Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252230 | XP_013446179.1 | 69.369 | 222 | 31 | 3 | 66 | 250 | 139 | 360 | 1.15e-94 | 292 |
| Msa1252230 | XP_013446179.1 | 89.394 | 66 | 7 | 0 | 1 | 66 | 1 | 66 | 3.97e-28 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252230 | A0A072TSM2 | 69.369 | 222 | 31 | 3 | 66 | 250 | 139 | 360 | 5.50e-95 | 292 |
| Msa1252230 | A0A072TSM2 | 89.394 | 66 | 7 | 0 | 1 | 66 | 1 | 66 | 1.90e-28 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017160 | Msa1252230 | 0.805857 | 1.090021e-49 | -8.615850e-47 |
| Msa0789270 | Msa1252230 | 0.816042 | 6.781028e-52 | -8.615850e-47 |
| Msa0789280 | Msa1252230 | 0.812722 | 3.674931e-51 | -8.615850e-47 |
| Msa0789290 | Msa1252230 | 0.818094 | 2.345634e-52 | -8.615850e-47 |
| Msa0789300 | Msa1252230 | 0.814096 | 1.833422e-51 | -8.615850e-47 |
| Msa0796590 | Msa1252230 | 0.807122 | 5.898649e-50 | -8.615850e-47 |
| Msa1252230 | Msa1262130 | 0.806750 | 7.068998e-50 | -8.615850e-47 |
| Msa1089530 | Msa1252230 | 0.804409 | 2.190237e-49 | -8.615850e-47 |
| Msa0269360 | Msa1252230 | 0.800731 | 1.255704e-48 | -8.615850e-47 |
| Msa0908170 | Msa1252230 | 0.800437 | 1.442197e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252230 | MtrunA17_Chr8g0368481 | 69.369 | 222 | 31 | 3 | 66 | 250 | 139 | 360 | 1.06e-98 | 292 |
| Msa1252230 | MtrunA17_Chr8g0368481 | 89.394 | 66 | 7 | 0 | 1 | 66 | 1 | 66 | 3.65e-32 | 120 |
| Msa1252230 | MtrunA17_Chr8g0368491 | 60.177 | 226 | 53 | 3 | 62 | 250 | 120 | 345 | 1.09e-80 | 246 |
| Msa1252230 | MtrunA17_Chr8g0368491 | 94.118 | 34 | 2 | 0 | 33 | 66 | 18 | 51 | 3.14e-13 | 68.2 |
| Msa1252230 | MtrunA17_Chr5g0413351 | 40.175 | 229 | 92 | 5 | 62 | 250 | 105 | 328 | 6.30e-42 | 145 |
| Msa1252230 | MtrunA17_Chr3g0117481 | 32.479 | 234 | 101 | 6 | 66 | 250 | 127 | 352 | 2.33e-27 | 107 |
| Msa1252230 | MtrunA17_Chr4g0058951 | 33.913 | 230 | 97 | 6 | 62 | 245 | 125 | 345 | 5.40e-27 | 106 |
| Msa1252230 | MtrunA17_Chr7g0228251 | 33.906 | 233 | 106 | 8 | 53 | 247 | 95 | 317 | 2.92e-26 | 104 |
| Msa1252230 | MtrunA17_Chr1g0194161 | 31.081 | 222 | 108 | 7 | 62 | 245 | 110 | 324 | 6.48e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1252230 | AT1G70505.3 | 36.279 | 215 | 96 | 6 | 66 | 242 | 111 | 322 | 3.69e-28 | 109 |
| Msa1252230 | AT1G70505.4 | 36.279 | 215 | 96 | 6 | 66 | 242 | 137 | 348 | 5.00e-28 | 110 |
| Msa1252230 | AT1G10660.2 | 35.160 | 219 | 99 | 8 | 62 | 240 | 101 | 316 | 2.08e-25 | 102 |
| Msa1252230 | AT1G10660.1 | 35.160 | 219 | 99 | 8 | 62 | 240 | 101 | 316 | 2.08e-25 | 102 |
| Msa1252230 | AT1G10660.3 | 35.160 | 219 | 99 | 8 | 62 | 240 | 101 | 316 | 2.08e-25 | 102 |
| Msa1252230 | AT1G10660.4 | 35.160 | 219 | 99 | 8 | 62 | 240 | 101 | 316 | 2.08e-25 | 102 |
| Msa1252230 | AT5G62960.1 | 31.801 | 261 | 100 | 9 | 25 | 245 | 120 | 342 | 7.62e-24 | 98.6 |
| Msa1252230 | AT3G27770.2 | 32.857 | 210 | 95 | 7 | 66 | 235 | 65 | 268 | 1.57e-20 | 88.2 |
| Msa1252230 | AT3G27770.1 | 32.381 | 210 | 96 | 6 | 66 | 235 | 108 | 311 | 1.76e-20 | 89.0 |
| Msa1252230 | AT1G70505.2 | 44.444 | 117 | 59 | 4 | 66 | 180 | 111 | 223 | 1.22e-18 | 82.8 |
| Msa1252230 | AT1G70505.1 | 43.103 | 116 | 62 | 3 | 66 | 180 | 137 | 249 | 2.40e-18 | 83.6 |
| Msa1252230 | AT5G62960.2 | 30.392 | 204 | 82 | 7 | 25 | 224 | 120 | 267 | 7.46e-16 | 75.9 |
Find 54 sgRNAs with CRISPR-Local
Find 409 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAGTGATTGATAATTT+TGG | 0.148244 | 8_2:-49070719 | None:intergenic |
| TTATTTAAACACAATGAATT+TGG | 0.165158 | 8_2:+49066139 | Msa1252230:CDS |
| TTCTCACTGACTTTGTATTT+TGG | 0.173742 | 8_2:+49068761 | Msa1252230:CDS |
| ATACAACTGCATTAAGTTAT+TGG | 0.204889 | 8_2:+49065145 | Msa1252230:CDS |
| CTTTGGTCACTATTTACTTT+GGG | 0.231865 | 8_2:+49065788 | Msa1252230:CDS |
| ACTGAATTAGAGATTCTTCT+TGG | 0.267469 | 8_2:+49065075 | Msa1252230:CDS |
| GGATCATCTTTATCAATATA+TGG | 0.278675 | 8_2:+49066112 | Msa1252230:CDS |
| AAATTACCTGATAAATTATC+TGG | 0.284897 | 8_2:-49066312 | None:intergenic |
| TATTTAAACACAATGAATTT+GGG | 0.288226 | 8_2:+49066140 | Msa1252230:CDS |
| CATTAAGTTATTGGTTGAAT+TGG | 0.300686 | 8_2:+49065154 | Msa1252230:CDS |
| CTGGTATGAAATTCCTGATT+AGG | 0.311718 | 8_2:-49066259 | None:intergenic |
| TGGTTATCTAGATCATTTCC+TGG | 0.348579 | 8_2:+49070665 | Msa1252230:CDS |
| AGATGCAGAAAGCACTTATA+TGG | 0.362866 | 8_2:+49066189 | Msa1252230:CDS |
| TTTGGGGCAAGAACAGTAAA+TGG | 0.368832 | 8_2:+49066157 | Msa1252230:CDS |
| ACTTTGGTCACTATTTACTT+TGG | 0.380949 | 8_2:+49065787 | Msa1252230:CDS |
| TGAATGCTCTCACTGGATAA+AGG | 0.382156 | 8_2:-49068789 | None:intergenic |
| CATCTCCATATGCTCCCTTA+TGG | 0.383079 | 8_2:+49069719 | Msa1252230:CDS |
| ACTTCCTAAGTGTCCTAATC+AGG | 0.415815 | 8_2:+49066246 | Msa1252230:CDS |
| ACATACCATAAGGGAGCATA+TGG | 0.428499 | 8_2:-49069724 | None:intergenic |
| TCTCTAATTCAGTGAGGAAA+AGG | 0.449968 | 8_2:-49065065 | None:intergenic |
| TCAGTGAGGAAAAGGAGCTT+TGG | 0.455079 | 8_2:-49065057 | None:intergenic |
| TATATGGCTCCATCTCTTGA+AGG | 0.463376 | 8_2:+49066205 | Msa1252230:CDS |
| GAAATTGAGAACATACCATA+AGG | 0.470839 | 8_2:-49069734 | None:intergenic |
| TTTCATACCAGGGAAATTGC+TGG | 0.477383 | 8_2:+49066271 | Msa1252230:CDS |
| TCGTTATTGAATGCTCTCAC+TGG | 0.484401 | 8_2:-49068796 | None:intergenic |
| GGTTATCTAGATCATTTCCT+GGG | 0.504323 | 8_2:+49070666 | Msa1252230:CDS |
| AATTCCTGATTAGGACACTT+AGG | 0.504450 | 8_2:-49066250 | None:intergenic |
| GAACAGATTGACCTTCACTT+TGG | 0.506577 | 8_2:+49065771 | Msa1252230:intron |
| CTTAATGCAGTTGTATCTGT+TGG | 0.510133 | 8_2:-49065138 | None:intergenic |
| TCTAAAACCCCTTCAAGAGA+TGG | 0.516647 | 8_2:-49066214 | None:intergenic |
| CAGGGAAATTGCTGGTGTGT+GGG | 0.517999 | 8_2:+49066279 | Msa1252230:CDS |
| ATATGGCTCCATCTCTTGAA+GGG | 0.519835 | 8_2:+49066206 | Msa1252230:CDS |
| AATGTGATATCACTTATCAA+TGG | 0.522615 | 8_2:+49065114 | Msa1252230:CDS |
| GAGATGACAGATCAAGGAAA+GGG | 0.526063 | 8_2:-49069702 | None:intergenic |
| AATTATCAATCACTGAATGA+AGG | 0.531601 | 8_2:+49070723 | Msa1252230:three_prime_UTR |
| CATATGGAGATGACAGATCA+AGG | 0.533878 | 8_2:-49069708 | None:intergenic |
| CTAATCAGGAATTTCATACC+AGG | 0.541236 | 8_2:+49066260 | Msa1252230:CDS |
| CCAGGGAAATTGCTGGTGTG+TGG | 0.542037 | 8_2:+49066278 | Msa1252230:CDS |
| TATGGCTCCATCTCTTGAAG+GGG | 0.550443 | 8_2:+49066207 | Msa1252230:CDS |
| TTAGGACACTTAGGAAGTAC+AGG | 0.551746 | 8_2:-49066241 | None:intergenic |
| TTTGGTCACTATTTACTTTG+GGG | 0.562730 | 8_2:+49065789 | Msa1252230:CDS |
| GACAGATCAAGGAAAGGGTA+AGG | 0.569217 | 8_2:-49069697 | None:intergenic |
| ATTTAAACACAATGAATTTG+GGG | 0.571203 | 8_2:+49066141 | Msa1252230:CDS |
| AAAATAAATAAGCCGTAACA+TGG | 0.575164 | 8_2:-49070620 | None:intergenic |
| AGGGAAATTGCTGGTGTGTG+GGG | 0.594975 | 8_2:+49066280 | Msa1252230:CDS |
| AAATTGAGAACATACCATAA+GGG | 0.597196 | 8_2:-49069733 | None:intergenic |
| CCACACACCAGCAATTTCCC+TGG | 0.600599 | 8_2:-49066278 | None:intergenic |
| AGGATGTGTATTAAGAGATG+TGG | 0.604696 | 8_2:-49070829 | None:intergenic |
| AGGACAATATATTTGAGCAA+TGG | 0.606011 | 8_2:-49069766 | None:intergenic |
| GGAGATGACAGATCAAGGAA+AGG | 0.609992 | 8_2:-49069703 | None:intergenic |
| GTAAATAGTGACCAAAGTGA+AGG | 0.623574 | 8_2:-49065782 | None:intergenic |
| TGTACAATTCTTGATGACCC+AGG | 0.653280 | 8_2:-49070683 | None:intergenic |
| TAATCAGGAATTTCATACCA+GGG | 0.661225 | 8_2:+49066261 | Msa1252230:CDS |
| GAAGAATCTCTAATTCAGTG+AGG | 0.707680 | 8_2:-49065071 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATATAATTAAAAGAAAA+AGG | - | chr8_2:49069621-49069640 | None:intergenic | 10.0% |
| !!! | AAATTGATTTATAGTTATAA+TGG | - | chr8_2:49070171-49070190 | None:intergenic | 10.0% |
| !! | TATTTAATATTCAAGTATGA+AGG | + | chr8_2:49065228-49065247 | Msa1252230:intron | 15.0% |
| !! | TACTAGAAAAACTAAAATTA+TGG | - | chr8_2:49066016-49066035 | None:intergenic | 15.0% |
| !! | TTATTTAAACACAATGAATT+TGG | + | chr8_2:49066139-49066158 | Msa1252230:CDS | 15.0% |
| !! | TATTTAAACACAATGAATTT+GGG | + | chr8_2:49066140-49066159 | Msa1252230:CDS | 15.0% |
| !!! | ATAGATATTGTCATATATTT+TGG | + | chr8_2:49068618-49068637 | Msa1252230:intron | 15.0% |
| !!! | TCTTTTAATTATATACATGA+AGG | + | chr8_2:49069624-49069643 | Msa1252230:intron | 15.0% |
| !!! | CATTTCTTTTGTTATTCTTT+TGG | + | chr8_2:49065380-49065399 | Msa1252230:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | + | chr8_2:49065565-49065584 | Msa1252230:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | + | chr8_2:49065566-49065585 | Msa1252230:intron | 20.0% |
| !!! | AATAGCTTATTATGTTCTTT+TGG | + | chr8_2:49065691-49065710 | Msa1252230:intron | 20.0% |
| !! | ACAATACAATCAGTAATTAT+AGG | - | chr8_2:49065734-49065753 | None:intergenic | 20.0% |
| !! | ATAAAATAGTTAAGTTAGTG+AGG | + | chr8_2:49065889-49065908 | Msa1252230:intron | 20.0% |
| !! | TAAAATAGTTAAGTTAGTGA+GGG | + | chr8_2:49065890-49065909 | Msa1252230:intron | 20.0% |
| !! | AAATTATGGACGAAAATTAT+TGG | - | chr8_2:49066002-49066021 | None:intergenic | 20.0% |
| !! | ATTTAAACACAATGAATTTG+GGG | + | chr8_2:49066141-49066160 | Msa1252230:CDS | 20.0% |
| !! | AAATTACCTGATAAATTATC+TGG | - | chr8_2:49066315-49066334 | None:intergenic | 20.0% |
| !! | TCTGATTCAAATAATTTATG+AGG | + | chr8_2:49066340-49066359 | Msa1252230:intron | 20.0% |
| !!! | AATATGATTTGTGAAATGAT+GGG | - | chr8_2:49068187-49068206 | None:intergenic | 20.0% |
| !!! | AAATATGATTTGTGAAATGA+TGG | - | chr8_2:49068188-49068207 | None:intergenic | 20.0% |
| !!! | TTCACAAATCATATTTCTTT+TGG | + | chr8_2:49068192-49068211 | Msa1252230:intron | 20.0% |
| !! | TCTTATCAAATAATGTTCAA+TGG | - | chr8_2:49068525-49068544 | None:intergenic | 20.0% |
| !! | ATGACAATATCTATTAAAAG+TGG | - | chr8_2:49068612-49068631 | None:intergenic | 20.0% |
| !!! | AATTATTTCTCATCAAATTC+AGG | + | chr8_2:49068676-49068695 | Msa1252230:intron | 20.0% |
| !! | TGAAACTCATATTTGATATT+CGG | + | chr8_2:49068880-49068899 | Msa1252230:intron | 20.0% |
| !!! | TATCTTTATTCTTTAGAATC+GGG | - | chr8_2:49068927-49068946 | None:intergenic | 20.0% |
| !!! | GTATCTTTATTCTTTAGAAT+CGG | - | chr8_2:49068928-49068947 | None:intergenic | 20.0% |
| !!! | TTAAAATTTGAAACTGTTTC+AGG | - | chr8_2:49069121-49069140 | None:intergenic | 20.0% |
| !!! | TGAAACAGTTTCAAATTTTA+AGG | + | chr8_2:49069120-49069139 | Msa1252230:intron | 20.0% |
| !!! | TGTTACTTGAAATTAAGTTA+AGG | - | chr8_2:49069434-49069453 | None:intergenic | 20.0% |
| !! | TTATGCTATGAGTAATAATA+GGG | - | chr8_2:49069967-49069986 | None:intergenic | 20.0% |
| !! | TTAGGAAAAGTAGTTTATAT+TGG | - | chr8_2:49069994-49070013 | None:intergenic | 20.0% |
| !!! | ACTACTTTTCCTAATATTAA+TGG | + | chr8_2:49070000-49070019 | Msa1252230:intron | 20.0% |
| !!! | CATGTTGTTATTTTAGATTA+AGG | + | chr8_2:49070228-49070247 | Msa1252230:intron | 20.0% |
| !!! | AATTTCTCCGATTTTTTATA+CGG | + | chr8_2:49070291-49070310 | Msa1252230:intron | 20.0% |
| !! | TTATAGACCGTATAAAAAAT+CGG | - | chr8_2:49070301-49070320 | None:intergenic | 20.0% |
| !!! | ATCTTCAAAATGATTTTGTT+AGG | - | chr8_2:49070764-49070783 | None:intergenic | 20.0% |
| !! | AGTGATATCACATTTTTCTT+TGG | - | chr8_2:49065108-49065127 | None:intergenic | 25.0% |
| ! | AATGTGATATCACTTATCAA+TGG | + | chr8_2:49065114-49065133 | Msa1252230:CDS | 25.0% |
| ! | ATACAACTGCATTAAGTTAT+TGG | + | chr8_2:49065145-49065164 | Msa1252230:CDS | 25.0% |
| !! | CATTAAGTTATTGGTTGAAT+TGG | + | chr8_2:49065154-49065173 | Msa1252230:CDS | 25.0% |
| ! | TTAAAGGAATTGATCCTTAT+TGG | + | chr8_2:49065340-49065359 | Msa1252230:intron | 25.0% |
| ! | ATTAACTTACTGAGTGTAAT+AGG | - | chr8_2:49065451-49065470 | None:intergenic | 25.0% |
| !! | AAAGCTATTCTGAAAAATCT+AGG | - | chr8_2:49065607-49065626 | None:intergenic | 25.0% |
| ! | AATTTAGTGAGAATTAGAGA+CGG | - | chr8_2:49065941-49065960 | None:intergenic | 25.0% |
| !! | AATTCTCACTAAATTTTGTG+AGG | + | chr8_2:49065946-49065965 | Msa1252230:intron | 25.0% |
| ! | GGATCATCTTTATCAATATA+TGG | + | chr8_2:49066112-49066131 | Msa1252230:CDS | 25.0% |
| !! | CATTTTCCAGATAATTTATC+AGG | + | chr8_2:49066306-49066325 | Msa1252230:CDS | 25.0% |
| ! | TTGAAATGTGACGTATATTT+AGG | + | chr8_2:49066416-49066435 | Msa1252230:intron | 25.0% |
| ! | TGAAATGTGACGTATATTTA+GGG | + | chr8_2:49066417-49066436 | Msa1252230:intron | 25.0% |
| ! | AGTAATATGTTTGATGTAGT+TGG | + | chr8_2:49066480-49066499 | Msa1252230:intron | 25.0% |
| !!! | AGCTGATTTTATTGAATCAA+GGG | + | chr8_2:49066549-49066568 | Msa1252230:intron | 25.0% |
| ! | TTGTGATTACAGAAACATAT+AGG | + | chr8_2:49066609-49066628 | Msa1252230:intron | 25.0% |
| ! | AAACATATAGGAACGATAAA+AGG | + | chr8_2:49066621-49066640 | Msa1252230:intron | 25.0% |
| ! | AACATATAGGAACGATAAAA+GGG | + | chr8_2:49066622-49066641 | Msa1252230:intron | 25.0% |
| !!! | CAATGGTGTTTTAAAAAATG+AGG | - | chr8_2:49066979-49066998 | None:intergenic | 25.0% |
| !!! | ACGAAAAATTTTAGCAAGAA+GGG | - | chr8_2:49067212-49067231 | None:intergenic | 25.0% |
| !!! | TACGAAAAATTTTAGCAAGA+AGG | - | chr8_2:49067213-49067232 | None:intergenic | 25.0% |
| !! | TTGCTAAAATTTTTCGTAGT+AGG | + | chr8_2:49067215-49067234 | Msa1252230:intron | 25.0% |
| !! | TGCTAAAATTTTTCGTAGTA+GGG | + | chr8_2:49067216-49067235 | Msa1252230:intron | 25.0% |
| ! | TTGAAGTAAATAAAAAACCC+TGG | - | chr8_2:49067466-49067485 | None:intergenic | 25.0% |
| !! | AGATCAAAGAAATCCATTTT+TGG | - | chr8_2:49068112-49068131 | None:intergenic | 25.0% |
| ! | AGCCATAAGATAAAAAGATA+CGG | + | chr8_2:49068441-49068460 | Msa1252230:intron | 25.0% |
| ! | TGTCATATGATACTAGTATA+AGG | + | chr8_2:49069184-49069203 | Msa1252230:intron | 25.0% |
| ! | TGATACATCATTGAATTGTA+TGG | + | chr8_2:49069325-49069344 | Msa1252230:intron | 25.0% |
| !! | AATTTCAAGTAACAGTTTCA+AGG | + | chr8_2:49069440-49069459 | Msa1252230:intron | 25.0% |
| ! | AAATTGAGAACATACCATAA+GGG | - | chr8_2:49069736-49069755 | None:intergenic | 25.0% |
| !!! | TGCAATTTATTTTACGTATC+AGG | - | chr8_2:49069832-49069851 | None:intergenic | 25.0% |
| !! | AGTGAGTAAAATTTAGAGTT+TGG | - | chr8_2:49069870-49069889 | None:intergenic | 25.0% |
| ! | GTTATGCTATGAGTAATAAT+AGG | - | chr8_2:49069968-49069987 | None:intergenic | 25.0% |
| ! | AGGTACTATCCATTAATATT+AGG | - | chr8_2:49070012-49070031 | None:intergenic | 25.0% |
| ! | TGAATATACAAAATGTCAAG+AGG | - | chr8_2:49070571-49070590 | None:intergenic | 25.0% |
| !! | TCTTGACATTTTGTATATTC+AGG | + | chr8_2:49070570-49070589 | Msa1252230:intron | 25.0% |
| !! | ATTTTGTATATTCAGGTACT+TGG | + | chr8_2:49070577-49070596 | Msa1252230:intron | 25.0% |
| !! | TTTTGTATATTCAGGTACTT+GGG | + | chr8_2:49070578-49070597 | Msa1252230:intron | 25.0% |
| ! | AAAATAAATAAGCCGTAACA+TGG | - | chr8_2:49070623-49070642 | None:intergenic | 25.0% |
| !!! | CATTCAGTGATTGATAATTT+TGG | - | chr8_2:49070722-49070741 | None:intergenic | 25.0% |
| ! | AATTATCAATCACTGAATGA+AGG | + | chr8_2:49070723-49070742 | Msa1252230:three_prime_UTR | 25.0% |
| !! | ATTTTGTTAGGCTATCTAAA+TGG | - | chr8_2:49070752-49070771 | None:intergenic | 25.0% |
| ACTGAATTAGAGATTCTTCT+TGG | + | chr8_2:49065075-49065094 | Msa1252230:CDS | 30.0% | |
| TGTTATATGAAGATGAAGCT+TGG | + | chr8_2:49065307-49065326 | Msa1252230:intron | 30.0% | |
| CTATAAACAAGAAGCCAATA+AGG | - | chr8_2:49065357-49065376 | None:intergenic | 30.0% | |
| ATTGCCAATGTTATTGTTTC+AGG | + | chr8_2:49065411-49065430 | Msa1252230:intron | 30.0% | |
| ! | AATCTAGGACTAAAAGTTGA+AGG | - | chr8_2:49065592-49065611 | None:intergenic | 30.0% |
| ! | TTTTCTCTTCACTATACTCA+TGG | + | chr8_2:49065624-49065643 | Msa1252230:intron | 30.0% |
| ACTTTGGTCACTATTTACTT+TGG | + | chr8_2:49065787-49065806 | Msa1252230:CDS | 30.0% | |
| CTTTGGTCACTATTTACTTT+GGG | + | chr8_2:49065788-49065807 | Msa1252230:CDS | 30.0% | |
| TTTGGTCACTATTTACTTTG+GGG | + | chr8_2:49065789-49065808 | Msa1252230:CDS | 30.0% | |
| TTAGTGAGGGAATTTAGAAA+TGG | + | chr8_2:49065903-49065922 | Msa1252230:intron | 30.0% | |
| CAAGCTGAAAGTAAAATTGA+GGG | - | chr8_2:49066093-49066112 | None:intergenic | 30.0% | |
| TAATCAGGAATTTCATACCA+GGG | + | chr8_2:49066261-49066280 | Msa1252230:CDS | 30.0% | |
| !! | ACAAATTTTGTTTCCAAAGG+AGG | + | chr8_2:49066440-49066459 | Msa1252230:intron | 30.0% |
| AACTAAATATAAGCCTCCTT+TGG | - | chr8_2:49066456-49066475 | None:intergenic | 30.0% | |
| AAGGAGGCTTATATTTAGTT+AGG | + | chr8_2:49066456-49066475 | Msa1252230:intron | 30.0% | |
| !! | CAGCTGATTTTATTGAATCA+AGG | + | chr8_2:49066548-49066567 | Msa1252230:intron | 30.0% |
| ACATATAGGAACGATAAAAG+GGG | + | chr8_2:49066623-49066642 | Msa1252230:intron | 30.0% | |
| AATTTAGCTGTTAAGCTAGA+AGG | - | chr8_2:49066677-49066696 | None:intergenic | 30.0% | |
| AGTAATTTAGGCAATGTTTC+TGG | - | chr8_2:49066738-49066757 | None:intergenic | 30.0% | |
| CATGCTCTAATGAGTAATTT+AGG | - | chr8_2:49066750-49066769 | None:intergenic | 30.0% | |
| ! | TAAAATTTTTCGTAGTAGGG+AGG | + | chr8_2:49067219-49067238 | Msa1252230:intron | 30.0% |
| ATAAAGTGAGGAACTTTGTT+TGG | - | chr8_2:49067262-49067281 | None:intergenic | 30.0% | |
| ! | TTCCTCACTTTATTTGACAA+AGG | + | chr8_2:49067269-49067288 | Msa1252230:intron | 30.0% |
| TTCCTTTGTCAAATAAAGTG+AGG | - | chr8_2:49067274-49067293 | None:intergenic | 30.0% | |
| TCAAGATTTGGAAAGATAAG+GGG | - | chr8_2:49067622-49067641 | None:intergenic | 30.0% | |
| GTCAAGATTTGGAAAGATAA+GGG | - | chr8_2:49067623-49067642 | None:intergenic | 30.0% | |
| AGTCAAGATTTGGAAAGATA+AGG | - | chr8_2:49067624-49067643 | None:intergenic | 30.0% | |
| ACTATAATCTGAGTTATCTG+TGG | - | chr8_2:49067715-49067734 | None:intergenic | 30.0% | |
| AGATAACTCAGATTATAGTC+AGG | + | chr8_2:49067716-49067735 | Msa1252230:intron | 30.0% | |
| ACTTGATAGATATTACCCAA+GGG | - | chr8_2:49067762-49067781 | None:intergenic | 30.0% | |
| TACTTGATAGATATTACCCA+AGG | - | chr8_2:49067763-49067782 | None:intergenic | 30.0% | |
| TATGTTAGCCAAATTCTTGT+GGG | - | chr8_2:49067925-49067944 | None:intergenic | 30.0% | |
| GTCAATGACAAAACCAAAAA+TGG | + | chr8_2:49068096-49068115 | Msa1252230:intron | 30.0% | |
| !!! | TTTTGGCACATTTTGACTAA+AGG | + | chr8_2:49068209-49068228 | Msa1252230:intron | 30.0% |
| ATCTAGATTGACCATTTGTT+CGG | + | chr8_2:49068245-49068264 | Msa1252230:intron | 30.0% | |
| ! | CACCGTATCTTTTTATCTTA+TGG | - | chr8_2:49068446-49068465 | None:intergenic | 30.0% |
| ! | TTTTCTTTATAGACTTGTGC+AGG | + | chr8_2:49068730-49068749 | Msa1252230:intron | 30.0% |
| !!! | TTCTCACTGACTTTGTATTT+TGG | + | chr8_2:49068761-49068780 | Msa1252230:CDS | 30.0% |
| TACATTGTAAACTCTAAGCT+TGG | - | chr8_2:49069050-49069069 | None:intergenic | 30.0% | |
| AATTCAATGATGTATCACCA+AGG | - | chr8_2:49069322-49069341 | None:intergenic | 30.0% | |
| ATAAGACAAAATTACACACG+TGG | + | chr8_2:49069406-49069425 | Msa1252230:intron | 30.0% | |
| AAATATGCAAATCGAAACAC+TGG | - | chr8_2:49069521-49069540 | None:intergenic | 30.0% | |
| ! | GATTTGCATATTTTCTCTTG+TGG | + | chr8_2:49069528-49069547 | Msa1252230:intron | 30.0% |
| GAAATTGAGAACATACCATA+AGG | - | chr8_2:49069737-49069756 | None:intergenic | 30.0% | |
| AGGACAATATATTTGAGCAA+TGG | - | chr8_2:49069769-49069788 | None:intergenic | 30.0% | |
| TATTGTCCTCTCATTAAACA+TGG | + | chr8_2:49069780-49069799 | Msa1252230:intron | 30.0% | |
| ATCAATCCATGTTTAATGAG+AGG | - | chr8_2:49069789-49069808 | None:intergenic | 30.0% | |
| ! | TCATTAAACATGGATTGATG+AGG | + | chr8_2:49069790-49069809 | Msa1252230:intron | 30.0% |
| ! | AACTCTTTAGAGACTTTGAA+AGG | - | chr8_2:49069915-49069934 | None:intergenic | 30.0% |
| !! | ACATTGACTTGATGATTGAA+TGG | + | chr8_2:49070259-49070278 | Msa1252230:intron | 30.0% |
| TATACGGTCTATAAAAGAAG+TGG | + | chr8_2:49070307-49070326 | Msa1252230:intron | 30.0% | |
| AGTGTTCAACCTAACAATAT+TGG | + | chr8_2:49070396-49070415 | Msa1252230:intron | 30.0% | |
| CCTAACAATATTGGTATTGT+CGG | + | chr8_2:49070405-49070424 | Msa1252230:intron | 30.0% | |
| !! | TAGTGAAGTTGAAGCATTTT+TGG | + | chr8_2:49070645-49070664 | Msa1252230:CDS | 30.0% |
| TCTCTAATTCAGTGAGGAAA+AGG | - | chr8_2:49065068-49065087 | None:intergenic | 35.0% | |
| GAAGAATCTCTAATTCAGTG+AGG | - | chr8_2:49065074-49065093 | None:intergenic | 35.0% | |
| CTTAATGCAGTTGTATCTGT+TGG | - | chr8_2:49065141-49065160 | None:intergenic | 35.0% | |
| ! | GATTCTTCTTTTGTGCACTA+TGG | + | chr8_2:49065178-49065197 | Msa1252230:CDS | 35.0% |
| GCTTGGAATACTTGTGTTAA+AGG | + | chr8_2:49065324-49065343 | Msa1252230:intron | 35.0% | |
| AGCTCCTGAAACAATAACAT+TGG | - | chr8_2:49065418-49065437 | None:intergenic | 35.0% | |
| TAAAAGTTGAAGGCCCTATT+TGG | - | chr8_2:49065582-49065601 | None:intergenic | 35.0% | |
| CAGGACATTTATGTCAACAA+AGG | + | chr8_2:49065647-49065666 | Msa1252230:intron | 35.0% | |
| GTAAATAGTGACCAAAGTGA+AGG | - | chr8_2:49065785-49065804 | None:intergenic | 35.0% | |
| !! | TCACTATTTACTTTGGGGTA+AGG | + | chr8_2:49065794-49065813 | Msa1252230:intron | 35.0% |
| ! | TCTCACTAAATTTTGTGAGG+AGG | + | chr8_2:49065949-49065968 | Msa1252230:intron | 35.0% |
| TTGTGAGGAGGAAATTAGAA+AGG | + | chr8_2:49065961-49065980 | Msa1252230:intron | 35.0% | |
| TGTGAGGAGGAAATTAGAAA+GGG | + | chr8_2:49065962-49065981 | Msa1252230:intron | 35.0% | |
| CCAAGCTGAAAGTAAAATTG+AGG | - | chr8_2:49066094-49066113 | None:intergenic | 35.0% | |
| ! | CCTCAATTTTACTTTCAGCT+TGG | + | chr8_2:49066091-49066110 | Msa1252230:intron | 35.0% |
| !! | AGATGCAGAAAGCACTTATA+TGG | + | chr8_2:49066189-49066208 | Msa1252230:CDS | 35.0% |
| AATTCCTGATTAGGACACTT+AGG | - | chr8_2:49066253-49066272 | None:intergenic | 35.0% | |
| CTGGTATGAAATTCCTGATT+AGG | - | chr8_2:49066262-49066281 | None:intergenic | 35.0% | |
| CTAATCAGGAATTTCATACC+AGG | + | chr8_2:49066260-49066279 | Msa1252230:CDS | 35.0% | |
| !! | GGGACAAATTTTGTTTCCAA+AGG | + | chr8_2:49066437-49066456 | Msa1252230:intron | 35.0% |
| TATTGAATCAAGGGAAGAGA+AGG | + | chr8_2:49066558-49066577 | Msa1252230:intron | 35.0% | |
| ! | TTTGGTGATAGATGTTGACA+GGG | - | chr8_2:49066654-49066673 | None:intergenic | 35.0% |
| TTCTGGTGAAATATAGCAGT+AGG | - | chr8_2:49066721-49066740 | None:intergenic | 35.0% | |
| AGCAGAAATTTCTATAGCAG+TGG | + | chr8_2:49066944-49066963 | Msa1252230:intron | 35.0% | |
| GCAGAAATTTCTATAGCAGT+GGG | + | chr8_2:49066945-49066964 | Msa1252230:intron | 35.0% | |
| ! | AATTTCTATAGCAGTGGGTT+TGG | + | chr8_2:49066950-49066969 | Msa1252230:intron | 35.0% |
| TGAACGATTGGATATTGAAC+TGG | - | chr8_2:49067074-49067093 | None:intergenic | 35.0% | |
| !!! | GTTTTGTTTGCCTCTCAAAT+TGG | - | chr8_2:49067123-49067142 | None:intergenic | 35.0% |
| ATTTGAGAGGCAAACAAAAC+TGG | + | chr8_2:49067123-49067142 | Msa1252230:intron | 35.0% | |
| GCAAACAAAACTGGAAAAGA+TGG | + | chr8_2:49067132-49067151 | Msa1252230:intron | 35.0% | |
| ! | TCTGGGATTGTGAAAAAGAT+GGG | - | chr8_2:49067405-49067424 | None:intergenic | 35.0% |
| CCTTGAAGACAAATTTGTCT+GGG | - | chr8_2:49067422-49067441 | None:intergenic | 35.0% | |
| CCAGACAAATTTGTCTTCAA+GGG | + | chr8_2:49067420-49067439 | Msa1252230:intron | 35.0% | |
| CAGACAAATTTGTCTTCAAG+GGG | + | chr8_2:49067421-49067440 | Msa1252230:intron | 35.0% | |
| TTACTTCAAAAGAGCTGAAG+TGG | + | chr8_2:49067477-49067496 | Msa1252230:intron | 35.0% | |
| CAAGATTTGGAAAGATAAGG+GGG | - | chr8_2:49067621-49067640 | None:intergenic | 35.0% | |
| GCTAAGGATATTATTGAGCA+GGG | - | chr8_2:49067677-49067696 | None:intergenic | 35.0% | |
| TGCTAAGGATATTATTGAGC+AGG | - | chr8_2:49067678-49067697 | None:intergenic | 35.0% | |
| !! | GAGAAGCATTTGTATTGCTA+AGG | - | chr8_2:49067693-49067712 | None:intergenic | 35.0% |
| CTTGATAGATATTACCCAAG+GGG | - | chr8_2:49067761-49067780 | None:intergenic | 35.0% | |
| !! | AGGCTTCAGTGATTTTAACA+AGG | - | chr8_2:49067834-49067853 | None:intergenic | 35.0% |
| ! | AAAGATTCACTGGTTAAGTG+GGG | - | chr8_2:49067883-49067902 | None:intergenic | 35.0% |
| ! | GAAAGATTCACTGGTTAAGT+GGG | - | chr8_2:49067884-49067903 | None:intergenic | 35.0% |
| ! | AGAAAGATTCACTGGTTAAG+TGG | - | chr8_2:49067885-49067904 | None:intergenic | 35.0% |
| ! | AGGATTCTAGAAAGATTCAC+TGG | - | chr8_2:49067893-49067912 | None:intergenic | 35.0% |
| CTATGTTAGCCAAATTCTTG+TGG | - | chr8_2:49067926-49067945 | None:intergenic | 35.0% | |
| ATGTGTGGAAGAAGATTAAG+GGG | - | chr8_2:49068075-49068094 | None:intergenic | 35.0% | |
| CATGTGTGGAAGAAGATTAA+GGG | - | chr8_2:49068076-49068095 | None:intergenic | 35.0% | |
| GATTTCTTTGATCTCCCAAA+AGG | + | chr8_2:49068118-49068137 | Msa1252230:intron | 35.0% | |
| ! | CAAAATTTTCTGTCCTTCAC+TGG | + | chr8_2:49068296-49068315 | Msa1252230:intron | 35.0% |
| ! | GATATTTGAGGTTCAGATTC+AGG | + | chr8_2:49068366-49068385 | Msa1252230:intron | 35.0% |
| AGATAAAAAGATACGGTGAG+AGG | + | chr8_2:49068448-49068467 | Msa1252230:intron | 35.0% | |
| GATAAAAAGATACGGTGAGA+GGG | + | chr8_2:49068449-49068468 | Msa1252230:intron | 35.0% | |
| ATAAAAAGATACGGTGAGAG+GGG | + | chr8_2:49068450-49068469 | Msa1252230:intron | 35.0% | |
| AGTTGAGATGTAGGAACAAT+TGG | - | chr8_2:49068998-49069017 | None:intergenic | 35.0% | |
| AAGGAGGAAAACAGCATTAA+TGG | - | chr8_2:49069303-49069322 | None:intergenic | 35.0% | |
| !!! | ATTAATGCTGTTTTCCTCCT+TGG | + | chr8_2:49069302-49069321 | Msa1252230:intron | 35.0% |
| !! | CTGCATTTGTTATTAGTCAG+TGG | + | chr8_2:49069555-49069574 | Msa1252230:intron | 35.0% |
| TCCATGCTTGTGTTTCAATT+TGG | + | chr8_2:49069582-49069601 | Msa1252230:intron | 35.0% | |
| ACCAAATTGAAACACAAGCA+TGG | - | chr8_2:49069586-49069605 | None:intergenic | 35.0% | |
| ! | TGTAATTTGTCACAACTCAC+AGG | + | chr8_2:49069671-49069690 | Msa1252230:intron | 35.0% |
| AAAGACGATGGAAAAGTGAA+GGG | - | chr8_2:49070072-49070091 | None:intergenic | 35.0% | |
| AAAAGACGATGGAAAAGTGA+AGG | - | chr8_2:49070073-49070092 | None:intergenic | 35.0% | |
| TTATCTCTTCGCTTCACTTT+AGG | + | chr8_2:49070091-49070110 | Msa1252230:intron | 35.0% | |
| AAATAACAACATGCTCCCAT+GGG | - | chr8_2:49070221-49070240 | None:intergenic | 35.0% | |
| AAAATAACAACATGCTCCCA+TGG | - | chr8_2:49070222-49070241 | None:intergenic | 35.0% | |
| CCGACAATACCAATATTGTT+AGG | - | chr8_2:49070408-49070427 | None:intergenic | 35.0% | |
| ! | CTCATGCATTTTCCATGTTA+CGG | + | chr8_2:49070608-49070627 | Msa1252230:CDS | 35.0% |
| TGGTTATCTAGATCATTTCC+TGG | + | chr8_2:49070665-49070684 | Msa1252230:CDS | 35.0% | |
| GGTTATCTAGATCATTTCCT+GGG | + | chr8_2:49070666-49070685 | Msa1252230:CDS | 35.0% | |
| AGGATGTGTATTAAGAGATG+TGG | - | chr8_2:49070832-49070851 | None:intergenic | 35.0% | |
| GAGAATCAGCAAGTAGTAGA+AGG | + | chr8_2:49065282-49065301 | Msa1252230:intron | 40.0% | |
| !! | GGAAAGAGCTTGTTAAGAAG+TGG | + | chr8_2:49065668-49065687 | Msa1252230:intron | 40.0% |
| AGGTCAATCTGTTCAACAGA+AGG | - | chr8_2:49065765-49065784 | None:intergenic | 40.0% | |
| GAACAGATTGACCTTCACTT+TGG | + | chr8_2:49065771-49065790 | Msa1252230:intron | 40.0% | |
| ! | TTTGGGGCAAGAACAGTAAA+TGG | + | chr8_2:49066157-49066176 | Msa1252230:CDS | 40.0% |
| TATATGGCTCCATCTCTTGA+AGG | + | chr8_2:49066205-49066224 | Msa1252230:CDS | 40.0% | |
| ATATGGCTCCATCTCTTGAA+GGG | + | chr8_2:49066206-49066225 | Msa1252230:CDS | 40.0% | |
| ! | TCTAAAACCCCTTCAAGAGA+TGG | - | chr8_2:49066217-49066236 | None:intergenic | 40.0% |
| ! | TTAGGACACTTAGGAAGTAC+AGG | - | chr8_2:49066244-49066263 | None:intergenic | 40.0% |
| ACTTCCTAAGTGTCCTAATC+AGG | + | chr8_2:49066246-49066265 | Msa1252230:CDS | 40.0% | |
| TTTCATACCAGGGAAATTGC+TGG | + | chr8_2:49066271-49066290 | Msa1252230:CDS | 40.0% | |
| ! | TTGGTGATAGATGTTGACAG+GGG | - | chr8_2:49066653-49066672 | None:intergenic | 40.0% |
| ! | GTTTGGTGATAGATGTTGAC+AGG | - | chr8_2:49066655-49066674 | None:intergenic | 40.0% |
| AGCTGTTAAGCTAGAAGGTT+TGG | - | chr8_2:49066672-49066691 | None:intergenic | 40.0% | |
| TCAACAAGGTACGAGAATCA+TGG | - | chr8_2:49066838-49066857 | None:intergenic | 40.0% | |
| AGAGAAGATGATACAGGCAA+TGG | - | chr8_2:49066873-49066892 | None:intergenic | 40.0% | |
| AACCTGAGAGAAGATGATAC+AGG | - | chr8_2:49066879-49066898 | None:intergenic | 40.0% | |
| GTATCATCTTCTCTCAGGTT+AGG | + | chr8_2:49066879-49066898 | Msa1252230:intron | 40.0% | |
| AGGAGTTTAATGCAGCAAAC+AGG | - | chr8_2:49066911-49066930 | None:intergenic | 40.0% | |
| TTCTGCTTTGTCGTTCATTC+AGG | - | chr8_2:49066931-49066950 | None:intergenic | 40.0% | |
| CACATGGATTCCAATTTGAG+AGG | + | chr8_2:49067110-49067129 | Msa1252230:intron | 40.0% | |
| CACATTACACAGACTGCAAA+GGG | + | chr8_2:49067172-49067191 | Msa1252230:intron | 40.0% | |
| ACATTACACAGACTGCAAAG+GGG | + | chr8_2:49067173-49067192 | Msa1252230:intron | 40.0% | |
| ! | GAGGAACTTTGTTTGGAGAA+TGG | - | chr8_2:49067255-49067274 | None:intergenic | 40.0% |
| TATTCCAGATTGCTTTCCAG+AGG | + | chr8_2:49067294-49067313 | Msa1252230:intron | 40.0% | |
| ATTCCAGATTGCTTTCCAGA+GGG | + | chr8_2:49067295-49067314 | Msa1252230:intron | 40.0% | |
| TCATCTTATCAGCCTAGCAA+AGG | - | chr8_2:49067359-49067378 | None:intergenic | 40.0% | |
| ! | GTCTGGGATTGTGAAAAAGA+TGG | - | chr8_2:49067406-49067425 | None:intergenic | 40.0% |
| CCCAGACAAATTTGTCTTCA+AGG | + | chr8_2:49067419-49067438 | Msa1252230:intron | 40.0% | |
| CCCTTGAAGACAAATTTGTC+TGG | - | chr8_2:49067423-49067442 | None:intergenic | 40.0% | |
| AGCTACAAGACAATGGAACA+AGG | - | chr8_2:49067516-49067535 | None:intergenic | 40.0% | |
| TTGTTCCATTGTCTTGTAGC+TGG | + | chr8_2:49067515-49067534 | Msa1252230:intron | 40.0% | |
| TTGATCCAGCTACAAGACAA+TGG | - | chr8_2:49067523-49067542 | None:intergenic | 40.0% | |
| AAGGATATTATTGAGCAGGG+TGG | - | chr8_2:49067674-49067693 | None:intergenic | 40.0% | |
| CTTCCAAAAAAGTTCCCCTT+GGG | + | chr8_2:49067744-49067763 | Msa1252230:intron | 40.0% | |
| !!! | TTACCCAAGGGGAACTTTTT+TGG | - | chr8_2:49067750-49067769 | None:intergenic | 40.0% |
| ! | GTATCCAACAGTGTTTTCCA+AGG | + | chr8_2:49067804-49067823 | Msa1252230:intron | 40.0% |
| !! | GATTTTAACAAGGCTCTCCT+TGG | - | chr8_2:49067824-49067843 | None:intergenic | 40.0% |
| TCCCAATTCCCACAAGAATT+TGG | + | chr8_2:49067914-49067933 | Msa1252230:intron | 40.0% | |
| GCCAAATTCTTGTGGGAATT+GGG | - | chr8_2:49067918-49067937 | None:intergenic | 40.0% | |
| AGCCAAATTCTTGTGGGAAT+TGG | - | chr8_2:49067919-49067938 | None:intergenic | 40.0% | |
| ATATCTTTACAGCAGCCTTC+AGG | + | chr8_2:49067953-49067972 | Msa1252230:intron | 40.0% | |
| TAGCAGCTCATGATGTAGTT+CGG | + | chr8_2:49067983-49068002 | Msa1252230:intron | 40.0% | |
| !! | TTGGGCTACTGCTTTTATGA+GGG | + | chr8_2:49068012-49068031 | Msa1252230:intron | 40.0% |
| ! | GAAAAGTTTTTGTCCAGAGC+TGG | - | chr8_2:49068046-49068065 | None:intergenic | 40.0% |
| CCATGTGTGGAAGAAGATTA+AGG | - | chr8_2:49068077-49068096 | None:intergenic | 40.0% | |
| CCTTAATCTTCTTCCACACA+TGG | + | chr8_2:49068074-49068093 | Msa1252230:intron | 40.0% | |
| ! | GTTTTGTCATTGACCATGTG+TGG | - | chr8_2:49068090-49068109 | None:intergenic | 40.0% |
| TTTGATCTCCCAAAAGGAAC+CGG | + | chr8_2:49068124-49068143 | Msa1252230:intron | 40.0% | |
| ! | TGAAATGATGGGAGTAACAG+TGG | - | chr8_2:49068176-49068195 | None:intergenic | 40.0% |
| GGTCAATCTAGATAAGTCTG+AGG | - | chr8_2:49068238-49068257 | None:intergenic | 40.0% | |
| !! | AAGCTTGTTGGTATGTGGAT+AGG | + | chr8_2:49068268-49068287 | Msa1252230:intron | 40.0% |
| TGATAGTCTCCTCTTCACAA+GGG | - | chr8_2:49068328-49068347 | None:intergenic | 40.0% | |
| ATGATAGTCTCCTCTTCACA+AGG | - | chr8_2:49068329-49068348 | None:intergenic | 40.0% | |
| TGTGAAGAGGAGACTATCAT+CGG | + | chr8_2:49068329-49068348 | Msa1252230:intron | 40.0% | |
| ! | AACAGGAGGTGTGATATTTG+AGG | + | chr8_2:49068354-49068373 | Msa1252230:intron | 40.0% |
| ! | GGCCATTGATGGAATTTTTG+TGG | + | chr8_2:49068387-49068406 | Msa1252230:intron | 40.0% |
| GGCCACAAAAATTCCATCAA+TGG | - | chr8_2:49068392-49068411 | None:intergenic | 40.0% | |
| ! | CTTATGGCTGATGTTTTGTC+AGG | - | chr8_2:49068430-49068449 | None:intergenic | 40.0% |
| TCATGAGATGTGGTATCTAG+CGG | - | chr8_2:49068586-49068605 | None:intergenic | 40.0% | |
| AAAGTGGTCATCATGAGATG+TGG | - | chr8_2:49068596-49068615 | None:intergenic | 40.0% | |
| TGAATGCTCTCACTGGATAA+AGG | - | chr8_2:49068792-49068811 | None:intergenic | 40.0% | |
| TCGTTATTGAATGCTCTCAC+TGG | - | chr8_2:49068799-49068818 | None:intergenic | 40.0% | |
| GCATCTTATGAGCTGCAAAA+TGG | - | chr8_2:49069219-49069238 | None:intergenic | 40.0% | |
| TCAATGATGTATCACCAAGG+AGG | - | chr8_2:49069319-49069338 | None:intergenic | 40.0% | |
| CTGCGTGTTTAGGAGTAAAT+AGG | - | chr8_2:49069492-49069511 | None:intergenic | 40.0% | |
| GAGATGACAGATCAAGGAAA+GGG | - | chr8_2:49069705-49069724 | None:intergenic | 40.0% | |
| CATATGGAGATGACAGATCA+AGG | - | chr8_2:49069711-49069730 | None:intergenic | 40.0% | |
| ! | ACATACCATAAGGGAGCATA+TGG | - | chr8_2:49069727-49069746 | None:intergenic | 40.0% |
| AGCGAAGAGATAAAAGACGA+TGG | - | chr8_2:49070084-49070103 | None:intergenic | 40.0% | |
| !! | TCTTCGCTTCACTTTAGGAT+CGG | + | chr8_2:49070096-49070115 | Msa1252230:intron | 40.0% |
| TAACCAAGAGGAAGCAACAT+CGG | - | chr8_2:49070136-49070155 | None:intergenic | 40.0% | |
| TGTGTGTGTGAGAGAGATTT+AGG | - | chr8_2:49070342-49070361 | None:intergenic | 40.0% | |
| ! | TGTACAATTCTTGATGACCC+AGG | - | chr8_2:49070686-49070705 | None:intergenic | 40.0% |
| TCAGTGAGGAAAAGGAGCTT+TGG | - | chr8_2:49065060-49065079 | None:intergenic | 45.0% | |
| CTCTTCACTATACTCATGGC+AGG | + | chr8_2:49065628-49065647 | Msa1252230:intron | 45.0% | |
| TATGGCTCCATCTCTTGAAG+GGG | + | chr8_2:49066207-49066226 | Msa1252230:CDS | 45.0% | |
| !!! | TGTTTTGAGGATGGCAGAAC+CGG | - | chr8_2:49066804-49066823 | None:intergenic | 45.0% |
| !!! | GATGACGGTTGTTTTGAGGA+TGG | - | chr8_2:49066813-49066832 | None:intergenic | 45.0% |
| !! | ACGAGAATCATGGTGGATGA+CGG | - | chr8_2:49066828-49066847 | None:intergenic | 45.0% |
| ACAAGGTACGAGAATCATGG+TGG | - | chr8_2:49066835-49066854 | None:intergenic | 45.0% | |
| GGTCATGAGTACTCTCAACA+AGG | - | chr8_2:49066852-49066871 | None:intergenic | 45.0% | |
| TGCCTGTATCATCTTCTCTC+AGG | + | chr8_2:49066874-49066893 | Msa1252230:intron | 45.0% | |
| ! | AGTGTTTTGTACCACCCCTT+TGG | - | chr8_2:49067022-49067041 | None:intergenic | 45.0% |
| CTGCAGTGTAAAGAAGAGCT+AGG | - | chr8_2:49067051-49067070 | None:intergenic | 45.0% | |
| !! | CATCAGGAGCTTTGAACGAT+TGG | - | chr8_2:49067086-49067105 | None:intergenic | 45.0% |
| TCGTTCAAAGCTCCTGATGT+TGG | + | chr8_2:49067087-49067106 | Msa1252230:intron | 45.0% | |
| CCTTTGCAGTCTGTGTAATG+TGG | - | chr8_2:49067174-49067193 | None:intergenic | 45.0% | |
| CCACATTACACAGACTGCAA+AGG | + | chr8_2:49067171-49067190 | Msa1252230:intron | 45.0% | |
| TTCCAGATTGCTTTCCAGAG+GGG | + | chr8_2:49067296-49067315 | Msa1252230:intron | 45.0% | |
| TCCAGAGGGGACTATCAAAT+TGG | + | chr8_2:49067309-49067328 | Msa1252230:intron | 45.0% | |
| GGGACTATCAAATTGGCTGA+GGG | + | chr8_2:49067316-49067335 | Msa1252230:intron | 45.0% | |
| GGACTATCAAATTGGCTGAG+GGG | + | chr8_2:49067317-49067336 | Msa1252230:intron | 45.0% | |
| TATCAGCCTAGCAAAGGATC+TGG | - | chr8_2:49067353-49067372 | None:intergenic | 45.0% | |
| TTTGTCTTCAAGGGGCTGAA+AGG | + | chr8_2:49067429-49067448 | Msa1252230:intron | 45.0% | |
| AGGGGGACAAAGTCAAGATT+TGG | - | chr8_2:49067634-49067653 | None:intergenic | 45.0% | |
| AAGATGGATCATTGGCAAGG+GGG | - | chr8_2:49067651-49067670 | None:intergenic | 45.0% | |
| GAAGATGGATCATTGGCAAG+GGG | - | chr8_2:49067652-49067671 | None:intergenic | 45.0% | |
| GGAAGATGGATCATTGGCAA+GGG | - | chr8_2:49067653-49067672 | None:intergenic | 45.0% | |
| TGGAAGATGGATCATTGGCA+AGG | - | chr8_2:49067654-49067673 | None:intergenic | 45.0% | |
| TTATTGAGCAGGGTGGAAGA+TGG | - | chr8_2:49067667-49067686 | None:intergenic | 45.0% | |
| GCTTCCAAAAAAGTTCCCCT+TGG | + | chr8_2:49067743-49067762 | Msa1252230:intron | 45.0% | |
| ! | ATCAAGTAGAGTGCTTTCGC+TGG | + | chr8_2:49067775-49067794 | Msa1252230:intron | 45.0% |
| CTCTCCTTGGAAAACACTGT+TGG | - | chr8_2:49067811-49067830 | None:intergenic | 45.0% | |
| !! | AAAGGTGGTCTGGGTTTTAG+AGG | - | chr8_2:49067854-49067873 | None:intergenic | 45.0% |
| ! | TAAGTGGGGAAGCATAAAGG+TGG | - | chr8_2:49067869-49067888 | None:intergenic | 45.0% |
| ! | GGTTAAGTGGGGAAGCATAA+AGG | - | chr8_2:49067872-49067891 | None:intergenic | 45.0% |
| ATTCTTGTGGGAATTGGGAG+AGG | - | chr8_2:49067913-49067932 | None:intergenic | 45.0% | |
| AGCTGCTACAAGATTCCTGA+AGG | - | chr8_2:49067971-49067990 | None:intergenic | 45.0% | |
| AGCAGCTCATGATGTAGTTC+GGG | + | chr8_2:49067984-49068003 | Msa1252230:intron | 45.0% | |
| TGATGTAGTTCGGGATTGCT+TGG | + | chr8_2:49067993-49068012 | Msa1252230:intron | 45.0% | |
| GATGTAGTTCGGGATTGCTT+GGG | + | chr8_2:49067994-49068013 | Msa1252230:intron | 45.0% | |
| !! | CTTGGGCTACTGCTTTTATG+AGG | + | chr8_2:49068011-49068030 | Msa1252230:intron | 45.0% |
| GAAGAAGATTAAGGGGTGGA+AGG | - | chr8_2:49068068-49068087 | None:intergenic | 45.0% | |
| TGTGGAAGAAGATTAAGGGG+TGG | - | chr8_2:49068072-49068091 | None:intergenic | 45.0% | |
| ! | TACGCTTTCCGGTTCCTTTT+GGG | - | chr8_2:49068135-49068154 | None:intergenic | 45.0% |
| ! | AACCGGAAAGCGTAGATATC+AGG | + | chr8_2:49068141-49068160 | Msa1252230:intron | 45.0% |
| CACCTGATATCTACGCTTTC+CGG | - | chr8_2:49068146-49068165 | None:intergenic | 45.0% | |
| ! | GAAAGCGTAGATATCAGGTG+TGG | + | chr8_2:49068146-49068165 | Msa1252230:intron | 45.0% |
| CCAACAAGCTTCCGAACAAA+TGG | - | chr8_2:49068259-49068278 | None:intergenic | 45.0% | |
| CCATTTGTTCGGAAGCTTGT+TGG | + | chr8_2:49068256-49068275 | Msa1252230:intron | 45.0% | |
| !! | TTCGGAAGCTTGTTGGTATG+TGG | + | chr8_2:49068263-49068282 | Msa1252230:intron | 45.0% |
| GTTCAGATTCAGGCCATTGA+TGG | + | chr8_2:49068376-49068395 | Msa1252230:intron | 45.0% | |
| ! | GAATTTTTGTGGCCTCTCTG+TGG | + | chr8_2:49068398-49068417 | Msa1252230:intron | 45.0% |
| GTCAGGTTTAATCCACAGAG+AGG | - | chr8_2:49068413-49068432 | None:intergenic | 45.0% | |
| AAAGCTGACACATCCCATGA+TGG | + | chr8_2:49068548-49068567 | Msa1252230:intron | 45.0% | |
| TCCCATGATGGTTGCAATCA+TGG | + | chr8_2:49068560-49068579 | Msa1252230:intron | 45.0% | |
| GCCATGATTGCAACCATCAT+GGG | - | chr8_2:49068564-49068583 | None:intergenic | 45.0% | |
| CTGGAAATCTCTGCGTGTTT+AGG | - | chr8_2:49069502-49069521 | None:intergenic | 45.0% | |
| GACAGATCAAGGAAAGGGTA+AGG | - | chr8_2:49069700-49069719 | None:intergenic | 45.0% | |
| GGAGATGACAGATCAAGGAA+AGG | - | chr8_2:49069706-49069725 | None:intergenic | 45.0% | |
| CATCTCCATATGCTCCCTTA+TGG | + | chr8_2:49069719-49069738 | Msa1252230:CDS | 45.0% | |
| GAGGAAGCAACATCGGATAA+CGG | - | chr8_2:49070129-49070148 | None:intergenic | 45.0% | |
| ! | TATCCGATGTTGCTTCCTCT+TGG | + | chr8_2:49070130-49070149 | Msa1252230:intron | 45.0% |
| CTCTGACAGCATTAACCAAG+AGG | - | chr8_2:49070148-49070167 | None:intergenic | 45.0% | |
| ACACGTGCTTATTCTTCCCA+TGG | + | chr8_2:49070202-49070221 | Msa1252230:intron | 45.0% | |
| CACGTGCTTATTCTTCCCAT+GGG | + | chr8_2:49070203-49070222 | Msa1252230:intron | 45.0% | |
| ! | ACACACAACTACGAGGTACT+AGG | + | chr8_2:49070357-49070376 | Msa1252230:intron | 45.0% |
| ! | CGAGGTACTAGGTTCAAACT+CGG | + | chr8_2:49070368-49070387 | Msa1252230:intron | 45.0% |
| ! | GAGGTACTAGGTTCAAACTC+GGG | + | chr8_2:49070369-49070388 | Msa1252230:intron | 45.0% |
| ! | TTGGTATTGTCGGTTGAGCT+AGG | + | chr8_2:49070415-49070434 | Msa1252230:intron | 45.0% |
| CAGGGAAATTGCTGGTGTGT+GGG | + | chr8_2:49066279-49066298 | Msa1252230:CDS | 50.0% | |
| AGGGAAATTGCTGGTGTGTG+GGG | + | chr8_2:49066280-49066299 | Msa1252230:CDS | 50.0% | |
| CATGATTATCAGACCCCAGC+CGG | + | chr8_2:49066782-49066801 | Msa1252230:intron | 50.0% | |
| !! | GGTGGATGACGGTTGTTTTG+AGG | - | chr8_2:49066817-49066836 | None:intergenic | 50.0% |
| CACCATTGTTCCGAGCAGAT+CGG | + | chr8_2:49066991-49067010 | Msa1252230:intron | 50.0% | |
| AAGCTCCTGATGTTGGCACA+TGG | + | chr8_2:49067094-49067113 | Msa1252230:intron | 50.0% | |
| GGAATCCATGTGCCAACATC+AGG | - | chr8_2:49067102-49067121 | None:intergenic | 50.0% | |
| ! | GCCAATTTGATAGTCCCCTC+TGG | - | chr8_2:49067313-49067332 | None:intergenic | 50.0% |
| GGGGACTATCAAATTGGCTG+AGG | + | chr8_2:49067315-49067334 | Msa1252230:intron | 50.0% | |
| CATCTCCTCACAAAACCTCC+GGG | - | chr8_2:49067584-49067603 | None:intergenic | 50.0% | |
| CCATCTCCTCACAAAACCTC+CGG | - | chr8_2:49067585-49067604 | None:intergenic | 50.0% | |
| ! | GTTTTGTGAGGAGATGGCCA+TGG | + | chr8_2:49067588-49067607 | Msa1252230:intron | 50.0% |
| CAGGGTGGAAGATGGATCAT+TGG | - | chr8_2:49067659-49067678 | None:intergenic | 50.0% | |
| ! | GGGAAGCATAAAGGTGGTCT+GGG | - | chr8_2:49067863-49067882 | None:intergenic | 50.0% |
| ! | CTACGCTTTCCGGTTCCTTT+TGG | - | chr8_2:49068136-49068155 | None:intergenic | 50.0% |
| ACAAGGGAAAACGCCAGTGA+AGG | - | chr8_2:49068312-49068331 | None:intergenic | 50.0% | |
| ! | TGGCGTTTTCCCTTGTGAAG+AGG | + | chr8_2:49068316-49068335 | Msa1252230:intron | 50.0% |
| GGAGACTATCATCGGCAAAC+AGG | + | chr8_2:49068337-49068356 | Msa1252230:intron | 50.0% | |
| GACTATCATCGGCAAACAGG+AGG | + | chr8_2:49068340-49068359 | Msa1252230:intron | 50.0% | |
| TTGTCTCAACCCTCTCTCCA+GGG | + | chr8_2:49068479-49068498 | Msa1252230:intron | 50.0% | |
| TCCAGGGTGAAACTGGATCT+GGG | + | chr8_2:49068495-49068514 | Msa1252230:intron | 50.0% | |
| GGCCATGATTGCAACCATCA+TGG | - | chr8_2:49068565-49068584 | None:intergenic | 50.0% | |
| CCACTCTGCAGTTGAGATGT+AGG | - | chr8_2:49069007-49069026 | None:intergenic | 50.0% | |
| CCTACATCTCAACTGCAGAG+TGG | + | chr8_2:49069004-49069023 | Msa1252230:intron | 50.0% | |
| CTCACACACACACAACTACG+AGG | + | chr8_2:49070350-49070369 | Msa1252230:intron | 50.0% | |
| GTCGGTTGAGCTAGGTCTTA+CGG | + | chr8_2:49070423-49070442 | Msa1252230:intron | 50.0% | |
| CCACACACCAGCAATTTCCC+TGG | - | chr8_2:49066281-49066300 | None:intergenic | 55.0% | |
| CCAGGGAAATTGCTGGTGTG+TGG | + | chr8_2:49066278-49066297 | Msa1252230:CDS | 55.0% | |
| CGGCTGGGGTCTGATAATCA+TGG | - | chr8_2:49066784-49066803 | None:intergenic | 55.0% | |
| GTCCGATCTGCTCGGAACAA+TGG | - | chr8_2:49066996-49067015 | None:intergenic | 55.0% | |
| ! | TTTGGCTCGTCCGATCTGCT+CGG | - | chr8_2:49067004-49067023 | None:intergenic | 55.0% |
| AGCAGATCGGACGAGCCAAA+GGG | + | chr8_2:49067004-49067023 | Msa1252230:intron | 55.0% | |
| ! | GTCCCCTCTGGAAAGCAATC+TGG | - | chr8_2:49067301-49067320 | None:intergenic | 55.0% |
| ATCAAATTGGCTGAGGGGCC+TGG | + | chr8_2:49067322-49067341 | Msa1252230:intron | 55.0% | |
| GTGAGGCCAGATCCTTTGCT+AGG | + | chr8_2:49067344-49067363 | Msa1252230:intron | 55.0% | |
| ! | TTCAAGGGGCTGAAAGGCAC+TGG | + | chr8_2:49067435-49067454 | Msa1252230:intron | 55.0% |
| !! | TGAAAGGCACTGGAATCGCC+AGG | + | chr8_2:49067445-49067464 | Msa1252230:intron | 55.0% |
| !! | GAAAGGCACTGGAATCGCCA+GGG | + | chr8_2:49067446-49067465 | Msa1252230:intron | 55.0% |
| !! | CCGGAGGTTTTGTGAGGAGA+TGG | + | chr8_2:49067582-49067601 | Msa1252230:intron | 55.0% |
| ! | GGGGAAGCATAAAGGTGGTC+TGG | - | chr8_2:49067864-49067883 | None:intergenic | 55.0% |
| ! | GAGGGTTTGTTTGCCAGCTC+TGG | + | chr8_2:49068030-49068049 | Msa1252230:intron | 55.0% |
| CTGGAGAGAGGGTTGAGACA+AGG | - | chr8_2:49068480-49068499 | None:intergenic | 55.0% | |
| CTTGTCTCAACCCTCTCTCC+AGG | + | chr8_2:49068478-49068497 | Msa1252230:intron | 55.0% | |
| CCAGTTTCACCCTGGAGAGA+GGG | - | chr8_2:49068491-49068510 | None:intergenic | 55.0% | |
| TCCAGTTTCACCCTGGAGAG+AGG | - | chr8_2:49068492-49068511 | None:intergenic | 55.0% | |
| CTCCAGGGTGAAACTGGATC+TGG | + | chr8_2:49068494-49068513 | Msa1252230:intron | 55.0% | |
| TGAGGATGGCAGAACCGGCT+GGG | - | chr8_2:49066799-49066818 | None:intergenic | 60.0% | |
| TTGAGGATGGCAGAACCGGC+TGG | - | chr8_2:49066800-49066819 | None:intergenic | 60.0% | |
| GAGCAGATCGGACGAGCCAA+AGG | + | chr8_2:49067003-49067022 | Msa1252230:intron | 60.0% | |
| GCAGATCGGACGAGCCAAAG+GGG | + | chr8_2:49067005-49067024 | Msa1252230:intron | 60.0% | |
| GCAAAGGATCTGGCCTCACC+AGG | - | chr8_2:49067343-49067362 | None:intergenic | 60.0% | |
| TCATCTTGCAGACCCGAGCC+CGG | + | chr8_2:49067563-49067582 | Msa1252230:intron | 60.0% | |
| CTCACAAAACCTCCGGGCTC+GGG | - | chr8_2:49067578-49067597 | None:intergenic | 60.0% | |
| CCTCACAAAACCTCCGGGCT+CGG | - | chr8_2:49067579-49067598 | None:intergenic | 60.0% | |
| GAGGAGATGGCCATGGTCTG+TGG | + | chr8_2:49067595-49067614 | Msa1252230:intron | 60.0% | |
| GATAAGGGGGCCACAGACCA+TGG | - | chr8_2:49067608-49067627 | None:intergenic | 60.0% | |
| CCCTCTCTCCAGGGTGAAAC+TGG | + | chr8_2:49068488-49068507 | Msa1252230:intron | 60.0% | |
| GCCCAGATCCAGTTTCACCC+TGG | - | chr8_2:49068499-49068518 | None:intergenic | 60.0% | |
| GAGGATGGCAGAACCGGCTG+GGG | - | chr8_2:49066798-49066817 | None:intergenic | 65.0% | |
| GATCGGACGAGCCAAAGGGG+TGG | + | chr8_2:49067008-49067027 | Msa1252230:intron | 65.0% | |
| ATTGGCTGAGGGGCCTGGTG+AGG | + | chr8_2:49067327-49067346 | Msa1252230:intron | 65.0% | |
| !! | CCGAGCCCGGAGGTTTTGTG+AGG | + | chr8_2:49067576-49067595 | Msa1252230:intron | 65.0% |
| TCTTGCAGACCCGAGCCCGG+AGG | + | chr8_2:49067566-49067585 | Msa1252230:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 49065045 | 49070859 | 49065045 | ID=Msa1252230;Name=Msa1252230 |
| chr8_2 | mRNA | 49065045 | 49070859 | 49065045 | ID=Msa1252230-mRNA-1;Parent=Msa1252230;Name=Msa1252230-mRNA-1;_AED=0.41;_eAED=0.44;_QI=0|0.4|0.5|1|0.2|0.33|6|150|250 |
| chr8_2 | exon | 49065045 | 49065241 | 49065045 | ID=Msa1252230-mRNA-1:exon:14824;Parent=Msa1252230-mRNA-1 |
| chr8_2 | exon | 49065777 | 49065810 | 49065777 | ID=Msa1252230-mRNA-1:exon:14825;Parent=Msa1252230-mRNA-1 |
| chr8_2 | exon | 49066109 | 49066327 | 49066109 | ID=Msa1252230-mRNA-1:exon:14826;Parent=Msa1252230-mRNA-1 |
| chr8_2 | exon | 49068742 | 49068835 | 49068742 | ID=Msa1252230-mRNA-1:exon:14827;Parent=Msa1252230-mRNA-1 |
| chr8_2 | exon | 49069693 | 49069783 | 49069693 | ID=Msa1252230-mRNA-1:exon:14828;Parent=Msa1252230-mRNA-1 |
| chr8_2 | exon | 49070592 | 49070859 | 49070592 | ID=Msa1252230-mRNA-1:exon:14829;Parent=Msa1252230-mRNA-1 |
| chr8_2 | CDS | 49065045 | 49065241 | 49065045 | ID=Msa1252230-mRNA-1:cds;Parent=Msa1252230-mRNA-1 |
| chr8_2 | CDS | 49065777 | 49065810 | 49065777 | ID=Msa1252230-mRNA-1:cds;Parent=Msa1252230-mRNA-1 |
| chr8_2 | CDS | 49066109 | 49066327 | 49066109 | ID=Msa1252230-mRNA-1:cds;Parent=Msa1252230-mRNA-1 |
| chr8_2 | CDS | 49068742 | 49068835 | 49068742 | ID=Msa1252230-mRNA-1:cds;Parent=Msa1252230-mRNA-1 |
| chr8_2 | CDS | 49069693 | 49069783 | 49069693 | ID=Msa1252230-mRNA-1:cds;Parent=Msa1252230-mRNA-1 |
| chr8_2 | CDS | 49070592 | 49070709 | 49070592 | ID=Msa1252230-mRNA-1:cds;Parent=Msa1252230-mRNA-1 |
| chr8_2 | three_prime_UTR | 49070710 | 49070859 | 49070710 | ID=Msa1252230-mRNA-1:three_prime_utr;Parent=Msa1252230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
