AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177130 MtrunA17_Chr8g0347091 95.092 163 8 0 1 163 131 293 1.73e-114 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177130 AT3G61730.1 60.847 189 74 0 1 189 171 359 1.95e-81 246
Msa1177130 AT5G36000.1 57.143 189 81 0 1 189 167 355 3.10e-77 235
Msa1177130 AT3G62500.1 48.765 162 62 3 1 162 180 320 2.67e-42 145
Msa1177130 AT3G62500.2 48.765 162 62 3 1 162 180 320 2.82e-42 146

Find 49 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTCACGGTTGTTGCTTTC+TGG 0.121172 8_1:+9441585 Msa1177130:CDS
CTCTGTGAAGACTACGAAAA+TGG 0.226003 8_1:+9441983 Msa1177130:CDS
GATATCAAGAAACGAGCTTA+TGG 0.282438 8_1:+9442037 Msa1177130:CDS
GTACCAGCAATCCAGATTCC+AGG 0.388870 8_1:-9441619 Msa1177120:intron
AAACCTGGAATCTGGATTGC+TGG 0.401140 8_1:+9441616 Msa1177130:CDS
ACAACATTAAACCTGGAATC+TGG 0.402861 8_1:+9441608 Msa1177130:CDS
ATGAAAAGCAATCATGGTCT+TGG 0.408754 8_1:-9442574 Msa1177120:intron
TTTGATTACAAGTCATGGAT+TGG 0.411304 8_1:+9442531 Msa1177130:CDS
ATATCAAGAAACGAGCTTAT+GGG 0.412617 8_1:+9442038 Msa1177130:CDS
GGATTGGGAAGGATAATTAC+TGG 0.420053 8_1:+9442547 Msa1177130:CDS
AAGACTACGAAAATGGGAAC+TGG 0.425872 8_1:+9441990 Msa1177130:CDS
CCAAGCTATGAGGGCAGGAC+CGG 0.453746 8_1:+9443295 Msa1177130:CDS
TTGATTACAAGTCATGGATT+GGG 0.468371 8_1:+9442532 Msa1177130:CDS
TCTGTGAAGACTACGAAAAT+GGG 0.468614 8_1:+9441984 Msa1177130:CDS
TGCTGCATGAAAAGCAATCA+TGG 0.479901 8_1:-9442580 Msa1177120:intron
GTTAAAGAAAGAAGAAAGCA+TGG 0.485219 8_1:+9441549 Msa1177130:CDS
CAAGTATTGAGGTCACAAAC+CGG 0.486887 8_1:-9441762 Msa1177120:intron
AAACGAGCTTATGGGGCTGC+TGG 0.488804 8_1:+9442046 Msa1177130:CDS
CGGTATTTGATTACAAGTCA+TGG 0.490207 8_1:+9442526 Msa1177130:CDS
CCGGTCCTGCCCTCATAGCT+TGG 0.493687 8_1:-9443295 Msa1177120:intron
CTGGCGAGTTCTTCTACGTC+TGG 0.501579 8_1:+9442091 Msa1177130:CDS
TCTGCAGCTTGTGCGATGCC+CGG 0.502062 8_1:+9441743 Msa1177130:CDS
TCTTCTTTCTTTAACTCCCC+CGG 0.510064 8_1:-9441541 Msa1177120:intron
ATGTGAAGTACCAAGCTATG+AGG 0.516901 8_1:+9443285 Msa1177130:CDS
ACTAATTTACAAGAAAATCA+AGG 0.528332 8_1:+9442612 Msa1177130:CDS
AATTACCATCACAAGTATTG+AGG 0.538205 8_1:-9441773 Msa1177120:intron
TATAGGAACAATGCAGACAT+TGG 0.539902 8_1:+9441937 Msa1177130:intron
AACTGGGATTACGAGGTTGT+AGG 0.542235 8_1:+9442007 Msa1177130:CDS
TGAAAAGCAATCATGGTCTT+GGG 0.544175 8_1:-9442573 Msa1177120:intron
TTTCTGGACAACATTAAACC+TGG 0.556196 8_1:+9441601 Msa1177130:CDS
CAATGCAGACATTGGATGCA+AGG 0.559581 8_1:+9441945 Msa1177130:CDS
CAAGCTATGAGGGCAGGACC+GGG 0.564131 8_1:+9443296 Msa1177130:CDS
AAGTACCAAGCTATGAGGGC+AGG 0.567054 8_1:+9443290 Msa1177130:CDS
GAGGGCCACTGAAGAATCAA+AGG 0.570525 8_1:-9441497 Msa1177120:intron
TGTGAAGTACCAAGCTATGA+GGG 0.584398 8_1:+9443286 Msa1177130:CDS
TATCAAGAAACGAGCTTATG+GGG 0.585752 8_1:+9442039 Msa1177130:CDS
CTATCAGATTGGATGCGCAT+CGG 0.586986 8_1:+9441466 None:intergenic
CAGACGTAGAAGAACTCGCC+AGG 0.599890 8_1:-9442090 Msa1177120:intron
AAGTATTGAGGTCACAAACC+GGG 0.600506 8_1:-9441761 Msa1177120:intron
AATTCAGTCTCTCTGTCAAG+AGG 0.606737 8_1:-9441516 Msa1177120:intron
TGTGACCTCAATACTTGTGA+TGG 0.607442 8_1:+9441768 Msa1177130:CDS
GAAACTATGTTGAAGACTCA+CGG 0.621215 8_1:+9441571 Msa1177130:CDS
ATTCAGTCTCTCTGTCAAGA+GGG 0.624908 8_1:-9441515 Msa1177120:intron
TTACAAGTCATGGATTGGGA+AGG 0.625946 8_1:+9442536 Msa1177130:CDS
GCTATGAGGGCAGGACCGGG+TGG 0.630925 8_1:+9443299 Msa1177130:CDS
CAGCTGCTGAGAGATTCTGA+TGG 0.636966 8_1:-9443333 Msa1177120:intron
AGACTACGAAAATGGGAACT+GGG 0.645326 8_1:+9441991 Msa1177130:CDS
ATGGAAACAACTTCTCCACC+CGG 0.654340 8_1:-9443314 Msa1177120:intron
AAATGGGAACTGGGATTACG+AGG 0.675337 8_1:+9442000 Msa1177130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTAATCTTTAAATTAAA+TGG + chr8_1:9442500-9442519 Msa1177130:intron 10.0%
!! TATATAAAGAAAAAAACAAT+TGG - chr8_1:9443210-9443229 Msa1177120:intron 10.0%
!!! GTTTTAATCTTTAAATTAAA+TGG + chr8_1:9442500-9442519 Msa1177130:intron 10.0%
!! TATATAAAGAAAAAAACAAT+TGG - chr8_1:9443210-9443229 Msa1177120:intron 10.0%
!!! TTAATTAAGTATTGGAAATT+TGG - chr8_1:9443015-9443034 Msa1177120:intron 15.0%
!!! TTAATTAAGTATTGGAAATT+TGG - chr8_1:9443015-9443034 Msa1177120:intron 15.0%
!! CTTAAAGAAAAACATTAACA+AGG - chr8_1:9442158-9442177 Msa1177120:intron 20.0%
!! AGAGTAGAAACATATATATA+TGG + chr8_1:9442240-9442259 Msa1177130:intron 20.0%
!!! TTTTGAAATTAATTTGTTCC+TGG - chr8_1:9442340-9442359 Msa1177120:intron 20.0%
!! ACTAATTTACAAGAAAATCA+AGG + chr8_1:9442612-9442631 Msa1177130:CDS 20.0%
!!! TTTTACTGATTTGTTTGTTT+TGG - chr8_1:9442756-9442775 Msa1177120:intron 20.0%
!! AAATAGAATGGTAAACAAAT+TGG - chr8_1:9442915-9442934 Msa1177120:intron 20.0%
!! GCTTGTATTGAAAAATAAAA+TGG - chr8_1:9443257-9443276 Msa1177120:intron 20.0%
!!! TTTTATTTTTCAATACAAGC+AGG + chr8_1:9443257-9443276 Msa1177130:intron 20.0%
!! CTTAAAGAAAAACATTAACA+AGG - chr8_1:9442158-9442177 Msa1177120:intron 20.0%
!! AGAGTAGAAACATATATATA+TGG + chr8_1:9442240-9442259 Msa1177130:intron 20.0%
!!! TTTTGAAATTAATTTGTTCC+TGG - chr8_1:9442340-9442359 Msa1177120:intron 20.0%
!! ACTAATTTACAAGAAAATCA+AGG + chr8_1:9442612-9442631 Msa1177130:CDS 20.0%
!!! TTTTACTGATTTGTTTGTTT+TGG - chr8_1:9442756-9442775 Msa1177120:intron 20.0%
!! AAATAGAATGGTAAACAAAT+TGG - chr8_1:9442915-9442934 Msa1177120:intron 20.0%
!! GCTTGTATTGAAAAATAAAA+TGG - chr8_1:9443257-9443276 Msa1177120:intron 20.0%
!!! TTTTATTTTTCAATACAAGC+AGG + chr8_1:9443257-9443276 Msa1177130:intron 20.0%
! GTTATATTGTCAAAGATAAC+TGG - chr8_1:9441648-9441667 Msa1177120:intron 25.0%
!! TGAATTATTCATGGTGTTAA+GGG - chr8_1:9441827-9441846 Msa1177120:intron 25.0%
!! ATGAATTATTCATGGTGTTA+AGG - chr8_1:9441828-9441847 Msa1177120:intron 25.0%
!!! CTTTTTACCAGTTTAAGTTA+AGG + chr8_1:9442271-9442290 Msa1177130:intron 25.0%
! ATCTTTAAATTAAATGGCAG+CGG + chr8_1:9442506-9442525 Msa1177130:intron 25.0%
! TTTGTACTTATTCTTATAGC+AGG - chr8_1:9442697-9442716 Msa1177120:intron 25.0%
! GACTCAATAAAAATCTGTAT+TGG - chr8_1:9442809-9442828 Msa1177120:intron 25.0%
!! AAATTTGGAAGAGTTAGTTT+GGG - chr8_1:9443000-9443019 Msa1177120:intron 25.0%
! TGTGGAGTTTAATTAAGTAT+TGG - chr8_1:9443023-9443042 Msa1177120:intron 25.0%
! TATCCAAAAGAAGAAGATTT+GGG - chr8_1:9443109-9443128 Msa1177120:intron 25.0%
! TTATCCAAAAGAAGAAGATT+TGG - chr8_1:9443110-9443129 Msa1177120:intron 25.0%
! GTTATATTGTCAAAGATAAC+TGG - chr8_1:9441648-9441667 Msa1177120:intron 25.0%
!! TGAATTATTCATGGTGTTAA+GGG - chr8_1:9441827-9441846 Msa1177120:intron 25.0%
!! ATGAATTATTCATGGTGTTA+AGG - chr8_1:9441828-9441847 Msa1177120:intron 25.0%
!!! CTTTTTACCAGTTTAAGTTA+AGG + chr8_1:9442271-9442290 Msa1177130:intron 25.0%
! ATCTTTAAATTAAATGGCAG+CGG + chr8_1:9442506-9442525 Msa1177130:intron 25.0%
! TTTGTACTTATTCTTATAGC+AGG - chr8_1:9442697-9442716 Msa1177120:intron 25.0%
! GACTCAATAAAAATCTGTAT+TGG - chr8_1:9442809-9442828 Msa1177120:intron 25.0%
!! AAATTTGGAAGAGTTAGTTT+GGG - chr8_1:9443000-9443019 Msa1177120:intron 25.0%
! TGTGGAGTTTAATTAAGTAT+TGG - chr8_1:9443023-9443042 Msa1177120:intron 25.0%
! TATCCAAAAGAAGAAGATTT+GGG - chr8_1:9443109-9443128 Msa1177120:intron 25.0%
! TTATCCAAAAGAAGAAGATT+TGG - chr8_1:9443110-9443129 Msa1177120:intron 25.0%
! TTTTTCCTTTGATTCTTCAG+TGG + chr8_1:9441492-9441511 Msa1177130:CDS 30.0%
GTTAAAGAAAGAAGAAAGCA+TGG + chr8_1:9441549-9441568 Msa1177130:CDS 30.0%
! AATTACCATCACAAGTATTG+AGG - chr8_1:9441776-9441795 Msa1177120:intron 30.0%
AAGGGATATACAAAACTCAT+TGG - chr8_1:9441809-9441828 Msa1177120:intron 30.0%
AACCACTGATGAATTATTCA+TGG - chr8_1:9441836-9441855 Msa1177120:intron 30.0%
ATATCAAGAAACGAGCTTAT+GGG + chr8_1:9442038-9442057 Msa1177130:CDS 30.0%
AATGACATGACATTAGATTG+TGG - chr8_1:9442193-9442212 Msa1177120:intron 30.0%
AATGAATGTATAGATAGTCC+AGG + chr8_1:9442319-9442338 Msa1177130:intron 30.0%
TAGTAACTATCTTCTTGGAA+GGG - chr8_1:9442450-9442469 Msa1177120:intron 30.0%
TTAGTAACTATCTTCTTGGA+AGG - chr8_1:9442451-9442470 Msa1177120:intron 30.0%
GAACTTAGTAACTATCTTCT+TGG - chr8_1:9442455-9442474 Msa1177120:intron 30.0%
AGAAGATAGTTACTAAGTTC+TGG + chr8_1:9442455-9442474 Msa1177130:intron 30.0%
TTTGATTACAAGTCATGGAT+TGG + chr8_1:9442531-9442550 Msa1177130:CDS 30.0%
TTGATTACAAGTCATGGATT+GGG + chr8_1:9442532-9442551 Msa1177130:CDS 30.0%
TTACTTCAGTAATTGAGTCA+GGG - chr8_1:9442663-9442682 Msa1177120:intron 30.0%
TTTACTTCAGTAATTGAGTC+AGG - chr8_1:9442664-9442683 Msa1177120:intron 30.0%
!!! GATTTGTTTGTTTTGGTAAC+TGG - chr8_1:9442749-9442768 Msa1177120:intron 30.0%
GAATCAATTGTTGTAGCATA+GGG - chr8_1:9442783-9442802 Msa1177120:intron 30.0%
TGAATCAATTGTTGTAGCAT+AGG - chr8_1:9442784-9442803 Msa1177120:intron 30.0%
AATGGTAAACAAATTGGATG+GGG - chr8_1:9442909-9442928 Msa1177120:intron 30.0%
GAATGGTAAACAAATTGGAT+GGG - chr8_1:9442910-9442929 Msa1177120:intron 30.0%
AGAATGGTAAACAAATTGGA+TGG - chr8_1:9442911-9442930 Msa1177120:intron 30.0%
!! ATTCAGGTATTGGAATAGAA+GGG - chr8_1:9442964-9442983 Msa1177120:intron 30.0%
!! TATTCAGGTATTGGAATAGA+AGG - chr8_1:9442965-9442984 Msa1177120:intron 30.0%
GAGAAATGTTATTCAGGTAT+TGG - chr8_1:9442974-9442993 Msa1177120:intron 30.0%
GAAATTTGGAAGAGTTAGTT+TGG - chr8_1:9443001-9443020 Msa1177120:intron 30.0%
! TGAATTAGCTTGAATAGTTG+TGG - chr8_1:9443041-9443060 Msa1177120:intron 30.0%
! TTTTTCCTTTGATTCTTCAG+TGG + chr8_1:9441492-9441511 Msa1177130:CDS 30.0%
GTTAAAGAAAGAAGAAAGCA+TGG + chr8_1:9441549-9441568 Msa1177130:CDS 30.0%
! AATTACCATCACAAGTATTG+AGG - chr8_1:9441776-9441795 Msa1177120:intron 30.0%
AAGGGATATACAAAACTCAT+TGG - chr8_1:9441809-9441828 Msa1177120:intron 30.0%
AACCACTGATGAATTATTCA+TGG - chr8_1:9441836-9441855 Msa1177120:intron 30.0%
ATATCAAGAAACGAGCTTAT+GGG + chr8_1:9442038-9442057 Msa1177130:CDS 30.0%
AATGACATGACATTAGATTG+TGG - chr8_1:9442193-9442212 Msa1177120:intron 30.0%
AATGAATGTATAGATAGTCC+AGG + chr8_1:9442319-9442338 Msa1177130:intron 30.0%
TAGTAACTATCTTCTTGGAA+GGG - chr8_1:9442450-9442469 Msa1177120:intron 30.0%
TTAGTAACTATCTTCTTGGA+AGG - chr8_1:9442451-9442470 Msa1177120:intron 30.0%
GAACTTAGTAACTATCTTCT+TGG - chr8_1:9442455-9442474 Msa1177120:intron 30.0%
AGAAGATAGTTACTAAGTTC+TGG + chr8_1:9442455-9442474 Msa1177130:intron 30.0%
TTTGATTACAAGTCATGGAT+TGG + chr8_1:9442531-9442550 Msa1177130:CDS 30.0%
TTGATTACAAGTCATGGATT+GGG + chr8_1:9442532-9442551 Msa1177130:CDS 30.0%
TTACTTCAGTAATTGAGTCA+GGG - chr8_1:9442663-9442682 Msa1177120:intron 30.0%
TTTACTTCAGTAATTGAGTC+AGG - chr8_1:9442664-9442683 Msa1177120:intron 30.0%
!!! GATTTGTTTGTTTTGGTAAC+TGG - chr8_1:9442749-9442768 Msa1177120:intron 30.0%
GAATCAATTGTTGTAGCATA+GGG - chr8_1:9442783-9442802 Msa1177120:intron 30.0%
TGAATCAATTGTTGTAGCAT+AGG - chr8_1:9442784-9442803 Msa1177120:intron 30.0%
AATGGTAAACAAATTGGATG+GGG - chr8_1:9442909-9442928 Msa1177120:intron 30.0%
GAATGGTAAACAAATTGGAT+GGG - chr8_1:9442910-9442929 Msa1177120:intron 30.0%
AGAATGGTAAACAAATTGGA+TGG - chr8_1:9442911-9442930 Msa1177120:intron 30.0%
!! ATTCAGGTATTGGAATAGAA+GGG - chr8_1:9442964-9442983 Msa1177120:intron 30.0%
!! TATTCAGGTATTGGAATAGA+AGG - chr8_1:9442965-9442984 Msa1177120:intron 30.0%
GAGAAATGTTATTCAGGTAT+TGG - chr8_1:9442974-9442993 Msa1177120:intron 30.0%
GAAATTTGGAAGAGTTAGTT+TGG - chr8_1:9443001-9443020 Msa1177120:intron 30.0%
! TGAATTAGCTTGAATAGTTG+TGG - chr8_1:9443041-9443060 Msa1177120:intron 30.0%
GAAACTATGTTGAAGACTCA+CGG + chr8_1:9441571-9441590 Msa1177130:CDS 35.0%
TTTCTGGACAACATTAAACC+TGG + chr8_1:9441601-9441620 Msa1177130:CDS 35.0%
ACAACATTAAACCTGGAATC+TGG + chr8_1:9441608-9441627 Msa1177130:CDS 35.0%
CACCATGAATAATTCATCAG+TGG + chr8_1:9441831-9441850 Msa1177130:intron 35.0%
! GTTACTGTTTTGTACTGCAA+GGG + chr8_1:9441853-9441872 Msa1177130:intron 35.0%
GGGTTTGCGTTAGAATAATA+TGG + chr8_1:9441873-9441892 Msa1177130:intron 35.0%
CATGTTTCTCCTGCTTATAT+AGG + chr8_1:9441920-9441939 Msa1177130:intron 35.0%
TGCATTGTTCCTATATAAGC+AGG - chr8_1:9441932-9441951 Msa1177120:intron 35.0%
TATAGGAACAATGCAGACAT+TGG + chr8_1:9441937-9441956 Msa1177130:intron 35.0%
TCTGTGAAGACTACGAAAAT+GGG + chr8_1:9441984-9442003 Msa1177130:CDS 35.0%
GATATCAAGAAACGAGCTTA+TGG + chr8_1:9442037-9442056 Msa1177130:CDS 35.0%
TATCAAGAAACGAGCTTATG+GGG + chr8_1:9442039-9442058 Msa1177130:CDS 35.0%
CAGGTGTTTCACATCAAAAA+TGG - chr8_1:9442074-9442093 Msa1177120:intron 35.0%
! CATTTTTGATGTGAAACACC+TGG + chr8_1:9442072-9442091 Msa1177130:CDS 35.0%
TGCGTAACCTTAACTTAAAC+TGG - chr8_1:9442281-9442300 Msa1177120:intron 35.0%
CGGTATTTGATTACAAGTCA+TGG + chr8_1:9442526-9442545 Msa1177130:CDS 35.0%
TGAAAAGCAATCATGGTCTT+GGG - chr8_1:9442576-9442595 Msa1177120:intron 35.0%
ATGAAAAGCAATCATGGTCT+TGG - chr8_1:9442577-9442596 Msa1177120:intron 35.0%
AGTTCCTTCATCTGTTATTG+CGG + chr8_1:9442864-9442883 Msa1177130:intron 35.0%
TTGAGGTTGGACAAATAGAA+TGG - chr8_1:9442927-9442946 Msa1177120:intron 35.0%
TATTGGAATAGAAGGGAAGT+TGG - chr8_1:9442957-9442976 Msa1177120:intron 35.0%
GGGAAAGAGAAATGTTATTC+AGG - chr8_1:9442980-9442999 Msa1177120:intron 35.0%
TACATGCTTATCTCAGTTGA+TGG - chr8_1:9443064-9443083 Msa1177120:intron 35.0%
! AGTCCCAAATCTTCTTCTTT+TGG + chr8_1:9443103-9443122 Msa1177130:intron 35.0%
GAAACTATGTTGAAGACTCA+CGG + chr8_1:9441571-9441590 Msa1177130:CDS 35.0%
TTTCTGGACAACATTAAACC+TGG + chr8_1:9441601-9441620 Msa1177130:CDS 35.0%
ACAACATTAAACCTGGAATC+TGG + chr8_1:9441608-9441627 Msa1177130:CDS 35.0%
CACCATGAATAATTCATCAG+TGG + chr8_1:9441831-9441850 Msa1177130:intron 35.0%
! GTTACTGTTTTGTACTGCAA+GGG + chr8_1:9441853-9441872 Msa1177130:intron 35.0%
GGGTTTGCGTTAGAATAATA+TGG + chr8_1:9441873-9441892 Msa1177130:intron 35.0%
CATGTTTCTCCTGCTTATAT+AGG + chr8_1:9441920-9441939 Msa1177130:intron 35.0%
TGCATTGTTCCTATATAAGC+AGG - chr8_1:9441932-9441951 Msa1177120:intron 35.0%
TATAGGAACAATGCAGACAT+TGG + chr8_1:9441937-9441956 Msa1177130:intron 35.0%
TCTGTGAAGACTACGAAAAT+GGG + chr8_1:9441984-9442003 Msa1177130:CDS 35.0%
GATATCAAGAAACGAGCTTA+TGG + chr8_1:9442037-9442056 Msa1177130:CDS 35.0%
TATCAAGAAACGAGCTTATG+GGG + chr8_1:9442039-9442058 Msa1177130:CDS 35.0%
CAGGTGTTTCACATCAAAAA+TGG - chr8_1:9442074-9442093 Msa1177120:intron 35.0%
! CATTTTTGATGTGAAACACC+TGG + chr8_1:9442072-9442091 Msa1177130:CDS 35.0%
TGCGTAACCTTAACTTAAAC+TGG - chr8_1:9442281-9442300 Msa1177120:intron 35.0%
CGGTATTTGATTACAAGTCA+TGG + chr8_1:9442526-9442545 Msa1177130:CDS 35.0%
TGAAAAGCAATCATGGTCTT+GGG - chr8_1:9442576-9442595 Msa1177120:intron 35.0%
ATGAAAAGCAATCATGGTCT+TGG - chr8_1:9442577-9442596 Msa1177120:intron 35.0%
AGTTCCTTCATCTGTTATTG+CGG + chr8_1:9442864-9442883 Msa1177130:intron 35.0%
TTGAGGTTGGACAAATAGAA+TGG - chr8_1:9442927-9442946 Msa1177120:intron 35.0%
TATTGGAATAGAAGGGAAGT+TGG - chr8_1:9442957-9442976 Msa1177120:intron 35.0%
GGGAAAGAGAAATGTTATTC+AGG - chr8_1:9442980-9442999 Msa1177120:intron 35.0%
TACATGCTTATCTCAGTTGA+TGG - chr8_1:9443064-9443083 Msa1177120:intron 35.0%
! AGTCCCAAATCTTCTTCTTT+TGG + chr8_1:9443103-9443122 Msa1177130:intron 35.0%
ATTCAGTCTCTCTGTCAAGA+GGG - chr8_1:9441518-9441537 Msa1177120:intron 40.0%
AATTCAGTCTCTCTGTCAAG+AGG - chr8_1:9441519-9441538 Msa1177120:intron 40.0%
! GACAGAGAGACTGAATTTTC+CGG + chr8_1:9441522-9441541 Msa1177130:CDS 40.0%
! ACAGAGAGACTGAATTTTCC+GGG + chr8_1:9441523-9441542 Msa1177130:CDS 40.0%
TCTTCTTTCTTTAACTCCCC+CGG - chr8_1:9441544-9441563 Msa1177120:intron 40.0%
!! AAGTATTGAGGTCACAAACC+GGG - chr8_1:9441764-9441783 Msa1177120:intron 40.0%
!! CAAGTATTGAGGTCACAAAC+CGG - chr8_1:9441765-9441784 Msa1177120:intron 40.0%
TGTGACCTCAATACTTGTGA+TGG + chr8_1:9441768-9441787 Msa1177130:CDS 40.0%
! GGTTACTGTTTTGTACTGCA+AGG + chr8_1:9441852-9441871 Msa1177130:intron 40.0%
! CATTTTCGTAGTCTTCACAG+AGG - chr8_1:9441985-9442004 Msa1177120:intron 40.0%
CTCTGTGAAGACTACGAAAA+TGG + chr8_1:9441983-9442002 Msa1177130:CDS 40.0%
AAGACTACGAAAATGGGAAC+TGG + chr8_1:9441990-9442009 Msa1177130:CDS 40.0%
AGACTACGAAAATGGGAACT+GGG + chr8_1:9441991-9442010 Msa1177130:CDS 40.0%
CTCCGAATGATTCTTGGTTT+GGG + chr8_1:9442372-9442391 Msa1177130:intron 40.0%
! TCCGAATGATTCTTGGTTTG+GGG + chr8_1:9442373-9442392 Msa1177130:intron 40.0%
TCCCCAAACCAAGAATCATT+CGG - chr8_1:9442377-9442396 Msa1177120:intron 40.0%
!! TTACAAGTCATGGATTGGGA+AGG + chr8_1:9442536-9442555 Msa1177130:CDS 40.0%
GGATTGGGAAGGATAATTAC+TGG + chr8_1:9442547-9442566 Msa1177130:CDS 40.0%
TGCTGCATGAAAAGCAATCA+TGG - chr8_1:9442583-9442602 Msa1177120:intron 40.0%
GTAACTGGTTAATATGCAGC+GGG - chr8_1:9442734-9442753 Msa1177120:intron 40.0%
GGTAACTGGTTAATATGCAG+CGG - chr8_1:9442735-9442754 Msa1177120:intron 40.0%
ATGAAGGAACTTGTCCTTCT+TGG - chr8_1:9442855-9442874 Msa1177120:intron 40.0%
AGAACCGCAATAACAGATGA+AGG - chr8_1:9442871-9442890 Msa1177120:intron 40.0%
TTATTGCGGTTCTGCAAAGT+CGG + chr8_1:9442878-9442897 Msa1177130:intron 40.0%
AGTTGGACATCAATTGAGGT+TGG - chr8_1:9442940-9442959 Msa1177120:intron 40.0%
! GATTTGGGACTGTAGTAGAT+TGG - chr8_1:9443094-9443113 Msa1177120:intron 40.0%
! ATGTGAAGTACCAAGCTATG+AGG + chr8_1:9443285-9443304 Msa1177130:CDS 40.0%
! TGTGAAGTACCAAGCTATGA+GGG + chr8_1:9443286-9443305 Msa1177130:CDS 40.0%
ATTCAGTCTCTCTGTCAAGA+GGG - chr8_1:9441518-9441537 Msa1177120:intron 40.0%
AATTCAGTCTCTCTGTCAAG+AGG - chr8_1:9441519-9441538 Msa1177120:intron 40.0%
! GACAGAGAGACTGAATTTTC+CGG + chr8_1:9441522-9441541 Msa1177130:CDS 40.0%
! ACAGAGAGACTGAATTTTCC+GGG + chr8_1:9441523-9441542 Msa1177130:CDS 40.0%
TCTTCTTTCTTTAACTCCCC+CGG - chr8_1:9441544-9441563 Msa1177120:intron 40.0%
!! AAGTATTGAGGTCACAAACC+GGG - chr8_1:9441764-9441783 Msa1177120:intron 40.0%
!! CAAGTATTGAGGTCACAAAC+CGG - chr8_1:9441765-9441784 Msa1177120:intron 40.0%
TGTGACCTCAATACTTGTGA+TGG + chr8_1:9441768-9441787 Msa1177130:CDS 40.0%
! GGTTACTGTTTTGTACTGCA+AGG + chr8_1:9441852-9441871 Msa1177130:intron 40.0%
! CATTTTCGTAGTCTTCACAG+AGG - chr8_1:9441985-9442004 Msa1177120:intron 40.0%
CTCTGTGAAGACTACGAAAA+TGG + chr8_1:9441983-9442002 Msa1177130:CDS 40.0%
AAGACTACGAAAATGGGAAC+TGG + chr8_1:9441990-9442009 Msa1177130:CDS 40.0%
AGACTACGAAAATGGGAACT+GGG + chr8_1:9441991-9442010 Msa1177130:CDS 40.0%
CTCCGAATGATTCTTGGTTT+GGG + chr8_1:9442372-9442391 Msa1177130:intron 40.0%
! TCCGAATGATTCTTGGTTTG+GGG + chr8_1:9442373-9442392 Msa1177130:intron 40.0%
TCCCCAAACCAAGAATCATT+CGG - chr8_1:9442377-9442396 Msa1177120:intron 40.0%
!! TTACAAGTCATGGATTGGGA+AGG + chr8_1:9442536-9442555 Msa1177130:CDS 40.0%
GGATTGGGAAGGATAATTAC+TGG + chr8_1:9442547-9442566 Msa1177130:CDS 40.0%
TGCTGCATGAAAAGCAATCA+TGG - chr8_1:9442583-9442602 Msa1177120:intron 40.0%
GTAACTGGTTAATATGCAGC+GGG - chr8_1:9442734-9442753 Msa1177120:intron 40.0%
GGTAACTGGTTAATATGCAG+CGG - chr8_1:9442735-9442754 Msa1177120:intron 40.0%
ATGAAGGAACTTGTCCTTCT+TGG - chr8_1:9442855-9442874 Msa1177120:intron 40.0%
AGAACCGCAATAACAGATGA+AGG - chr8_1:9442871-9442890 Msa1177120:intron 40.0%
TTATTGCGGTTCTGCAAAGT+CGG + chr8_1:9442878-9442897 Msa1177130:intron 40.0%
AGTTGGACATCAATTGAGGT+TGG - chr8_1:9442940-9442959 Msa1177120:intron 40.0%
! GATTTGGGACTGTAGTAGAT+TGG - chr8_1:9443094-9443113 Msa1177120:intron 40.0%
! ATGTGAAGTACCAAGCTATG+AGG + chr8_1:9443285-9443304 Msa1177130:CDS 40.0%
! TGTGAAGTACCAAGCTATGA+GGG + chr8_1:9443286-9443305 Msa1177130:CDS 40.0%
! CAGAGAGACTGAATTTTCCG+GGG + chr8_1:9441524-9441543 Msa1177130:CDS 45.0%
! AGAGAGACTGAATTTTCCGG+GGG + chr8_1:9441525-9441544 Msa1177130:CDS 45.0%
AAACCTGGAATCTGGATTGC+TGG + chr8_1:9441616-9441635 Msa1177130:CDS 45.0%
CAATGCAGACATTGGATGCA+AGG + chr8_1:9441945-9441964 Msa1177130:CDS 45.0%
AAATGGGAACTGGGATTACG+AGG + chr8_1:9442000-9442019 Msa1177130:CDS 45.0%
AACTGGGATTACGAGGTTGT+AGG + chr8_1:9442007-9442026 Msa1177130:CDS 45.0%
GTCAACTTACCAACAGTCAG+TGG + chr8_1:9442132-9442151 Msa1177130:intron 45.0%
! TTAACAAGGCCACTGACTGT+TGG - chr8_1:9442144-9442163 Msa1177120:intron 45.0%
TGAAGCCTCCGAATGATTCT+TGG + chr8_1:9442366-9442385 Msa1177130:intron 45.0%
CCAAACCAAGAATCATTCGG+AGG - chr8_1:9442374-9442393 Msa1177120:intron 45.0%
CCTCCGAATGATTCTTGGTT+TGG + chr8_1:9442371-9442390 Msa1177130:intron 45.0%
GGGAAGTTGGACATCAATTG+AGG - chr8_1:9442944-9442963 Msa1177120:intron 45.0%
TTGGGACTGTAGTAGATTGG+TGG - chr8_1:9443091-9443110 Msa1177120:intron 45.0%
ATGGAAACAACTTCTCCACC+CGG - chr8_1:9443317-9443336 Msa1177120:intron 45.0%
! CAGAGAGACTGAATTTTCCG+GGG + chr8_1:9441524-9441543 Msa1177130:CDS 45.0%
! AGAGAGACTGAATTTTCCGG+GGG + chr8_1:9441525-9441544 Msa1177130:CDS 45.0%
AAACCTGGAATCTGGATTGC+TGG + chr8_1:9441616-9441635 Msa1177130:CDS 45.0%
CAATGCAGACATTGGATGCA+AGG + chr8_1:9441945-9441964 Msa1177130:CDS 45.0%
AAATGGGAACTGGGATTACG+AGG + chr8_1:9442000-9442019 Msa1177130:CDS 45.0%
AACTGGGATTACGAGGTTGT+AGG + chr8_1:9442007-9442026 Msa1177130:CDS 45.0%
GTCAACTTACCAACAGTCAG+TGG + chr8_1:9442132-9442151 Msa1177130:intron 45.0%
! TTAACAAGGCCACTGACTGT+TGG - chr8_1:9442144-9442163 Msa1177120:intron 45.0%
TGAAGCCTCCGAATGATTCT+TGG + chr8_1:9442366-9442385 Msa1177130:intron 45.0%
CCAAACCAAGAATCATTCGG+AGG - chr8_1:9442374-9442393 Msa1177120:intron 45.0%
CCTCCGAATGATTCTTGGTT+TGG + chr8_1:9442371-9442390 Msa1177130:intron 45.0%
GGGAAGTTGGACATCAATTG+AGG - chr8_1:9442944-9442963 Msa1177120:intron 45.0%
TTGGGACTGTAGTAGATTGG+TGG - chr8_1:9443091-9443110 Msa1177120:intron 45.0%
ATGGAAACAACTTCTCCACC+CGG - chr8_1:9443317-9443336 Msa1177120:intron 45.0%
GAGGGCCACTGAAGAATCAA+AGG - chr8_1:9441500-9441519 Msa1177120:intron 50.0%
!! GACTCACGGTTGTTGCTTTC+TGG + chr8_1:9441585-9441604 Msa1177130:CDS 50.0%
GTACCAGCAATCCAGATTCC+AGG - chr8_1:9441622-9441641 Msa1177120:intron 50.0%
GTACACACACTGGAGGCAAA+GGG - chr8_1:9442833-9442852 Msa1177120:intron 50.0%
CTTCTTGGTACACACACTGG+AGG - chr8_1:9442840-9442859 Msa1177120:intron 50.0%
CTCCAGTGTGTGTACCAAGA+AGG + chr8_1:9442838-9442857 Msa1177130:intron 50.0%
GTCCTTCTTGGTACACACAC+TGG - chr8_1:9442843-9442862 Msa1177120:intron 50.0%
AAGTACCAAGCTATGAGGGC+AGG + chr8_1:9443290-9443309 Msa1177130:CDS 50.0%
CAGCTGCTGAGAGATTCTGA+TGG - chr8_1:9443336-9443355 Msa1177120:intron 50.0%
GAGGGCCACTGAAGAATCAA+AGG - chr8_1:9441500-9441519 Msa1177120:intron 50.0%
!! GACTCACGGTTGTTGCTTTC+TGG + chr8_1:9441585-9441604 Msa1177130:CDS 50.0%
GTACCAGCAATCCAGATTCC+AGG - chr8_1:9441622-9441641 Msa1177120:intron 50.0%
GTACACACACTGGAGGCAAA+GGG - chr8_1:9442833-9442852 Msa1177120:intron 50.0%
CTTCTTGGTACACACACTGG+AGG - chr8_1:9442840-9442859 Msa1177120:intron 50.0%
CTCCAGTGTGTGTACCAAGA+AGG + chr8_1:9442838-9442857 Msa1177130:intron 50.0%
GTCCTTCTTGGTACACACAC+TGG - chr8_1:9442843-9442862 Msa1177120:intron 50.0%
AAGTACCAAGCTATGAGGGC+AGG + chr8_1:9443290-9443309 Msa1177130:CDS 50.0%
CAGCTGCTGAGAGATTCTGA+TGG - chr8_1:9443336-9443355 Msa1177120:intron 50.0%
AAACGAGCTTATGGGGCTGC+TGG + chr8_1:9442046-9442065 Msa1177130:CDS 55.0%
CAGACGTAGAAGAACTCGCC+AGG - chr8_1:9442093-9442112 Msa1177120:intron 55.0%
CTGGCGAGTTCTTCTACGTC+TGG + chr8_1:9442091-9442110 Msa1177130:CDS 55.0%
GGTACACACACTGGAGGCAA+AGG - chr8_1:9442834-9442853 Msa1177120:intron 55.0%
AAACGAGCTTATGGGGCTGC+TGG + chr8_1:9442046-9442065 Msa1177130:CDS 55.0%
CAGACGTAGAAGAACTCGCC+AGG - chr8_1:9442093-9442112 Msa1177120:intron 55.0%
CTGGCGAGTTCTTCTACGTC+TGG + chr8_1:9442091-9442110 Msa1177130:CDS 55.0%
GGTACACACACTGGAGGCAA+AGG - chr8_1:9442834-9442853 Msa1177120:intron 55.0%
TCTGCAGCTTGTGCGATGCC+CGG + chr8_1:9441743-9441762 Msa1177130:CDS 60.0%
CCAAGCTATGAGGGCAGGAC+CGG + chr8_1:9443295-9443314 Msa1177130:CDS 60.0%
CAAGCTATGAGGGCAGGACC+GGG + chr8_1:9443296-9443315 Msa1177130:CDS 60.0%
TCTGCAGCTTGTGCGATGCC+CGG + chr8_1:9441743-9441762 Msa1177130:CDS 60.0%
CCAAGCTATGAGGGCAGGAC+CGG + chr8_1:9443295-9443314 Msa1177130:CDS 60.0%
CAAGCTATGAGGGCAGGACC+GGG + chr8_1:9443296-9443315 Msa1177130:CDS 60.0%
CCGGTCCTGCCCTCATAGCT+TGG - chr8_1:9443298-9443317 Msa1177120:intron 65.0%
CCGGTCCTGCCCTCATAGCT+TGG - chr8_1:9443298-9443317 Msa1177120:intron 65.0%
GCTATGAGGGCAGGACCGGG+TGG + chr8_1:9443299-9443318 Msa1177130:CDS 70.0%
GCTATGAGGGCAGGACCGGG+TGG + chr8_1:9443299-9443318 Msa1177130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 9441478 9443361 9441478 ID=Msa1177130;Name=Msa1177130
chr8_1 mRNA 9441478 9443361 9441478 ID=Msa1177130-mRNA-1;Parent=Msa1177130;Name=Msa1177130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.8|1|1|5|0|189
chr8_1 exon 9441478 9441637 9441478 ID=Msa1177130-mRNA-1:exon:3176;Parent=Msa1177130-mRNA-1
chr8_1 exon 9441742 9441789 9441742 ID=Msa1177130-mRNA-1:exon:3177;Parent=Msa1177130-mRNA-1
chr8_1 exon 9441942 9442112 9441942 ID=Msa1177130-mRNA-1:exon:3178;Parent=Msa1177130-mRNA-1
chr8_1 exon 9442526 9442633 9442526 ID=Msa1177130-mRNA-1:exon:3179;Parent=Msa1177130-mRNA-1
chr8_1 exon 9443279 9443361 9443279 ID=Msa1177130-mRNA-1:exon:3180;Parent=Msa1177130-mRNA-1
chr8_1 CDS 9441478 9441637 9441478 ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1
chr8_1 CDS 9441742 9441789 9441742 ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1
chr8_1 CDS 9441942 9442112 9441942 ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1
chr8_1 CDS 9442526 9442633 9442526 ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1
chr8_1 CDS 9443279 9443361 9443279 ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1
Gene Sequence

>Msa1177130

ATGCGCATCGGTGCTTTTTCCTTTGATTCTTCAGTGGCCCTCTTGACAGAGAGACTGAATTTTCCGGGGGAGTTAAAGAAAGAAGAAAGCATGGAAACTATGTTGAAGACTCACGGTTGTTGCTTTCTGGACAACATTAAACCTGGAATCTGGATTGCTGATCTGCAGCTTGTGCGATGCCCGGTTTGTGACCTCAATACTTGTGATGGAACAATGCAGACATTGGATGCAAGGCATATAGAGCTGTTCCTCTGTGAAGACTACGAAAATGGGAACTGGGATTACGAGGTTGTAGGATCTCATGATATCAAGAAACGAGCTTATGGGGCTGCTGGCTCCATTTTTGATGTGAAACACCTGGCGAGTTCTTCTACGTCTGCGGTATTTGATTACAAGTCATGGATTGGGAAGGATAATTACTGGCAACCCAAGACCATGATTGCTTTTCATGCAGCAGCTGTGAACACTAATTTACAAGAAAATCAAGGTCTTCATGTGAAGTACCAAGCTATGAGGGCAGGACCGGGTGGAGAAGTTGTTTCCATCAGAATCTCTCAGCAGCTGCTGTGA

Protein sequence

>Msa1177130

MRIGAFSFDSSVALLTERLNFPGELKKEESMETMLKTHGCCFLDNIKPGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLCEDYENGNWDYEVVGSHDIKKRAYGAAGSIFDVKHLASSSTSAVFDYKSWIGKDNYWQPKTMIAFHAAAVNTNLQENQGLHVKYQAMRAGPGGEVVSIRISQQLL*