Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316930 | sp|Q9M365|FB331_ARATH | 59.701 | 268 | 108 | 0 | 26 | 293 | 66 | 333 | 4.54e-120 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316930 | G8A2W2 | 94.198 | 293 | 17 | 0 | 1 | 293 | 1 | 293 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0792290 | Msa1316930 | 0.954805 | 1.288556e-112 | -8.615850e-47 |
| Msa1245820 | Msa1316930 | 0.927200 | 1.636989e-91 | -8.615850e-47 |
| Msa1316930 | Msa1316950 | 0.872644 | 2.714011e-67 | -8.615850e-47 |
| Msa1037200 | Msa1316930 | 0.801246 | 9.859186e-49 | -8.615850e-47 |
| Msa1077460 | Msa1316930 | 0.812117 | 4.982332e-51 | -8.615850e-47 |
| Msa1079100 | Msa1316930 | 0.811114 | 8.229472e-51 | -8.615850e-47 |
| Msa1096580 | Msa1316930 | 0.808613 | 2.842199e-50 | -8.615850e-47 |
| Msa1124010 | Msa1316930 | 0.809889 | 1.513449e-50 | -8.615850e-47 |
| Msa1164120 | Msa1316930 | 0.809830 | 1.558909e-50 | -8.615850e-47 |
| Msa1177100 | Msa1316930 | 0.834375 | 3.108043e-56 | -8.615850e-47 |
| Msa1177130 | Msa1316930 | 0.894945 | 1.529013e-75 | -8.615850e-47 |
| Msa1177160 | Msa1316930 | 0.960814 | 5.526630e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316930 | MtrunA17_Chr8g0347091 | 94.198 | 293 | 17 | 0 | 1 | 293 | 1 | 293 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316930 | AT3G61730.1 | 59.701 | 268 | 108 | 0 | 26 | 293 | 66 | 333 | 4.62e-121 | 351 |
| Msa1316930 | AT5G36000.1 | 56.343 | 268 | 117 | 0 | 26 | 293 | 62 | 329 | 2.00e-114 | 334 |
| Msa1316930 | AT3G62500.1 | 49.390 | 164 | 62 | 3 | 129 | 292 | 178 | 320 | 4.40e-43 | 151 |
| Msa1316930 | AT3G62500.2 | 49.390 | 164 | 62 | 3 | 129 | 292 | 178 | 320 | 4.88e-43 | 152 |
Find 76 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 8_4:+17901656 | Msa1316930:CDS |
| GACTGAGATAGCGAAGTTTC+TGG | 0.200830 | 8_4:+17900654 | Msa1316930:CDS |
| CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 8_4:+17902054 | Msa1316930:CDS |
| CTATCATGGATGATGCTATT+TGG | 0.269492 | 8_4:+17900728 | Msa1316930:CDS |
| GATATCAAGAAACGAGCTTA+TGG | 0.282438 | 8_4:+17902108 | Msa1316930:CDS |
| AAGCTCTACACTTCAGCTTT+TGG | 0.288606 | 8_4:+17900814 | Msa1316930:CDS |
| CCGATCATCCCACTTTCTCT+TGG | 0.358777 | 8_4:+17899699 | Msa1316930:CDS |
| GAAGGTTTGATGACGACATT+TGG | 0.363041 | 8_4:+17900632 | Msa1316930:intron |
| GTACCAGCAATCCAGATTCC+AGG | 0.388870 | 8_4:-17901690 | None:intergenic |
| AAACCTGGAATCTGGATTGC+TGG | 0.401140 | 8_4:+17901687 | Msa1316930:CDS |
| ACAACATTAAACCTGGAATC+TGG | 0.402861 | 8_4:+17901679 | Msa1316930:CDS |
| ATGAAAAGCAATCATGGTCT+TGG | 0.408754 | 8_4:-17902645 | None:intergenic |
| TTTGATTACAAGTCATGGAT+TGG | 0.411304 | 8_4:+17902602 | Msa1316930:CDS |
| ATATCAAGAAACGAGCTTAT+GGG | 0.412617 | 8_4:+17902109 | Msa1316930:CDS |
| GGATTGGGAAGGATAATTAC+TGG | 0.420053 | 8_4:+17902618 | Msa1316930:CDS |
| AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 8_4:+17902061 | Msa1316930:CDS |
| ATGGTTCCGCCGTGCTATCA+TGG | 0.453543 | 8_4:+17900714 | Msa1316930:CDS |
| CACTTGAATGCCACAGGTGG+AGG | 0.462347 | 8_4:-17900787 | None:intergenic |
| CTTCGCCGGTGGCAGTTCTC+CGG | 0.464227 | 8_4:-17899618 | None:intergenic |
| TTGATTACAAGTCATGGATT+GGG | 0.468371 | 8_4:+17902603 | Msa1316930:CDS |
| TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 8_4:+17902055 | Msa1316930:CDS |
| AAGAGAGAACCAAGAGAAAG+TGG | 0.476826 | 8_4:-17899708 | None:intergenic |
| TGCTGCATGAAAAGCAATCA+TGG | 0.479901 | 8_4:-17902651 | None:intergenic |
| GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 8_4:+17901620 | Msa1316930:CDS |
| CAAGTATTGAGGTCACAAAC+CGG | 0.486887 | 8_4:-17901833 | None:intergenic |
| AAACGAGCTTATGGGGCTGC+TGG | 0.488804 | 8_4:+17902117 | Msa1316930:CDS |
| CGGTATTTGATTACAAGTCA+TGG | 0.490207 | 8_4:+17902597 | Msa1316930:CDS |
| CTCCTACAAGTTCCGTCAGC+AGG | 0.492280 | 8_4:+17900935 | Msa1316930:CDS |
| GAAAATTCAGTCTCTCTGTC+AGG | 0.492809 | 8_4:-17901590 | None:intergenic |
| CCAAGAGAAAGTGGGATGAT+CGG | 0.496416 | 8_4:-17899699 | None:intergenic |
| TCGGAGAGAAAGCGAGGACG+AGG | 0.497635 | 8_4:-17899680 | None:intergenic |
| CTGGCGAGTTCTTCTACGTC+TGG | 0.501579 | 8_4:+17902162 | Msa1316930:CDS |
| TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 8_4:+17901814 | Msa1316930:CDS |
| AGGAGAGTTGCAAGAGCAGA+TGG | 0.504948 | 8_4:-17899660 | None:intergenic |
| AATGCCACAGGTGGAGGAGA+TGG | 0.508135 | 8_4:-17900781 | None:intergenic |
| TCTTCTTTCTTTAACTCCCC+CGG | 0.510064 | 8_4:-17901612 | None:intergenic |
| CGGTGGCAGTTCTCCGGCGT+CGG | 0.514667 | 8_4:-17899612 | None:intergenic |
| TGGCAGTTCTCCGGCGTCGG+AGG | 0.518218 | 8_4:-17899609 | None:intergenic |
| CTCCACCTGTGGCATTCAAG+TGG | 0.519260 | 8_4:+17900788 | Msa1316930:CDS |
| CTCCTGCTGACGGAACTTGT+AGG | 0.523611 | 8_4:-17900937 | None:intergenic |
| ACTAATTTACAAGAAAATCA+AGG | 0.528332 | 8_4:+17902683 | Msa1316930:CDS |
| TTGCTCCACTTGAATGCCAC+AGG | 0.532015 | 8_4:-17900793 | None:intergenic |
| GTGGAGGAGATGGAACTTGA+AGG | 0.535718 | 8_4:-17900771 | None:intergenic |
| AATTACCATCACAAGTATTG+AGG | 0.538205 | 8_4:-17901844 | None:intergenic |
| TATAGGAACAATGCAGACAT+TGG | 0.539902 | 8_4:+17902008 | Msa1316930:intron |
| AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 8_4:+17902078 | Msa1316930:CDS |
| TGAAAAGCAATCATGGTCTT+GGG | 0.544175 | 8_4:-17902644 | None:intergenic |
| AACGCTACTTCCTCCGACGC+CGG | 0.546509 | 8_4:+17899599 | Msa1316930:CDS |
| TTTCTGGACAACATTAAACC+TGG | 0.556196 | 8_4:+17901672 | Msa1316930:CDS |
| TGATAGCACGGCGGAACCAT+CGG | 0.557930 | 8_4:-17900711 | None:intergenic |
| CAATGCAGACATTGGATGCA+AGG | 0.559581 | 8_4:+17902016 | Msa1316930:CDS |
| CGTCGGATTCGCTTCGCCGG+TGG | 0.564375 | 8_4:-17899629 | None:intergenic |
| GAGGGCCACTGAAGAATCAA+AGG | 0.570525 | 8_4:-17901568 | None:intergenic |
| CTCCACTTGAATGCCACAGG+TGG | 0.571927 | 8_4:-17900790 | None:intergenic |
| AGTTCCATCTCCTCCACCTG+TGG | 0.576848 | 8_4:+17900777 | Msa1316930:CDS |
| TGGAAAGTCTCTGATAATGC+TGG | 0.577477 | 8_4:+17900678 | Msa1316930:CDS |
| TATCAAGAAACGAGCTTATG+GGG | 0.585752 | 8_4:+17902110 | Msa1316930:CDS |
| CTATCAGATTGGATGCGCAT+CGG | 0.586986 | 8_4:+17901537 | Msa1316930:intron |
| CAGACGTAGAAGAACTCGCC+AGG | 0.599890 | 8_4:-17902161 | None:intergenic |
| AAGTATTGAGGTCACAAACC+GGG | 0.600506 | 8_4:-17901832 | None:intergenic |
| TGTGACCTCAATACTTGTGA+TGG | 0.607442 | 8_4:+17901839 | Msa1316930:CDS |
| GAGATAGCGAAGTTTCTGGA+TGG | 0.611982 | 8_4:+17900658 | Msa1316930:CDS |
| AATTCAGTCTCTCTGTCAGG+AGG | 0.618594 | 8_4:-17901587 | None:intergenic |
| CAATGTGCTTCTCCTGCTGA+CGG | 0.619980 | 8_4:-17900947 | None:intergenic |
| GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 8_4:+17901642 | Msa1316930:CDS |
| TGCTGGCAGCGACAAACCGA+TGG | 0.623760 | 8_4:+17900695 | Msa1316930:CDS |
| AGAGAGAACCAAGAGAAAGT+GGG | 0.624109 | 8_4:-17899707 | None:intergenic |
| TAGCATCATCCATGATAGCA+CGG | 0.625465 | 8_4:-17900723 | None:intergenic |
| TTACAAGTCATGGATTGGGA+AGG | 0.625946 | 8_4:+17902607 | Msa1316930:CDS |
| CGTCAGCAGGAGAAGCACAT+TGG | 0.627665 | 8_4:+17900948 | Msa1316930:CDS |
| CGACGCCGGAGAACTGCCAC+CGG | 0.630367 | 8_4:+17899613 | Msa1316930:CDS |
| ATTCAGTCTCTCTGTCAGGA+GGG | 0.634339 | 8_4:-17901586 | None:intergenic |
| AGACTACGAAAATGGGAACT+GGG | 0.645326 | 8_4:+17902062 | Msa1316930:CDS |
| GGATGATCGGAGAGAAAGCG+AGG | 0.656826 | 8_4:-17899686 | None:intergenic |
| AAATGGGAACTGGGATTACG+AGG | 0.675337 | 8_4:+17902071 | Msa1316930:CDS |
| CATCATCCATGATAGCACGG+CGG | 0.806408 | 8_4:-17900720 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATCTATAGAAAATA+TGG | - | chr8_4:17900585-17900604 | None:intergenic | 10.0% |
| !!! | GTTTTAATCTTTAAATTAAA+TGG | + | chr8_4:17902571-17902590 | Msa1316930:intron | 10.0% |
| !!! | TTTTCTATAACTTTTATATC+TGG | + | chr8_4:17900430-17900449 | Msa1316930:intron | 15.0% |
| !!! | AGAAATTCAGTTTGAATTTT+CGG | + | chr8_4:17899867-17899886 | Msa1316930:intron | 20.0% |
| !! | TCAAATATTCGAAATCAAAT+CGG | - | chr8_4:17900182-17900201 | None:intergenic | 20.0% |
| !! | TATCTGGAAATAATCAATTA+AGG | + | chr8_4:17900446-17900465 | Msa1316930:intron | 20.0% |
| !! | TTTCGAAATCAATGTTAATT+AGG | - | chr8_4:17900892-17900911 | None:intergenic | 20.0% |
| !!! | ATTAACATTGATTTCGAAAT+TGG | + | chr8_4:17900893-17900912 | Msa1316930:intron | 20.0% |
| !!! | AGTTAATGCTTTTTATCATT+TGG | + | chr8_4:17901083-17901102 | Msa1316930:intron | 20.0% |
| !!! | GTTAATGCTTTTTATCATTT+GGG | + | chr8_4:17901084-17901103 | Msa1316930:intron | 20.0% |
| !! | TATCATTTGGGAATATTAAA+AGG | + | chr8_4:17901096-17901115 | Msa1316930:intron | 20.0% |
| !! | ATCATTTGGGAATATTAAAA+GGG | + | chr8_4:17901097-17901116 | Msa1316930:intron | 20.0% |
| !! | TATAATATGTTCTATCAGAT+TGG | + | chr8_4:17901526-17901545 | Msa1316930:intron | 20.0% |
| !! | CTTAAAGAAAAACATTAACA+AGG | - | chr8_4:17902229-17902248 | None:intergenic | 20.0% |
| !! | AGAGTAGAAACATATATATA+TGG | + | chr8_4:17902311-17902330 | Msa1316930:intron | 20.0% |
| !!! | TTTTGAAATTAATTTGTTCC+TGG | - | chr8_4:17902411-17902430 | None:intergenic | 20.0% |
| !! | ACTAATTTACAAGAAAATCA+AGG | + | chr8_4:17902683-17902702 | Msa1316930:CDS | 20.0% |
| !!! | ATGAAGTTTTTGAGTTTTGA+CGG | + | chr8_4:17900133-17900152 | Msa1316930:intron | 25.0% |
| ! | TGTGAATCTCACAATATATT+AGG | - | chr8_4:17901000-17901019 | None:intergenic | 25.0% |
| !! | AGAATTTTGCATAAGCAATA+AGG | - | chr8_4:17901311-17901330 | None:intergenic | 25.0% |
| ! | TATAAGAATGAATCAGTCAA+TGG | - | chr8_4:17901418-17901437 | None:intergenic | 25.0% |
| ! | GTTATATTGTCAAAGATAAC+TGG | - | chr8_4:17901719-17901738 | None:intergenic | 25.0% |
| !! | TGAATTATTCATGGTGTTAA+GGG | - | chr8_4:17901898-17901917 | None:intergenic | 25.0% |
| !! | ATGAATTATTCATGGTGTTA+AGG | - | chr8_4:17901899-17901918 | None:intergenic | 25.0% |
| !!! | CTTTTTACCAGTTTAAGTTA+AGG | + | chr8_4:17902342-17902361 | Msa1316930:intron | 25.0% |
| ! | ATCTTTAAATTAAATGGCAG+CGG | + | chr8_4:17902577-17902596 | Msa1316930:intron | 25.0% |
| !! | TGCTAGAAGCATTTGAAAAT+CGG | + | chr8_4:17900055-17900074 | Msa1316930:intron | 30.0% |
| !! | TTTGATTCTGATTTGTTCGA+CGG | + | chr8_4:17900197-17900216 | Msa1316930:intron | 30.0% |
| TTAATCCGAATGCTTAATGA+AGG | + | chr8_4:17900614-17900633 | Msa1316930:intron | 30.0% | |
| TCAAACCTTCATTAAGCATT+CGG | - | chr8_4:17900622-17900641 | None:intergenic | 30.0% | |
| TCGAAATTGGAAATTTCAGA+TGG | + | chr8_4:17900906-17900925 | Msa1316930:intron | 30.0% | |
| CGAAATTGGAAATTTCAGAT+GGG | + | chr8_4:17900907-17900926 | Msa1316930:intron | 30.0% | |
| CAGTTATGGAAATGAATTTG+AGG | + | chr8_4:17901044-17901063 | Msa1316930:intron | 30.0% | |
| TTATGGAAATGAATTTGAGG+TGG | + | chr8_4:17901047-17901066 | Msa1316930:intron | 30.0% | |
| !! | GATAAAAAGCATTAACTGTG+CGG | - | chr8_4:17901080-17901099 | None:intergenic | 30.0% |
| CATTGTCAGATCTAGATTTA+GGG | - | chr8_4:17901270-17901289 | None:intergenic | 30.0% | |
| TCATTGTCAGATCTAGATTT+AGG | - | chr8_4:17901271-17901290 | None:intergenic | 30.0% | |
| CTGACAATGATATATGTACA+TGG | + | chr8_4:17901281-17901300 | Msa1316930:intron | 30.0% | |
| ! | TTTTTCCTTTGATTCTTCAG+TGG | + | chr8_4:17901563-17901582 | Msa1316930:CDS | 30.0% |
| GTTAAAGAAAGAAGAAAGCA+TGG | + | chr8_4:17901620-17901639 | Msa1316930:CDS | 30.0% | |
| ! | AATTACCATCACAAGTATTG+AGG | - | chr8_4:17901847-17901866 | None:intergenic | 30.0% |
| AAGGGATATACAAAACTCAT+TGG | - | chr8_4:17901880-17901899 | None:intergenic | 30.0% | |
| AACCACTGATGAATTATTCA+TGG | - | chr8_4:17901907-17901926 | None:intergenic | 30.0% | |
| ATATCAAGAAACGAGCTTAT+GGG | + | chr8_4:17902109-17902128 | Msa1316930:CDS | 30.0% | |
| AATGACATGACATTAGATTG+TGG | - | chr8_4:17902264-17902283 | None:intergenic | 30.0% | |
| AATGAATGTATAGATAGTCC+AGG | + | chr8_4:17902390-17902409 | Msa1316930:intron | 30.0% | |
| TAGTAACTATCTTCTTGGAA+GGG | - | chr8_4:17902521-17902540 | None:intergenic | 30.0% | |
| TTAGTAACTATCTTCTTGGA+AGG | - | chr8_4:17902522-17902541 | None:intergenic | 30.0% | |
| GAACTTAGTAACTATCTTCT+TGG | - | chr8_4:17902526-17902545 | None:intergenic | 30.0% | |
| AGAAGATAGTTACTAAGTTC+TGG | + | chr8_4:17902526-17902545 | Msa1316930:intron | 30.0% | |
| TTTGATTACAAGTCATGGAT+TGG | + | chr8_4:17902602-17902621 | Msa1316930:CDS | 30.0% | |
| TTGATTACAAGTCATGGATT+GGG | + | chr8_4:17902603-17902622 | Msa1316930:CDS | 30.0% | |
| !! | TTGATTCTGATTTGTTCGAC+GGG | + | chr8_4:17900198-17900217 | Msa1316930:intron | 35.0% |
| AGCTATAGAAAATTAGCGAG+TGG | - | chr8_4:17900498-17900517 | None:intergenic | 35.0% | |
| CTATCATGGATGATGCTATT+TGG | + | chr8_4:17900728-17900747 | Msa1316930:CDS | 35.0% | |
| ATAGATTCCACACACAGTTA+TGG | + | chr8_4:17901030-17901049 | Msa1316930:intron | 35.0% | |
| TTCATTTCCATAACTGTGTG+TGG | - | chr8_4:17901040-17901059 | None:intergenic | 35.0% | |
| CAGTAACTCTTGTCAATCTA+AGG | - | chr8_4:17901243-17901262 | None:intergenic | 35.0% | |
| TCAATGGCTGGATAAATTCT+AGG | - | chr8_4:17901402-17901421 | None:intergenic | 35.0% | |
| GAAACTATGTTGAAGACTCA+CGG | + | chr8_4:17901642-17901661 | Msa1316930:CDS | 35.0% | |
| TTTCTGGACAACATTAAACC+TGG | + | chr8_4:17901672-17901691 | Msa1316930:CDS | 35.0% | |
| ACAACATTAAACCTGGAATC+TGG | + | chr8_4:17901679-17901698 | Msa1316930:CDS | 35.0% | |
| CACCATGAATAATTCATCAG+TGG | + | chr8_4:17901902-17901921 | Msa1316930:intron | 35.0% | |
| ! | GTTACTGTTTTGTACTGCAA+GGG | + | chr8_4:17901924-17901943 | Msa1316930:intron | 35.0% |
| GGGTTTGCGTTAGAATAATA+TGG | + | chr8_4:17901944-17901963 | Msa1316930:intron | 35.0% | |
| CATGTTTCTCCTGCTTATAT+AGG | + | chr8_4:17901991-17902010 | Msa1316930:intron | 35.0% | |
| TGCATTGTTCCTATATAAGC+AGG | - | chr8_4:17902003-17902022 | None:intergenic | 35.0% | |
| TATAGGAACAATGCAGACAT+TGG | + | chr8_4:17902008-17902027 | Msa1316930:intron | 35.0% | |
| TCTGTGAAGACTACGAAAAT+GGG | + | chr8_4:17902055-17902074 | Msa1316930:CDS | 35.0% | |
| GATATCAAGAAACGAGCTTA+TGG | + | chr8_4:17902108-17902127 | Msa1316930:CDS | 35.0% | |
| TATCAAGAAACGAGCTTATG+GGG | + | chr8_4:17902110-17902129 | Msa1316930:CDS | 35.0% | |
| CAGGTGTTTCACATCAAAAA+TGG | - | chr8_4:17902145-17902164 | None:intergenic | 35.0% | |
| ! | CATTTTTGATGTGAAACACC+TGG | + | chr8_4:17902143-17902162 | Msa1316930:CDS | 35.0% |
| TGCGTAACCTTAACTTAAAC+TGG | - | chr8_4:17902352-17902371 | None:intergenic | 35.0% | |
| CGGTATTTGATTACAAGTCA+TGG | + | chr8_4:17902597-17902616 | Msa1316930:CDS | 35.0% | |
| TGAAAAGCAATCATGGTCTT+GGG | - | chr8_4:17902647-17902666 | None:intergenic | 35.0% | |
| ATGAAAAGCAATCATGGTCT+TGG | - | chr8_4:17902648-17902667 | None:intergenic | 35.0% | |
| !!! | AGCAGATGGTTTTGTTACGT+CGG | - | chr8_4:17899649-17899668 | None:intergenic | 40.0% |
| AGAGAGAACCAAGAGAAAGT+GGG | - | chr8_4:17899710-17899729 | None:intergenic | 40.0% | |
| AAGAGAGAACCAAGAGAAAG+TGG | - | chr8_4:17899711-17899730 | None:intergenic | 40.0% | |
| !! | GAAGGTTTGATGACGACATT+TGG | + | chr8_4:17900632-17900651 | Msa1316930:intron | 40.0% |
| ! | TGGAAAGTCTCTGATAATGC+TGG | + | chr8_4:17900678-17900697 | Msa1316930:CDS | 40.0% |
| TAGCATCATCCATGATAGCA+CGG | - | chr8_4:17900726-17900745 | None:intergenic | 40.0% | |
| ! | AAGCTCTACACTTCAGCTTT+TGG | + | chr8_4:17900814-17900833 | Msa1316930:CDS | 40.0% |
| GGAATATTAAAAGGGCAACC+CGG | + | chr8_4:17901105-17901124 | Msa1316930:intron | 40.0% | |
| ! | AGAAGATTGATGACTCACAC+AGG | - | chr8_4:17901212-17901231 | None:intergenic | 40.0% |
| AGAATGAATCAGTCAATGGC+TGG | - | chr8_4:17901414-17901433 | None:intergenic | 40.0% | |
| GAAAATTCAGTCTCTCTGTC+AGG | - | chr8_4:17901593-17901612 | None:intergenic | 40.0% | |
| ! | GACAGAGAGACTGAATTTTC+CGG | + | chr8_4:17901593-17901612 | Msa1316930:CDS | 40.0% |
| ! | ACAGAGAGACTGAATTTTCC+GGG | + | chr8_4:17901594-17901613 | Msa1316930:CDS | 40.0% |
| TCTTCTTTCTTTAACTCCCC+CGG | - | chr8_4:17901615-17901634 | None:intergenic | 40.0% | |
| !! | AAGTATTGAGGTCACAAACC+GGG | - | chr8_4:17901835-17901854 | None:intergenic | 40.0% |
| !! | CAAGTATTGAGGTCACAAAC+CGG | - | chr8_4:17901836-17901855 | None:intergenic | 40.0% |
| TGTGACCTCAATACTTGTGA+TGG | + | chr8_4:17901839-17901858 | Msa1316930:CDS | 40.0% | |
| ! | GGTTACTGTTTTGTACTGCA+AGG | + | chr8_4:17901923-17901942 | Msa1316930:intron | 40.0% |
| ! | CATTTTCGTAGTCTTCACAG+AGG | - | chr8_4:17902056-17902075 | None:intergenic | 40.0% |
| CTCTGTGAAGACTACGAAAA+TGG | + | chr8_4:17902054-17902073 | Msa1316930:CDS | 40.0% | |
| AAGACTACGAAAATGGGAAC+TGG | + | chr8_4:17902061-17902080 | Msa1316930:CDS | 40.0% | |
| AGACTACGAAAATGGGAACT+GGG | + | chr8_4:17902062-17902081 | Msa1316930:CDS | 40.0% | |
| CTCCGAATGATTCTTGGTTT+GGG | + | chr8_4:17902443-17902462 | Msa1316930:intron | 40.0% | |
| ! | TCCGAATGATTCTTGGTTTG+GGG | + | chr8_4:17902444-17902463 | Msa1316930:intron | 40.0% |
| TCCCCAAACCAAGAATCATT+CGG | - | chr8_4:17902448-17902467 | None:intergenic | 40.0% | |
| !! | TTACAAGTCATGGATTGGGA+AGG | + | chr8_4:17902607-17902626 | Msa1316930:CDS | 40.0% |
| GGATTGGGAAGGATAATTAC+TGG | + | chr8_4:17902618-17902637 | Msa1316930:CDS | 40.0% | |
| TGCTGCATGAAAAGCAATCA+TGG | - | chr8_4:17902654-17902673 | None:intergenic | 40.0% | |
| CCAAGAGAAAGTGGGATGAT+CGG | - | chr8_4:17899702-17899721 | None:intergenic | 45.0% | |
| GACTGAGATAGCGAAGTTTC+TGG | + | chr8_4:17900654-17900673 | Msa1316930:CDS | 45.0% | |
| ! | GAGATAGCGAAGTTTCTGGA+TGG | + | chr8_4:17900658-17900677 | Msa1316930:CDS | 45.0% |
| GAACATCGATGAACGCGTAT+AGG | - | chr8_4:17900849-17900868 | None:intergenic | 45.0% | |
| CTATCAGATTGGATGCGCAT+CGG | + | chr8_4:17901537-17901556 | Msa1316930:intron | 45.0% | |
| ATTCAGTCTCTCTGTCAGGA+GGG | - | chr8_4:17901589-17901608 | None:intergenic | 45.0% | |
| AATTCAGTCTCTCTGTCAGG+AGG | - | chr8_4:17901590-17901609 | None:intergenic | 45.0% | |
| ! | CAGAGAGACTGAATTTTCCG+GGG | + | chr8_4:17901595-17901614 | Msa1316930:CDS | 45.0% |
| ! | AGAGAGACTGAATTTTCCGG+GGG | + | chr8_4:17901596-17901615 | Msa1316930:CDS | 45.0% |
| AAACCTGGAATCTGGATTGC+TGG | + | chr8_4:17901687-17901706 | Msa1316930:CDS | 45.0% | |
| CAATGCAGACATTGGATGCA+AGG | + | chr8_4:17902016-17902035 | Msa1316930:CDS | 45.0% | |
| AAATGGGAACTGGGATTACG+AGG | + | chr8_4:17902071-17902090 | Msa1316930:CDS | 45.0% | |
| AACTGGGATTACGAGGTTGT+AGG | + | chr8_4:17902078-17902097 | Msa1316930:CDS | 45.0% | |
| GTCAACTTACCAACAGTCAG+TGG | + | chr8_4:17902203-17902222 | Msa1316930:intron | 45.0% | |
| ! | TTAACAAGGCCACTGACTGT+TGG | - | chr8_4:17902215-17902234 | None:intergenic | 45.0% |
| TGAAGCCTCCGAATGATTCT+TGG | + | chr8_4:17902437-17902456 | Msa1316930:intron | 45.0% | |
| CCAAACCAAGAATCATTCGG+AGG | - | chr8_4:17902445-17902464 | None:intergenic | 45.0% | |
| CCTCCGAATGATTCTTGGTT+TGG | + | chr8_4:17902442-17902461 | Msa1316930:intron | 45.0% | |
| AGGAGAGTTGCAAGAGCAGA+TGG | - | chr8_4:17899663-17899682 | None:intergenic | 50.0% | |
| CCGATCATCCCACTTTCTCT+TGG | + | chr8_4:17899699-17899718 | Msa1316930:CDS | 50.0% | |
| CATCATCCATGATAGCACGG+CGG | - | chr8_4:17900723-17900742 | None:intergenic | 50.0% | |
| GTGGAGGAGATGGAACTTGA+AGG | - | chr8_4:17900774-17900793 | None:intergenic | 50.0% | |
| TTGCTCCACTTGAATGCCAC+AGG | - | chr8_4:17900796-17900815 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCCTGCTGA+CGG | - | chr8_4:17900950-17900969 | None:intergenic | 50.0% | |
| TCCCAAATGCTTCAGTGCAC+CGG | - | chr8_4:17901127-17901146 | None:intergenic | 50.0% | |
| GAGGGCCACTGAAGAATCAA+AGG | - | chr8_4:17901571-17901590 | None:intergenic | 50.0% | |
| !! | GACTCACGGTTGTTGCTTTC+TGG | + | chr8_4:17901656-17901675 | Msa1316930:CDS | 50.0% |
| GTACCAGCAATCCAGATTCC+AGG | - | chr8_4:17901693-17901712 | None:intergenic | 50.0% | |
| TTACGTCGGATTCGCTTCGC+CGG | - | chr8_4:17899635-17899654 | None:intergenic | 55.0% | |
| GGATGATCGGAGAGAAAGCG+AGG | - | chr8_4:17899689-17899708 | None:intergenic | 55.0% | |
| TGATAGCACGGCGGAACCAT+CGG | - | chr8_4:17900714-17900733 | None:intergenic | 55.0% | |
| ATGGTTCCGCCGTGCTATCA+TGG | + | chr8_4:17900714-17900733 | Msa1316930:CDS | 55.0% | |
| AGTTCCATCTCCTCCACCTG+TGG | + | chr8_4:17900777-17900796 | Msa1316930:CDS | 55.0% | |
| AATGCCACAGGTGGAGGAGA+TGG | - | chr8_4:17900784-17900803 | None:intergenic | 55.0% | |
| CACTTGAATGCCACAGGTGG+AGG | - | chr8_4:17900790-17900809 | None:intergenic | 55.0% | |
| CTCCACCTGTGGCATTCAAG+TGG | + | chr8_4:17900788-17900807 | Msa1316930:CDS | 55.0% | |
| CTCCACTTGAATGCCACAGG+TGG | - | chr8_4:17900793-17900812 | None:intergenic | 55.0% | |
| CTCCTACAAGTTCCGTCAGC+AGG | + | chr8_4:17900935-17900954 | Msa1316930:CDS | 55.0% | |
| CTCCTGCTGACGGAACTTGT+AGG | - | chr8_4:17900940-17900959 | None:intergenic | 55.0% | |
| ! | CGTCAGCAGGAGAAGCACAT+TGG | + | chr8_4:17900948-17900967 | Msa1316930:CDS | 55.0% |
| ! | ACCCGGTGCACTGAAGCATT+TGG | + | chr8_4:17901122-17901141 | Msa1316930:intron | 55.0% |
| CCCAAATGCTTCAGTGCACC+GGG | - | chr8_4:17901126-17901145 | None:intergenic | 55.0% | |
| ! | CCCGGTGCACTGAAGCATTT+GGG | + | chr8_4:17901123-17901142 | Msa1316930:intron | 55.0% |
| AAACGAGCTTATGGGGCTGC+TGG | + | chr8_4:17902117-17902136 | Msa1316930:CDS | 55.0% | |
| CAGACGTAGAAGAACTCGCC+AGG | - | chr8_4:17902164-17902183 | None:intergenic | 55.0% | |
| CTGGCGAGTTCTTCTACGTC+TGG | + | chr8_4:17902162-17902181 | Msa1316930:CDS | 55.0% | |
| AACGCTACTTCCTCCGACGC+CGG | + | chr8_4:17899599-17899618 | Msa1316930:CDS | 60.0% | |
| TCGGAGAGAAAGCGAGGACG+AGG | - | chr8_4:17899683-17899702 | None:intergenic | 60.0% | |
| TGCTGGCAGCGACAAACCGA+TGG | + | chr8_4:17900695-17900714 | Msa1316930:CDS | 60.0% | |
| TCTGCAGCTTGTGCGATGCC+CGG | + | chr8_4:17901814-17901833 | Msa1316930:CDS | 60.0% | |
| CTTCGCCGGTGGCAGTTCTC+CGG | - | chr8_4:17899621-17899640 | None:intergenic | 65.0% | |
| ! | TGGCAGTTCTCCGGCGTCGG+AGG | - | chr8_4:17899612-17899631 | None:intergenic | 70.0% |
| CGGTGGCAGTTCTCCGGCGT+CGG | - | chr8_4:17899615-17899634 | None:intergenic | 70.0% | |
| CGACGCCGGAGAACTGCCAC+CGG | + | chr8_4:17899613-17899632 | Msa1316930:CDS | 70.0% | |
| CGTCGGATTCGCTTCGCCGG+TGG | - | chr8_4:17899632-17899651 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 17899581 | 17902709 | 17899581 | ID=Msa1316930;Name=Msa1316930 |
| chr8_4 | mRNA | 17899581 | 17902709 | 17899581 | ID=Msa1316930-mRNA-1;Parent=Msa1316930;Name=Msa1316930-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|7|0|293 |
| chr8_4 | exon | 17899581 | 17899720 | 17899581 | ID=Msa1316930-mRNA-1:exon:6600;Parent=Msa1316930-mRNA-1 |
| chr8_4 | exon | 17900636 | 17900835 | 17900636 | ID=Msa1316930-mRNA-1:exon:6601;Parent=Msa1316930-mRNA-1 |
| chr8_4 | exon | 17900925 | 17900969 | 17900925 | ID=Msa1316930-mRNA-1:exon:6602;Parent=Msa1316930-mRNA-1 |
| chr8_4 | exon | 17901544 | 17901708 | 17901544 | ID=Msa1316930-mRNA-1:exon:6603;Parent=Msa1316930-mRNA-1 |
| chr8_4 | exon | 17901813 | 17901860 | 17901813 | ID=Msa1316930-mRNA-1:exon:6604;Parent=Msa1316930-mRNA-1 |
| chr8_4 | exon | 17902013 | 17902183 | 17902013 | ID=Msa1316930-mRNA-1:exon:6605;Parent=Msa1316930-mRNA-1 |
| chr8_4 | exon | 17902597 | 17902709 | 17902597 | ID=Msa1316930-mRNA-1:exon:6606;Parent=Msa1316930-mRNA-1 |
| chr8_4 | CDS | 17899581 | 17899720 | 17899581 | ID=Msa1316930-mRNA-1:cds;Parent=Msa1316930-mRNA-1 |
| chr8_4 | CDS | 17900636 | 17900835 | 17900636 | ID=Msa1316930-mRNA-1:cds;Parent=Msa1316930-mRNA-1 |
| chr8_4 | CDS | 17900925 | 17900969 | 17900925 | ID=Msa1316930-mRNA-1:cds;Parent=Msa1316930-mRNA-1 |
| chr8_4 | CDS | 17901544 | 17901708 | 17901544 | ID=Msa1316930-mRNA-1:cds;Parent=Msa1316930-mRNA-1 |
| chr8_4 | CDS | 17901813 | 17901860 | 17901813 | ID=Msa1316930-mRNA-1:cds;Parent=Msa1316930-mRNA-1 |
| chr8_4 | CDS | 17902013 | 17902183 | 17902013 | ID=Msa1316930-mRNA-1:cds;Parent=Msa1316930-mRNA-1 |
| chr8_4 | CDS | 17902597 | 17902709 | 17902597 | ID=Msa1316930-mRNA-1:cds;Parent=Msa1316930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
