Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316950 | XP_013444640.2 | 95.222 | 293 | 14 | 0 | 1 | 293 | 1 | 293 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316950 | sp|Q9M365|FB331_ARATH | 60.821 | 268 | 105 | 0 | 26 | 293 | 66 | 333 | 6.72e-123 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316950 | G8A2W2 | 95.222 | 293 | 14 | 0 | 1 | 293 | 1 | 293 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0792290 | Msa1316950 | 0.842433 | 2.594380e-58 | -8.615850e-47 |
| Msa1245820 | Msa1316950 | 0.827748 | 1.318315e-54 | -8.615850e-47 |
| Msa1316930 | Msa1316950 | 0.872644 | 2.714011e-67 | -8.615850e-47 |
| Msa1077460 | Msa1316950 | 0.803567 | 3.277478e-49 | -8.615850e-47 |
| Msa1164120 | Msa1316950 | 0.802911 | 4.482033e-49 | -8.615850e-47 |
| Msa1177100 | Msa1316950 | 0.930655 | 1.193915e-93 | -8.615850e-47 |
| Msa1177130 | Msa1316950 | 0.861485 | 9.928953e-64 | -8.615850e-47 |
| Msa1177160 | Msa1316950 | 0.852325 | 4.970697e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316950 | MtrunA17_Chr8g0347091 | 95.222 | 293 | 14 | 0 | 1 | 293 | 1 | 293 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316950 | AT3G61730.1 | 60.821 | 268 | 105 | 0 | 26 | 293 | 66 | 333 | 6.83e-124 | 358 |
| Msa1316950 | AT5G36000.1 | 57.463 | 268 | 114 | 0 | 26 | 293 | 62 | 329 | 4.65e-117 | 341 |
| Msa1316950 | AT3G62500.1 | 50.610 | 164 | 60 | 3 | 129 | 292 | 178 | 320 | 5.88e-44 | 154 |
| Msa1316950 | AT3G62500.2 | 50.610 | 164 | 60 | 3 | 129 | 292 | 178 | 320 | 7.60e-44 | 154 |
Find 82 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 8_4:+17922264 | Msa1316950:CDS |
| GACTGAGATAGCGAAGTTTC+TGG | 0.200830 | 8_4:+17921345 | Msa1316950:CDS |
| CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 8_4:+17922660 | Msa1316950:CDS |
| CTATCATGGATGATGCTATT+TGG | 0.269492 | 8_4:+17921419 | Msa1316950:CDS |
| AAGCTCTACACTTCAGCTTT+TGG | 0.288606 | 8_4:+17921505 | Msa1316950:CDS |
| AGTACCAGCAATCCAGATTC+CGG | 0.359409 | 8_4:-17922299 | None:intergenic |
| AAAGGTTCGATGACGACATT+TGG | 0.372412 | 8_4:+17921323 | Msa1316950:intron |
| ACAACATTAAACCCGGAATC+TGG | 0.391705 | 8_4:+17922287 | Msa1316950:CDS |
| ATGAAAAGCAATCATGGCCT+TGG | 0.410729 | 8_4:-17923321 | None:intergenic |
| TTTGATTACAAGTCTTGGAT+TGG | 0.411304 | 8_4:+17923278 | Msa1316950:CDS |
| GTACCAGCAATCCAGATTCC+GGG | 0.416662 | 8_4:-17922298 | None:intergenic |
| CCGATCATTCCACTTTCTCA+TGG | 0.422415 | 8_4:+17920417 | Msa1316950:CDS |
| AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 8_4:+17922667 | Msa1316950:CDS |
| GACAGAGAGACTGAATTTCC+CGG | 0.433664 | 8_4:+17922201 | Msa1316950:CDS |
| AAACGAGCTGATGGGGCTGC+TGG | 0.436386 | 8_4:+17922723 | Msa1316950:CDS |
| TCTTCTTTCTTTAACTCCCC+CGG | 0.450373 | 8_4:-17922220 | None:intergenic |
| ATGGTTCCGCCGTGCTATCA+TGG | 0.453543 | 8_4:+17921405 | Msa1316950:CDS |
| CGGTATTTGATTACAAGTCT+TGG | 0.460729 | 8_4:+17923273 | Msa1316950:CDS |
| CACTTGAATGCCACAGGTGG+AGG | 0.462347 | 8_4:-17921478 | None:intergenic |
| AAACCCGGAATCTGGATTGC+TGG | 0.464365 | 8_4:+17922295 | Msa1316950:CDS |
| TTGATTACAAGTCTTGGATT+GGG | 0.468371 | 8_4:+17923279 | Msa1316950:CDS |
| TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 8_4:+17922661 | Msa1316950:CDS |
| CTGGCGAGTTCTTCTACATC+TGG | 0.472677 | 8_4:+17922768 | Msa1316950:CDS |
| GAGAGAGAACCATGAGAAAG+TGG | 0.481943 | 8_4:-17920426 | None:intergenic |
| GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 8_4:+17922228 | Msa1316950:CDS |
| CAAGTATTGAGGTCACAAAC+CGG | 0.486887 | 8_4:-17922442 | None:intergenic |
| CTCCTACAAGTTCCGTCAGC+AGG | 0.492280 | 8_4:+17921625 | Msa1316950:CDS |
| TCGGAGAGAAAGCGAGGACG+AGG | 0.497635 | 8_4:-17920398 | None:intergenic |
| TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 8_4:+17922423 | Msa1316950:CDS |
| CGGAGGCAGTTCTCCGGCGT+CGG | 0.502337 | 8_4:-17920330 | None:intergenic |
| AGGAGAGTTGCAAGAGCAGA+TGG | 0.504948 | 8_4:-17920378 | None:intergenic |
| GGAAATTCAGTCTCTCTGTC+AGG | 0.506216 | 8_4:-17922198 | None:intergenic |
| TACTGCATGAAAAGCAATCA+TGG | 0.506734 | 8_4:-17923327 | None:intergenic |
| AATGCCACAGGTGGAGGAGA+TGG | 0.508135 | 8_4:-17921472 | None:intergenic |
| CCATGAGAAAGTGGAATGAT+CGG | 0.511183 | 8_4:-17920417 | None:intergenic |
| CTTCGCCGGAGGCAGTTCTC+CGG | 0.515973 | 8_4:-17920336 | None:intergenic |
| TGGAAAATCTCTGATAATGC+TGG | 0.516586 | 8_4:+17921369 | Msa1316950:CDS |
| AGGCAGTTCTCCGGCGTCGG+AGG | 0.518218 | 8_4:-17920327 | None:intergenic |
| GATATCAAGAAACGAGCTGA+TGG | 0.519250 | 8_4:+17922714 | Msa1316950:CDS |
| CTCCACCTGTGGCATTCAAG+TGG | 0.519260 | 8_4:+17921479 | Msa1316950:CDS |
| CTCCTGCTGACGGAACTTGT+AGG | 0.523611 | 8_4:-17921627 | None:intergenic |
| ACAGAGAGACTGAATTTCCC+GGG | 0.528448 | 8_4:+17922202 | Msa1316950:CDS |
| TTGCTCCACTTGAATGCCAC+AGG | 0.532015 | 8_4:-17921484 | None:intergenic |
| GTGGAGGAGATGGAACTTGA+AGG | 0.535718 | 8_4:-17921462 | None:intergenic |
| ACTAATTTACAAGAAAATGA+AGG | 0.538039 | 8_4:+17923359 | Msa1316950:CDS |
| AATTACCATCACAAGTATTG+AGG | 0.538205 | 8_4:-17922453 | None:intergenic |
| TATAGGAACAATGCAGACAT+TGG | 0.539902 | 8_4:+17922614 | Msa1316950:intron |
| AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 8_4:+17922684 | Msa1316950:CDS |
| AACGCTACTTCCTCCGACGC+CGG | 0.546509 | 8_4:+17920317 | Msa1316950:CDS |
| TGAAAAGCAATCATGGCCTT+GGG | 0.548558 | 8_4:-17923320 | None:intergenic |
| ATATCAAGAAACGAGCTGAT+GGG | 0.548821 | 8_4:+17922715 | Msa1316950:CDS |
| TTATGTCGGATTCGCTTCGC+CGG | 0.549153 | 8_4:-17920350 | None:intergenic |
| TGATAGCACGGCGGAACCAT+CGG | 0.557930 | 8_4:-17921402 | None:intergenic |
| CAATGCAGACATTGGATGCA+AGG | 0.559581 | 8_4:+17922622 | Msa1316950:CDS |
| GAGGGCTACTGAAGATTCAA+AGG | 0.565838 | 8_4:-17922176 | None:intergenic |
| CTATCAGATTGGATGCGCAT+TGG | 0.571767 | 8_4:+17922145 | Msa1316950:intron |
| CTCCACTTGAATGCCACAGG+TGG | 0.571927 | 8_4:-17921481 | None:intergenic |
| TTACAAGTCTTGGATTGGGA+AGG | 0.572360 | 8_4:+17923283 | Msa1316950:CDS |
| AGTTCCATCTCCTCCACCTG+TGG | 0.576848 | 8_4:+17921468 | Msa1316950:CDS |
| CAGATGTAGAAGAACTCGCC+AGG | 0.584311 | 8_4:-17922767 | None:intergenic |
| GGATTGGGAAGGATAATGAA+TGG | 0.588740 | 8_4:+17923294 | Msa1316950:CDS |
| TGTCGGATTCGCTTCGCCGG+AGG | 0.592455 | 8_4:-17920347 | None:intergenic |
| CGACGCCGGAGAACTGCCTC+CGG | 0.595956 | 8_4:+17920331 | Msa1316950:CDS |
| AAGTATTGAGGTCACAAACC+GGG | 0.600506 | 8_4:-17922441 | None:intergenic |
| TGTGACCTCAATACTTGTGA+TGG | 0.607442 | 8_4:+17922448 | Msa1316950:CDS |
| AATTCAGTCTCTCTGTCAGG+AGG | 0.611158 | 8_4:-17922195 | None:intergenic |
| GAGATAGCGAAGTTTCTGGA+TGG | 0.611982 | 8_4:+17921349 | Msa1316950:CDS |
| TTTCTGGACAACATTAAACC+CGG | 0.617091 | 8_4:+17922280 | Msa1316950:CDS |
| CAATGTGCTTCTCCTGCTGA+CGG | 0.619980 | 8_4:-17921637 | None:intergenic |
| GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 8_4:+17922250 | Msa1316950:CDS |
| TGCTGGCAGCGACAAACCGA+TGG | 0.623760 | 8_4:+17921386 | Msa1316950:CDS |
| TAGCATCATCCATGATAGCA+CGG | 0.625465 | 8_4:-17921414 | None:intergenic |
| CGTCAGCAGGAGAAGCACAT+TGG | 0.627665 | 8_4:+17921638 | Msa1316950:CDS |
| TATCAAGAAACGAGCTGATG+GGG | 0.628405 | 8_4:+17922716 | Msa1316950:CDS |
| GGATAATGAATGGCAACCCA+AGG | 0.631695 | 8_4:+17923304 | Msa1316950:CDS |
| AGACTACGAAAATGGGAACT+GGG | 0.645326 | 8_4:+17922668 | Msa1316950:CDS |
| ATTCAGTCTCTCTGTCAGGA+GGG | 0.655055 | 8_4:-17922194 | None:intergenic |
| GAATGATCGGAGAGAAAGCG+AGG | 0.656826 | 8_4:-17920404 | None:intergenic |
| CAGAGAGACTGAATTTCCCG+GGG | 0.659837 | 8_4:+17922203 | Msa1316950:CDS |
| AAATGGGAACTGGGATTACG+AGG | 0.675337 | 8_4:+17922677 | Msa1316950:CDS |
| AGAGAGACTGAATTTCCCGG+GGG | 0.787503 | 8_4:+17922204 | Msa1316950:CDS |
| CATCATCCATGATAGCACGG+CGG | 0.806408 | 8_4:-17921411 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTATAATTTTTATATG+TGG | + | chr8_4:17921099-17921118 | Msa1316950:intron | 10.0% |
| !!! | ATTAACATTGATTTTGAAAT+TGG | + | chr8_4:17921584-17921603 | Msa1316950:intron | 15.0% |
| !!! | TCTAAATTAATGCTTTTTAT+TGG | + | chr8_4:17923168-17923187 | Msa1316950:intron | 15.0% |
| !! | TATGTGGAAATGATTAATTA+AGG | + | chr8_4:17921115-17921134 | Msa1316950:intron | 20.0% |
| !! | TTAATCTGAATGCTTAATAA+AGG | + | chr8_4:17921305-17921324 | Msa1316950:intron | 20.0% |
| !! | ATCTATATCCTAATATATTG+TGG | + | chr8_4:17921679-17921698 | Msa1316950:intron | 20.0% |
| !!! | ACAACAAATTTTAACAGTTA+TGG | + | chr8_4:17921707-17921726 | Msa1316950:intron | 20.0% |
| !!! | TTAATGCTTTTTTATCATTG+AGG | + | chr8_4:17921762-17921781 | Msa1316950:intron | 20.0% |
| !! | TATAATATGTTCTATCAGAT+TGG | + | chr8_4:17922134-17922153 | Msa1316950:intron | 20.0% |
| !! | CTTAAAGAAATACATTAACA+AGG | - | chr8_4:17922835-17922854 | None:intergenic | 20.0% |
| !!! | TTTTGAAATTAATTTGTTCC+TGG | - | chr8_4:17923087-17923106 | None:intergenic | 20.0% |
| !!! | ATTTTTAAATTAAATGGCAG+CGG | + | chr8_4:17923253-17923272 | Msa1316950:intron | 20.0% |
| !! | ACTAATTTACAAGAAAATGA+AGG | + | chr8_4:17923359-17923378 | Msa1316950:CDS | 20.0% |
| !! | GGAAATTCAGTTTGAATTTT+CGG | + | chr8_4:17920577-17920596 | Msa1316950:intron | 25.0% |
| !!! | ATGAAGTTTTTGAGTTTTGA+CGG | + | chr8_4:17920843-17920862 | Msa1316950:intron | 25.0% |
| !! | TTTGAAATTGGAATTTCAGA+TGG | + | chr8_4:17921596-17921615 | Msa1316950:intron | 25.0% |
| ! | TTGAAATTGGAATTTCAGAT+GGG | + | chr8_4:17921597-17921616 | Msa1316950:intron | 25.0% |
| ! | TGTGAATTCCACAATATATT+AGG | - | chr8_4:17921690-17921709 | None:intergenic | 25.0% |
| ! | TTATGGAAATGAATTTGATG+TGG | + | chr8_4:17921724-17921743 | Msa1316950:intron | 25.0% |
| !!! | ATAAAAAAGCATTAACTGTG+CGG | - | chr8_4:17921757-17921776 | None:intergenic | 25.0% |
| ! | CTGACAATTATATATGTACA+TGG | + | chr8_4:17921889-17921908 | Msa1316950:intron | 25.0% |
| !! | AGAATTTTGCATAAGCAATA+AGG | - | chr8_4:17921919-17921938 | None:intergenic | 25.0% |
| !! | TGAATTATTCATGGTGTTAA+GGG | - | chr8_4:17922507-17922526 | None:intergenic | 25.0% |
| !! | ATGAATTATTCATGGTGTTA+AGG | - | chr8_4:17922508-17922527 | None:intergenic | 25.0% |
| ! | AGAATAGAAACGTATATACA+TGG | + | chr8_4:17922918-17922937 | Msa1316950:intron | 25.0% |
| ! | AGAATAGAAACGTATATACA+TGG | + | chr8_4:17922918-17922937 | Msa1316950:intron | 25.0% |
| !! | TGCTAGAAGCATTTGAAAAT+CGG | + | chr8_4:17920765-17920784 | Msa1316950:intron | 30.0% |
| ATGAAATGAAAAAGCTGCAA+CGG | + | chr8_4:17920869-17920888 | Msa1316950:intron | 30.0% | |
| CAATAACTCTTGTCAATCTA+AGG | - | chr8_4:17921851-17921870 | None:intergenic | 30.0% | |
| AATTGTCAGATCTAGATTCA+GGG | - | chr8_4:17921878-17921897 | None:intergenic | 30.0% | |
| TAATTGTCAGATCTAGATTC+AGG | - | chr8_4:17921879-17921898 | None:intergenic | 30.0% | |
| TCAATGGTTGGATAAATTCT+AGG | - | chr8_4:17922010-17922029 | None:intergenic | 30.0% | |
| TATAAGAATGAACCAGTCAA+TGG | - | chr8_4:17922026-17922045 | None:intergenic | 30.0% | |
| GTTAAAGAAAGAAGAAAGCA+TGG | + | chr8_4:17922228-17922247 | Msa1316950:CDS | 30.0% | |
| AGTGATAGCTATATAGTCAA+AGG | - | chr8_4:17922334-17922353 | None:intergenic | 30.0% | |
| ! | AATTACCATCACAAGTATTG+AGG | - | chr8_4:17922456-17922475 | None:intergenic | 30.0% |
| AAGGGATATACAAAACTCAT+TGG | - | chr8_4:17922489-17922508 | None:intergenic | 30.0% | |
| AACCACTGATGAATTATTCA+TGG | - | chr8_4:17922516-17922535 | None:intergenic | 30.0% | |
| GTAATGACATGACATTAGAT+TGG | - | chr8_4:17922873-17922892 | None:intergenic | 30.0% | |
| ! | TGCTTTACTAGTTTCAGTTA+AGG | + | chr8_4:17922947-17922966 | Msa1316950:intron | 30.0% |
| ! | TGCTTTACTAGTTTCAGTTA+AGG | + | chr8_4:17922947-17922966 | Msa1316950:intron | 30.0% |
| AATGAATGTATAGATAGTCC+AGG | + | chr8_4:17923066-17923085 | Msa1316950:intron | 30.0% | |
| TAGTAACTATCTTCTTGGAA+GGG | - | chr8_4:17923197-17923216 | None:intergenic | 30.0% | |
| TTAGTAACTATCTTCTTGGA+AGG | - | chr8_4:17923198-17923217 | None:intergenic | 30.0% | |
| GAACTTAGTAACTATCTTCT+TGG | - | chr8_4:17923202-17923221 | None:intergenic | 30.0% | |
| TTTGATTACAAGTCTTGGAT+TGG | + | chr8_4:17923278-17923297 | Msa1316950:CDS | 30.0% | |
| TTGATTACAAGTCTTGGATT+GGG | + | chr8_4:17923279-17923298 | Msa1316950:CDS | 30.0% | |
| !!! | AGCAGATGGTTTTGTTATGT+CGG | - | chr8_4:17920367-17920386 | None:intergenic | 35.0% |
| TGCATTTCTAAGCTTCAGAT+CGG | + | chr8_4:17920556-17920575 | Msa1316950:intron | 35.0% | |
| ! | TGGAAAATCTCTGATAATGC+TGG | + | chr8_4:17921369-17921388 | Msa1316950:CDS | 35.0% |
| CTATCATGGATGATGCTATT+TGG | + | chr8_4:17921419-17921438 | Msa1316950:CDS | 35.0% | |
| GAATTTATCCAACCATTGAC+TGG | + | chr8_4:17922011-17922030 | Msa1316950:intron | 35.0% | |
| GAAACTATGTTGAAGACTCA+CGG | + | chr8_4:17922250-17922269 | Msa1316950:CDS | 35.0% | |
| TTTCTGGACAACATTAAACC+CGG | + | chr8_4:17922280-17922299 | Msa1316950:CDS | 35.0% | |
| CACCATGAATAATTCATCAG+TGG | + | chr8_4:17922511-17922530 | Msa1316950:intron | 35.0% | |
| TATTCTAATGCAAACCCTTG+CGG | - | chr8_4:17922550-17922569 | None:intergenic | 35.0% | |
| CAAGGGTTTGCATTAGAATA+AGG | + | chr8_4:17922550-17922569 | Msa1316950:intron | 35.0% | |
| TGCATTGTTCCTATATAAGC+AGG | - | chr8_4:17922609-17922628 | None:intergenic | 35.0% | |
| TATAGGAACAATGCAGACAT+TGG | + | chr8_4:17922614-17922633 | Msa1316950:intron | 35.0% | |
| TCTGTGAAGACTACGAAAAT+GGG | + | chr8_4:17922661-17922680 | Msa1316950:CDS | 35.0% | |
| ATATCAAGAAACGAGCTGAT+GGG | + | chr8_4:17922715-17922734 | Msa1316950:CDS | 35.0% | |
| CAGGTGTTTGACATCAAAAA+TGG | - | chr8_4:17922751-17922770 | None:intergenic | 35.0% | |
| ! | CATTTTTGATGTCAAACACC+TGG | + | chr8_4:17922749-17922768 | Msa1316950:CDS | 35.0% |
| ATGACATGACATTAGATTGG+TGG | - | chr8_4:17922870-17922889 | None:intergenic | 35.0% | |
| TTCCGAATGATTCTTGGTTT+AGG | + | chr8_4:17923119-17923138 | Msa1316950:intron | 35.0% | |
| TCCGAATGATTCTTGGTTTA+GGG | + | chr8_4:17923120-17923139 | Msa1316950:intron | 35.0% | |
| TCCCTAAACCAAGAATCATT+CGG | - | chr8_4:17923124-17923143 | None:intergenic | 35.0% | |
| CGGTATTTGATTACAAGTCT+TGG | + | chr8_4:17923273-17923292 | Msa1316950:CDS | 35.0% | |
| TACTGCATGAAAAGCAATCA+TGG | - | chr8_4:17923330-17923349 | None:intergenic | 35.0% | |
| CCATGAGAAAGTGGAATGAT+CGG | - | chr8_4:17920420-17920439 | None:intergenic | 40.0% | |
| AAAGGTTCGATGACGACATT+TGG | + | chr8_4:17921323-17921342 | Msa1316950:intron | 40.0% | |
| TAGCATCATCCATGATAGCA+CGG | - | chr8_4:17921417-17921436 | None:intergenic | 40.0% | |
| ! | AAGCTCTACACTTCAGCTTT+TGG | + | chr8_4:17921505-17921524 | Msa1316950:CDS | 40.0% |
| AGAATGAACCAGTCAATGGT+TGG | - | chr8_4:17922022-17922041 | None:intergenic | 40.0% | |
| TCTTCTTTCTTTAACTCCCC+CGG | - | chr8_4:17922223-17922242 | None:intergenic | 40.0% | |
| ACAACATTAAACCCGGAATC+TGG | + | chr8_4:17922287-17922306 | Msa1316950:CDS | 40.0% | |
| !! | AAGTATTGAGGTCACAAACC+GGG | - | chr8_4:17922444-17922463 | None:intergenic | 40.0% |
| !! | CAAGTATTGAGGTCACAAAC+CGG | - | chr8_4:17922445-17922464 | None:intergenic | 40.0% |
| TGTGACCTCAATACTTGTGA+TGG | + | chr8_4:17922448-17922467 | Msa1316950:CDS | 40.0% | |
| ! | GTTACTGTTTTGTACCGCAA+GGG | + | chr8_4:17922533-17922552 | Msa1316950:intron | 40.0% |
| CACGTTTCTCCTGCTTATAT+AGG | + | chr8_4:17922597-17922616 | Msa1316950:intron | 40.0% | |
| ! | CATTTTCGTAGTCTTCACAG+AGG | - | chr8_4:17922662-17922681 | None:intergenic | 40.0% |
| CTCTGTGAAGACTACGAAAA+TGG | + | chr8_4:17922660-17922679 | Msa1316950:CDS | 40.0% | |
| AAGACTACGAAAATGGGAAC+TGG | + | chr8_4:17922667-17922686 | Msa1316950:CDS | 40.0% | |
| AGACTACGAAAATGGGAACT+GGG | + | chr8_4:17922668-17922687 | Msa1316950:CDS | 40.0% | |
| GATATCAAGAAACGAGCTGA+TGG | + | chr8_4:17922714-17922733 | Msa1316950:CDS | 40.0% | |
| TATCAAGAAACGAGCTGATG+GGG | + | chr8_4:17922716-17922735 | Msa1316950:CDS | 40.0% | |
| TGAAGCTTCCGAATGATTCT+TGG | + | chr8_4:17923113-17923132 | Msa1316950:intron | 40.0% | |
| ! | TTACAAGTCTTGGATTGGGA+AGG | + | chr8_4:17923283-17923302 | Msa1316950:CDS | 40.0% |
| GGATTGGGAAGGATAATGAA+TGG | + | chr8_4:17923294-17923313 | Msa1316950:CDS | 40.0% | |
| TGAAAAGCAATCATGGCCTT+GGG | - | chr8_4:17923323-17923342 | None:intergenic | 40.0% | |
| ATGAAAAGCAATCATGGCCT+TGG | - | chr8_4:17923324-17923343 | None:intergenic | 40.0% | |
| CCGATCATTCCACTTTCTCA+TGG | + | chr8_4:17920417-17920436 | Msa1316950:CDS | 45.0% | |
| GAGAGAGAACCATGAGAAAG+TGG | - | chr8_4:17920429-17920448 | None:intergenic | 45.0% | |
| GACTGAGATAGCGAAGTTTC+TGG | + | chr8_4:17921345-17921364 | Msa1316950:CDS | 45.0% | |
| ! | GAGATAGCGAAGTTTCTGGA+TGG | + | chr8_4:17921349-17921368 | Msa1316950:CDS | 45.0% |
| ! | GAACATCGATGAAAGCGTGT+AGG | - | chr8_4:17921540-17921559 | None:intergenic | 45.0% |
| CTATCAGATTGGATGCGCAT+TGG | + | chr8_4:17922145-17922164 | Msa1316950:intron | 45.0% | |
| GAGGGCTACTGAAGATTCAA+AGG | - | chr8_4:17922179-17922198 | None:intergenic | 45.0% | |
| ATTCAGTCTCTCTGTCAGGA+GGG | - | chr8_4:17922197-17922216 | None:intergenic | 45.0% | |
| AATTCAGTCTCTCTGTCAGG+AGG | - | chr8_4:17922198-17922217 | None:intergenic | 45.0% | |
| GGAAATTCAGTCTCTCTGTC+AGG | - | chr8_4:17922201-17922220 | None:intergenic | 45.0% | |
| GACAGAGAGACTGAATTTCC+CGG | + | chr8_4:17922201-17922220 | Msa1316950:CDS | 45.0% | |
| ACAGAGAGACTGAATTTCCC+GGG | + | chr8_4:17922202-17922221 | Msa1316950:CDS | 45.0% | |
| CTTCTTTCTTTAACTCCCCC+GGG | - | chr8_4:17922222-17922241 | None:intergenic | 45.0% | |
| AGTACCAGCAATCCAGATTC+CGG | - | chr8_4:17922302-17922321 | None:intergenic | 45.0% | |
| ! | GGTTACTGTTTTGTACCGCA+AGG | + | chr8_4:17922532-17922551 | Msa1316950:intron | 45.0% |
| CAATGCAGACATTGGATGCA+AGG | + | chr8_4:17922622-17922641 | Msa1316950:CDS | 45.0% | |
| AAATGGGAACTGGGATTACG+AGG | + | chr8_4:17922677-17922696 | Msa1316950:CDS | 45.0% | |
| AACTGGGATTACGAGGTTGT+AGG | + | chr8_4:17922684-17922703 | Msa1316950:CDS | 45.0% | |
| GTCAACTTACCAACAGTCAG+TGG | + | chr8_4:17922809-17922828 | Msa1316950:intron | 45.0% | |
| ! | TTAACAAGGCCACTGACTGT+TGG | - | chr8_4:17922821-17922840 | None:intergenic | 45.0% |
| GGATAATGAATGGCAACCCA+AGG | + | chr8_4:17923304-17923323 | Msa1316950:CDS | 45.0% | |
| !!! | GTTTTAATTTTTAAATTAAA+TGG | + | chr8_4:17923247-17923266 | Msa1316950:intron | 5.0% |
| TTATGTCGGATTCGCTTCGC+CGG | - | chr8_4:17920353-17920372 | None:intergenic | 50.0% | |
| AGGAGAGTTGCAAGAGCAGA+TGG | - | chr8_4:17920381-17920400 | None:intergenic | 50.0% | |
| GAATGATCGGAGAGAAAGCG+AGG | - | chr8_4:17920407-17920426 | None:intergenic | 50.0% | |
| CATCATCCATGATAGCACGG+CGG | - | chr8_4:17921414-17921433 | None:intergenic | 50.0% | |
| GTGGAGGAGATGGAACTTGA+AGG | - | chr8_4:17921465-17921484 | None:intergenic | 50.0% | |
| TTGCTCCACTTGAATGCCAC+AGG | - | chr8_4:17921487-17921506 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCCTGCTGA+CGG | - | chr8_4:17921640-17921659 | None:intergenic | 50.0% | |
| CAGAGAGACTGAATTTCCCG+GGG | + | chr8_4:17922203-17922222 | Msa1316950:CDS | 50.0% | |
| AGAGAGACTGAATTTCCCGG+GGG | + | chr8_4:17922204-17922223 | Msa1316950:CDS | 50.0% | |
| !! | GACTCACGGTTGTTGCTTTC+TGG | + | chr8_4:17922264-17922283 | Msa1316950:CDS | 50.0% |
| AAACCCGGAATCTGGATTGC+TGG | + | chr8_4:17922295-17922314 | Msa1316950:CDS | 50.0% | |
| GTACCAGCAATCCAGATTCC+GGG | - | chr8_4:17922301-17922320 | None:intergenic | 50.0% | |
| TCTGGATTGCTGGTACTCTC+TGG | + | chr8_4:17922305-17922324 | Msa1316950:intron | 50.0% | |
| CAGATGTAGAAGAACTCGCC+AGG | - | chr8_4:17922770-17922789 | None:intergenic | 50.0% | |
| CTGGCGAGTTCTTCTACATC+TGG | + | chr8_4:17922768-17922787 | Msa1316950:CDS | 50.0% | |
| TGATAGCACGGCGGAACCAT+CGG | - | chr8_4:17921405-17921424 | None:intergenic | 55.0% | |
| ATGGTTCCGCCGTGCTATCA+TGG | + | chr8_4:17921405-17921424 | Msa1316950:CDS | 55.0% | |
| AGTTCCATCTCCTCCACCTG+TGG | + | chr8_4:17921468-17921487 | Msa1316950:CDS | 55.0% | |
| AATGCCACAGGTGGAGGAGA+TGG | - | chr8_4:17921475-17921494 | None:intergenic | 55.0% | |
| CACTTGAATGCCACAGGTGG+AGG | - | chr8_4:17921481-17921500 | None:intergenic | 55.0% | |
| CTCCACCTGTGGCATTCAAG+TGG | + | chr8_4:17921479-17921498 | Msa1316950:CDS | 55.0% | |
| CTCCACTTGAATGCCACAGG+TGG | - | chr8_4:17921484-17921503 | None:intergenic | 55.0% | |
| CTCCTACAAGTTCCGTCAGC+AGG | + | chr8_4:17921625-17921644 | Msa1316950:CDS | 55.0% | |
| CTCCTGCTGACGGAACTTGT+AGG | - | chr8_4:17921630-17921649 | None:intergenic | 55.0% | |
| ! | CGTCAGCAGGAGAAGCACAT+TGG | + | chr8_4:17921638-17921657 | Msa1316950:CDS | 55.0% |
| AACGCTACTTCCTCCGACGC+CGG | + | chr8_4:17920317-17920336 | Msa1316950:CDS | 60.0% | |
| TCGGAGAGAAAGCGAGGACG+AGG | - | chr8_4:17920401-17920420 | None:intergenic | 60.0% | |
| TGCTGGCAGCGACAAACCGA+TGG | + | chr8_4:17921386-17921405 | Msa1316950:CDS | 60.0% | |
| TCTGCAGCTTGTGCGATGCC+CGG | + | chr8_4:17922423-17922442 | Msa1316950:CDS | 60.0% | |
| AAACGAGCTGATGGGGCTGC+TGG | + | chr8_4:17922723-17922742 | Msa1316950:CDS | 60.0% | |
| CTTCGCCGGAGGCAGTTCTC+CGG | - | chr8_4:17920339-17920358 | None:intergenic | 65.0% | |
| TGTCGGATTCGCTTCGCCGG+AGG | - | chr8_4:17920350-17920369 | None:intergenic | 65.0% | |
| ! | AGGCAGTTCTCCGGCGTCGG+AGG | - | chr8_4:17920330-17920349 | None:intergenic | 70.0% |
| CGGAGGCAGTTCTCCGGCGT+CGG | - | chr8_4:17920333-17920352 | None:intergenic | 70.0% | |
| CGACGCCGGAGAACTGCCTC+CGG | + | chr8_4:17920331-17920350 | Msa1316950:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 17920299 | 17923385 | 17920299 | ID=Msa1316950;Name=Msa1316950 |
| chr8_4 | mRNA | 17920299 | 17923385 | 17920299 | ID=Msa1316950-mRNA-1;Parent=Msa1316950;Name=Msa1316950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|7|0|293 |
| chr8_4 | exon | 17920299 | 17920438 | 17920299 | ID=Msa1316950-mRNA-1:exon:6607;Parent=Msa1316950-mRNA-1 |
| chr8_4 | exon | 17921327 | 17921526 | 17921327 | ID=Msa1316950-mRNA-1:exon:6608;Parent=Msa1316950-mRNA-1 |
| chr8_4 | exon | 17921615 | 17921659 | 17921615 | ID=Msa1316950-mRNA-1:exon:6609;Parent=Msa1316950-mRNA-1 |
| chr8_4 | exon | 17922152 | 17922316 | 17922152 | ID=Msa1316950-mRNA-1:exon:6610;Parent=Msa1316950-mRNA-1 |
| chr8_4 | exon | 17922422 | 17922469 | 17922422 | ID=Msa1316950-mRNA-1:exon:6611;Parent=Msa1316950-mRNA-1 |
| chr8_4 | exon | 17922619 | 17922789 | 17922619 | ID=Msa1316950-mRNA-1:exon:6612;Parent=Msa1316950-mRNA-1 |
| chr8_4 | exon | 17923273 | 17923385 | 17923273 | ID=Msa1316950-mRNA-1:exon:6613;Parent=Msa1316950-mRNA-1 |
| chr8_4 | CDS | 17920299 | 17920438 | 17920299 | ID=Msa1316950-mRNA-1:cds;Parent=Msa1316950-mRNA-1 |
| chr8_4 | CDS | 17921327 | 17921526 | 17921327 | ID=Msa1316950-mRNA-1:cds;Parent=Msa1316950-mRNA-1 |
| chr8_4 | CDS | 17921615 | 17921659 | 17921615 | ID=Msa1316950-mRNA-1:cds;Parent=Msa1316950-mRNA-1 |
| chr8_4 | CDS | 17922152 | 17922316 | 17922152 | ID=Msa1316950-mRNA-1:cds;Parent=Msa1316950-mRNA-1 |
| chr8_4 | CDS | 17922422 | 17922469 | 17922422 | ID=Msa1316950-mRNA-1:cds;Parent=Msa1316950-mRNA-1 |
| chr8_4 | CDS | 17922619 | 17922789 | 17922619 | ID=Msa1316950-mRNA-1:cds;Parent=Msa1316950-mRNA-1 |
| chr8_4 | CDS | 17923273 | 17923385 | 17923273 | ID=Msa1316950-mRNA-1:cds;Parent=Msa1316950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
