Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1177130 | XP_013444640.2 | 95.238 | 189 | 9 | 0 | 1 | 189 | 131 | 319 | 5.51e-130 | 377 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1177130 | sp|Q9M365|FB331_ARATH | 60.847 | 189 | 74 | 0 | 1 | 189 | 171 | 359 | 1.92e-80 | 246 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0792290 | Msa1177130 | 0.904501 | 1.149556e-79 | -8.615850e-47 |
Msa1079100 | Msa1177130 | 0.808644 | 2.798370e-50 | -8.615850e-47 |
Msa1124010 | Msa1177130 | 0.803380 | 3.583371e-49 | -8.615850e-47 |
Msa1177100 | Msa1177130 | 0.821231 | 4.506903e-53 | -8.615850e-47 |
Msa1177130 | Msa1177160 | 0.907053 | 7.671037e-81 | -8.615850e-47 |
Msa1177130 | Msa1245820 | 0.889424 | 2.452036e-73 | -8.615850e-47 |
Msa1177130 | Msa1316930 | 0.894945 | 1.529013e-75 | -8.615850e-47 |
Msa1177130 | Msa1316950 | 0.861485 | 9.928953e-64 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1177130 | MtrunA17_Chr8g0347091 | 95.092 | 163 | 8 | 0 | 1 | 163 | 131 | 293 | 1.73e-114 | 327 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1177130 | AT3G61730.1 | 60.847 | 189 | 74 | 0 | 1 | 189 | 171 | 359 | 1.95e-81 | 246 |
Msa1177130 | AT5G36000.1 | 57.143 | 189 | 81 | 0 | 1 | 189 | 167 | 355 | 3.10e-77 | 235 |
Msa1177130 | AT3G62500.1 | 48.765 | 162 | 62 | 3 | 1 | 162 | 180 | 320 | 2.67e-42 | 145 |
Msa1177130 | AT3G62500.2 | 48.765 | 162 | 62 | 3 | 1 | 162 | 180 | 320 | 2.82e-42 | 146 |
Find 49 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 8_1:+9441585 | Msa1177130:CDS |
CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 8_1:+9441983 | Msa1177130:CDS |
GATATCAAGAAACGAGCTTA+TGG | 0.282438 | 8_1:+9442037 | Msa1177130:CDS |
GTACCAGCAATCCAGATTCC+AGG | 0.388870 | 8_1:-9441619 | Msa1177120:intron |
AAACCTGGAATCTGGATTGC+TGG | 0.401140 | 8_1:+9441616 | Msa1177130:CDS |
ACAACATTAAACCTGGAATC+TGG | 0.402861 | 8_1:+9441608 | Msa1177130:CDS |
ATGAAAAGCAATCATGGTCT+TGG | 0.408754 | 8_1:-9442574 | Msa1177120:intron |
TTTGATTACAAGTCATGGAT+TGG | 0.411304 | 8_1:+9442531 | Msa1177130:CDS |
ATATCAAGAAACGAGCTTAT+GGG | 0.412617 | 8_1:+9442038 | Msa1177130:CDS |
GGATTGGGAAGGATAATTAC+TGG | 0.420053 | 8_1:+9442547 | Msa1177130:CDS |
AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 8_1:+9441990 | Msa1177130:CDS |
CCAAGCTATGAGGGCAGGAC+CGG | 0.453746 | 8_1:+9443295 | Msa1177130:CDS |
TTGATTACAAGTCATGGATT+GGG | 0.468371 | 8_1:+9442532 | Msa1177130:CDS |
TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 8_1:+9441984 | Msa1177130:CDS |
TGCTGCATGAAAAGCAATCA+TGG | 0.479901 | 8_1:-9442580 | Msa1177120:intron |
GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 8_1:+9441549 | Msa1177130:CDS |
CAAGTATTGAGGTCACAAAC+CGG | 0.486887 | 8_1:-9441762 | Msa1177120:intron |
AAACGAGCTTATGGGGCTGC+TGG | 0.488804 | 8_1:+9442046 | Msa1177130:CDS |
CGGTATTTGATTACAAGTCA+TGG | 0.490207 | 8_1:+9442526 | Msa1177130:CDS |
CCGGTCCTGCCCTCATAGCT+TGG | 0.493687 | 8_1:-9443295 | Msa1177120:intron |
CTGGCGAGTTCTTCTACGTC+TGG | 0.501579 | 8_1:+9442091 | Msa1177130:CDS |
TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 8_1:+9441743 | Msa1177130:CDS |
TCTTCTTTCTTTAACTCCCC+CGG | 0.510064 | 8_1:-9441541 | Msa1177120:intron |
ATGTGAAGTACCAAGCTATG+AGG | 0.516901 | 8_1:+9443285 | Msa1177130:CDS |
ACTAATTTACAAGAAAATCA+AGG | 0.528332 | 8_1:+9442612 | Msa1177130:CDS |
AATTACCATCACAAGTATTG+AGG | 0.538205 | 8_1:-9441773 | Msa1177120:intron |
TATAGGAACAATGCAGACAT+TGG | 0.539902 | 8_1:+9441937 | Msa1177130:intron |
AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 8_1:+9442007 | Msa1177130:CDS |
TGAAAAGCAATCATGGTCTT+GGG | 0.544175 | 8_1:-9442573 | Msa1177120:intron |
TTTCTGGACAACATTAAACC+TGG | 0.556196 | 8_1:+9441601 | Msa1177130:CDS |
CAATGCAGACATTGGATGCA+AGG | 0.559581 | 8_1:+9441945 | Msa1177130:CDS |
CAAGCTATGAGGGCAGGACC+GGG | 0.564131 | 8_1:+9443296 | Msa1177130:CDS |
AAGTACCAAGCTATGAGGGC+AGG | 0.567054 | 8_1:+9443290 | Msa1177130:CDS |
GAGGGCCACTGAAGAATCAA+AGG | 0.570525 | 8_1:-9441497 | Msa1177120:intron |
TGTGAAGTACCAAGCTATGA+GGG | 0.584398 | 8_1:+9443286 | Msa1177130:CDS |
TATCAAGAAACGAGCTTATG+GGG | 0.585752 | 8_1:+9442039 | Msa1177130:CDS |
CTATCAGATTGGATGCGCAT+CGG | 0.586986 | 8_1:+9441466 | None:intergenic |
CAGACGTAGAAGAACTCGCC+AGG | 0.599890 | 8_1:-9442090 | Msa1177120:intron |
AAGTATTGAGGTCACAAACC+GGG | 0.600506 | 8_1:-9441761 | Msa1177120:intron |
AATTCAGTCTCTCTGTCAAG+AGG | 0.606737 | 8_1:-9441516 | Msa1177120:intron |
TGTGACCTCAATACTTGTGA+TGG | 0.607442 | 8_1:+9441768 | Msa1177130:CDS |
GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 8_1:+9441571 | Msa1177130:CDS |
ATTCAGTCTCTCTGTCAAGA+GGG | 0.624908 | 8_1:-9441515 | Msa1177120:intron |
TTACAAGTCATGGATTGGGA+AGG | 0.625946 | 8_1:+9442536 | Msa1177130:CDS |
GCTATGAGGGCAGGACCGGG+TGG | 0.630925 | 8_1:+9443299 | Msa1177130:CDS |
CAGCTGCTGAGAGATTCTGA+TGG | 0.636966 | 8_1:-9443333 | Msa1177120:intron |
AGACTACGAAAATGGGAACT+GGG | 0.645326 | 8_1:+9441991 | Msa1177130:CDS |
ATGGAAACAACTTCTCCACC+CGG | 0.654340 | 8_1:-9443314 | Msa1177120:intron |
AAATGGGAACTGGGATTACG+AGG | 0.675337 | 8_1:+9442000 | Msa1177130:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTTTAATCTTTAAATTAAA+TGG | + | chr8_1:9442500-9442519 | Msa1177130:intron | 10.0% |
!! | TATATAAAGAAAAAAACAAT+TGG | - | chr8_1:9443210-9443229 | Msa1177120:intron | 10.0% |
!!! | GTTTTAATCTTTAAATTAAA+TGG | + | chr8_1:9442500-9442519 | Msa1177130:intron | 10.0% |
!! | TATATAAAGAAAAAAACAAT+TGG | - | chr8_1:9443210-9443229 | Msa1177120:intron | 10.0% |
!!! | TTAATTAAGTATTGGAAATT+TGG | - | chr8_1:9443015-9443034 | Msa1177120:intron | 15.0% |
!!! | TTAATTAAGTATTGGAAATT+TGG | - | chr8_1:9443015-9443034 | Msa1177120:intron | 15.0% |
!! | CTTAAAGAAAAACATTAACA+AGG | - | chr8_1:9442158-9442177 | Msa1177120:intron | 20.0% |
!! | AGAGTAGAAACATATATATA+TGG | + | chr8_1:9442240-9442259 | Msa1177130:intron | 20.0% |
!!! | TTTTGAAATTAATTTGTTCC+TGG | - | chr8_1:9442340-9442359 | Msa1177120:intron | 20.0% |
!! | ACTAATTTACAAGAAAATCA+AGG | + | chr8_1:9442612-9442631 | Msa1177130:CDS | 20.0% |
!!! | TTTTACTGATTTGTTTGTTT+TGG | - | chr8_1:9442756-9442775 | Msa1177120:intron | 20.0% |
!! | AAATAGAATGGTAAACAAAT+TGG | - | chr8_1:9442915-9442934 | Msa1177120:intron | 20.0% |
!! | GCTTGTATTGAAAAATAAAA+TGG | - | chr8_1:9443257-9443276 | Msa1177120:intron | 20.0% |
!!! | TTTTATTTTTCAATACAAGC+AGG | + | chr8_1:9443257-9443276 | Msa1177130:intron | 20.0% |
!! | CTTAAAGAAAAACATTAACA+AGG | - | chr8_1:9442158-9442177 | Msa1177120:intron | 20.0% |
!! | AGAGTAGAAACATATATATA+TGG | + | chr8_1:9442240-9442259 | Msa1177130:intron | 20.0% |
!!! | TTTTGAAATTAATTTGTTCC+TGG | - | chr8_1:9442340-9442359 | Msa1177120:intron | 20.0% |
!! | ACTAATTTACAAGAAAATCA+AGG | + | chr8_1:9442612-9442631 | Msa1177130:CDS | 20.0% |
!!! | TTTTACTGATTTGTTTGTTT+TGG | - | chr8_1:9442756-9442775 | Msa1177120:intron | 20.0% |
!! | AAATAGAATGGTAAACAAAT+TGG | - | chr8_1:9442915-9442934 | Msa1177120:intron | 20.0% |
!! | GCTTGTATTGAAAAATAAAA+TGG | - | chr8_1:9443257-9443276 | Msa1177120:intron | 20.0% |
!!! | TTTTATTTTTCAATACAAGC+AGG | + | chr8_1:9443257-9443276 | Msa1177130:intron | 20.0% |
! | GTTATATTGTCAAAGATAAC+TGG | - | chr8_1:9441648-9441667 | Msa1177120:intron | 25.0% |
!! | TGAATTATTCATGGTGTTAA+GGG | - | chr8_1:9441827-9441846 | Msa1177120:intron | 25.0% |
!! | ATGAATTATTCATGGTGTTA+AGG | - | chr8_1:9441828-9441847 | Msa1177120:intron | 25.0% |
!!! | CTTTTTACCAGTTTAAGTTA+AGG | + | chr8_1:9442271-9442290 | Msa1177130:intron | 25.0% |
! | ATCTTTAAATTAAATGGCAG+CGG | + | chr8_1:9442506-9442525 | Msa1177130:intron | 25.0% |
! | TTTGTACTTATTCTTATAGC+AGG | - | chr8_1:9442697-9442716 | Msa1177120:intron | 25.0% |
! | GACTCAATAAAAATCTGTAT+TGG | - | chr8_1:9442809-9442828 | Msa1177120:intron | 25.0% |
!! | AAATTTGGAAGAGTTAGTTT+GGG | - | chr8_1:9443000-9443019 | Msa1177120:intron | 25.0% |
! | TGTGGAGTTTAATTAAGTAT+TGG | - | chr8_1:9443023-9443042 | Msa1177120:intron | 25.0% |
! | TATCCAAAAGAAGAAGATTT+GGG | - | chr8_1:9443109-9443128 | Msa1177120:intron | 25.0% |
! | TTATCCAAAAGAAGAAGATT+TGG | - | chr8_1:9443110-9443129 | Msa1177120:intron | 25.0% |
! | GTTATATTGTCAAAGATAAC+TGG | - | chr8_1:9441648-9441667 | Msa1177120:intron | 25.0% |
!! | TGAATTATTCATGGTGTTAA+GGG | - | chr8_1:9441827-9441846 | Msa1177120:intron | 25.0% |
!! | ATGAATTATTCATGGTGTTA+AGG | - | chr8_1:9441828-9441847 | Msa1177120:intron | 25.0% |
!!! | CTTTTTACCAGTTTAAGTTA+AGG | + | chr8_1:9442271-9442290 | Msa1177130:intron | 25.0% |
! | ATCTTTAAATTAAATGGCAG+CGG | + | chr8_1:9442506-9442525 | Msa1177130:intron | 25.0% |
! | TTTGTACTTATTCTTATAGC+AGG | - | chr8_1:9442697-9442716 | Msa1177120:intron | 25.0% |
! | GACTCAATAAAAATCTGTAT+TGG | - | chr8_1:9442809-9442828 | Msa1177120:intron | 25.0% |
!! | AAATTTGGAAGAGTTAGTTT+GGG | - | chr8_1:9443000-9443019 | Msa1177120:intron | 25.0% |
! | TGTGGAGTTTAATTAAGTAT+TGG | - | chr8_1:9443023-9443042 | Msa1177120:intron | 25.0% |
! | TATCCAAAAGAAGAAGATTT+GGG | - | chr8_1:9443109-9443128 | Msa1177120:intron | 25.0% |
! | TTATCCAAAAGAAGAAGATT+TGG | - | chr8_1:9443110-9443129 | Msa1177120:intron | 25.0% |
! | TTTTTCCTTTGATTCTTCAG+TGG | + | chr8_1:9441492-9441511 | Msa1177130:CDS | 30.0% |
GTTAAAGAAAGAAGAAAGCA+TGG | + | chr8_1:9441549-9441568 | Msa1177130:CDS | 30.0% | |
! | AATTACCATCACAAGTATTG+AGG | - | chr8_1:9441776-9441795 | Msa1177120:intron | 30.0% |
AAGGGATATACAAAACTCAT+TGG | - | chr8_1:9441809-9441828 | Msa1177120:intron | 30.0% | |
AACCACTGATGAATTATTCA+TGG | - | chr8_1:9441836-9441855 | Msa1177120:intron | 30.0% | |
ATATCAAGAAACGAGCTTAT+GGG | + | chr8_1:9442038-9442057 | Msa1177130:CDS | 30.0% | |
AATGACATGACATTAGATTG+TGG | - | chr8_1:9442193-9442212 | Msa1177120:intron | 30.0% | |
AATGAATGTATAGATAGTCC+AGG | + | chr8_1:9442319-9442338 | Msa1177130:intron | 30.0% | |
TAGTAACTATCTTCTTGGAA+GGG | - | chr8_1:9442450-9442469 | Msa1177120:intron | 30.0% | |
TTAGTAACTATCTTCTTGGA+AGG | - | chr8_1:9442451-9442470 | Msa1177120:intron | 30.0% | |
GAACTTAGTAACTATCTTCT+TGG | - | chr8_1:9442455-9442474 | Msa1177120:intron | 30.0% | |
AGAAGATAGTTACTAAGTTC+TGG | + | chr8_1:9442455-9442474 | Msa1177130:intron | 30.0% | |
TTTGATTACAAGTCATGGAT+TGG | + | chr8_1:9442531-9442550 | Msa1177130:CDS | 30.0% | |
TTGATTACAAGTCATGGATT+GGG | + | chr8_1:9442532-9442551 | Msa1177130:CDS | 30.0% | |
TTACTTCAGTAATTGAGTCA+GGG | - | chr8_1:9442663-9442682 | Msa1177120:intron | 30.0% | |
TTTACTTCAGTAATTGAGTC+AGG | - | chr8_1:9442664-9442683 | Msa1177120:intron | 30.0% | |
!!! | GATTTGTTTGTTTTGGTAAC+TGG | - | chr8_1:9442749-9442768 | Msa1177120:intron | 30.0% |
GAATCAATTGTTGTAGCATA+GGG | - | chr8_1:9442783-9442802 | Msa1177120:intron | 30.0% | |
TGAATCAATTGTTGTAGCAT+AGG | - | chr8_1:9442784-9442803 | Msa1177120:intron | 30.0% | |
AATGGTAAACAAATTGGATG+GGG | - | chr8_1:9442909-9442928 | Msa1177120:intron | 30.0% | |
GAATGGTAAACAAATTGGAT+GGG | - | chr8_1:9442910-9442929 | Msa1177120:intron | 30.0% | |
AGAATGGTAAACAAATTGGA+TGG | - | chr8_1:9442911-9442930 | Msa1177120:intron | 30.0% | |
!! | ATTCAGGTATTGGAATAGAA+GGG | - | chr8_1:9442964-9442983 | Msa1177120:intron | 30.0% |
!! | TATTCAGGTATTGGAATAGA+AGG | - | chr8_1:9442965-9442984 | Msa1177120:intron | 30.0% |
GAGAAATGTTATTCAGGTAT+TGG | - | chr8_1:9442974-9442993 | Msa1177120:intron | 30.0% | |
GAAATTTGGAAGAGTTAGTT+TGG | - | chr8_1:9443001-9443020 | Msa1177120:intron | 30.0% | |
! | TGAATTAGCTTGAATAGTTG+TGG | - | chr8_1:9443041-9443060 | Msa1177120:intron | 30.0% |
! | TTTTTCCTTTGATTCTTCAG+TGG | + | chr8_1:9441492-9441511 | Msa1177130:CDS | 30.0% |
GTTAAAGAAAGAAGAAAGCA+TGG | + | chr8_1:9441549-9441568 | Msa1177130:CDS | 30.0% | |
! | AATTACCATCACAAGTATTG+AGG | - | chr8_1:9441776-9441795 | Msa1177120:intron | 30.0% |
AAGGGATATACAAAACTCAT+TGG | - | chr8_1:9441809-9441828 | Msa1177120:intron | 30.0% | |
AACCACTGATGAATTATTCA+TGG | - | chr8_1:9441836-9441855 | Msa1177120:intron | 30.0% | |
ATATCAAGAAACGAGCTTAT+GGG | + | chr8_1:9442038-9442057 | Msa1177130:CDS | 30.0% | |
AATGACATGACATTAGATTG+TGG | - | chr8_1:9442193-9442212 | Msa1177120:intron | 30.0% | |
AATGAATGTATAGATAGTCC+AGG | + | chr8_1:9442319-9442338 | Msa1177130:intron | 30.0% | |
TAGTAACTATCTTCTTGGAA+GGG | - | chr8_1:9442450-9442469 | Msa1177120:intron | 30.0% | |
TTAGTAACTATCTTCTTGGA+AGG | - | chr8_1:9442451-9442470 | Msa1177120:intron | 30.0% | |
GAACTTAGTAACTATCTTCT+TGG | - | chr8_1:9442455-9442474 | Msa1177120:intron | 30.0% | |
AGAAGATAGTTACTAAGTTC+TGG | + | chr8_1:9442455-9442474 | Msa1177130:intron | 30.0% | |
TTTGATTACAAGTCATGGAT+TGG | + | chr8_1:9442531-9442550 | Msa1177130:CDS | 30.0% | |
TTGATTACAAGTCATGGATT+GGG | + | chr8_1:9442532-9442551 | Msa1177130:CDS | 30.0% | |
TTACTTCAGTAATTGAGTCA+GGG | - | chr8_1:9442663-9442682 | Msa1177120:intron | 30.0% | |
TTTACTTCAGTAATTGAGTC+AGG | - | chr8_1:9442664-9442683 | Msa1177120:intron | 30.0% | |
!!! | GATTTGTTTGTTTTGGTAAC+TGG | - | chr8_1:9442749-9442768 | Msa1177120:intron | 30.0% |
GAATCAATTGTTGTAGCATA+GGG | - | chr8_1:9442783-9442802 | Msa1177120:intron | 30.0% | |
TGAATCAATTGTTGTAGCAT+AGG | - | chr8_1:9442784-9442803 | Msa1177120:intron | 30.0% | |
AATGGTAAACAAATTGGATG+GGG | - | chr8_1:9442909-9442928 | Msa1177120:intron | 30.0% | |
GAATGGTAAACAAATTGGAT+GGG | - | chr8_1:9442910-9442929 | Msa1177120:intron | 30.0% | |
AGAATGGTAAACAAATTGGA+TGG | - | chr8_1:9442911-9442930 | Msa1177120:intron | 30.0% | |
!! | ATTCAGGTATTGGAATAGAA+GGG | - | chr8_1:9442964-9442983 | Msa1177120:intron | 30.0% |
!! | TATTCAGGTATTGGAATAGA+AGG | - | chr8_1:9442965-9442984 | Msa1177120:intron | 30.0% |
GAGAAATGTTATTCAGGTAT+TGG | - | chr8_1:9442974-9442993 | Msa1177120:intron | 30.0% | |
GAAATTTGGAAGAGTTAGTT+TGG | - | chr8_1:9443001-9443020 | Msa1177120:intron | 30.0% | |
! | TGAATTAGCTTGAATAGTTG+TGG | - | chr8_1:9443041-9443060 | Msa1177120:intron | 30.0% |
GAAACTATGTTGAAGACTCA+CGG | + | chr8_1:9441571-9441590 | Msa1177130:CDS | 35.0% | |
TTTCTGGACAACATTAAACC+TGG | + | chr8_1:9441601-9441620 | Msa1177130:CDS | 35.0% | |
ACAACATTAAACCTGGAATC+TGG | + | chr8_1:9441608-9441627 | Msa1177130:CDS | 35.0% | |
CACCATGAATAATTCATCAG+TGG | + | chr8_1:9441831-9441850 | Msa1177130:intron | 35.0% | |
! | GTTACTGTTTTGTACTGCAA+GGG | + | chr8_1:9441853-9441872 | Msa1177130:intron | 35.0% |
GGGTTTGCGTTAGAATAATA+TGG | + | chr8_1:9441873-9441892 | Msa1177130:intron | 35.0% | |
CATGTTTCTCCTGCTTATAT+AGG | + | chr8_1:9441920-9441939 | Msa1177130:intron | 35.0% | |
TGCATTGTTCCTATATAAGC+AGG | - | chr8_1:9441932-9441951 | Msa1177120:intron | 35.0% | |
TATAGGAACAATGCAGACAT+TGG | + | chr8_1:9441937-9441956 | Msa1177130:intron | 35.0% | |
TCTGTGAAGACTACGAAAAT+GGG | + | chr8_1:9441984-9442003 | Msa1177130:CDS | 35.0% | |
GATATCAAGAAACGAGCTTA+TGG | + | chr8_1:9442037-9442056 | Msa1177130:CDS | 35.0% | |
TATCAAGAAACGAGCTTATG+GGG | + | chr8_1:9442039-9442058 | Msa1177130:CDS | 35.0% | |
CAGGTGTTTCACATCAAAAA+TGG | - | chr8_1:9442074-9442093 | Msa1177120:intron | 35.0% | |
! | CATTTTTGATGTGAAACACC+TGG | + | chr8_1:9442072-9442091 | Msa1177130:CDS | 35.0% |
TGCGTAACCTTAACTTAAAC+TGG | - | chr8_1:9442281-9442300 | Msa1177120:intron | 35.0% | |
CGGTATTTGATTACAAGTCA+TGG | + | chr8_1:9442526-9442545 | Msa1177130:CDS | 35.0% | |
TGAAAAGCAATCATGGTCTT+GGG | - | chr8_1:9442576-9442595 | Msa1177120:intron | 35.0% | |
ATGAAAAGCAATCATGGTCT+TGG | - | chr8_1:9442577-9442596 | Msa1177120:intron | 35.0% | |
AGTTCCTTCATCTGTTATTG+CGG | + | chr8_1:9442864-9442883 | Msa1177130:intron | 35.0% | |
TTGAGGTTGGACAAATAGAA+TGG | - | chr8_1:9442927-9442946 | Msa1177120:intron | 35.0% | |
TATTGGAATAGAAGGGAAGT+TGG | - | chr8_1:9442957-9442976 | Msa1177120:intron | 35.0% | |
GGGAAAGAGAAATGTTATTC+AGG | - | chr8_1:9442980-9442999 | Msa1177120:intron | 35.0% | |
TACATGCTTATCTCAGTTGA+TGG | - | chr8_1:9443064-9443083 | Msa1177120:intron | 35.0% | |
! | AGTCCCAAATCTTCTTCTTT+TGG | + | chr8_1:9443103-9443122 | Msa1177130:intron | 35.0% |
GAAACTATGTTGAAGACTCA+CGG | + | chr8_1:9441571-9441590 | Msa1177130:CDS | 35.0% | |
TTTCTGGACAACATTAAACC+TGG | + | chr8_1:9441601-9441620 | Msa1177130:CDS | 35.0% | |
ACAACATTAAACCTGGAATC+TGG | + | chr8_1:9441608-9441627 | Msa1177130:CDS | 35.0% | |
CACCATGAATAATTCATCAG+TGG | + | chr8_1:9441831-9441850 | Msa1177130:intron | 35.0% | |
! | GTTACTGTTTTGTACTGCAA+GGG | + | chr8_1:9441853-9441872 | Msa1177130:intron | 35.0% |
GGGTTTGCGTTAGAATAATA+TGG | + | chr8_1:9441873-9441892 | Msa1177130:intron | 35.0% | |
CATGTTTCTCCTGCTTATAT+AGG | + | chr8_1:9441920-9441939 | Msa1177130:intron | 35.0% | |
TGCATTGTTCCTATATAAGC+AGG | - | chr8_1:9441932-9441951 | Msa1177120:intron | 35.0% | |
TATAGGAACAATGCAGACAT+TGG | + | chr8_1:9441937-9441956 | Msa1177130:intron | 35.0% | |
TCTGTGAAGACTACGAAAAT+GGG | + | chr8_1:9441984-9442003 | Msa1177130:CDS | 35.0% | |
GATATCAAGAAACGAGCTTA+TGG | + | chr8_1:9442037-9442056 | Msa1177130:CDS | 35.0% | |
TATCAAGAAACGAGCTTATG+GGG | + | chr8_1:9442039-9442058 | Msa1177130:CDS | 35.0% | |
CAGGTGTTTCACATCAAAAA+TGG | - | chr8_1:9442074-9442093 | Msa1177120:intron | 35.0% | |
! | CATTTTTGATGTGAAACACC+TGG | + | chr8_1:9442072-9442091 | Msa1177130:CDS | 35.0% |
TGCGTAACCTTAACTTAAAC+TGG | - | chr8_1:9442281-9442300 | Msa1177120:intron | 35.0% | |
CGGTATTTGATTACAAGTCA+TGG | + | chr8_1:9442526-9442545 | Msa1177130:CDS | 35.0% | |
TGAAAAGCAATCATGGTCTT+GGG | - | chr8_1:9442576-9442595 | Msa1177120:intron | 35.0% | |
ATGAAAAGCAATCATGGTCT+TGG | - | chr8_1:9442577-9442596 | Msa1177120:intron | 35.0% | |
AGTTCCTTCATCTGTTATTG+CGG | + | chr8_1:9442864-9442883 | Msa1177130:intron | 35.0% | |
TTGAGGTTGGACAAATAGAA+TGG | - | chr8_1:9442927-9442946 | Msa1177120:intron | 35.0% | |
TATTGGAATAGAAGGGAAGT+TGG | - | chr8_1:9442957-9442976 | Msa1177120:intron | 35.0% | |
GGGAAAGAGAAATGTTATTC+AGG | - | chr8_1:9442980-9442999 | Msa1177120:intron | 35.0% | |
TACATGCTTATCTCAGTTGA+TGG | - | chr8_1:9443064-9443083 | Msa1177120:intron | 35.0% | |
! | AGTCCCAAATCTTCTTCTTT+TGG | + | chr8_1:9443103-9443122 | Msa1177130:intron | 35.0% |
ATTCAGTCTCTCTGTCAAGA+GGG | - | chr8_1:9441518-9441537 | Msa1177120:intron | 40.0% | |
AATTCAGTCTCTCTGTCAAG+AGG | - | chr8_1:9441519-9441538 | Msa1177120:intron | 40.0% | |
! | GACAGAGAGACTGAATTTTC+CGG | + | chr8_1:9441522-9441541 | Msa1177130:CDS | 40.0% |
! | ACAGAGAGACTGAATTTTCC+GGG | + | chr8_1:9441523-9441542 | Msa1177130:CDS | 40.0% |
TCTTCTTTCTTTAACTCCCC+CGG | - | chr8_1:9441544-9441563 | Msa1177120:intron | 40.0% | |
!! | AAGTATTGAGGTCACAAACC+GGG | - | chr8_1:9441764-9441783 | Msa1177120:intron | 40.0% |
!! | CAAGTATTGAGGTCACAAAC+CGG | - | chr8_1:9441765-9441784 | Msa1177120:intron | 40.0% |
TGTGACCTCAATACTTGTGA+TGG | + | chr8_1:9441768-9441787 | Msa1177130:CDS | 40.0% | |
! | GGTTACTGTTTTGTACTGCA+AGG | + | chr8_1:9441852-9441871 | Msa1177130:intron | 40.0% |
! | CATTTTCGTAGTCTTCACAG+AGG | - | chr8_1:9441985-9442004 | Msa1177120:intron | 40.0% |
CTCTGTGAAGACTACGAAAA+TGG | + | chr8_1:9441983-9442002 | Msa1177130:CDS | 40.0% | |
AAGACTACGAAAATGGGAAC+TGG | + | chr8_1:9441990-9442009 | Msa1177130:CDS | 40.0% | |
AGACTACGAAAATGGGAACT+GGG | + | chr8_1:9441991-9442010 | Msa1177130:CDS | 40.0% | |
CTCCGAATGATTCTTGGTTT+GGG | + | chr8_1:9442372-9442391 | Msa1177130:intron | 40.0% | |
! | TCCGAATGATTCTTGGTTTG+GGG | + | chr8_1:9442373-9442392 | Msa1177130:intron | 40.0% |
TCCCCAAACCAAGAATCATT+CGG | - | chr8_1:9442377-9442396 | Msa1177120:intron | 40.0% | |
!! | TTACAAGTCATGGATTGGGA+AGG | + | chr8_1:9442536-9442555 | Msa1177130:CDS | 40.0% |
GGATTGGGAAGGATAATTAC+TGG | + | chr8_1:9442547-9442566 | Msa1177130:CDS | 40.0% | |
TGCTGCATGAAAAGCAATCA+TGG | - | chr8_1:9442583-9442602 | Msa1177120:intron | 40.0% | |
GTAACTGGTTAATATGCAGC+GGG | - | chr8_1:9442734-9442753 | Msa1177120:intron | 40.0% | |
GGTAACTGGTTAATATGCAG+CGG | - | chr8_1:9442735-9442754 | Msa1177120:intron | 40.0% | |
ATGAAGGAACTTGTCCTTCT+TGG | - | chr8_1:9442855-9442874 | Msa1177120:intron | 40.0% | |
AGAACCGCAATAACAGATGA+AGG | - | chr8_1:9442871-9442890 | Msa1177120:intron | 40.0% | |
TTATTGCGGTTCTGCAAAGT+CGG | + | chr8_1:9442878-9442897 | Msa1177130:intron | 40.0% | |
AGTTGGACATCAATTGAGGT+TGG | - | chr8_1:9442940-9442959 | Msa1177120:intron | 40.0% | |
! | GATTTGGGACTGTAGTAGAT+TGG | - | chr8_1:9443094-9443113 | Msa1177120:intron | 40.0% |
! | ATGTGAAGTACCAAGCTATG+AGG | + | chr8_1:9443285-9443304 | Msa1177130:CDS | 40.0% |
! | TGTGAAGTACCAAGCTATGA+GGG | + | chr8_1:9443286-9443305 | Msa1177130:CDS | 40.0% |
ATTCAGTCTCTCTGTCAAGA+GGG | - | chr8_1:9441518-9441537 | Msa1177120:intron | 40.0% | |
AATTCAGTCTCTCTGTCAAG+AGG | - | chr8_1:9441519-9441538 | Msa1177120:intron | 40.0% | |
! | GACAGAGAGACTGAATTTTC+CGG | + | chr8_1:9441522-9441541 | Msa1177130:CDS | 40.0% |
! | ACAGAGAGACTGAATTTTCC+GGG | + | chr8_1:9441523-9441542 | Msa1177130:CDS | 40.0% |
TCTTCTTTCTTTAACTCCCC+CGG | - | chr8_1:9441544-9441563 | Msa1177120:intron | 40.0% | |
!! | AAGTATTGAGGTCACAAACC+GGG | - | chr8_1:9441764-9441783 | Msa1177120:intron | 40.0% |
!! | CAAGTATTGAGGTCACAAAC+CGG | - | chr8_1:9441765-9441784 | Msa1177120:intron | 40.0% |
TGTGACCTCAATACTTGTGA+TGG | + | chr8_1:9441768-9441787 | Msa1177130:CDS | 40.0% | |
! | GGTTACTGTTTTGTACTGCA+AGG | + | chr8_1:9441852-9441871 | Msa1177130:intron | 40.0% |
! | CATTTTCGTAGTCTTCACAG+AGG | - | chr8_1:9441985-9442004 | Msa1177120:intron | 40.0% |
CTCTGTGAAGACTACGAAAA+TGG | + | chr8_1:9441983-9442002 | Msa1177130:CDS | 40.0% | |
AAGACTACGAAAATGGGAAC+TGG | + | chr8_1:9441990-9442009 | Msa1177130:CDS | 40.0% | |
AGACTACGAAAATGGGAACT+GGG | + | chr8_1:9441991-9442010 | Msa1177130:CDS | 40.0% | |
CTCCGAATGATTCTTGGTTT+GGG | + | chr8_1:9442372-9442391 | Msa1177130:intron | 40.0% | |
! | TCCGAATGATTCTTGGTTTG+GGG | + | chr8_1:9442373-9442392 | Msa1177130:intron | 40.0% |
TCCCCAAACCAAGAATCATT+CGG | - | chr8_1:9442377-9442396 | Msa1177120:intron | 40.0% | |
!! | TTACAAGTCATGGATTGGGA+AGG | + | chr8_1:9442536-9442555 | Msa1177130:CDS | 40.0% |
GGATTGGGAAGGATAATTAC+TGG | + | chr8_1:9442547-9442566 | Msa1177130:CDS | 40.0% | |
TGCTGCATGAAAAGCAATCA+TGG | - | chr8_1:9442583-9442602 | Msa1177120:intron | 40.0% | |
GTAACTGGTTAATATGCAGC+GGG | - | chr8_1:9442734-9442753 | Msa1177120:intron | 40.0% | |
GGTAACTGGTTAATATGCAG+CGG | - | chr8_1:9442735-9442754 | Msa1177120:intron | 40.0% | |
ATGAAGGAACTTGTCCTTCT+TGG | - | chr8_1:9442855-9442874 | Msa1177120:intron | 40.0% | |
AGAACCGCAATAACAGATGA+AGG | - | chr8_1:9442871-9442890 | Msa1177120:intron | 40.0% | |
TTATTGCGGTTCTGCAAAGT+CGG | + | chr8_1:9442878-9442897 | Msa1177130:intron | 40.0% | |
AGTTGGACATCAATTGAGGT+TGG | - | chr8_1:9442940-9442959 | Msa1177120:intron | 40.0% | |
! | GATTTGGGACTGTAGTAGAT+TGG | - | chr8_1:9443094-9443113 | Msa1177120:intron | 40.0% |
! | ATGTGAAGTACCAAGCTATG+AGG | + | chr8_1:9443285-9443304 | Msa1177130:CDS | 40.0% |
! | TGTGAAGTACCAAGCTATGA+GGG | + | chr8_1:9443286-9443305 | Msa1177130:CDS | 40.0% |
! | CAGAGAGACTGAATTTTCCG+GGG | + | chr8_1:9441524-9441543 | Msa1177130:CDS | 45.0% |
! | AGAGAGACTGAATTTTCCGG+GGG | + | chr8_1:9441525-9441544 | Msa1177130:CDS | 45.0% |
AAACCTGGAATCTGGATTGC+TGG | + | chr8_1:9441616-9441635 | Msa1177130:CDS | 45.0% | |
CAATGCAGACATTGGATGCA+AGG | + | chr8_1:9441945-9441964 | Msa1177130:CDS | 45.0% | |
AAATGGGAACTGGGATTACG+AGG | + | chr8_1:9442000-9442019 | Msa1177130:CDS | 45.0% | |
AACTGGGATTACGAGGTTGT+AGG | + | chr8_1:9442007-9442026 | Msa1177130:CDS | 45.0% | |
GTCAACTTACCAACAGTCAG+TGG | + | chr8_1:9442132-9442151 | Msa1177130:intron | 45.0% | |
! | TTAACAAGGCCACTGACTGT+TGG | - | chr8_1:9442144-9442163 | Msa1177120:intron | 45.0% |
TGAAGCCTCCGAATGATTCT+TGG | + | chr8_1:9442366-9442385 | Msa1177130:intron | 45.0% | |
CCAAACCAAGAATCATTCGG+AGG | - | chr8_1:9442374-9442393 | Msa1177120:intron | 45.0% | |
CCTCCGAATGATTCTTGGTT+TGG | + | chr8_1:9442371-9442390 | Msa1177130:intron | 45.0% | |
GGGAAGTTGGACATCAATTG+AGG | - | chr8_1:9442944-9442963 | Msa1177120:intron | 45.0% | |
TTGGGACTGTAGTAGATTGG+TGG | - | chr8_1:9443091-9443110 | Msa1177120:intron | 45.0% | |
ATGGAAACAACTTCTCCACC+CGG | - | chr8_1:9443317-9443336 | Msa1177120:intron | 45.0% | |
! | CAGAGAGACTGAATTTTCCG+GGG | + | chr8_1:9441524-9441543 | Msa1177130:CDS | 45.0% |
! | AGAGAGACTGAATTTTCCGG+GGG | + | chr8_1:9441525-9441544 | Msa1177130:CDS | 45.0% |
AAACCTGGAATCTGGATTGC+TGG | + | chr8_1:9441616-9441635 | Msa1177130:CDS | 45.0% | |
CAATGCAGACATTGGATGCA+AGG | + | chr8_1:9441945-9441964 | Msa1177130:CDS | 45.0% | |
AAATGGGAACTGGGATTACG+AGG | + | chr8_1:9442000-9442019 | Msa1177130:CDS | 45.0% | |
AACTGGGATTACGAGGTTGT+AGG | + | chr8_1:9442007-9442026 | Msa1177130:CDS | 45.0% | |
GTCAACTTACCAACAGTCAG+TGG | + | chr8_1:9442132-9442151 | Msa1177130:intron | 45.0% | |
! | TTAACAAGGCCACTGACTGT+TGG | - | chr8_1:9442144-9442163 | Msa1177120:intron | 45.0% |
TGAAGCCTCCGAATGATTCT+TGG | + | chr8_1:9442366-9442385 | Msa1177130:intron | 45.0% | |
CCAAACCAAGAATCATTCGG+AGG | - | chr8_1:9442374-9442393 | Msa1177120:intron | 45.0% | |
CCTCCGAATGATTCTTGGTT+TGG | + | chr8_1:9442371-9442390 | Msa1177130:intron | 45.0% | |
GGGAAGTTGGACATCAATTG+AGG | - | chr8_1:9442944-9442963 | Msa1177120:intron | 45.0% | |
TTGGGACTGTAGTAGATTGG+TGG | - | chr8_1:9443091-9443110 | Msa1177120:intron | 45.0% | |
ATGGAAACAACTTCTCCACC+CGG | - | chr8_1:9443317-9443336 | Msa1177120:intron | 45.0% | |
GAGGGCCACTGAAGAATCAA+AGG | - | chr8_1:9441500-9441519 | Msa1177120:intron | 50.0% | |
!! | GACTCACGGTTGTTGCTTTC+TGG | + | chr8_1:9441585-9441604 | Msa1177130:CDS | 50.0% |
GTACCAGCAATCCAGATTCC+AGG | - | chr8_1:9441622-9441641 | Msa1177120:intron | 50.0% | |
GTACACACACTGGAGGCAAA+GGG | - | chr8_1:9442833-9442852 | Msa1177120:intron | 50.0% | |
CTTCTTGGTACACACACTGG+AGG | - | chr8_1:9442840-9442859 | Msa1177120:intron | 50.0% | |
CTCCAGTGTGTGTACCAAGA+AGG | + | chr8_1:9442838-9442857 | Msa1177130:intron | 50.0% | |
GTCCTTCTTGGTACACACAC+TGG | - | chr8_1:9442843-9442862 | Msa1177120:intron | 50.0% | |
AAGTACCAAGCTATGAGGGC+AGG | + | chr8_1:9443290-9443309 | Msa1177130:CDS | 50.0% | |
CAGCTGCTGAGAGATTCTGA+TGG | - | chr8_1:9443336-9443355 | Msa1177120:intron | 50.0% | |
GAGGGCCACTGAAGAATCAA+AGG | - | chr8_1:9441500-9441519 | Msa1177120:intron | 50.0% | |
!! | GACTCACGGTTGTTGCTTTC+TGG | + | chr8_1:9441585-9441604 | Msa1177130:CDS | 50.0% |
GTACCAGCAATCCAGATTCC+AGG | - | chr8_1:9441622-9441641 | Msa1177120:intron | 50.0% | |
GTACACACACTGGAGGCAAA+GGG | - | chr8_1:9442833-9442852 | Msa1177120:intron | 50.0% | |
CTTCTTGGTACACACACTGG+AGG | - | chr8_1:9442840-9442859 | Msa1177120:intron | 50.0% | |
CTCCAGTGTGTGTACCAAGA+AGG | + | chr8_1:9442838-9442857 | Msa1177130:intron | 50.0% | |
GTCCTTCTTGGTACACACAC+TGG | - | chr8_1:9442843-9442862 | Msa1177120:intron | 50.0% | |
AAGTACCAAGCTATGAGGGC+AGG | + | chr8_1:9443290-9443309 | Msa1177130:CDS | 50.0% | |
CAGCTGCTGAGAGATTCTGA+TGG | - | chr8_1:9443336-9443355 | Msa1177120:intron | 50.0% | |
AAACGAGCTTATGGGGCTGC+TGG | + | chr8_1:9442046-9442065 | Msa1177130:CDS | 55.0% | |
CAGACGTAGAAGAACTCGCC+AGG | - | chr8_1:9442093-9442112 | Msa1177120:intron | 55.0% | |
CTGGCGAGTTCTTCTACGTC+TGG | + | chr8_1:9442091-9442110 | Msa1177130:CDS | 55.0% | |
GGTACACACACTGGAGGCAA+AGG | - | chr8_1:9442834-9442853 | Msa1177120:intron | 55.0% | |
AAACGAGCTTATGGGGCTGC+TGG | + | chr8_1:9442046-9442065 | Msa1177130:CDS | 55.0% | |
CAGACGTAGAAGAACTCGCC+AGG | - | chr8_1:9442093-9442112 | Msa1177120:intron | 55.0% | |
CTGGCGAGTTCTTCTACGTC+TGG | + | chr8_1:9442091-9442110 | Msa1177130:CDS | 55.0% | |
GGTACACACACTGGAGGCAA+AGG | - | chr8_1:9442834-9442853 | Msa1177120:intron | 55.0% | |
TCTGCAGCTTGTGCGATGCC+CGG | + | chr8_1:9441743-9441762 | Msa1177130:CDS | 60.0% | |
CCAAGCTATGAGGGCAGGAC+CGG | + | chr8_1:9443295-9443314 | Msa1177130:CDS | 60.0% | |
CAAGCTATGAGGGCAGGACC+GGG | + | chr8_1:9443296-9443315 | Msa1177130:CDS | 60.0% | |
TCTGCAGCTTGTGCGATGCC+CGG | + | chr8_1:9441743-9441762 | Msa1177130:CDS | 60.0% | |
CCAAGCTATGAGGGCAGGAC+CGG | + | chr8_1:9443295-9443314 | Msa1177130:CDS | 60.0% | |
CAAGCTATGAGGGCAGGACC+GGG | + | chr8_1:9443296-9443315 | Msa1177130:CDS | 60.0% | |
CCGGTCCTGCCCTCATAGCT+TGG | - | chr8_1:9443298-9443317 | Msa1177120:intron | 65.0% | |
CCGGTCCTGCCCTCATAGCT+TGG | - | chr8_1:9443298-9443317 | Msa1177120:intron | 65.0% | |
GCTATGAGGGCAGGACCGGG+TGG | + | chr8_1:9443299-9443318 | Msa1177130:CDS | 70.0% | |
GCTATGAGGGCAGGACCGGG+TGG | + | chr8_1:9443299-9443318 | Msa1177130:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 9441478 | 9443361 | 9441478 | ID=Msa1177130;Name=Msa1177130 |
chr8_1 | mRNA | 9441478 | 9443361 | 9441478 | ID=Msa1177130-mRNA-1;Parent=Msa1177130;Name=Msa1177130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.8|1|1|5|0|189 |
chr8_1 | exon | 9441478 | 9441637 | 9441478 | ID=Msa1177130-mRNA-1:exon:3176;Parent=Msa1177130-mRNA-1 |
chr8_1 | exon | 9441742 | 9441789 | 9441742 | ID=Msa1177130-mRNA-1:exon:3177;Parent=Msa1177130-mRNA-1 |
chr8_1 | exon | 9441942 | 9442112 | 9441942 | ID=Msa1177130-mRNA-1:exon:3178;Parent=Msa1177130-mRNA-1 |
chr8_1 | exon | 9442526 | 9442633 | 9442526 | ID=Msa1177130-mRNA-1:exon:3179;Parent=Msa1177130-mRNA-1 |
chr8_1 | exon | 9443279 | 9443361 | 9443279 | ID=Msa1177130-mRNA-1:exon:3180;Parent=Msa1177130-mRNA-1 |
chr8_1 | CDS | 9441478 | 9441637 | 9441478 | ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1 |
chr8_1 | CDS | 9441742 | 9441789 | 9441742 | ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1 |
chr8_1 | CDS | 9441942 | 9442112 | 9441942 | ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1 |
chr8_1 | CDS | 9442526 | 9442633 | 9442526 | ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1 |
chr8_1 | CDS | 9443279 | 9443361 | 9443279 | ID=Msa1177130-mRNA-1:cds;Parent=Msa1177130-mRNA-1 |
Gene Sequence |
Protein sequence |