820-mRNA-1 |
| chr8_2 | exon | 36037382 | 36037494 | 36037382 | ID=Msa1245820-mRNA-1:exon:11446;Parent=Msa1245820-mRNA-1 |
| chr8_2 | CDS | 36040284 | 36040423 | 36040284 | ID=Msa1245820-mRNA-1:cds;Parent=Msa1245820-mRNA-1 |
| chr8_2 | CDS | 36039217 | 36039416 | 36039217 | ID=Msa1245820-mRNA-1:cds;Parent=Msa1245820-mRNA-1 |
| chr8_2 | CDS | 36039084 | 36039128 | 36039084 | ID=Msa1245820-mRNA-1:cds;Parent=Msa1245820-mRNA-1 |
| chr8_2 | CDS | 36038384 | 36038548 | 36038384 | ID=Msa1245820-mRNA-1:cds;Parent=Msa1245820-mRNA-1 |
| chr8_2 | CDS | 36038232 | 36038279 | 36038232 | ID=Msa1245820-mRNA-1:cds;Parent=Msa1245820-mRNA-1 |
| chr8_2 | CDS | 36037909 | 36038079 | 36037909 | ID=Msa1245820-mRNA-1:cds;Parent=Msa1245820-mRNA-1 |
| chr8_2 | CDS | 36037382 | 36037494 | 36037382 | ID=Msa1245820-mRNA-1:cds;Parent=Msa1245820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
