Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255140 | XP_003629427.1 | 97.222 | 72 | 2 | 0 | 1 | 72 | 1 | 72 | 1.16e-44 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255140 | sp|F4JVB8|RADL1_ARATH | 66.154 | 65 | 21 | 1 | 5 | 68 | 14 | 78 | 1.55e-27 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255140 | G7LDY8 | 97.222 | 72 | 2 | 0 | 1 | 72 | 1 | 72 | 5.55e-45 | 147 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621380 | Msa1255140 | 0.821337 | 4.260358e-53 | -8.615850e-47 |
| Msa0621390 | Msa1255140 | 0.867705 | 1.123469e-65 | -8.615850e-47 |
| Msa0621400 | Msa1255140 | 0.823179 | 1.592333e-53 | -8.615850e-47 |
| Msa0621410 | Msa1255140 | 0.861751 | 8.232595e-64 | -8.615850e-47 |
| Msa1255120 | Msa1255140 | 0.814552 | 1.453369e-51 | -8.615850e-47 |
| Msa1255130 | Msa1255140 | 0.901245 | 3.256620e-78 | -8.615850e-47 |
| Msa1255140 | Msa1295570 | 0.801709 | 7.922437e-49 | -8.615850e-47 |
| Msa1255140 | Msa1295580 | 0.865699 | 4.884434e-65 | -8.615850e-47 |
| Msa1255140 | Msa1295590 | 0.895436 | 9.604409e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255140 | MtrunA17_Chr8g0373111 | 97.222 | 72 | 2 | 0 | 1 | 72 | 1 | 72 | 1.07e-48 | 147 |
| Msa1255140 | MtrunA17_Chr8g0373121 | 97.222 | 72 | 2 | 0 | 1 | 72 | 1 | 72 | 1.07e-48 | 147 |
| Msa1255140 | MtrunA17_Chr8g0373131 | 95.833 | 72 | 3 | 0 | 1 | 72 | 1 | 72 | 3.44e-48 | 146 |
| Msa1255140 | MtrunA17_Chr5g0404301 | 82.258 | 62 | 11 | 0 | 3 | 64 | 2 | 63 | 1.34e-35 | 114 |
| Msa1255140 | MtrunA17_Chr8g0373101 | 69.565 | 69 | 20 | 1 | 1 | 69 | 1 | 68 | 4.40e-32 | 105 |
| Msa1255140 | MtrunA17_Chr3g0144631 | 64.615 | 65 | 22 | 1 | 5 | 68 | 16 | 80 | 1.84e-27 | 94.7 |
| Msa1255140 | MtrunA17_Chr6g0449111 | 58.571 | 70 | 27 | 2 | 2 | 70 | 7 | 75 | 6.07e-26 | 90.9 |
| Msa1255140 | MtrunA17_Chr1g0155181 | 55.224 | 67 | 29 | 1 | 2 | 67 | 4 | 70 | 8.11e-26 | 90.5 |
| Msa1255140 | MtrunA17_Chr5g0404101 | 54.688 | 64 | 28 | 1 | 5 | 67 | 19 | 82 | 1.49e-24 | 87.8 |
| Msa1255140 | MtrunA17_Chr3g0141601 | 55.072 | 69 | 30 | 1 | 2 | 69 | 4 | 72 | 7.78e-24 | 85.9 |
| Msa1255140 | MtrunA17_Chr3g0081631 | 55.072 | 69 | 29 | 1 | 2 | 68 | 7 | 75 | 1.09e-22 | 82.8 |
| Msa1255140 | MtrunA17_Chr7g0255841 | 58.065 | 62 | 25 | 1 | 7 | 67 | 14 | 75 | 5.07e-22 | 81.3 |
| Msa1255140 | MtrunA17_Chr5g0429521 | 55.072 | 69 | 30 | 1 | 1 | 68 | 25 | 93 | 1.84e-20 | 82.0 |
| Msa1255140 | MtrunA17_Chr3g0141641 | 55.385 | 65 | 28 | 1 | 4 | 67 | 2 | 66 | 9.57e-20 | 75.5 |
| Msa1255140 | MtrunA17_Chr3g0104071 | 54.412 | 68 | 30 | 1 | 2 | 68 | 40 | 107 | 1.17e-19 | 80.1 |
| Msa1255140 | MtrunA17_Chr7g0241761 | 52.174 | 69 | 32 | 1 | 2 | 69 | 32 | 100 | 1.36e-17 | 74.3 |
| Msa1255140 | MtrunA17_Chr8g0365011 | 43.836 | 73 | 40 | 1 | 1 | 72 | 4 | 76 | 2.08e-16 | 70.9 |
| Msa1255140 | MtrunA17_Chr5g0436501 | 50.769 | 65 | 31 | 1 | 3 | 66 | 25 | 89 | 5.90e-16 | 69.3 |
| Msa1255140 | MtrunA17_Chr7g0270711 | 45.714 | 70 | 36 | 1 | 3 | 70 | 9 | 78 | 1.11e-14 | 62.4 |
| Msa1255140 | MtrunA17_Chr1g0194071 | 52.542 | 59 | 26 | 1 | 3 | 59 | 9 | 67 | 1.52e-14 | 62.4 |
| Msa1255140 | MtrunA17_Chr1g0162081 | 39.130 | 69 | 41 | 1 | 2 | 69 | 9 | 77 | 4.63e-14 | 64.3 |
| Msa1255140 | MtrunA17_Chr8g0364741 | 37.500 | 72 | 44 | 1 | 2 | 72 | 7 | 78 | 5.64e-13 | 59.3 |
| Msa1255140 | MtrunA17_Chr1g0210471 | 40.000 | 65 | 38 | 1 | 3 | 66 | 22 | 86 | 1.59e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1255140 | AT4G39250.1 | 66.154 | 65 | 21 | 1 | 5 | 68 | 14 | 78 | 1.57e-28 | 98.2 |
| Msa1255140 | AT1G75250.2 | 64.615 | 65 | 22 | 1 | 5 | 68 | 12 | 76 | 6.48e-27 | 94.0 |
| Msa1255140 | AT1G75250.1 | 64.615 | 65 | 22 | 1 | 5 | 68 | 12 | 76 | 8.19e-27 | 94.7 |
| Msa1255140 | AT2G21650.1 | 58.462 | 65 | 26 | 1 | 5 | 68 | 14 | 78 | 6.44e-25 | 89.0 |
| Msa1255140 | AT1G19510.1 | 61.290 | 62 | 23 | 1 | 8 | 68 | 15 | 76 | 1.10e-23 | 85.9 |
| Msa1255140 | AT5G58900.1 | 52.857 | 70 | 32 | 1 | 2 | 70 | 31 | 100 | 1.29e-18 | 77.0 |
| Msa1255140 | AT2G38090.1 | 52.174 | 69 | 32 | 1 | 2 | 69 | 26 | 94 | 5.92e-18 | 75.5 |
| Msa1255140 | AT2G18328.1 | 53.226 | 62 | 28 | 1 | 8 | 68 | 14 | 75 | 6.18e-18 | 70.9 |
| Msa1255140 | AT4G36570.1 | 65.909 | 44 | 14 | 1 | 5 | 47 | 12 | 55 | 7.63e-16 | 65.1 |
| Msa1255140 | AT5G05790.2 | 45.588 | 68 | 36 | 1 | 2 | 68 | 28 | 95 | 1.77e-15 | 68.6 |
| Msa1255140 | AT5G05790.1 | 45.588 | 68 | 36 | 1 | 2 | 68 | 28 | 95 | 1.77e-15 | 68.6 |
| Msa1255140 | AT3G11280.2 | 49.206 | 63 | 31 | 1 | 5 | 66 | 33 | 95 | 2.68e-15 | 67.8 |
| Msa1255140 | AT3G11280.1 | 49.206 | 63 | 31 | 1 | 5 | 66 | 33 | 95 | 2.68e-15 | 67.8 |
| Msa1255140 | AT5G08520.1 | 49.231 | 65 | 32 | 1 | 5 | 68 | 12 | 76 | 5.38e-14 | 64.7 |
| Msa1255140 | AT5G04760.1 | 43.284 | 67 | 37 | 1 | 1 | 66 | 1 | 67 | 3.77e-13 | 61.6 |
| Msa1255140 | AT5G01200.1 | 45.070 | 71 | 37 | 2 | 4 | 72 | 29 | 99 | 2.57e-12 | 60.1 |
| Msa1255140 | AT1G49010.1 | 41.429 | 70 | 37 | 2 | 1 | 66 | 4 | 73 | 4.61e-12 | 59.3 |
Find 32 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATAACCAACCAATATT+TGG | 0.164471 | 8_2:+53549437 | Msa1255140:three_prime_UTR |
| GCAACATTGTGCCATCTTTC+AGG | 0.193556 | 8_2:-53548579 | None:intergenic |
| ACCAATATTTGGCGTATCTT+TGG | 0.255385 | 8_2:+53549448 | Msa1255140:three_prime_UTR |
| GTACGATGTAAGGAAATTAA+AGG | 0.287275 | 8_2:-53549594 | None:intergenic |
| TATTCAAGCTTATTGTGTTC+TGG | 0.287731 | 8_2:-53549421 | None:intergenic |
| GCCAAAGATACGCCAAATAT+TGG | 0.311885 | 8_2:-53549449 | None:intergenic |
| CTATCTATAGAATGAAATTA+AGG | 0.327546 | 8_2:-53549544 | None:intergenic |
| TATATTATACCTTAGGAGTT+GGG | 0.354809 | 8_2:-53548714 | None:intergenic |
| TTCATTCATTCATCAACAAA+TGG | 0.409031 | 8_2:+53548488 | Msa1255140:exon |
| TGTAACGAGGAAAAGGGATA+TGG | 0.417505 | 8_2:-53548683 | None:intergenic |
| GACTGCCGCATTCACTTGGC+AGG | 0.422647 | 8_2:-53549504 | None:intergenic |
| ATGAAATTAAGGAAATATAT+AGG | 0.425372 | 8_2:-53549533 | None:intergenic |
| TACGTTGAACATCTTCTTTG+AGG | 0.435409 | 8_2:-53548650 | None:intergenic |
| ATCAACAAATGGCAACCTCT+TGG | 0.450563 | 8_2:+53548499 | Msa1255140:exon |
| ATTATTGTAAGTTTATATGA+AGG | 0.454971 | 8_2:+53549654 | Msa1255140:three_prime_UTR |
| CAAACTGTTTGAACAAGCAT+TGG | 0.467435 | 8_2:+53548536 | Msa1255140:CDS |
| TACGATGTAAGGAAATTAAA+GGG | 0.482580 | 8_2:-53549593 | None:intergenic |
| AAGATACGCCAAATATTGGT+TGG | 0.516679 | 8_2:-53549445 | None:intergenic |
| AGAAGACTGCCGCATTCACT+TGG | 0.517578 | 8_2:-53549508 | None:intergenic |
| ATATATTATACCTTAGGAGT+TGG | 0.518768 | 8_2:-53548715 | None:intergenic |
| CACAATGTTGCCAAAGTGGT+TGG | 0.534351 | 8_2:+53548591 | Msa1255140:CDS |
| TGGCAACCTCTTGGACTGCA+AGG | 0.539984 | 8_2:+53548508 | Msa1255140:CDS |
| TTTCAGTCAAGTGAAGGTAT+GGG | 0.541884 | 8_2:-53548421 | None:intergenic |
| ATAGAGAAACTCCTGAAAGA+TGG | 0.546752 | 8_2:+53548568 | Msa1255140:CDS |
| AAAACTAACCCCAACTCCTA+AGG | 0.547909 | 8_2:+53548705 | Msa1255140:CDS |
| ATATTATACCTTAGGAGTTG+GGG | 0.548128 | 8_2:-53548713 | None:intergenic |
| TGTAAGGAAATTAAAGGGCG+AGG | 0.564312 | 8_2:-53549588 | None:intergenic |
| GTTCTGCCTTGCAGTCCAAG+AGG | 0.596751 | 8_2:-53548514 | None:intergenic |
| TGCACCCTGCCAAGTGAATG+CGG | 0.623666 | 8_2:+53549499 | Msa1255140:three_prime_UTR |
| ATGGCACAATGTTGCCAAAG+TGG | 0.642850 | 8_2:+53548587 | Msa1255140:CDS |
| GATGTTCAACGTATTGAGCG+TGG | 0.669371 | 8_2:+53548660 | Msa1255140:CDS |
| ACTGCCGCATTCACTTGGCA+GGG | 0.679647 | 8_2:-53549503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATAACTATAATATAAA+TGG | + | chr8_2:53549103-53549122 | Msa1255140:intron | 10.0% |
| !! | TAATAAGTATTTGAAAATTT+CGG | + | chr8_2:53549292-53549311 | Msa1255140:intron | 10.0% |
| !!! | AAATACAATACTTTATTTTT+TGG | - | chr8_2:53549619-53549638 | None:intergenic | 10.0% |
| !! | ATGAATAACTATAATATAAA+TGG | + | chr8_2:53549103-53549122 | Msa1255140:intron | 10.0% |
| !! | TAATAAGTATTTGAAAATTT+CGG | + | chr8_2:53549292-53549311 | Msa1255140:intron | 10.0% |
| !!! | AAATACAATACTTTATTTTT+TGG | - | chr8_2:53549619-53549638 | None:intergenic | 10.0% |
| !! | TCAATATCTAATTAAGTTTA+GGG | - | chr8_2:53548836-53548855 | None:intergenic | 15.0% |
| !! | TTCAATATCTAATTAAGTTT+AGG | - | chr8_2:53548837-53548856 | None:intergenic | 15.0% |
| !! | AAACTTAATTAGATATTGAA+TGG | + | chr8_2:53548837-53548856 | Msa1255140:intron | 15.0% |
| !! | AACTTAATTAGATATTGAAT+GGG | + | chr8_2:53548838-53548857 | Msa1255140:intron | 15.0% |
| !!! | AATATGTTTAATTTTCTCTT+AGG | + | chr8_2:53548949-53548968 | Msa1255140:intron | 15.0% |
| !! | ATGAAATTAAGGAAATATAT+AGG | - | chr8_2:53549536-53549555 | None:intergenic | 15.0% |
| !! | ATTATTGTAAGTTTATATGA+AGG | + | chr8_2:53549654-53549673 | Msa1255140:three_prime_UTR | 15.0% |
| !! | TCAATATCTAATTAAGTTTA+GGG | - | chr8_2:53548836-53548855 | None:intergenic | 15.0% |
| !! | TTCAATATCTAATTAAGTTT+AGG | - | chr8_2:53548837-53548856 | None:intergenic | 15.0% |
| !! | AAACTTAATTAGATATTGAA+TGG | + | chr8_2:53548837-53548856 | Msa1255140:intron | 15.0% |
| !! | AACTTAATTAGATATTGAAT+GGG | + | chr8_2:53548838-53548857 | Msa1255140:intron | 15.0% |
| !!! | AATATGTTTAATTTTCTCTT+AGG | + | chr8_2:53548949-53548968 | Msa1255140:intron | 15.0% |
| !! | ATGAAATTAAGGAAATATAT+AGG | - | chr8_2:53549536-53549555 | None:intergenic | 15.0% |
| !! | ATTATTGTAAGTTTATATGA+AGG | + | chr8_2:53549654-53549673 | Msa1255140:three_prime_UTR | 15.0% |
| !! | TATTGTCAGAAAAAAGAATA+AGG | - | chr8_2:53548461-53548480 | None:intergenic | 20.0% |
| !! | AAGTACATATATTATACCTT+AGG | - | chr8_2:53548724-53548743 | None:intergenic | 20.0% |
| !! | CAATATCTAATTAAGTTTAG+GGG | - | chr8_2:53548835-53548854 | None:intergenic | 20.0% |
| !!! | AGTTATTAGTTTTATACATG+TGG | + | chr8_2:53548900-53548919 | Msa1255140:intron | 20.0% |
| !! | CATATTAATGTGTATATGTA+TGG | - | chr8_2:53548935-53548954 | None:intergenic | 20.0% |
| !! | AAAATTGATGAAAGGTTATA+AGG | - | chr8_2:53549225-53549244 | None:intergenic | 20.0% |
| !! | CTATCTATAGAATGAAATTA+AGG | - | chr8_2:53549547-53549566 | None:intergenic | 20.0% |
| !! | TATTGTCAGAAAAAAGAATA+AGG | - | chr8_2:53548461-53548480 | None:intergenic | 20.0% |
| !! | AAGTACATATATTATACCTT+AGG | - | chr8_2:53548724-53548743 | None:intergenic | 20.0% |
| !! | CAATATCTAATTAAGTTTAG+GGG | - | chr8_2:53548835-53548854 | None:intergenic | 20.0% |
| !!! | AGTTATTAGTTTTATACATG+TGG | + | chr8_2:53548900-53548919 | Msa1255140:intron | 20.0% |
| !! | CATATTAATGTGTATATGTA+TGG | - | chr8_2:53548935-53548954 | None:intergenic | 20.0% |
| !! | AAAATTGATGAAAGGTTATA+AGG | - | chr8_2:53549225-53549244 | None:intergenic | 20.0% |
| !! | CTATCTATAGAATGAAATTA+AGG | - | chr8_2:53549547-53549566 | None:intergenic | 20.0% |
| !!! | TATATTTTTCAGTCAAGTGA+AGG | - | chr8_2:53548430-53548449 | None:intergenic | 25.0% |
| ! | TTCATTCATTCATCAACAAA+TGG | + | chr8_2:53548488-53548507 | Msa1255140:exon | 25.0% |
| ! | TATATTATACCTTAGGAGTT+GGG | - | chr8_2:53548717-53548736 | None:intergenic | 25.0% |
| ! | ATATATTATACCTTAGGAGT+TGG | - | chr8_2:53548718-53548737 | None:intergenic | 25.0% |
| ! | TAGGCATTAAATTAAGAACA+TGG | - | chr8_2:53548771-53548790 | None:intergenic | 25.0% |
| ! | TTCTTAATTTAATGCCTATG+AGG | + | chr8_2:53548773-53548792 | Msa1255140:intron | 25.0% |
| ! | TCTTAATTTAATGCCTATGA+GGG | + | chr8_2:53548774-53548793 | Msa1255140:intron | 25.0% |
| ! | TATTGAATGGGATAAGAATT+TGG | + | chr8_2:53548850-53548869 | Msa1255140:intron | 25.0% |
| ! | ATTGAATGGGATAAGAATTT+GGG | + | chr8_2:53548851-53548870 | Msa1255140:intron | 25.0% |
| !! | AATAACTATAGCACTTTTCA+GGG | - | chr8_2:53548887-53548906 | None:intergenic | 25.0% |
| !! | TAATAACTATAGCACTTTTC+AGG | - | chr8_2:53548888-53548907 | None:intergenic | 25.0% |
| ! | CAATGAACAATATAGGATAT+AGG | - | chr8_2:53549071-53549090 | None:intergenic | 25.0% |
| ! | TATTCAGCAATGAACAATAT+AGG | - | chr8_2:53549078-53549097 | None:intergenic | 25.0% |
| ! | TTGCGTATAAAATTGATGAA+AGG | - | chr8_2:53549233-53549252 | None:intergenic | 25.0% |
| ! | TTGAATAACCAACCAATATT+TGG | + | chr8_2:53549437-53549456 | Msa1255140:three_prime_UTR | 25.0% |
| ! | TACGATGTAAGGAAATTAAA+GGG | - | chr8_2:53549596-53549615 | None:intergenic | 25.0% |
| !!! | TTATTTTTTGGTACGATGTA+AGG | - | chr8_2:53549607-53549626 | None:intergenic | 25.0% |
| !!! | TATATTTTTCAGTCAAGTGA+AGG | - | chr8_2:53548430-53548449 | None:intergenic | 25.0% |
| ! | TTCATTCATTCATCAACAAA+TGG | + | chr8_2:53548488-53548507 | Msa1255140:exon | 25.0% |
| ! | TATATTATACCTTAGGAGTT+GGG | - | chr8_2:53548717-53548736 | None:intergenic | 25.0% |
| ! | ATATATTATACCTTAGGAGT+TGG | - | chr8_2:53548718-53548737 | None:intergenic | 25.0% |
| ! | TAGGCATTAAATTAAGAACA+TGG | - | chr8_2:53548771-53548790 | None:intergenic | 25.0% |
| ! | TTCTTAATTTAATGCCTATG+AGG | + | chr8_2:53548773-53548792 | Msa1255140:intron | 25.0% |
| ! | TCTTAATTTAATGCCTATGA+GGG | + | chr8_2:53548774-53548793 | Msa1255140:intron | 25.0% |
| ! | TATTGAATGGGATAAGAATT+TGG | + | chr8_2:53548850-53548869 | Msa1255140:intron | 25.0% |
| ! | ATTGAATGGGATAAGAATTT+GGG | + | chr8_2:53548851-53548870 | Msa1255140:intron | 25.0% |
| !! | AATAACTATAGCACTTTTCA+GGG | - | chr8_2:53548887-53548906 | None:intergenic | 25.0% |
| !! | TAATAACTATAGCACTTTTC+AGG | - | chr8_2:53548888-53548907 | None:intergenic | 25.0% |
| ! | CAATGAACAATATAGGATAT+AGG | - | chr8_2:53549071-53549090 | None:intergenic | 25.0% |
| ! | TATTCAGCAATGAACAATAT+AGG | - | chr8_2:53549078-53549097 | None:intergenic | 25.0% |
| ! | TTGCGTATAAAATTGATGAA+AGG | - | chr8_2:53549233-53549252 | None:intergenic | 25.0% |
| ! | TTGAATAACCAACCAATATT+TGG | + | chr8_2:53549437-53549456 | Msa1255140:three_prime_UTR | 25.0% |
| ! | TACGATGTAAGGAAATTAAA+GGG | - | chr8_2:53549596-53549615 | None:intergenic | 25.0% |
| !!! | TTATTTTTTGGTACGATGTA+AGG | - | chr8_2:53549607-53549626 | None:intergenic | 25.0% |
| GTCAGAAAAAAGAATAAGGT+TGG | - | chr8_2:53548457-53548476 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTAACGAGGAAAA+GGG | - | chr8_2:53548692-53548711 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTAACGAGGAAA+AGG | - | chr8_2:53548693-53548712 | None:intergenic | 30.0% |
| ATATTATACCTTAGGAGTTG+GGG | - | chr8_2:53548716-53548735 | None:intergenic | 30.0% | |
| TGTGTATATGTATGGAGTTA+TGG | - | chr8_2:53548927-53548946 | None:intergenic | 30.0% | |
| ATAAGTCATTGTTTAGTGCA+TGG | - | chr8_2:53549005-53549024 | None:intergenic | 30.0% | |
| ! | AACAATGACTTATGACTTGT+CGG | + | chr8_2:53549012-53549031 | Msa1255140:intron | 30.0% |
| TATTCAAGCTTATTGTGTTC+TGG | - | chr8_2:53549424-53549443 | None:intergenic | 30.0% | |
| GTACGATGTAAGGAAATTAA+AGG | - | chr8_2:53549597-53549616 | None:intergenic | 30.0% | |
| GTCAGAAAAAAGAATAAGGT+TGG | - | chr8_2:53548457-53548476 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTAACGAGGAAAA+GGG | - | chr8_2:53548692-53548711 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTAACGAGGAAA+AGG | - | chr8_2:53548693-53548712 | None:intergenic | 30.0% |
| ATATTATACCTTAGGAGTTG+GGG | - | chr8_2:53548716-53548735 | None:intergenic | 30.0% | |
| TGTGTATATGTATGGAGTTA+TGG | - | chr8_2:53548927-53548946 | None:intergenic | 30.0% | |
| ATAAGTCATTGTTTAGTGCA+TGG | - | chr8_2:53549005-53549024 | None:intergenic | 30.0% | |
| ! | AACAATGACTTATGACTTGT+CGG | + | chr8_2:53549012-53549031 | Msa1255140:intron | 30.0% |
| TATTCAAGCTTATTGTGTTC+TGG | - | chr8_2:53549424-53549443 | None:intergenic | 30.0% | |
| GTACGATGTAAGGAAATTAA+AGG | - | chr8_2:53549597-53549616 | None:intergenic | 30.0% | |
| CAAACTGTTTGAACAAGCAT+TGG | + | chr8_2:53548536-53548555 | Msa1255140:CDS | 35.0% | |
| ATAGAGAAACTCCTGAAAGA+TGG | + | chr8_2:53548568-53548587 | Msa1255140:CDS | 35.0% | |
| !! | AACTGATTTTCCAACCACTT+TGG | - | chr8_2:53548604-53548623 | None:intergenic | 35.0% |
| TACGTTGAACATCTTCTTTG+AGG | - | chr8_2:53548653-53548672 | None:intergenic | 35.0% | |
| GGCTCATAAATCAAAGAGTA+TGG | - | chr8_2:53548814-53548833 | None:intergenic | 35.0% | |
| ACTATAATATAAATGGCCCC+AGG | + | chr8_2:53549110-53549129 | Msa1255140:intron | 35.0% | |
| !!! | ACTTTTTTTCCAGCAAACCT+GGG | - | chr8_2:53549130-53549149 | None:intergenic | 35.0% |
| AAGAACCTGCGAAGTATATA+GGG | - | chr8_2:53549391-53549410 | None:intergenic | 35.0% | |
| AAGATACGCCAAATATTGGT+TGG | - | chr8_2:53549448-53549467 | None:intergenic | 35.0% | |
| ACCAATATTTGGCGTATCTT+TGG | + | chr8_2:53549448-53549467 | Msa1255140:three_prime_UTR | 35.0% | |
| CAAACTGTTTGAACAAGCAT+TGG | + | chr8_2:53548536-53548555 | Msa1255140:CDS | 35.0% | |
| ATAGAGAAACTCCTGAAAGA+TGG | + | chr8_2:53548568-53548587 | Msa1255140:CDS | 35.0% | |
| !! | AACTGATTTTCCAACCACTT+TGG | - | chr8_2:53548604-53548623 | None:intergenic | 35.0% |
| TACGTTGAACATCTTCTTTG+AGG | - | chr8_2:53548653-53548672 | None:intergenic | 35.0% | |
| GGCTCATAAATCAAAGAGTA+TGG | - | chr8_2:53548814-53548833 | None:intergenic | 35.0% | |
| ACTATAATATAAATGGCCCC+AGG | + | chr8_2:53549110-53549129 | Msa1255140:intron | 35.0% | |
| !!! | ACTTTTTTTCCAGCAAACCT+GGG | - | chr8_2:53549130-53549149 | None:intergenic | 35.0% |
| AAGAACCTGCGAAGTATATA+GGG | - | chr8_2:53549391-53549410 | None:intergenic | 35.0% | |
| AAGATACGCCAAATATTGGT+TGG | - | chr8_2:53549448-53549467 | None:intergenic | 35.0% | |
| ACCAATATTTGGCGTATCTT+TGG | + | chr8_2:53549448-53549467 | Msa1255140:three_prime_UTR | 35.0% | |
| ATCAACAAATGGCAACCTCT+TGG | + | chr8_2:53548499-53548518 | Msa1255140:exon | 40.0% | |
| TGTAACGAGGAAAAGGGATA+TGG | - | chr8_2:53548686-53548705 | None:intergenic | 40.0% | |
| !!! | TTGGGGTTAGTTTTGTAACG+AGG | - | chr8_2:53548699-53548718 | None:intergenic | 40.0% |
| AAAACTAACCCCAACTCCTA+AGG | + | chr8_2:53548705-53548724 | Msa1255140:CDS | 40.0% | |
| TTCGTTTAGACTTCCCTCAT+AGG | - | chr8_2:53548790-53548809 | None:intergenic | 40.0% | |
| GTGCATGGACATATTGTAGT+TGG | - | chr8_2:53548990-53549009 | None:intergenic | 40.0% | |
| !!! | CTTTTTTTCCAGCAAACCTG+GGG | - | chr8_2:53549129-53549148 | None:intergenic | 40.0% |
| !!! | CACTTTTTTTCCAGCAAACC+TGG | - | chr8_2:53549131-53549150 | None:intergenic | 40.0% |
| TCTTTCCCTATATACTTCGC+AGG | + | chr8_2:53549383-53549402 | Msa1255140:intron | 40.0% | |
| CAAGAACCTGCGAAGTATAT+AGG | - | chr8_2:53549392-53549411 | None:intergenic | 40.0% | |
| GCCAAAGATACGCCAAATAT+TGG | - | chr8_2:53549452-53549471 | None:intergenic | 40.0% | |
| TGTAAGGAAATTAAAGGGCG+AGG | - | chr8_2:53549591-53549610 | None:intergenic | 40.0% | |
| ATCAACAAATGGCAACCTCT+TGG | + | chr8_2:53548499-53548518 | Msa1255140:exon | 40.0% | |
| TGTAACGAGGAAAAGGGATA+TGG | - | chr8_2:53548686-53548705 | None:intergenic | 40.0% | |
| !!! | TTGGGGTTAGTTTTGTAACG+AGG | - | chr8_2:53548699-53548718 | None:intergenic | 40.0% |
| AAAACTAACCCCAACTCCTA+AGG | + | chr8_2:53548705-53548724 | Msa1255140:CDS | 40.0% | |
| TTCGTTTAGACTTCCCTCAT+AGG | - | chr8_2:53548790-53548809 | None:intergenic | 40.0% | |
| GTGCATGGACATATTGTAGT+TGG | - | chr8_2:53548990-53549009 | None:intergenic | 40.0% | |
| !!! | CTTTTTTTCCAGCAAACCTG+GGG | - | chr8_2:53549129-53549148 | None:intergenic | 40.0% |
| !!! | CACTTTTTTTCCAGCAAACC+TGG | - | chr8_2:53549131-53549150 | None:intergenic | 40.0% |
| TCTTTCCCTATATACTTCGC+AGG | + | chr8_2:53549383-53549402 | Msa1255140:intron | 40.0% | |
| CAAGAACCTGCGAAGTATAT+AGG | - | chr8_2:53549392-53549411 | None:intergenic | 40.0% | |
| GCCAAAGATACGCCAAATAT+TGG | - | chr8_2:53549452-53549471 | None:intergenic | 40.0% | |
| TGTAAGGAAATTAAAGGGCG+AGG | - | chr8_2:53549591-53549610 | None:intergenic | 40.0% | |
| GCAACATTGTGCCATCTTTC+AGG | - | chr8_2:53548582-53548601 | None:intergenic | 45.0% | |
| ATGGCACAATGTTGCCAAAG+TGG | + | chr8_2:53548587-53548606 | Msa1255140:CDS | 45.0% | |
| CACAATGTTGCCAAAGTGGT+TGG | + | chr8_2:53548591-53548610 | Msa1255140:CDS | 45.0% | |
| GATGTTCAACGTATTGAGCG+TGG | + | chr8_2:53548660-53548679 | Msa1255140:CDS | 45.0% | |
| GCAACATTGTGCCATCTTTC+AGG | - | chr8_2:53548582-53548601 | None:intergenic | 45.0% | |
| ATGGCACAATGTTGCCAAAG+TGG | + | chr8_2:53548587-53548606 | Msa1255140:CDS | 45.0% | |
| CACAATGTTGCCAAAGTGGT+TGG | + | chr8_2:53548591-53548610 | Msa1255140:CDS | 45.0% | |
| GATGTTCAACGTATTGAGCG+TGG | + | chr8_2:53548660-53548679 | Msa1255140:CDS | 45.0% | |
| ATAAATGGCCCCAGGTTTGC+TGG | + | chr8_2:53549118-53549137 | Msa1255140:intron | 50.0% | |
| AGAAGACTGCCGCATTCACT+TGG | - | chr8_2:53549511-53549530 | None:intergenic | 50.0% | |
| ATAAATGGCCCCAGGTTTGC+TGG | + | chr8_2:53549118-53549137 | Msa1255140:intron | 50.0% | |
| AGAAGACTGCCGCATTCACT+TGG | - | chr8_2:53549511-53549530 | None:intergenic | 50.0% | |
| TGGCAACCTCTTGGACTGCA+AGG | + | chr8_2:53548508-53548527 | Msa1255140:CDS | 55.0% | |
| GTTCTGCCTTGCAGTCCAAG+AGG | - | chr8_2:53548517-53548536 | None:intergenic | 55.0% | |
| TGCACCCTGCCAAGTGAATG+CGG | + | chr8_2:53549499-53549518 | Msa1255140:three_prime_UTR | 55.0% | |
| ACTGCCGCATTCACTTGGCA+GGG | - | chr8_2:53549506-53549525 | None:intergenic | 55.0% | |
| TGGCAACCTCTTGGACTGCA+AGG | + | chr8_2:53548508-53548527 | Msa1255140:CDS | 55.0% | |
| GTTCTGCCTTGCAGTCCAAG+AGG | - | chr8_2:53548517-53548536 | None:intergenic | 55.0% | |
| TGCACCCTGCCAAGTGAATG+CGG | + | chr8_2:53549499-53549518 | Msa1255140:three_prime_UTR | 55.0% | |
| ACTGCCGCATTCACTTGGCA+GGG | - | chr8_2:53549506-53549525 | None:intergenic | 55.0% | |
| GACTGCCGCATTCACTTGGC+AGG | - | chr8_2:53549507-53549526 | None:intergenic | 60.0% | |
| GACTGCCGCATTCACTTGGC+AGG | - | chr8_2:53549507-53549526 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 53548424 | 53549687 | 53548424 | ID=Msa1255140;Name=Msa1255140 |
| chr8_2 | mRNA | 53548424 | 53549687 | 53548424 | ID=Msa1255140-mRNA-1;Parent=Msa1255140;Name=Msa1255140-mRNA-1;_AED=0.15;_eAED=0.15;_QI=83|0|0.5|1|0|0.5|2|283|72 |
| chr8_2 | exon | 53548424 | 53548725 | 53548424 | ID=Msa1255140-mRNA-1:exon:16573;Parent=Msa1255140-mRNA-1 |
| chr8_2 | exon | 53549405 | 53549687 | 53549405 | ID=Msa1255140-mRNA-1:exon:16574;Parent=Msa1255140-mRNA-1 |
| chr8_2 | five_prime_UTR | 53548424 | 53548506 | 53548424 | ID=Msa1255140-mRNA-1:five_prime_utr;Parent=Msa1255140-mRNA-1 |
| chr8_2 | CDS | 53548507 | 53548725 | 53548507 | ID=Msa1255140-mRNA-1:cds;Parent=Msa1255140-mRNA-1 |
| chr8_2 | three_prime_UTR | 53549405 | 53549687 | 53549405 | ID=Msa1255140-mRNA-1:three_prime_utr;Parent=Msa1255140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
