AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017160 MtrunA17_Chr1g0168711 77.695 269 2 2 1 211 237 505 6.83e-141 403
Msa0017160 MtrunA17_Chr1g0186091 60.595 269 31 3 1 211 240 491 2.14e-105 312
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017160 AT4G13430.1 68.401 269 27 2 1 211 241 509 4.70e-124 360

Find 95 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTACCTTACAGATTAT+TGG 0.189248 1_1:+28550080 Msa0017160:intron
TAGATTTGATGTCTCAAAAT+TGG 0.219082 1_1:+28554375 Msa0017160:CDS
TTGCAGACCTTCTGTGTTGC+AGG 0.256714 1_1:-28555079 None:intergenic
CAGGGAAGGTGAAATATATT+TGG 0.262996 1_1:+28555778 Msa0017160:CDS
CGTTGTTCCTTTGAAGGTTT+GGG 0.263490 1_1:+28548266 Msa0017160:five_prime_UTR
TGACTGCGTTGTTCCTTTGA+AGG 0.304287 1_1:+28548260 Msa0017160:five_prime_UTR
AACCACAAATAGAAACTTTC+CGG 0.305213 1_1:+28555742 Msa0017160:CDS
TCTATATTTGCAGGGTAAAA+AGG 0.306488 1_1:+28555033 Msa0017160:intron
ATTCTTTCTGCAGGTTCTCT+TGG 0.309426 1_1:+28548693 Msa0017160:intron
CTTGCCAAAGCACGGTTATC+TGG 0.321138 1_1:-28554521 None:intergenic
AATAGCTTAAGTTCTAAGTT+TGG 0.329897 1_1:-28555934 None:intergenic
CCCCGGAAAGTTTCTATTTG+TGG 0.334617 1_1:-28555744 None:intergenic
AACTCAACCAATTCATTAAC+AGG 0.336569 1_1:-28556004 None:intergenic
GCTTGCTGGTCACTATATAC+TGG 0.339417 1_1:-28553797 None:intergenic
GCGTTGTTCCTTTGAAGGTT+TGG 0.341122 1_1:+28548265 Msa0017160:five_prime_UTR
TGACAAACACCTTTGTAATC+TGG 0.349047 1_1:-28548542 None:intergenic
ACTTGTACTGCTGGAGCATT+TGG 0.355022 1_1:+28548730 Msa0017160:five_prime_UTR
CAATACAATAGAATACAAAA+TGG 0.355596 1_1:-28555882 None:intergenic
TATTTATATGTAATGCTATC+TGG 0.356860 1_1:-28550352 None:intergenic
ACTTTGTCTACCTTGCTTGC+TGG 0.358067 1_1:-28553811 None:intergenic
TCTCAGCATTATAGCATATA+CGG 0.361789 1_1:-28548218 None:intergenic
GCATTTGGTCAATTTGCAAC+AGG 0.376621 1_1:+28548745 Msa0017160:five_prime_UTR
TTCTTTCTGCAGGTTCTCTT+GGG 0.379309 1_1:+28548694 Msa0017160:intron
AATTGTGCCTGTTAATGAAT+TGG 0.404649 1_1:+28555997 Msa0017160:three_prime_UTR
GCAGATGCTGCAGCTGTATA+TGG 0.406662 1_1:-28555806 None:intergenic
ACCACAAATAGAAACTTTCC+GGG 0.409827 1_1:+28555743 Msa0017160:CDS
TACAAATCAATGGAGTTTGT+TGG 0.414163 1_1:+28550128 Msa0017160:CDS
TGCAACATGGTTGTTGAAGC+TGG 0.422479 1_1:+28550307 Msa0017160:CDS
CAGGAAGGACATTGCAGGCC+AGG 0.422576 1_1:+28548578 Msa0017160:five_prime_UTR
TCCAACTTTGAGATTTGTAA+TGG 0.425112 1_1:+28549936 Msa0017160:exon
TTGCTCAGGAAGGACATTGC+AGG 0.427526 1_1:+28548573 Msa0017160:five_prime_UTR
TCCATTACAAATCTCAAAGT+TGG 0.438795 1_1:-28549937 None:intergenic
GGTCAATTTGCAACAGGGAT+TGG 0.439036 1_1:+28548751 Msa0017160:five_prime_UTR
TTCACCAGATAACCGTGCTT+TGG 0.440182 1_1:+28554517 Msa0017160:CDS
CCCTGCACCCAACACAAAAC+CGG 0.444047 1_1:-28548785 None:intergenic
TTGTCACATCGCTCTTGCTC+AGG 0.452572 1_1:+28548559 Msa0017160:five_prime_UTR
AGAAACTTTCCGGGGCGAAT+GGG 0.454116 1_1:+28555752 Msa0017160:CDS
TTATAAATCATGTGATTCAT+AGG 0.457461 1_1:+28548156 Msa0017160:five_prime_UTR
GCTTACTGCAAGAACTCTCT+TGG 0.458711 1_1:-28555851 None:intergenic
TAGAAACTTTCCGGGGCGAA+TGG 0.460998 1_1:+28555751 Msa0017160:CDS
TCACTATATACTGGTTCATA+TGG 0.463569 1_1:-28553788 None:intergenic
TAAACTAATCGAACCTCTCC+TGG 0.468166 1_1:-28548596 None:intergenic
TCACGATCCCAAACCTTCAA+AGG 0.477704 1_1:-28548273 None:intergenic
GATTCTCACACTTGTACTGC+TGG 0.482639 1_1:+28548721 Msa0017160:five_prime_UTR
CATCACTTGTGAATATATAG+TGG 0.485083 1_1:-28548317 None:intergenic
TTCTATTGTATTGTATACAT+TGG 0.488145 1_1:+28555892 Msa0017160:three_prime_UTR
TACTTTATGAGAGTATCATA+TGG 0.496180 1_1:+28556058 Msa0017160:three_prime_UTR
ACTTTGAGATTTGTAATGGA+TGG 0.496494 1_1:+28549940 Msa0017160:exon
TGCAGACCTTCTGTGTTGCA+GGG 0.496669 1_1:-28555078 None:intergenic
GAAGGTTTGGGATCGTGAAA+AGG 0.504446 1_1:+28548278 Msa0017160:five_prime_UTR
TCTTGGATCAGTAACATAAC+CGG 0.516702 1_1:-28555834 None:intergenic
GCCAAGTTATTTGCTTGCCA+AGG 0.519501 1_1:+28549969 Msa0017160:CDS
GGGATTGGTAATACTGATGC+CGG 0.521210 1_1:+28548766 Msa0017160:five_prime_UTR
CTTGTGAATATATAGTGGTC+GGG 0.527851 1_1:-28548312 None:intergenic
TACTTGCAGAATCAAATCCT+TGG 0.528971 1_1:-28549986 None:intergenic
TAAATCATGTGATTCATAGG+AGG 0.531336 1_1:+28548159 Msa0017160:five_prime_UTR
TTCCGGGGCGAATGGGACAC+AGG 0.531615 1_1:+28555759 Msa0017160:CDS
TGCACTCTCTTGCCAAAGCA+CGG 0.532465 1_1:-28554529 None:intergenic
ACTTGTGAATATATAGTGGT+CGG 0.545790 1_1:-28548313 None:intergenic
TCCTTGGCAAGCAAATAACT+TGG 0.546758 1_1:-28549970 None:intergenic
ATTGGAGCCACTGGTTGCCA+AGG 0.549517 1_1:+28554393 Msa0017160:CDS
TATATAGTGACCAGCAAGCA+AGG 0.550703 1_1:+28553801 Msa0017160:CDS
GGGCGAATGGGACACAGGGA+AGG 0.553009 1_1:+28555764 Msa0017160:CDS
AGTATACATAGGATCTTGTA+CGG 0.554141 1_1:+28554571 Msa0017160:CDS
TGGTGCAACTTACAAATCAA+TGG 0.554753 1_1:+28550118 Msa0017160:CDS
TGCTTTGGCAAGAGAGTGCA+AGG 0.558334 1_1:+28554532 Msa0017160:CDS
GTTGAAGCTGGAGGAAAGAA+TGG 0.560027 1_1:+28550319 Msa0017160:CDS
ATTACAAATCTCAAAGTTGG+AGG 0.561995 1_1:-28549934 None:intergenic
AAATCATGTGATTCATAGGA+GGG 0.562383 1_1:+28548160 Msa0017160:five_prime_UTR
TCTTGTCCCTGCAACACAGA+AGG 0.562826 1_1:+28555072 Msa0017160:CDS
TGTCTCAAAATTGGAGCCAC+TGG 0.563417 1_1:+28554384 Msa0017160:CDS
ATTGGTGAAATAAGTGTGGC+TGG 0.569430 1_1:+28550098 Msa0017160:CDS
CATTTGGTCAATTTGCAACA+GGG 0.572263 1_1:+28548746 Msa0017160:five_prime_UTR
GCACGGTTATCTGGTGAATG+AGG 0.581249 1_1:-28554512 None:intergenic
CATTACATATAAATATCTTG+AGG 0.587292 1_1:+28550360 Msa0017160:CDS
CACATCGCTCTTGCTCAGGA+AGG 0.591175 1_1:+28548563 Msa0017160:five_prime_UTR
GCTGCAGCATCTGCATTGAC+CGG 0.594770 1_1:+28555815 Msa0017160:CDS
AGGACATTGCAGGCCAGGAG+AGG 0.598823 1_1:+28548583 Msa0017160:five_prime_UTR
GAGTATGTCAACATTGCGAT+TGG 0.598835 1_1:-28548346 None:intergenic
TCCCTGTGTCCCATTCGCCC+CGG 0.605947 1_1:-28555761 None:intergenic
AAAATTGACAGAGTATACAT+AGG 0.608193 1_1:+28554560 Msa0017160:CDS
TACATAGGATCTTGTACGGG+TGG 0.615320 1_1:+28554575 Msa0017160:CDS
TCCGGGGCGAATGGGACACA+GGG 0.617857 1_1:+28555760 Msa0017160:CDS
CAGGTAAATCCAGATTACAA+AGG 0.639525 1_1:+28548533 Msa0017160:intron
AGTACTTGATATCTTGCTCG+TGG 0.647484 1_1:-28548380 None:intergenic
GTATACATAGGATCTTGTAC+GGG 0.648403 1_1:+28554572 Msa0017160:CDS
TGTTGCAGGGACAAGAAATG+TGG 0.650698 1_1:-28555065 None:intergenic
GGACTAACCTTGGCAACCAG+TGG 0.655420 1_1:-28554400 None:intergenic
ATAACAATTGAAGATGACAA+AGG 0.657480 1_1:-28556091 None:intergenic
TTATATGTAATGCTATCTGG+AGG 0.666348 1_1:-28550349 None:intergenic
ACGGATGACATTGTGCAACA+TGG 0.689455 1_1:+28550294 Msa0017160:CDS
GTTGCAGGGACAAGAAATGT+GGG 0.707328 1_1:-28555064 None:intergenic
CCACAAATAGAAACTTTCCG+GGG 0.722228 1_1:+28555744 Msa0017160:CDS
GATTATTGGTGAAATAAGTG+TGG 0.724786 1_1:+28550094 Msa0017160:intron
AACATGGTTGTTGAAGCTGG+AGG 0.764525 1_1:+28550310 Msa0017160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTTTCAATATAGATT+TGG + chr1_1:28548448-28548467 Msa0017160:intron 15.0%
!!! ACTTTTTTTTTTTTTTTTGG+TGG - chr1_1:28549602-28549621 None:intergenic 15.0%
!! AAATAGATAATCAGAAATTA+AGG + chr1_1:28549841-28549860 Msa0017160:intron 15.0%
!! TTCTTTATTGTATTTAAGAA+TGG + chr1_1:28550518-28550537 Msa0017160:intron 15.0%
!! AAAGTAAAACATAATAGAAA+TGG + chr1_1:28550614-28550633 Msa0017160:intron 15.0%
!! AATCAAATAACATCTTTAAA+AGG + chr1_1:28554067-28554086 Msa0017160:intron 15.0%
!!! ATCAAATAACATCTTTAAAA+GGG + chr1_1:28554068-28554087 Msa0017160:intron 15.0%
!!! CATCTATTAATAAATTTTCA+TGG + chr1_1:28555141-28555160 Msa0017160:intron 15.0%
!!! TAAATTTTCATGGTAAATTA+TGG + chr1_1:28555151-28555170 Msa0017160:intron 15.0%
!!! ATTTTCTAATGCTTTATTAA+TGG + chr1_1:28555183-28555202 Msa0017160:intron 15.0%
!! AAAATATATTAAAAGATGCT+GGG - chr1_1:28555395-28555414 None:intergenic 15.0%
!! AAAAATATATTAAAAGATGC+TGG - chr1_1:28555396-28555415 None:intergenic 15.0%
!!! AGCATCTTTTAATATATTTT+TGG + chr1_1:28555395-28555414 Msa0017160:intron 15.0%
!! TTATAAATCATGTGATTCAT+AGG + chr1_1:28548156-28548175 Msa0017160:five_prime_UTR 20.0%
!!! CAAGTACTTTTATGATATTA+AGG + chr1_1:28548395-28548414 Msa0017160:five_prime_UTR 20.0%
!!! TAAGGATCTTAGTAATTTTA+AGG + chr1_1:28548413-28548432 Msa0017160:five_prime_UTR 20.0%
!! TATTGAAAAAATCATAAGAG+TGG - chr1_1:28548442-28548461 None:intergenic 20.0%
!! GTAAATAAAGATCATGATAT+AGG - chr1_1:28548873-28548892 None:intergenic 20.0%
!!! ATGATCTTTATTTACTTTCA+GGG + chr1_1:28548878-28548897 Msa0017160:intron 20.0%
!!! TTTTTTTTTTTTTTTGGTGG+TGG - chr1_1:28549599-28549618 None:intergenic 20.0%
!!! GGGACTTTTTTTTTTTTTTT+TGG - chr1_1:28549605-28549624 None:intergenic 20.0%
!! GGGATATAAGATAAATAAAA+AGG - chr1_1:28549899-28549918 None:intergenic 20.0%
!! TATTTATATGTAATGCTATC+TGG - chr1_1:28550355-28550374 None:intergenic 20.0%
!! CATTACATATAAATATCTTG+AGG + chr1_1:28550360-28550379 Msa0017160:CDS 20.0%
!! ATTGTATTTAAGAATGGTTT+AGG + chr1_1:28550524-28550543 Msa0017160:intron 20.0%
!! TAAAACATAATAGAAATGGT+AGG + chr1_1:28550618-28550637 Msa0017160:intron 20.0%
!! TAAATAAAAAAGCAACTTGT+TGG - chr1_1:28550982-28551001 None:intergenic 20.0%
!! TAATTGAAATTAAGGAATAC+TGG + chr1_1:28551015-28551034 Msa0017160:intron 20.0%
!! TTTCCTTATAGATATGAATT+AGG + chr1_1:28551452-28551471 Msa0017160:intron 20.0%
!! CAATAAATTTGGAAACTTAA+TGG - chr1_1:28552897-28552916 None:intergenic 20.0%
!! CATTAAGTTTCCAAATTTAT+TGG + chr1_1:28552895-28552914 Msa0017160:intron 20.0%
!!! TTTTCATAAGTTATCTTAGA+GGG + chr1_1:28553346-28553365 Msa0017160:intron 20.0%
!!! TGTCATGTTTTTCTTATTAT+TGG + chr1_1:28553586-28553605 Msa0017160:intron 20.0%
!!! TTGTTTCCGTTTTATTTTTA+GGG + chr1_1:28553752-28553771 Msa0017160:intron 20.0%
!!! TCAAATAACATCTTTAAAAG+GGG + chr1_1:28554069-28554088 Msa0017160:intron 20.0%
!!! ATTTTATACAAGAGAAAAAC+TGG + chr1_1:28554259-28554278 Msa0017160:intron 20.0%
!!! TACTAATACTGTTTTTTTGT+TGG + chr1_1:28554330-28554349 Msa0017160:intron 20.0%
!! TAGATTTATAGATATGCAAT+GGG - chr1_1:28554698-28554717 None:intergenic 20.0%
!! ATAGATTTATAGATATGCAA+TGG - chr1_1:28554699-28554718 None:intergenic 20.0%
!!! AAAAAAGCAGTATTTTCAAT+TGG + chr1_1:28554732-28554751 Msa0017160:intron 20.0%
!! ATTAATTACAAAGAAATGGT+TGG - chr1_1:28555550-28555569 None:intergenic 20.0%
!! TCTCATTAATTACAAAGAAA+TGG - chr1_1:28555554-28555573 None:intergenic 20.0%
!! CAATACAATAGAATACAAAA+TGG - chr1_1:28555885-28555904 None:intergenic 20.0%
!! TTCTATTGTATTGTATACAT+TGG + chr1_1:28555892-28555911 Msa0017160:three_prime_UTR 20.0%
!!! TTAAGTTTTTACAACTCTAT+TGG + chr1_1:28555955-28555974 Msa0017160:three_prime_UTR 20.0%
!! CATGATCTTTATTTACTTTC+AGG + chr1_1:28548877-28548896 Msa0017160:intron 25.0%
! ATGTAATCTTAGAGTTATGA+TGG - chr1_1:28549036-28549055 None:intergenic 25.0%
!!! CGATCAAATAAGTCATTTTA+TGG - chr1_1:28549101-28549120 None:intergenic 25.0%
!! GTTAATCTACTTTATTTCCT+TGG - chr1_1:28549252-28549271 None:intergenic 25.0%
!! AAAGGGTATGCATAAATTTA+AGG - chr1_1:28549315-28549334 None:intergenic 25.0%
! TTTAATATCTATGCCTTAGA+GGG + chr1_1:28549472-28549491 Msa0017160:intron 25.0%
! ACAATGCATAAAAATATGCA+AGG + chr1_1:28549554-28549573 Msa0017160:intron 25.0%
!!! CTATATTTTGATATCACAAG+GGG - chr1_1:28549625-28549644 None:intergenic 25.0%
!!! CCTATATTTTGATATCACAA+GGG - chr1_1:28549626-28549645 None:intergenic 25.0%
!!! TCCTATATTTTGATATCACA+AGG - chr1_1:28549627-28549646 None:intergenic 25.0%
! TACCATAATTTATATGTACG+TGG + chr1_1:28549656-28549675 Msa0017160:intron 25.0%
! ATCCACGTACATATAAATTA+TGG - chr1_1:28549661-28549680 None:intergenic 25.0%
!!! ACAACACAATTGTTGTTTAA+GGG - chr1_1:28549788-28549807 None:intergenic 25.0%
!!! AACAACACAATTGTTGTTTA+AGG - chr1_1:28549789-28549808 None:intergenic 25.0%
! AAAAGAATTGGAGATAATGT+TGG + chr1_1:28549815-28549834 Msa0017160:intron 25.0%
! TTTCTTGAAGCTTACAAAAA+TGG + chr1_1:28549866-28549885 Msa0017160:intron 25.0%
! TCATTTACCTTACAGATTAT+TGG + chr1_1:28550080-28550099 Msa0017160:intron 25.0%
! TATTTCACCAATAATCTGTA+AGG - chr1_1:28550090-28550109 None:intergenic 25.0%
! AACTAAGATACTCTAATGTA+GGG - chr1_1:28551383-28551402 None:intergenic 25.0%
! ACTCCTAATTCATATCTATA+AGG - chr1_1:28551458-28551477 None:intergenic 25.0%
! TCGAATAGTTTATAAAGGTA+AGG - chr1_1:28551505-28551524 None:intergenic 25.0%
! CATGAACATTTGATATAAGT+GGG + chr1_1:28551548-28551567 Msa0017160:intron 25.0%
! ATGAACATTTGATATAAGTG+GGG + chr1_1:28551549-28551568 Msa0017160:intron 25.0%
! TGAACATGTGTTTATAAGTT+AGG + chr1_1:28551751-28551770 Msa0017160:intron 25.0%
! GAACATGTGTTTATAAGTTA+GGG + chr1_1:28551752-28551771 Msa0017160:intron 25.0%
! AACTATATATAACTACCAAC+AGG - chr1_1:28552294-28552313 None:intergenic 25.0%
!! TTATATATAGTTTGTGCCTT+TGG + chr1_1:28552302-28552321 Msa0017160:intron 25.0%
!! TATATATAGTTTGTGCCTTT+GGG + chr1_1:28552303-28552322 Msa0017160:intron 25.0%
!!! TTTTTTTTTTTGCTTGCAAC+TGG - chr1_1:28552354-28552373 None:intergenic 25.0%
! TATTAATGTATCTCAACTTG+TGG - chr1_1:28552403-28552422 None:intergenic 25.0%
! TAGAAAGAAGCGAAATAAAT+AGG + chr1_1:28552421-28552440 Msa0017160:intron 25.0%
! ATTACTAGTGAATCACAAAA+AGG - chr1_1:28553107-28553126 None:intergenic 25.0%
! GTAATAATGAGGTTAAAACT+TGG + chr1_1:28553122-28553141 Msa0017160:intron 25.0%
! TATATATTCTAACACTCTCA+AGG - chr1_1:28553157-28553176 None:intergenic 25.0%
!! GTTTTCATAAGTTATCTTAG+AGG + chr1_1:28553345-28553364 Msa0017160:intron 25.0%
! GATCAACTTATGTAATTGTT+TGG + chr1_1:28553494-28553513 Msa0017160:intron 25.0%
!! ATCTTTGTTATGATGTATTG+TGG + chr1_1:28553557-28553576 Msa0017160:intron 25.0%
!!! TAAGTTTTTCTGTATTGACA+TGG + chr1_1:28553649-28553668 Msa0017160:intron 25.0%
!!! GTTGTTTCCGTTTTATTTTT+AGG + chr1_1:28553751-28553770 Msa0017160:intron 25.0%
! TCCTAAACACTGAATATAAA+GGG - chr1_1:28553859-28553878 None:intergenic 25.0%
! TTCCTAAACACTGAATATAA+AGG - chr1_1:28553860-28553879 None:intergenic 25.0%
! TTGATAAATTTGATGAGCAA+CGG + chr1_1:28553930-28553949 Msa0017160:intron 25.0%
!! ATTGTTTTCTACTAACAGAA+TGG - chr1_1:28553969-28553988 None:intergenic 25.0%
!! CAAATAACATCTTTAAAAGG+GGG + chr1_1:28554070-28554089 Msa0017160:intron 25.0%
! CTTGTAAATTAACAACGTAA+AGG + chr1_1:28554220-28554239 Msa0017160:intron 25.0%
! TTGTATAAAATATCAAACGC+TGG - chr1_1:28554250-28554269 None:intergenic 25.0%
! ACAGAAATATTAGTATCCAT+TGG + chr1_1:28554290-28554309 Msa0017160:intron 25.0%
! TGAATAAAACAGATTACCAA+TGG - chr1_1:28554309-28554328 None:intergenic 25.0%
! TAGATTTGATGTCTCAAAAT+TGG + chr1_1:28554375-28554394 Msa0017160:CDS 25.0%
! TGAAGTAATTACATTAGTTG+AGG - chr1_1:28554483-28554502 None:intergenic 25.0%
! AAAATTGACAGAGTATACAT+AGG + chr1_1:28554560-28554579 Msa0017160:CDS 25.0%
! ATACTGATAGATATGCAAAT+GGG - chr1_1:28554663-28554682 None:intergenic 25.0%
!! TGAAATTTTTCCTATGCTTA+TGG + chr1_1:28554948-28554967 Msa0017160:intron 25.0%
!! ATATCATGTTTTTCATTAGC+GGG - chr1_1:28555014-28555033 None:intergenic 25.0%
!! GATATCATGTTTTTCATTAG+CGG - chr1_1:28555015-28555034 None:intergenic 25.0%
! AACATGATATCTATATTTGC+AGG + chr1_1:28555024-28555043 Msa0017160:intron 25.0%
! ACATGATATCTATATTTGCA+GGG + chr1_1:28555025-28555044 Msa0017160:intron 25.0%
! TTTGTAATTAATGAGAACTG+TGG + chr1_1:28555558-28555577 Msa0017160:intron 25.0%
!!! AATAGCTTAAGTTCTAAGTT+TGG - chr1_1:28555937-28555956 None:intergenic 25.0%
!!! TACTTTATGAGAGTATCATA+TGG + chr1_1:28556058-28556077 Msa0017160:three_prime_UTR 25.0%
! ATAACAATTGAAGATGACAA+AGG - chr1_1:28556094-28556113 None:intergenic 25.0%
TAAATCATGTGATTCATAGG+AGG + chr1_1:28548159-28548178 Msa0017160:five_prime_UTR 30.0%
AAATCATGTGATTCATAGGA+GGG + chr1_1:28548160-28548179 Msa0017160:five_prime_UTR 30.0%
TCTCAGCATTATAGCATATA+CGG - chr1_1:28548221-28548240 None:intergenic 30.0%
ACTTGTGAATATATAGTGGT+CGG - chr1_1:28548316-28548335 None:intergenic 30.0%
CATCACTTGTGAATATATAG+TGG - chr1_1:28548320-28548339 None:intergenic 30.0%
! TCTTAGAGTTATGATGGAAA+AGG - chr1_1:28549030-28549049 None:intergenic 30.0%
! AAGGTTTTCAATTGAGCATT+AGG + chr1_1:28549344-28549363 Msa0017160:intron 30.0%
TATCTACAACCAATAGTTGT+TGG + chr1_1:28549398-28549417 Msa0017160:intron 30.0%
GTTTAATATCTATGCCTTAG+AGG + chr1_1:28549471-28549490 Msa0017160:intron 30.0%
CCCTTGTGATATCAAAATAT+AGG + chr1_1:28549623-28549642 Msa0017160:intron 30.0%
!! ATTGTTGTTTAAGGGTAAAG+CGG - chr1_1:28549780-28549799 None:intergenic 30.0%
! ACAACAATTGTGTTGTTATG+TGG + chr1_1:28549792-28549811 Msa0017160:intron 30.0%
GTTGTTATGTGGAAAAGAAT+TGG + chr1_1:28549803-28549822 Msa0017160:intron 30.0%
CTTATATCCCATATTAATGC+AGG + chr1_1:28549909-28549928 Msa0017160:intron 30.0%
ATTACAAATCTCAAAGTTGG+AGG - chr1_1:28549937-28549956 None:intergenic 30.0%
!! TCCAACTTTGAGATTTGTAA+TGG + chr1_1:28549936-28549955 Msa0017160:exon 30.0%
TCCATTACAAATCTCAAAGT+TGG - chr1_1:28549940-28549959 None:intergenic 30.0%
!! ACTTTGAGATTTGTAATGGA+TGG + chr1_1:28549940-28549959 Msa0017160:exon 30.0%
AAACAAGCTAACTAAAATCC+AGG - chr1_1:28550017-28550036 None:intergenic 30.0%
GTTTGCATACATTAGCAATA+TGG + chr1_1:28550033-28550052 Msa0017160:intron 30.0%
GATTATTGGTGAAATAAGTG+TGG + chr1_1:28550094-28550113 Msa0017160:intron 30.0%
TACAAATCAATGGAGTTTGT+TGG + chr1_1:28550128-28550147 Msa0017160:CDS 30.0%
!! TTTTGATAACTTGTCCCTTT+TGG + chr1_1:28550259-28550278 Msa0017160:intron 30.0%
TTATATGTAATGCTATCTGG+AGG - chr1_1:28550352-28550371 None:intergenic 30.0%
TTTCTGTCCATTACTATCTA+CGG - chr1_1:28550557-28550576 None:intergenic 30.0%
TAATAGAAATGGTAGGAAAG+TGG + chr1_1:28550625-28550644 Msa0017160:intron 30.0%
! TGCAAAGGAGTTATTTCATT+TGG - chr1_1:28550793-28550812 None:intergenic 30.0%
ACATTGACGTTTCTCTTATA+TGG + chr1_1:28550855-28550874 Msa0017160:intron 30.0%
CATTGACGTTTCTCTTATAT+GGG + chr1_1:28550856-28550875 Msa0017160:intron 30.0%
TGAAATTAAGGAATACTGGT+TGG + chr1_1:28551019-28551038 Msa0017160:intron 30.0%
CAAAATGCTGTCATTAGATA+AGG + chr1_1:28551161-28551180 Msa0017160:intron 30.0%
GTACAAAATATGTCAGTGTT+TGG + chr1_1:28551198-28551217 Msa0017160:intron 30.0%
AAAATATGTCAGTGTTTGGT+TGG + chr1_1:28551202-28551221 Msa0017160:intron 30.0%
AAATATGTCAGTGTTTGGTT+GGG + chr1_1:28551203-28551222 Msa0017160:intron 30.0%
TGATAGAGAAATAACATGAC+CGG - chr1_1:28551329-28551348 None:intergenic 30.0%
!! GTTATTTCTCTATCAGGTTT+CGG + chr1_1:28551334-28551353 Msa0017160:intron 30.0%
! TTATTTCTCTATCAGGTTTC+GGG + chr1_1:28551335-28551354 Msa0017160:intron 30.0%
CAACTAAGATACTCTAATGT+AGG - chr1_1:28551384-28551403 None:intergenic 30.0%
GCATGAACATTTGATATAAG+TGG + chr1_1:28551547-28551566 Msa0017160:intron 30.0%
TGAACATTTGATATAAGTGG+GGG + chr1_1:28551550-28551569 Msa0017160:intron 30.0%
!! AAAGCTCATCATATTTTTGC+AGG - chr1_1:28551914-28551933 None:intergenic 30.0%
! CTTTGCATTTTTGTGTTTGA+AGG + chr1_1:28551930-28551949 Msa0017160:intron 30.0%
ATTGTAGACACAGAAAGAAA+TGG - chr1_1:28552025-28552044 None:intergenic 30.0%
TTACCACATCCTATTTATCT+AGG + chr1_1:28552051-28552070 Msa0017160:intron 30.0%
TACCACATCCTATTTATCTA+GGG + chr1_1:28552052-28552071 Msa0017160:intron 30.0%
AAGCCAACTGAAGATAATAA+TGG - chr1_1:28552253-28552272 None:intergenic 30.0%
ATTATTATCTTCAGTTGGCT+TGG + chr1_1:28552252-28552271 Msa0017160:intron 30.0%
AGCAGCTATTTAATGACAAT+GGG - chr1_1:28552472-28552491 None:intergenic 30.0%
TAGCAGCTATTTAATGACAA+TGG - chr1_1:28552473-28552492 None:intergenic 30.0%
ATGTTGTCAAATAGTGACTA+TGG + chr1_1:28552561-28552580 Msa0017160:intron 30.0%
ACTTAATGGTTTACAGATAG+TGG - chr1_1:28552883-28552902 None:intergenic 30.0%
!! TTCCAAATTTATTGGTTCTC+TGG + chr1_1:28552903-28552922 Msa0017160:intron 30.0%
AAAGAGCAAGAAAACATAAG+AGG - chr1_1:28552929-28552948 None:intergenic 30.0%
!! AAGCTTTTAAGTGCTTGTTT+TGG + chr1_1:28552950-28552969 Msa0017160:intron 30.0%
GTGATTCACTAGTAATAATG+AGG + chr1_1:28553111-28553130 Msa0017160:intron 30.0%
! TTTTAGACTATGATCCTGTT+TGG + chr1_1:28553222-28553241 Msa0017160:intron 30.0%
ACTAAGTTGTTTATCCAAAC+AGG - chr1_1:28553239-28553258 None:intergenic 30.0%
GAACTTATCGAAACAGTTTA+TGG - chr1_1:28553408-28553427 None:intergenic 30.0%
TATGAACGCAATATGCAAAA+GGG - chr1_1:28553708-28553727 None:intergenic 30.0%
ATATGAACGCAATATGCAAA+AGG - chr1_1:28553709-28553728 None:intergenic 30.0%
GTCTTGCCCTAAAAATAAAA+CGG - chr1_1:28553761-28553780 None:intergenic 30.0%
!! TCACTATATACTGGTTCATA+TGG - chr1_1:28553791-28553810 None:intergenic 30.0%
CTAAACACTGAATATAAAGG+GGG - chr1_1:28553857-28553876 None:intergenic 30.0%
CCTAAACACTGAATATAAAG+GGG - chr1_1:28553858-28553877 None:intergenic 30.0%
ATTAAGCTCATATGCAACAT+GGG - chr1_1:28554137-28554156 None:intergenic 30.0%
AATTAAGCTCATATGCAACA+TGG - chr1_1:28554138-28554157 None:intergenic 30.0%
AGTATACATAGGATCTTGTA+CGG + chr1_1:28554571-28554590 Msa0017160:CDS 30.0%
TGGAAAAACAGAAGATTTCA+TGG + chr1_1:28554595-28554614 Msa0017160:CDS 30.0%
CATACTGATAGATATGCAAA+TGG - chr1_1:28554664-28554683 None:intergenic 30.0%
! AAAGCAGTATTTTCAATTGG+TGG + chr1_1:28554735-28554754 Msa0017160:intron 30.0%
!!! CCAACTCCAAAATCTTTTTT+CGG - chr1_1:28554925-28554944 None:intergenic 30.0%
CACAAAAAATCCATAAGCAT+AGG - chr1_1:28554961-28554980 None:intergenic 30.0%
TCTATATTTGCAGGGTAAAA+AGG + chr1_1:28555033-28555052 Msa0017160:intron 30.0%
! TGCTTTATTAATGGAACTTC+AGG + chr1_1:28555192-28555211 Msa0017160:intron 30.0%
! TATTAATGGAACTTCAGGTT+TGG + chr1_1:28555197-28555216 Msa0017160:intron 30.0%
!!! ATATATTTTTGGTGTGCTGT+TGG + chr1_1:28555406-28555425 Msa0017160:intron 30.0%
! AAGTGATTGTCATTTCAACT+AGG - chr1_1:28555455-28555474 None:intergenic 30.0%
!!! TGTTGATTTTTCTTGCTGAA+CGG - chr1_1:28555517-28555536 None:intergenic 30.0%
TTTGTCAAATATTCACAAGC+AGG - chr1_1:28555622-28555641 None:intergenic 30.0%
AACCACAAATAGAAACTTTC+CGG + chr1_1:28555742-28555761 Msa0017160:CDS 30.0%
! CTATTGGTATTTCTTTTCAG+TGG + chr1_1:28555971-28555990 Msa0017160:three_prime_UTR 30.0%
AATTGTGCCTGTTAATGAAT+TGG + chr1_1:28555997-28556016 Msa0017160:three_prime_UTR 30.0%
AACTCAACCAATTCATTAAC+AGG - chr1_1:28556007-28556026 None:intergenic 30.0%
CTTGTGAATATATAGTGGTC+GGG - chr1_1:28548315-28548334 None:intergenic 35.0%
CAGGTAAATCCAGATTACAA+AGG + chr1_1:28548533-28548552 Msa0017160:intron 35.0%
TGACAAACACCTTTGTAATC+TGG - chr1_1:28548545-28548564 None:intergenic 35.0%
GCTAATTAGATTCTTTCTGC+AGG + chr1_1:28548684-28548703 Msa0017160:intron 35.0%
CATTTGGTCAATTTGCAACA+GGG + chr1_1:28548746-28548765 Msa0017160:five_prime_UTR 35.0%
TGTTTCACTAAGTTCTACGA+TGG + chr1_1:28548832-28548851 Msa0017160:intron 35.0%
GAGAAAGTAAAGTACAACAG+TGG - chr1_1:28548904-28548923 None:intergenic 35.0%
TTTACTTTCTCAGCATAACC+TGG + chr1_1:28548913-28548932 Msa0017160:intron 35.0%
TGATGGAAAAGGAACAATAG+TGG - chr1_1:28549019-28549038 None:intergenic 35.0%
! TTTTATGGCTGAAAGCTGTT+AGG - chr1_1:28549086-28549105 None:intergenic 35.0%
! CTTTTTGTGAGAGTTATCCA+AGG + chr1_1:28549232-28549251 Msa0017160:intron 35.0%
AAAACCTTCCTAGTTGCAAA+GGG - chr1_1:28549332-28549351 None:intergenic 35.0%
ACCAATAGTTGTTGGACTAT+TGG + chr1_1:28549406-28549425 Msa0017160:intron 35.0%
ACCAATAGTCCAACAACTAT+TGG - chr1_1:28549410-28549429 None:intergenic 35.0%
GCATAAAAATATGCAAGGTC+CGG + chr1_1:28549559-28549578 Msa0017160:intron 35.0%
CATAAAAATATGCAAGGTCC+GGG + chr1_1:28549560-28549579 Msa0017160:intron 35.0%
ATAAAAATATGCAAGGTCCG+GGG + chr1_1:28549561-28549580 Msa0017160:intron 35.0%
!!! TTTTTTTTTTTGGTGGTGGC+CGG - chr1_1:28549595-28549614 None:intergenic 35.0%
TAGTAACACTGGAACAAGAT+TGG + chr1_1:28549680-28549699 Msa0017160:intron 35.0%
!! TTGTTGTTTAAGGGTAAAGC+GGG - chr1_1:28549779-28549798 None:intergenic 35.0%
TACTTGCAGAATCAAATCCT+TGG - chr1_1:28549989-28550008 None:intergenic 35.0%
TGGTGCAACTTACAAATCAA+TGG + chr1_1:28550118-28550137 Msa0017160:CDS 35.0%
AAACGTTGAGAGTTGCATTA+CGG - chr1_1:28550208-28550227 None:intergenic 35.0%
GTTCTTCCATCTATCCAAAA+GGG - chr1_1:28550276-28550295 None:intergenic 35.0%
! CTTTTGGATAGATGGAAGAA+CGG + chr1_1:28550275-28550294 Msa0017160:intron 35.0%
AAACCCCCTACATTAAAGTA+GGG + chr1_1:28550730-28550749 Msa0017160:intron 35.0%
TCTACCCTACTTTAATGTAG+GGG - chr1_1:28550737-28550756 None:intergenic 35.0%
CTCTACCCTACTTTAATGTA+GGG - chr1_1:28550738-28550757 None:intergenic 35.0%
ATTAAAGTAGGGTAGAGCAT+CGG + chr1_1:28550741-28550760 Msa0017160:intron 35.0%
TCAATGTTTAACACTGCCAT+TGG - chr1_1:28550842-28550861 None:intergenic 35.0%
ACGTTTCTCTTATATGGGAT+GGG + chr1_1:28550861-28550880 Msa0017160:intron 35.0%
!! GGATGGGAGATATATTTTGA+TGG + chr1_1:28550877-28550896 Msa0017160:intron 35.0%
!!! TGGGAGATATATTTTGATGG+TGG + chr1_1:28550880-28550899 Msa0017160:intron 35.0%
!!! ATATTTTGATGGTGGCAACT+TGG + chr1_1:28550888-28550907 Msa0017160:intron 35.0%
! ATTTATGCCATGTGCTTTTG+TGG + chr1_1:28551071-28551090 Msa0017160:intron 35.0%
! TTTATGCCATGTGCTTTTGT+GGG + chr1_1:28551072-28551091 Msa0017160:intron 35.0%
!! AATGACGGGTATGAAACTAT+AGG + chr1_1:28551099-28551118 Msa0017160:intron 35.0%
! TTCAAGTTTCAGTCTTGCAT+GGG - chr1_1:28551278-28551297 None:intergenic 35.0%
!! GGTCATGTTATTTCTCTATC+AGG + chr1_1:28551328-28551347 Msa0017160:intron 35.0%
GCGACTCGAATAGTTTATAA+AGG - chr1_1:28551510-28551529 None:intergenic 35.0%
GTTGGATGGATATAAATGGT+GGG - chr1_1:28551667-28551686 None:intergenic 35.0%
TGTTGGATGGATATAAATGG+TGG - chr1_1:28551668-28551687 None:intergenic 35.0%
! GCTTGTTGGATGGATATAAA+TGG - chr1_1:28551671-28551690 None:intergenic 35.0%
!! ATATTTTTGCAGGTAGCACA+TGG - chr1_1:28551904-28551923 None:intergenic 35.0%
AGAGCAGAGATATCTCTAAT+TGG + chr1_1:28551962-28551981 Msa0017160:intron 35.0%
TGAAATCCTCATTCTTTCCA+CGG + chr1_1:28552089-28552108 Msa0017160:intron 35.0%
CAAAGAAGAAAATAGCCGAA+GGG - chr1_1:28552196-28552215 None:intergenic 35.0%
ACAAAGAAGAAAATAGCCGA+AGG - chr1_1:28552197-28552216 None:intergenic 35.0%
! CTTTGTTTGATGCTCATATC+TGG + chr1_1:28552211-28552230 Msa0017160:intron 35.0%
CGTCCATTATTATCTTCAGT+TGG + chr1_1:28552247-28552266 Msa0017160:intron 35.0%
GCTATTTAATGACAATGGGT+TGG - chr1_1:28552468-28552487 None:intergenic 35.0%
TCATTAAATAGCTGCTACAC+CGG + chr1_1:28552476-28552495 Msa0017160:intron 35.0%
TTGTCAAATAGTGACTATGG+TGG + chr1_1:28552564-28552583 Msa0017160:intron 35.0%
GTATAACATGCTGTTGGTAT+AGG - chr1_1:28552688-28552707 None:intergenic 35.0%
!! CACTAGTTTGTTGCTTTGAA+CGG - chr1_1:28552773-28552792 None:intergenic 35.0%
!!! ATGCTGGTTTTTTACTTTGC+TGG + chr1_1:28552977-28552996 Msa0017160:intron 35.0%
GAAAATATAACTCAGCGAGA+CGG - chr1_1:28553044-28553063 None:intergenic 35.0%
! GCTGAGTTATATTTTCAGCT+AGG + chr1_1:28553048-28553067 Msa0017160:intron 35.0%
AAAGGGAAAGCAACATTCAA+GGG - chr1_1:28553691-28553710 None:intergenic 35.0%
AAAAGGGAAAGCAACATTCA+AGG - chr1_1:28553692-28553711 None:intergenic 35.0%
TATTGCGTTCATATCCTACT+CGG + chr1_1:28553715-28553734 Msa0017160:intron 35.0%
CCCCTTTATATTCAGTGTTT+AGG + chr1_1:28553855-28553874 Msa0017160:intron 35.0%
ATAAATTTGATGAGCAACGG+TGG + chr1_1:28553933-28553952 Msa0017160:intron 35.0%
ATCATTGTAAGATGACCCTA+TGG + chr1_1:28554002-28554021 Msa0017160:intron 35.0%
TCATTGTAAGATGACCCTAT+GGG + chr1_1:28554003-28554022 Msa0017160:intron 35.0%
ATAGTCATTATGCTCCCATA+GGG - chr1_1:28554020-28554039 None:intergenic 35.0%
AATAGTCATTATGCTCCCAT+AGG - chr1_1:28554021-28554040 None:intergenic 35.0%
ATATGCAACATGGGAATTCA+AGG - chr1_1:28554128-28554147 None:intergenic 35.0%
CTCAAAGGAAATGCAATCAA+AGG - chr1_1:28554424-28554443 None:intergenic 35.0%
GGTAACAACATATTGCTCAA+AGG - chr1_1:28554439-28554458 None:intergenic 35.0%
GTATACATAGGATCTTGTAC+GGG + chr1_1:28554572-28554591 Msa0017160:CDS 35.0%
!! GTGTTTGTATGGTGGATATT+AGG + chr1_1:28554862-28554881 Msa0017160:intron 35.0%
!! ACAGCACCGAAAAAAGATTT+TGG + chr1_1:28554916-28554935 Msa0017160:intron 35.0%
!!! CCGAAAAAAGATTTTGGAGT+TGG + chr1_1:28554922-28554941 Msa0017160:intron 35.0%
!!! GGATTTTTTGTGCAAATGTC+TGG + chr1_1:28554969-28554988 Msa0017160:intron 35.0%
!! TCACAGATTTTTGAAGAAGC+TGG + chr1_1:28555268-28555287 Msa0017160:intron 35.0%
! GATTGTCATTTCAACTAGGT+TGG - chr1_1:28555451-28555470 None:intergenic 35.0%
ACCACAAATAGAAACTTTCC+GGG + chr1_1:28555743-28555762 Msa0017160:CDS 35.0%
CAGGGAAGGTGAAATATATT+TGG + chr1_1:28555778-28555797 Msa0017160:CDS 35.0%
TCTTGGATCAGTAACATAAC+CGG - chr1_1:28555837-28555856 None:intergenic 35.0%
! CGTTGTTCCTTTGAAGGTTT+GGG + chr1_1:28548266-28548285 Msa0017160:five_prime_UTR 40.0%
GAGTATGTCAACATTGCGAT+TGG - chr1_1:28548349-28548368 None:intergenic 40.0%
AGTACTTGATATCTTGCTCG+TGG - chr1_1:28548383-28548402 None:intergenic 40.0%
TGCACATTGAATGCTAATGC+AGG + chr1_1:28548514-28548533 Msa0017160:intron 40.0%
TAAACTAATCGAACCTCTCC+TGG - chr1_1:28548599-28548618 None:intergenic 40.0%
ATTCTTTCTGCAGGTTCTCT+TGG + chr1_1:28548693-28548712 Msa0017160:intron 40.0%
TTCTTTCTGCAGGTTCTCTT+GGG + chr1_1:28548694-28548713 Msa0017160:intron 40.0%
GCATTTGGTCAATTTGCAAC+AGG + chr1_1:28548745-28548764 Msa0017160:five_prime_UTR 40.0%
GATATAGGAACTCTGAGCAA+TGG - chr1_1:28548858-28548877 None:intergenic 40.0%
TATGCATACCCTTTGCAACT+AGG + chr1_1:28549321-28549340 Msa0017160:intron 40.0%
GAAAACCTTCCTAGTTGCAA+AGG - chr1_1:28549333-28549352 None:intergenic 40.0%
! TTGTTGGACTATTGGTCTAG+TGG + chr1_1:28549414-28549433 Msa0017160:intron 40.0%
TAAGTTCACAAGGACACAAG+GGG - chr1_1:28549519-28549538 None:intergenic 40.0%
CTAAGTTCACAAGGACACAA+GGG - chr1_1:28549520-28549539 None:intergenic 40.0%
! TGAACTTAGCTCAGTTGGTA+TGG + chr1_1:28549531-28549550 Msa0017160:intron 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG - chr1_1:28549594-28549613 None:intergenic 40.0%
ATGTACGTGGATAGTAACAC+TGG + chr1_1:28549669-28549688 Msa0017160:intron 40.0%
TGACTTGAATAACTCCCCAT+TGG + chr1_1:28549728-28549747 Msa0017160:intron 40.0%
AGATGAGATCACACTCCAAT+GGG - chr1_1:28549746-28549765 None:intergenic 40.0%
TCCTTGGCAAGCAAATAACT+TGG - chr1_1:28549973-28549992 None:intergenic 40.0%
ATTGGTGAAATAAGTGTGGC+TGG + chr1_1:28550098-28550117 Msa0017160:CDS 40.0%
! ACTTGTCCCTTTTGGATAGA+TGG + chr1_1:28550267-28550286 Msa0017160:intron 40.0%
CGTTCTTCCATCTATCCAAA+AGG - chr1_1:28550277-28550296 None:intergenic 40.0%
AATGGACAGAAACAGAACTG+TGG + chr1_1:28550565-28550584 Msa0017160:intron 40.0%
TGTGGACTTTGTTCTGTGTT+TGG + chr1_1:28550583-28550602 Msa0017160:intron 40.0%
!! ACATGTTGGTTCCATCAAGA+AGG + chr1_1:28550649-28550668 Msa0017160:intron 40.0%
!! CATGTTGGTTCCATCAAGAA+GGG + chr1_1:28550650-28550669 Msa0017160:intron 40.0%
GGTTTGGCATGAAGACAAAA+CGG - chr1_1:28550715-28550734 None:intergenic 40.0%
CTACTTTAATGTAGGGGGTT+TGG - chr1_1:28550731-28550750 None:intergenic 40.0%
CAAACCCCCTACATTAAAGT+AGG + chr1_1:28550729-28550748 Msa0017160:intron 40.0%
CTACCCTACTTTAATGTAGG+GGG - chr1_1:28550736-28550755 None:intergenic 40.0%
GCTCTACCCTACTTTAATGT+AGG - chr1_1:28550739-28550758 None:intergenic 40.0%
! TTAAAGTAGGGTAGAGCATC+GGG + chr1_1:28550742-28550761 Msa0017160:intron 40.0%
AGTTTCACAGTATGGACCAA+TGG + chr1_1:28550823-28550842 Msa0017160:intron 40.0%
GACGTTTCTCTTATATGGGA+TGG + chr1_1:28550860-28550879 Msa0017160:intron 40.0%
AGTCTTGCATGGGTACTAAT+GGG - chr1_1:28551268-28551287 None:intergenic 40.0%
! GTTCAAGTTTCAGTCTTGCA+TGG - chr1_1:28551279-28551298 None:intergenic 40.0%
AGGTAAGGAGTGAATAGAGT+CGG - chr1_1:28551490-28551509 None:intergenic 40.0%
TACTATCACGTTTCCGCTAT+CGG + chr1_1:28551640-28551659 Msa0017160:intron 40.0%
AGTCATCTCTCATGCAATGT+GGG - chr1_1:28551731-28551750 None:intergenic 40.0%
AAGTCATCTCTCATGCAATG+TGG - chr1_1:28551732-28551751 None:intergenic 40.0%
CAAAACAGGTTTGTGAGATG+AGG - chr1_1:28551782-28551801 None:intergenic 40.0%
TTAGAGATATCTCTGCTCTC+TGG - chr1_1:28551961-28551980 None:intergenic 40.0%
CACCCTAGATAAATAGGATG+TGG - chr1_1:28552057-28552076 None:intergenic 40.0%
! TCCTATTTATCTAGGGTGTG+TGG + chr1_1:28552059-28552078 Msa0017160:intron 40.0%
! CCTATTTATCTAGGGTGTGT+GGG + chr1_1:28552060-28552079 Msa0017160:intron 40.0%
TACACCTCAACATGTCTGTT+TGG + chr1_1:28552169-28552188 Msa0017160:intron 40.0%
GTTTGATGCTCATATCTGGT+AGG + chr1_1:28552215-28552234 Msa0017160:intron 40.0%
!! TTTGTGCCTTTGGGATTTGT+TGG + chr1_1:28552312-28552331 Msa0017160:intron 40.0%
!! TTGTGCCTTTGGGATTTGTT+GGG + chr1_1:28552313-28552332 Msa0017160:intron 40.0%
!! TGGATTAGTGTTGTTGATCG+CGG - chr1_1:28552643-28552662 None:intergenic 40.0%
CGTTCAAAGCAACAAACTAG+TGG + chr1_1:28552771-28552790 Msa0017160:intron 40.0%
ATGAGAAGAGAAGTCACTAC+TGG - chr1_1:28552854-28552873 None:intergenic 40.0%
GGCCAGAGAACCAATAAATT+TGG - chr1_1:28552908-28552927 None:intergenic 40.0%
!!! TGCTTGTTTTGGAGAAATGC+TGG + chr1_1:28552961-28552980 Msa0017160:intron 40.0%
TGGATTGCTTGCCTAGAATT+TGG + chr1_1:28552997-28553016 Msa0017160:intron 40.0%
CAAATCAAGCCAATCCAAAC+AGG + chr1_1:28553451-28553470 Msa0017160:intron 40.0%
AGTTGATCACTATGCCATTG+AGG - chr1_1:28553482-28553501 None:intergenic 40.0%
TTAATCTTGCCTGCTGAACA+TGG + chr1_1:28553619-28553638 Msa0017160:intron 40.0%
TATATAGTGACCAGCAAGCA+AGG + chr1_1:28553801-28553820 Msa0017160:CDS 40.0%
TGCAATCAAAGGACTAACCT+TGG - chr1_1:28554413-28554432 None:intergenic 40.0%
TATGTTGTTACCGTCTGACA+CGG + chr1_1:28554447-28554466 Msa0017160:intron 40.0%
!! GTATTTTCAATTGGTGGCCA+CGG + chr1_1:28554741-28554760 Msa0017160:intron 40.0%
ATCCCTTTACAAGTTGCCTA+TGG - chr1_1:28554809-28554828 None:intergenic 40.0%
TTGTAAAGGGATGCCTTCTA+TGG + chr1_1:28554817-28554836 Msa0017160:intron 40.0%
GAAGGCAAAAATATGGCAGA+AGG - chr1_1:28554888-28554907 None:intergenic 40.0%
GATGGCAGAAGGCAAAAATA+TGG - chr1_1:28554895-28554914 None:intergenic 40.0%
!!! TCTTTTTTCGGTGCTGTTGA+TGG - chr1_1:28554913-28554932 None:intergenic 40.0%
! AATGGAACTTCAGGTTTGGA+TGG + chr1_1:28555201-28555220 Msa0017160:intron 40.0%
! TGCGGGCATAAGTATCTTTT+GGG - chr1_1:28555339-28555358 None:intergenic 40.0%
! ATGCGGGCATAAGTATCTTT+TGG - chr1_1:28555340-28555359 None:intergenic 40.0%
!!! TGTTGGCTTTTTTGTGGTTG+TGG + chr1_1:28555423-28555442 Msa0017160:intron 40.0%
CTTGCTGAACGGTTCAATAA+GGG - chr1_1:28555506-28555525 None:intergenic 40.0%
TCTTGCTGAACGGTTCAATA+AGG - chr1_1:28555507-28555526 None:intergenic 40.0%
TACTTCCATTGCTGATGTGT+TGG + chr1_1:28555700-28555719 Msa0017160:intron 40.0%
AACAACCAACACATCAGCAA+TGG - chr1_1:28555708-28555727 None:intergenic 40.0%
CCACAAATAGAAACTTTCCG+GGG + chr1_1:28555744-28555763 Msa0017160:CDS 40.0%
!! AGGAGGGTTGTAGTTTTGCT+AGG + chr1_1:28548176-28548195 Msa0017160:five_prime_UTR 45.0%
TGACTGCGTTGTTCCTTTGA+AGG + chr1_1:28548260-28548279 Msa0017160:five_prime_UTR 45.0%
! GCGTTGTTCCTTTGAAGGTT+TGG + chr1_1:28548265-28548284 Msa0017160:five_prime_UTR 45.0%
TCACGATCCCAAACCTTCAA+AGG - chr1_1:28548276-28548295 None:intergenic 45.0%
! GAAGGTTTGGGATCGTGAAA+AGG + chr1_1:28548278-28548297 Msa0017160:five_prime_UTR 45.0%
GATTCTCACACTTGTACTGC+TGG + chr1_1:28548721-28548740 Msa0017160:five_prime_UTR 45.0%
! ACTTGTACTGCTGGAGCATT+TGG + chr1_1:28548730-28548749 Msa0017160:five_prime_UTR 45.0%
GGTCAATTTGCAACAGGGAT+TGG + chr1_1:28548751-28548770 Msa0017160:five_prime_UTR 45.0%
! GGGATTGGTAATACTGATGC+CGG + chr1_1:28548766-28548785 Msa0017160:five_prime_UTR 45.0%
!!! TACTGATGCCGGTTTTGTGT+TGG + chr1_1:28548777-28548796 Msa0017160:five_prime_UTR 45.0%
!!! ACTGATGCCGGTTTTGTGTT+GGG + chr1_1:28548778-28548797 Msa0017160:five_prime_UTR 45.0%
! TGCAGGGAAGCTTTTGCTTA+AGG + chr1_1:28548801-28548820 Msa0017160:five_prime_UTR 45.0%
TCATCACATCCAACTGACAC+AGG + chr1_1:28549207-28549226 Msa0017160:intron 45.0%
CATCACATCCAACTGACACA+GGG + chr1_1:28549208-28549227 Msa0017160:intron 45.0%
CAAAAAGTCCCTGTGTCAGT+TGG - chr1_1:28549219-28549238 None:intergenic 45.0%
CATACCCTTTGCAACTAGGA+AGG + chr1_1:28549325-28549344 Msa0017160:intron 45.0%
GCTAAGTTCACAAGGACACA+AGG - chr1_1:28549521-28549540 None:intergenic 45.0%
CCAACTGAGCTAAGTTCACA+AGG - chr1_1:28549529-28549548 None:intergenic 45.0%
CCTTGTGAACTTAGCTCAGT+TGG + chr1_1:28549526-28549545 Msa0017160:intron 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG - chr1_1:28549593-28549612 None:intergenic 45.0%
GATGAGATCACACTCCAATG+GGG - chr1_1:28549745-28549764 None:intergenic 45.0%
CAGATGAGATCACACTCCAA+TGG - chr1_1:28549747-28549766 None:intergenic 45.0%
!! GGAGGCACCTGCATTAATAT+GGG - chr1_1:28549919-28549938 None:intergenic 45.0%
!! TGGAGGCACCTGCATTAATA+TGG - chr1_1:28549920-28549939 None:intergenic 45.0%
GCCAAGTTATTTGCTTGCCA+AGG + chr1_1:28549969-28549988 Msa0017160:CDS 45.0%
GATTCTGCAAGTAAGTGTCC+TGG + chr1_1:28549996-28550015 Msa0017160:intron 45.0%
ACGGATGACATTGTGCAACA+TGG + chr1_1:28550294-28550313 Msa0017160:CDS 45.0%
TGCAACATGGTTGTTGAAGC+TGG + chr1_1:28550307-28550326 Msa0017160:CDS 45.0%
AACATGGTTGTTGAAGCTGG+AGG + chr1_1:28550310-28550329 Msa0017160:CDS 45.0%
GTTGAAGCTGGAGGAAAGAA+TGG + chr1_1:28550319-28550338 Msa0017160:CDS 45.0%
CAGCGTTCCGTAGATAGTAA+TGG + chr1_1:28550547-28550566 Msa0017160:intron 45.0%
GGTAGGAAAGTGGTACATGT+TGG + chr1_1:28550635-28550654 Msa0017160:intron 45.0%
! TTTGGTTCCACCCTTCTTGA+TGG - chr1_1:28550663-28550682 None:intergenic 45.0%
! CTGATTTGTGACGCTCTCTT+TGG - chr1_1:28550681-28550700 None:intergenic 45.0%
!! CAAAGAGAGCGTCACAAATC+AGG + chr1_1:28550679-28550698 Msa0017160:intron 45.0%
GGCATGAAGACAAAACGGAA+AGG - chr1_1:28550710-28550729 None:intergenic 45.0%
!! AAACTCTGCACTGACTGCAA+AGG - chr1_1:28550808-28550827 None:intergenic 45.0%
CAGTGCAGAGTTTCACAGTA+TGG + chr1_1:28550815-28550834 Msa0017160:intron 45.0%
!! GGCAACTTGGAGTTTTATCG+CGG + chr1_1:28550901-28550920 Msa0017160:intron 45.0%
! TTGAGACCCACAAAAGCACA+TGG - chr1_1:28551081-28551100 None:intergenic 45.0%
! GCTTTTGTGGGTCTCAATGA+CGG + chr1_1:28551084-28551103 Msa0017160:intron 45.0%
! CTTTTGTGGGTCTCAATGAC+GGG + chr1_1:28551085-28551104 Msa0017160:intron 45.0%
CAGTCTTGCATGGGTACTAA+TGG - chr1_1:28551269-28551288 None:intergenic 45.0%
GGTCAGGTTCAAATGTTTGC+GGG - chr1_1:28551308-28551327 None:intergenic 45.0%
CGGTCAGGTTCAAATGTTTG+CGG - chr1_1:28551309-28551328 None:intergenic 45.0%
CGCAAACATTTGAACCTGAC+CGG + chr1_1:28551307-28551326 Msa0017160:intron 45.0%
GAGAAATAACATGACCGGTC+AGG - chr1_1:28551324-28551343 None:intergenic 45.0%
TTTCTCTATCAGGTTTCGGG+CGG + chr1_1:28551338-28551357 Msa0017160:intron 45.0%
GCAATCTTCATCTCACAAGC+CGG + chr1_1:28551572-28551591 Msa0017160:intron 45.0%
CAATCTTCATCTCACAAGCC+GGG + chr1_1:28551573-28551592 Msa0017160:intron 45.0%
!! GATAGCGGAAACGTGATAGT+AGG - chr1_1:28551641-28551660 None:intergenic 45.0%
!! ATAAATGGTGGGTCCGATAG+CGG - chr1_1:28551656-28551675 None:intergenic 45.0%
!! ACACTATTGGGCTTGTTGGA+TGG - chr1_1:28551681-28551700 None:intergenic 45.0%
TCCAACAAGCCCAATAGTGT+TGG + chr1_1:28551681-28551700 Msa0017160:intron 45.0%
CCAACAAGCCCAATAGTGTT+GGG + chr1_1:28551682-28551701 Msa0017160:intron 45.0%
! TCTCACAAACCTGTTTTGCG+AGG + chr1_1:28551784-28551803 Msa0017160:intron 45.0%
ACTACACAACCTCGCAAAAC+AGG - chr1_1:28551796-28551815 None:intergenic 45.0%
! TAAAGTGGTGGTGCACTTTC+AGG - chr1_1:28551867-28551886 None:intergenic 45.0%
GCATGTTGAAGCTAAAGTGG+TGG - chr1_1:28551879-28551898 None:intergenic 45.0%
GTGGCATGTTGAAGCTAAAG+TGG - chr1_1:28551882-28551901 None:intergenic 45.0%
! TTTTTGCAGGTAGCACATGG+TGG - chr1_1:28551901-28551920 None:intergenic 45.0%
CTCAAGAAACTGAGGGCAAA+TGG - chr1_1:28551999-28552018 None:intergenic 45.0%
ATGGTCGCTCAAGAAACTGA+GGG - chr1_1:28552006-28552025 None:intergenic 45.0%
AATGGTCGCTCAAGAAACTG+AGG - chr1_1:28552007-28552026 None:intergenic 45.0%
CCCACACACCCTAGATAAAT+AGG - chr1_1:28552063-28552082 None:intergenic 45.0%
TTGTGACCGTGGAAAGAATG+AGG - chr1_1:28552098-28552117 None:intergenic 45.0%
AACGCAAACAATTGTGACCG+TGG - chr1_1:28552109-28552128 None:intergenic 45.0%
CATGTTGAGGTGTAGAACAG+TGG - chr1_1:28552163-28552182 None:intergenic 45.0%
ACATGTCTGTTTGGTCCCTT+CGG + chr1_1:28552178-28552197 Msa0017160:intron 45.0%
CTGATTCTTGACACTCCTGT+TGG + chr1_1:28552276-28552295 Msa0017160:intron 45.0%
AAACGCCCAACAAATCCCAA+AGG - chr1_1:28552321-28552340 None:intergenic 45.0%
!! GGATTTGTTGGGCGTTTCTT+TGG + chr1_1:28552324-28552343 Msa0017160:intron 45.0%
GGGTTGGATGTTAGTTGTCT+GGG - chr1_1:28552452-28552471 None:intergenic 45.0%
! TGGGTTGGATGTTAGTTGTC+TGG - chr1_1:28552453-28552472 None:intergenic 45.0%
GAGCGTGTATAACATGCTGT+TGG - chr1_1:28552694-28552713 None:intergenic 45.0%
TCACCCATTGAGAAAACCAG+AGG + chr1_1:28552739-28552758 Msa0017160:intron 45.0%
!!! GTGCCTCTGGTTTTCTCAAT+GGG - chr1_1:28552745-28552764 None:intergenic 45.0%
!!! TGTGCCTCTGGTTTTCTCAA+TGG - chr1_1:28552746-28552765 None:intergenic 45.0%
TGCTTGCCTAGAATTTGGTC+AGG + chr1_1:28553002-28553021 Msa0017160:intron 45.0%
CATCAGCCTGACCAAATTCT+AGG - chr1_1:28553011-28553030 None:intergenic 45.0%
TATGAGATGCCATGTTCAGC+AGG - chr1_1:28553631-28553650 None:intergenic 45.0%
! CATTAAAAGCAGTGCCGAGT+AGG - chr1_1:28553732-28553751 None:intergenic 45.0%
! GCTTGCTGGTCACTATATAC+TGG - chr1_1:28553800-28553819 None:intergenic 45.0%
ACTTTGTCTACCTTGCTTGC+TGG - chr1_1:28553814-28553833 None:intergenic 45.0%
TGTCTCAAAATTGGAGCCAC+TGG + chr1_1:28554384-28554403 Msa0017160:CDS 45.0%
AACATAGTGACCGTGTCAGA+CGG - chr1_1:28554460-28554479 None:intergenic 45.0%
TTCACCAGATAACCGTGCTT+TGG + chr1_1:28554517-28554536 Msa0017160:CDS 45.0%
TACATAGGATCTTGTACGGG+TGG + chr1_1:28554575-28554594 Msa0017160:CDS 45.0%
!! GATTTTTCGACAACCGCCAT+AGG + chr1_1:28554790-28554809 Msa0017160:intron 45.0%
CCTTTACAAGTTGCCTATGG+CGG - chr1_1:28554806-28554825 None:intergenic 45.0%
CGCCATAGGCAACTTGTAAA+GGG + chr1_1:28554804-28554823 Msa0017160:intron 45.0%
TAAAGGGATGCCTTCTATGG+TGG + chr1_1:28554820-28554839 Msa0017160:intron 45.0%
ACCATACAAACACGCCATTG+GGG - chr1_1:28554855-28554874 None:intergenic 45.0%
CACCATACAAACACGCCATT+GGG - chr1_1:28554856-28554875 None:intergenic 45.0%
GTTGCAGGGACAAGAAATGT+GGG - chr1_1:28555067-28555086 None:intergenic 45.0%
TGTTGCAGGGACAAGAAATG+TGG - chr1_1:28555068-28555087 None:intergenic 45.0%
AAGTCTTACCACCAGATCCA+GGG - chr1_1:28555246-28555265 None:intergenic 45.0%
! ATCTTTTGGGCCACCTAAAC+AGG - chr1_1:28555326-28555345 None:intergenic 45.0%
TTGCCTGAGGTTCATTCATG+CGG - chr1_1:28555357-28555376 None:intergenic 45.0%
AAGATGCTGGGAAAGAAGCT+GGG - chr1_1:28555383-28555402 None:intergenic 45.0%
AAAGATGCTGGGAAAGAAGC+TGG - chr1_1:28555384-28555403 None:intergenic 45.0%
!!! GTGTGCTGTTGGCTTTTTTG+TGG + chr1_1:28555417-28555436 Msa0017160:intron 45.0%
GCCGTTCTTAATGTCTCACT+CGG + chr1_1:28555582-28555601 Msa0017160:intron 45.0%
GCCGAGTGAGACATTAAGAA+CGG - chr1_1:28555586-28555605 None:intergenic 45.0%
!! TGCTGATGTGTTGGTTGTTC+AGG + chr1_1:28555709-28555728 Msa0017160:intron 45.0%
CCCCGGAAAGTTTCTATTTG+TGG - chr1_1:28555747-28555766 None:intergenic 45.0%
GCTTACTGCAAGAACTCTCT+TGG - chr1_1:28555854-28555873 None:intergenic 45.0%
!! TATAATAATAATTGAAATTA+AGG + chr1_1:28551007-28551026 Msa0017160:intron 5.0%
TTGTCACATCGCTCTTGCTC+AGG + chr1_1:28548559-28548578 Msa0017160:five_prime_UTR 50.0%
TTGCTCAGGAAGGACATTGC+AGG + chr1_1:28548573-28548592 Msa0017160:five_prime_UTR 50.0%
ACCTGGCTTCTTGTGAACAC+TGG + chr1_1:28548930-28548949 Msa0017160:intron 50.0%
ACCAGTGTTCACAAGAAGCC+AGG - chr1_1:28548934-28548953 None:intergenic 50.0%
AATGCACGCAGAACCCTCTA+AGG - chr1_1:28549488-28549507 None:intergenic 50.0%
! GTTGGTTCCATCAAGAAGGG+TGG + chr1_1:28550653-28550672 Msa0017160:intron 50.0%
TGTCAGTGTTTGGTTGGGCT+TGG + chr1_1:28551208-28551227 Msa0017160:intron 50.0%
! TGGGTACTAATGGGTGGATG+TGG - chr1_1:28551259-28551278 None:intergenic 50.0%
CTTGCATGGGTACTAATGGG+TGG - chr1_1:28551265-28551284 None:intergenic 50.0%
TTCTCTATCAGGTTTCGGGC+GGG + chr1_1:28551339-28551358 Msa0017160:intron 50.0%
GTCGCACATTGCATGAGAGA+TGG + chr1_1:28551525-28551544 Msa0017160:intron 50.0%
TGTTGGGGTGAACACAAACC+CGG - chr1_1:28551594-28551613 None:intergenic 50.0%
AGCGGAAACGTGATAGTAGG+TGG - chr1_1:28551638-28551657 None:intergenic 50.0%
CCCAACACTATTGGGCTTGT+TGG - chr1_1:28551685-28551704 None:intergenic 50.0%
GTGGGGCTGAACAAAAGAGA+TGG - chr1_1:28552138-28552157 None:intergenic 50.0%
AGGTGTAGAACAGTGGTGGT+GGG - chr1_1:28552156-28552175 None:intergenic 50.0%
GTTGAGGTGTAGAACAGTGG+TGG - chr1_1:28552160-28552179 None:intergenic 50.0%
GGGACCAAACAGACATGTTG+AGG - chr1_1:28552176-28552195 None:intergenic 50.0%
AATCCACTACGCTATAGCGC+CGG - chr1_1:28552498-28552517 None:intergenic 50.0%
! GTGTTGTTGATCGCGGATTG+TGG - chr1_1:28552636-28552655 None:intergenic 50.0%
ACATATGTGCGTCGTGAGGT+TGG - chr1_1:28552663-28552682 None:intergenic 50.0%
GGTAACATATGTGCGTCGTG+AGG - chr1_1:28552667-28552686 None:intergenic 50.0%
ACAGCGGTAGTCTGAGGAAA+GGG - chr1_1:28552803-28552822 None:intergenic 50.0%
TACAGCGGTAGTCTGAGGAA+AGG - chr1_1:28552804-28552823 None:intergenic 50.0%
GTGAGAGATCACCACTACAG+CGG - chr1_1:28552819-28552838 None:intergenic 50.0%
GAGGTAGAGCCTGTTTGGAT+TGG - chr1_1:28553463-28553482 None:intergenic 50.0%
CCATTGAGGTAGAGCCTGTT+TGG - chr1_1:28553468-28553487 None:intergenic 50.0%
CCAAACAGGCTCTACCTCAA+TGG + chr1_1:28553465-28553484 Msa0017160:intron 50.0%
GCACGGTTATCTGGTGAATG+AGG - chr1_1:28554515-28554534 None:intergenic 50.0%
CTTGCCAAAGCACGGTTATC+TGG - chr1_1:28554524-28554543 None:intergenic 50.0%
TGCACTCTCTTGCCAAAGCA+CGG - chr1_1:28554532-28554551 None:intergenic 50.0%
! TGCTTTGGCAAGAGAGTGCA+AGG + chr1_1:28554532-28554551 Msa0017160:CDS 50.0%
CCGCCATAGGCAACTTGTAA+AGG + chr1_1:28554803-28554822 Msa0017160:intron 50.0%
!! GTCTATGGTGCCACCATAGA+AGG - chr1_1:28554833-28554852 None:intergenic 50.0%
AAACACGCCATTGGGGTCTA+TGG - chr1_1:28554848-28554867 None:intergenic 50.0%
ACCCCAATGGCGTGTTTGTA+TGG + chr1_1:28554851-28554870 Msa0017160:intron 50.0%
CCACCATACAAACACGCCAT+TGG - chr1_1:28554857-28554876 None:intergenic 50.0%
CCAATGGCGTGTTTGTATGG+TGG + chr1_1:28554854-28554873 Msa0017160:intron 50.0%
TCTTGTCCCTGCAACACAGA+AGG + chr1_1:28555072-28555091 Msa0017160:CDS 50.0%
TGCAGACCTTCTGTGTTGCA+GGG - chr1_1:28555081-28555100 None:intergenic 50.0%
TTGCAGACCTTCTGTGTTGC+AGG - chr1_1:28555082-28555101 None:intergenic 50.0%
GTGTATAGTCTTCCTGTCCC+TGG + chr1_1:28555226-28555245 Msa0017160:intron 50.0%
CAAGTCTTACCACCAGATCC+AGG - chr1_1:28555247-28555266 None:intergenic 50.0%
ACACCTGCTAGTCCTAGTTG+TGG + chr1_1:28555298-28555317 Msa0017160:intron 50.0%
CCTAAACAGGCACCACAACT+AGG - chr1_1:28555313-28555332 None:intergenic 50.0%
CCTAGTTGTGGTGCCTGTTT+AGG + chr1_1:28555310-28555329 Msa0017160:intron 50.0%
AGTTGTGGTGCCTGTTTAGG+TGG + chr1_1:28555313-28555332 Msa0017160:intron 50.0%
TGCCTGAGGTTCATTCATGC+GGG - chr1_1:28555356-28555375 None:intergenic 50.0%
TAGAAACTTTCCGGGGCGAA+TGG + chr1_1:28555751-28555770 Msa0017160:CDS 50.0%
AGAAACTTTCCGGGGCGAAT+GGG + chr1_1:28555752-28555771 Msa0017160:CDS 50.0%
GCAGATGCTGCAGCTGTATA+TGG - chr1_1:28555809-28555828 None:intergenic 50.0%
CACATCGCTCTTGCTCAGGA+AGG + chr1_1:28548563-28548582 Msa0017160:five_prime_UTR 55.0%
CCCTGCACCCAACACAAAAC+CGG - chr1_1:28548788-28548807 None:intergenic 55.0%
!! CCGGTTTTGTGTTGGGTGCA+GGG + chr1_1:28548785-28548804 Msa0017160:five_prime_UTR 55.0%
!! AAGTAGGGTAGAGCATCGGG+AGG + chr1_1:28550745-28550764 Msa0017160:intron 55.0%
!! AGTAGGGTAGAGCATCGGGA+GGG + chr1_1:28550746-28550765 Msa0017160:intron 55.0%
!! GGATCTTGGAGGAGGTGTTG+GGG - chr1_1:28551609-28551628 None:intergenic 55.0%
!! GGGATCTTGGAGGAGGTGTT+GGG - chr1_1:28551610-28551629 None:intergenic 55.0%
! AGGGATCTTGGAGGAGGTGT+TGG - chr1_1:28551611-28551630 None:intergenic 55.0%
ACACCTCCTCCAAGATCCCT+CGG + chr1_1:28551611-28551630 Msa0017160:intron 55.0%
CCCTCACGCCCAACACTATT+GGG - chr1_1:28551693-28551712 None:intergenic 55.0%
! CCCAATAGTGTTGGGCGTGA+GGG + chr1_1:28551690-28551709 Msa0017160:intron 55.0%
! CCAATAGTGTTGGGCGTGAG+GGG + chr1_1:28551691-28551710 Msa0017160:intron 55.0%
! CAATAGTGTTGGGCGTGAGG+GGG + chr1_1:28551692-28551711 Msa0017160:intron 55.0%
! GGTGTAGAACAGTGGTGGTG+GGG - chr1_1:28552155-28552174 None:intergenic 55.0%
GAGGTGTAGAACAGTGGTGG+TGG - chr1_1:28552157-28552176 None:intergenic 55.0%
TTGAACGGAGCATGTGCCTC+TGG - chr1_1:28552758-28552777 None:intergenic 55.0%
TCCTCAGACTACCGCTGTAG+TGG + chr1_1:28552805-28552824 Msa0017160:intron 55.0%
ACCACTACAGCGGTAGTCTG+AGG - chr1_1:28552809-28552828 None:intergenic 55.0%
! ATTGGAGCCACTGGTTGCCA+AGG + chr1_1:28554393-28554412 Msa0017160:CDS 55.0%
GGACTAACCTTGGCAACCAG+TGG - chr1_1:28554403-28554422 None:intergenic 55.0%
!! TCGGTGCTGTTGATGGCAGA+AGG - chr1_1:28554906-28554925 None:intergenic 55.0%
AGTCTTCCTGTCCCTGGATC+TGG + chr1_1:28555232-28555251 Msa0017160:intron 55.0%
TTACCACCAGATCCAGGGAC+AGG - chr1_1:28555241-28555260 None:intergenic 55.0%
! GCACCACAACTAGGACTAGC+AGG - chr1_1:28555304-28555323 None:intergenic 55.0%
TGCCCGCATGAATGAACCTC+AGG + chr1_1:28555351-28555370 Msa0017160:intron 55.0%
AGAAGCTGGGAACTTGCCTG+AGG - chr1_1:28555370-28555389 None:intergenic 55.0%
! GCTGCAGCATCTGCATTGAC+CGG + chr1_1:28555815-28555834 Msa0017160:CDS 55.0%
CAGGAAGGACATTGCAGGCC+AGG + chr1_1:28548578-28548597 Msa0017160:five_prime_UTR 60.0%
AGGACATTGCAGGCCAGGAG+AGG + chr1_1:28548583-28548602 Msa0017160:five_prime_UTR 60.0%
!! GCCGGTTTTGTGTTGGGTGC+AGG + chr1_1:28548784-28548803 Msa0017160:five_prime_UTR 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr1_1:28549573-28549592 Msa0017160:intron 60.0%
!! GGTAGAGCATCGGGAGGGTT+CGG + chr1_1:28550751-28550770 Msa0017160:intron 60.0%
!! GTAGAGCATCGGGAGGGTTC+GGG + chr1_1:28550752-28550771 Msa0017160:intron 60.0%
TCAGGTTTCGGGCGGGTCAA+CGG + chr1_1:28551346-28551365 Msa0017160:intron 60.0%
CACCTCCTCCAAGATCCCTC+GGG + chr1_1:28551612-28551631 Msa0017160:intron 60.0%
CGTGATAGTAGGTGGCCCGA+GGG - chr1_1:28551630-28551649 None:intergenic 60.0%
ACGTGATAGTAGGTGGCCCG+AGG - chr1_1:28551631-28551650 None:intergenic 60.0%
! GCCCAATAGTGTTGGGCGTG+AGG + chr1_1:28551689-28551708 Msa0017160:intron 60.0%
CCCCTCACGCCCAACACTAT+TGG - chr1_1:28551694-28551713 None:intergenic 60.0%
ACACCGGCGCTATAGCGTAG+TGG + chr1_1:28552492-28552511 Msa0017160:intron 60.0%
GGTGGCACCATAGACCCCAA+TGG + chr1_1:28554838-28554857 Msa0017160:intron 60.0%
CTTCCTGTCCCTGGATCTGG+TGG + chr1_1:28555235-28555254 Msa0017160:intron 60.0%
GTAGGTGGCCCGAGGGATCT+TGG - chr1_1:28551623-28551642 None:intergenic 65.0%
TCCACCATGCCATTCCGCCG+TGG - chr1_1:28554772-28554791 None:intergenic 65.0%
TTCCGGGGCGAATGGGACAC+AGG + chr1_1:28555759-28555778 Msa0017160:CDS 65.0%
TCCGGGGCGAATGGGACACA+GGG + chr1_1:28555760-28555779 Msa0017160:CDS 65.0%
TCCCTGTGTCCCATTCGCCC+CGG - chr1_1:28555764-28555783 None:intergenic 65.0%
GGGCGAATGGGACACAGGGA+AGG + chr1_1:28555764-28555783 Msa0017160:CDS 65.0%
GGTGGCCGGGGTTTGAACCC+CGG - chr1_1:28549581-28549600 None:intergenic 70.0%
GGCCCGAGGGATCTTGGAGG+AGG - chr1_1:28551617-28551636 None:intergenic 70.0%
GGTGGCCCGAGGGATCTTGG+AGG - chr1_1:28551620-28551639 None:intergenic 70.0%
!! TGGTGGCCACGGTGCTGCCA+CGG + chr1_1:28554752-28554771 Msa0017160:intron 70.0%
ATTCCGCCGTGGCAGCACCG+TGG - chr1_1:28554761-28554780 None:intergenic 70.0%
!! ACGGTGCTGCCACGGCGGAA+TGG + chr1_1:28554760-28554779 Msa0017160:intron 70.0%
GCTGCCACGGCGGAATGGCA+TGG + chr1_1:28554765-28554784 Msa0017160:intron 70.0%
GCCACGGCGGAATGGCATGG+TGG + chr1_1:28554768-28554787 Msa0017160:intron 70.0%
!! TGGCCACGGTGCTGCCACGG+CGG + chr1_1:28554755-28554774 Msa0017160:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 28548151 28556123 28548151 ID=Msa0017160;Name=Msa0017160
chr1_1 mRNA 28548151 28556123 28548151 ID=Msa0017160-mRNA-1;Parent=Msa0017160;Name=Msa0017160-mRNA-1;_AED=0.29;_eAED=0.29;_QI=494|0.8|0.90|1|0.7|0.90|11|252|211
chr1_1 exon 28548151 28548434 28548151 ID=Msa0017160-mRNA-1:exon:9508;Parent=Msa0017160-mRNA-1
chr1_1 exon 28548536 28548604 28548536 ID=Msa0017160-mRNA-1:exon:9509;Parent=Msa0017160-mRNA-1
chr1_1 exon 28548706 28548822 28548706 ID=Msa0017160-mRNA-1:exon:9510;Parent=Msa0017160-mRNA-1
chr1_1 exon 28549931 28550005 28549931 ID=Msa0017160-mRNA-1:exon:9511;Parent=Msa0017160-mRNA-1
chr1_1 exon 28550095 28550172 28550095 ID=Msa0017160-mRNA-1:exon:9512;Parent=Msa0017160-mRNA-1
chr1_1 exon 28550286 28550381 28550286 ID=Msa0017160-mRNA-1:exon:9513;Parent=Msa0017160-mRNA-1
chr1_1 exon 28553773 28553822 28553773 ID=Msa0017160-mRNA-1:exon:9514;Parent=Msa0017160-mRNA-1
chr1_1 exon 28554360 28554414 28554360 ID=Msa0017160-mRNA-1:exon:9515;Parent=Msa0017160-mRNA-1
chr1_1 exon 28554512 28554628 28554512 ID=Msa0017160-mRNA-1:exon:9516;Parent=Msa0017160-mRNA-1
chr1_1 exon 28555046 28555093 28555046 ID=Msa0017160-mRNA-1:exon:9517;Parent=Msa0017160-mRNA-1
chr1_1 exon 28555731 28556123 28555731 ID=Msa0017160-mRNA-1:exon:9518;Parent=Msa0017160-mRNA-1
chr1_1 five_prime_UTR 28548151 28548434 28548151 ID=Msa0017160-mRNA-1:five_prime_utr;Parent=Msa0017160-mRNA-1
chr1_1 five_prime_UTR 28548536 28548604 28548536 ID=Msa0017160-mRNA-1:five_prime_utr;Parent=Msa0017160-mRNA-1
chr1_1 five_prime_UTR 28548706 28548822 28548706 ID=Msa0017160-mRNA-1:five_prime_utr;Parent=Msa0017160-mRNA-1
chr1_1 five_prime_UTR 28549931 28549954 28549931 ID=Msa0017160-mRNA-1:five_prime_utr;Parent=Msa0017160-mRNA-1
chr1_1 CDS 28549955 28550005 28549955 ID=Msa0017160-mRNA-1:cds;Parent=Msa0017160-mRNA-1
chr1_1 CDS 28550095 28550172 28550095 ID=Msa0017160-mRNA-1:cds;Parent=Msa0017160-mRNA-1
chr1_1 CDS 28550286 28550381 28550286 ID=Msa0017160-mRNA-1:cds;Parent=Msa0017160-mRNA-1
chr1_1 CDS 28553773 28553822 28553773 ID=Msa0017160-mRNA-1:cds;Parent=Msa0017160-mRNA-1
chr1_1 CDS 28554360 28554414 28554360 ID=Msa0017160-mRNA-1:cds;Parent=Msa0017160-mRNA-1
chr1_1 CDS 28554512 28554628 28554512 ID=Msa0017160-mRNA-1:cds;Parent=Msa0017160-mRNA-1
chr1_1 CDS 28555046 28555093 28555046 ID=Msa0017160-mRNA-1:cds;Parent=Msa0017160-mRNA-1
chr1_1 CDS 28555731 28555871 28555731 ID=Msa0017160-mRNA-1:cds;Parent=Msa0017160-mRNA-1
chr1_1 three_prime_UTR 28555872 28556123 28555872 ID=Msa0017160-mRNA-1:three_prime_utr;Parent=Msa0017160-mRNA-1
Gene Sequence

>Msa0017160

ATGGATGGAGAAATGCCAAGTTATTTGCTTGCCAAGGATTTGATTCTGCAAATTATTGGTGAAATAAGTGTGGCTGGTGCAACTTACAAATCAATGGAGTTTGTTGGCTCAACTGTTGAAAGTCTAAACATGGAAGAACGGATGACATTGTGCAACATGGTTGTTGAAGCTGGAGGAAAGAATGGTGTTATTCCTCCAGATAGCATTACATATAAATATCTTGAGGGCAAGACATCTGTGCCATATGAACCAGTATATAGTGACCAGCAAGCAAGATTTCTCTCTGAGTATAGATTTGATGTCTCAAAATTGGAGCCACTGGTTGCCAAGCCTCATTCACCAGATAACCGTGCTTTGGCAAGAGAGTGCAAGGATGTGAAAATTGACAGAGTATACATAGGATCTTGTACGGGTGGAAAAACAGAAGATTTCATGGCTGCTGCAAAAGGTAAAAAGGTCAAAGTTCCCACATTTCTTGTCCCTGCAACACAGAAGGTTTGTGTTTCAACCACAAATAGAAACTTTCCGGGGCGAATGGGACACAGGGAAGGTGAAATATATTTGGCTTCACCATATACAGCTGCAGCATCTGCATTGACCGGTTATGTTACTGATCCAAGAGAGTTCTTGCAGTAA
Protein sequence

>Msa0017160

MDGEMPSYLLAKDLILQIIGEISVAGATYKSMEFVGSTVESLNMEERMTLCNMVVEAGGKNGVIPPDSITYKYLEGKTSVPYEPVYSDQQARFLSEYRFDVSKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKGKKVKVPTFLVPATQKVCVSTTNRNFPGRMGHREGEIYLASPYTAAASALTGYVTDPREFLQ*