Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621410 | XP_003629427.1 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 1.16e-45 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621410 | sp|F4JVB8|RADL1_ARATH | 66.154 | 65 | 21 | 1 | 5 | 68 | 14 | 78 | 1.39e-27 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621410 | G7LDY8 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 5.52e-46 | 150 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621380 | Msa0621410 | 0.869783 | 2.390240e-66 | -8.615850e-47 |
| Msa0621390 | Msa0621410 | 0.902044 | 1.449518e-78 | -8.615850e-47 |
| Msa0621400 | Msa0621410 | 0.863126 | 3.108538e-64 | -8.615850e-47 |
| Msa0621410 | Msa1255120 | 0.858124 | 1.022008e-62 | -8.615850e-47 |
| Msa0621410 | Msa1255130 | 0.887156 | 1.827001e-72 | -8.615850e-47 |
| Msa0621410 | Msa1255140 | 0.861751 | 8.232595e-64 | -8.615850e-47 |
| Msa0621410 | Msa1295570 | 0.870608 | 1.283530e-66 | -8.615850e-47 |
| Msa0621410 | Msa1295580 | 0.915818 | 3.743314e-85 | -8.615850e-47 |
| Msa0621410 | Msa1295590 | 0.886496 | 3.252722e-72 | -8.615850e-47 |
| Msa0621410 | Msa1295600 | 0.840158 | 1.028927e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621410 | MtrunA17_Chr8g0373111 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 1.06e-49 | 150 |
| Msa0621410 | MtrunA17_Chr8g0373121 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 1.06e-49 | 150 |
| Msa0621410 | MtrunA17_Chr8g0373131 | 97.222 | 72 | 2 | 0 | 1 | 72 | 1 | 72 | 3.36e-49 | 149 |
| Msa0621410 | MtrunA17_Chr5g0404301 | 82.258 | 62 | 11 | 0 | 3 | 64 | 2 | 63 | 1.06e-35 | 114 |
| Msa0621410 | MtrunA17_Chr8g0373101 | 68.571 | 70 | 21 | 1 | 1 | 70 | 1 | 69 | 3.10e-32 | 106 |
| Msa0621410 | MtrunA17_Chr3g0144631 | 64.615 | 65 | 22 | 1 | 5 | 68 | 16 | 80 | 1.12e-27 | 95.1 |
| Msa0621410 | MtrunA17_Chr1g0155181 | 55.224 | 67 | 29 | 1 | 2 | 67 | 4 | 70 | 6.04e-26 | 90.9 |
| Msa0621410 | MtrunA17_Chr6g0449111 | 57.576 | 66 | 27 | 1 | 2 | 66 | 7 | 72 | 2.73e-25 | 89.0 |
| Msa0621410 | MtrunA17_Chr5g0404101 | 54.688 | 64 | 28 | 1 | 5 | 67 | 19 | 82 | 1.38e-24 | 87.8 |
| Msa0621410 | MtrunA17_Chr3g0141601 | 55.072 | 69 | 30 | 1 | 2 | 69 | 4 | 72 | 6.39e-24 | 85.9 |
| Msa0621410 | MtrunA17_Chr3g0081631 | 55.072 | 69 | 29 | 1 | 2 | 68 | 7 | 75 | 8.47e-23 | 83.2 |
| Msa0621410 | MtrunA17_Chr7g0255841 | 59.016 | 61 | 24 | 1 | 8 | 67 | 15 | 75 | 3.53e-22 | 81.6 |
| Msa0621410 | MtrunA17_Chr5g0429521 | 54.930 | 71 | 31 | 1 | 1 | 70 | 25 | 95 | 7.70e-21 | 82.8 |
| Msa0621410 | MtrunA17_Chr3g0141641 | 55.385 | 65 | 28 | 1 | 4 | 67 | 2 | 66 | 6.53e-20 | 75.9 |
| Msa0621410 | MtrunA17_Chr3g0104071 | 54.412 | 68 | 30 | 1 | 2 | 68 | 40 | 107 | 8.68e-20 | 80.1 |
| Msa0621410 | MtrunA17_Chr7g0241761 | 51.429 | 70 | 33 | 1 | 2 | 70 | 32 | 101 | 7.15e-18 | 75.1 |
| Msa0621410 | MtrunA17_Chr8g0365011 | 43.836 | 73 | 40 | 1 | 1 | 72 | 4 | 76 | 5.99e-17 | 72.4 |
| Msa0621410 | MtrunA17_Chr5g0436501 | 50.769 | 65 | 31 | 1 | 3 | 66 | 25 | 89 | 5.16e-16 | 69.7 |
| Msa0621410 | MtrunA17_Chr1g0194071 | 47.143 | 70 | 35 | 1 | 3 | 70 | 9 | 78 | 3.30e-15 | 63.9 |
| Msa0621410 | MtrunA17_Chr7g0270711 | 50.820 | 61 | 28 | 1 | 3 | 61 | 9 | 69 | 1.29e-14 | 62.4 |
| Msa0621410 | MtrunA17_Chr1g0162081 | 38.571 | 70 | 42 | 1 | 2 | 70 | 9 | 78 | 2.60e-14 | 65.1 |
| Msa0621410 | MtrunA17_Chr8g0364741 | 37.500 | 72 | 44 | 1 | 2 | 72 | 7 | 78 | 1.87e-13 | 60.5 |
| Msa0621410 | MtrunA17_Chr1g0210471 | 40.000 | 65 | 38 | 1 | 3 | 66 | 22 | 86 | 1.32e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621410 | AT4G39250.1 | 66.154 | 65 | 21 | 1 | 5 | 68 | 14 | 78 | 1.41e-28 | 98.2 |
| Msa0621410 | AT1G75250.2 | 62.687 | 67 | 24 | 1 | 3 | 68 | 10 | 76 | 4.76e-27 | 94.4 |
| Msa0621410 | AT1G75250.1 | 64.615 | 65 | 22 | 1 | 5 | 68 | 12 | 76 | 6.58e-27 | 94.7 |
| Msa0621410 | AT2G21650.1 | 56.522 | 69 | 29 | 1 | 5 | 72 | 14 | 82 | 8.41e-26 | 91.3 |
| Msa0621410 | AT1G19510.1 | 61.290 | 62 | 23 | 1 | 8 | 68 | 15 | 76 | 7.36e-24 | 86.3 |
| Msa0621410 | AT2G18328.1 | 55.385 | 65 | 27 | 2 | 8 | 71 | 14 | 77 | 1.04e-18 | 72.8 |
| Msa0621410 | AT2G38090.1 | 51.429 | 70 | 33 | 1 | 2 | 70 | 26 | 95 | 3.22e-18 | 76.3 |
| Msa0621410 | AT5G58900.1 | 52.174 | 69 | 32 | 1 | 2 | 69 | 31 | 99 | 1.33e-17 | 74.3 |
| Msa0621410 | AT4G36570.1 | 65.909 | 44 | 14 | 1 | 5 | 47 | 12 | 55 | 6.84e-16 | 65.1 |
| Msa0621410 | AT5G05790.2 | 45.714 | 70 | 37 | 1 | 2 | 70 | 28 | 97 | 9.27e-16 | 69.3 |
| Msa0621410 | AT5G05790.1 | 45.714 | 70 | 37 | 1 | 2 | 70 | 28 | 97 | 9.27e-16 | 69.3 |
| Msa0621410 | AT3G11280.2 | 49.206 | 63 | 31 | 1 | 5 | 66 | 33 | 95 | 2.42e-15 | 68.2 |
| Msa0621410 | AT3G11280.1 | 49.206 | 63 | 31 | 1 | 5 | 66 | 33 | 95 | 2.42e-15 | 68.2 |
| Msa0621410 | AT5G08520.1 | 47.826 | 69 | 35 | 1 | 5 | 72 | 12 | 80 | 3.62e-14 | 65.1 |
| Msa0621410 | AT5G04760.1 | 43.284 | 67 | 37 | 1 | 1 | 66 | 1 | 67 | 3.29e-13 | 61.6 |
| Msa0621410 | AT5G01200.1 | 45.070 | 71 | 37 | 2 | 4 | 72 | 29 | 99 | 1.61e-12 | 60.5 |
| Msa0621410 | AT1G49010.1 | 41.429 | 70 | 37 | 2 | 1 | 66 | 4 | 73 | 5.46e-12 | 59.3 |
Find 31 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACATTGTGCCATCTTTC+AGG | 0.193556 | 4_2:-73487132 | None:intergenic |
| TATTCAAGCTTATTCGATTC+TGG | 0.224527 | 4_2:-73488154 | None:intergenic |
| TTATTGTTGGTGCAAATTTA+AGG | 0.238327 | 4_2:-73488326 | None:intergenic |
| TGAATAATATTGTTAGAAAA+AGG | 0.285820 | 4_2:-73487018 | None:intergenic |
| TTGAATAACCAACCAATATC+TGG | 0.313819 | 4_2:+73488170 | Msa0621410:three_prime_UTR |
| TAGAAAGAAAGGAAATAAAT+AGG | 0.314546 | 4_2:-73488269 | None:intergenic |
| CTGGCGTATCTATGTATCTA+TGG | 0.332880 | 4_2:+73488189 | Msa0621410:three_prime_UTR |
| TAAATACAATATCTTATTGT+TGG | 0.342543 | 4_2:-73488339 | None:intergenic |
| TACATAGATACGCCAGATAT+TGG | 0.365138 | 4_2:-73488182 | None:intergenic |
| GATTGCCACATTCACTTGGC+AGG | 0.406297 | 4_2:-73488240 | None:intergenic |
| TTCATTCATTCATCAACAAA+TGG | 0.409031 | 4_2:+73487041 | Msa0621410:exon |
| TGTAACGAGGAAAAGGGATA+TGG | 0.417505 | 4_2:-73487236 | None:intergenic |
| TACGTTGAACATCTTCTTTG+AGG | 0.435409 | 4_2:-73487203 | None:intergenic |
| ATTATTAGCTATAGAAAGAA+AGG | 0.442290 | 4_2:-73488280 | None:intergenic |
| ATCAACAAATGGCAACCTCT+TGG | 0.450563 | 4_2:+73487052 | Msa0621410:exon |
| CAAACTGTTTGAACAAGCAT+TGG | 0.467435 | 4_2:+73487089 | Msa0621410:CDS |
| TGTTGGTGCAAATTTAAGGA+AGG | 0.514031 | 4_2:-73488322 | None:intergenic |
| TAGATACGCCAGATATTGGT+TGG | 0.523803 | 4_2:-73488178 | None:intergenic |
| TACGTATATACCTTAGGAGT+TGG | 0.529338 | 4_2:-73487268 | None:intergenic |
| CACAATGTTGCCAAAGTGGT+TGG | 0.534351 | 4_2:+73487144 | Msa0621410:CDS |
| AAAAGATTGCCACATTCACT+TGG | 0.539763 | 4_2:-73488244 | None:intergenic |
| TGGCAACCTCTTGGACTGCA+AGG | 0.539984 | 4_2:+73487061 | Msa0621410:CDS |
| ATAGAGAAACTCCTGAAAGA+TGG | 0.546752 | 4_2:+73487121 | Msa0621410:CDS |
| AAAACTAATACCAACTCCTA+AGG | 0.574202 | 4_2:+73487258 | Msa0621410:CDS |
| ATTGCCACATTCACTTGGCA+GGG | 0.585703 | 4_2:-73488239 | None:intergenic |
| GTTCTGCCTTGCAGTCCAAG+AGG | 0.596751 | 4_2:-73487067 | None:intergenic |
| TGCACCCTGCCAAGTGAATG+TGG | 0.638555 | 4_2:+73488235 | Msa0621410:three_prime_UTR |
| ATGGCACAATGTTGCCAAAG+TGG | 0.642850 | 4_2:+73487140 | Msa0621410:CDS |
| AAATCAAAAGACAATGCGCA+AGG | 0.647922 | 4_2:-73488409 | None:intergenic |
| AAGGTAAAGCAACGAATACG+AGG | 0.666352 | 4_2:-73488303 | None:intergenic |
| GATGTTCAACGTATTGAGCG+TGG | 0.669371 | 4_2:+73487213 | Msa0621410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGAAAAGTTTAATTT+TGG | + | chr4_2:73488016-73488035 | Msa0621410:intron | 10.0% |
| !!! | TATTTTGAAAAGTTTAATTT+TGG | + | chr4_2:73488016-73488035 | Msa0621410:intron | 10.0% |
| !!! | TATATTTTTTAGTTAAGTGA+AGG | - | chr4_2:73486984-73487003 | None:intergenic | 15.0% |
| !! | TGAATAATATTGTTAGAAAA+AGG | - | chr4_2:73487021-73487040 | None:intergenic | 15.0% |
| !! | TATTATTATTATTAAGTGCA+CGG | - | chr4_2:73487769-73487788 | None:intergenic | 15.0% |
| !! | TAAATACAATATCTTATTGT+TGG | - | chr4_2:73488342-73488361 | None:intergenic | 15.0% |
| !!! | TATATTTTTTAGTTAAGTGA+AGG | - | chr4_2:73486984-73487003 | None:intergenic | 15.0% |
| !! | TGAATAATATTGTTAGAAAA+AGG | - | chr4_2:73487021-73487040 | None:intergenic | 15.0% |
| !! | TATTATTATTATTAAGTGCA+CGG | - | chr4_2:73487769-73487788 | None:intergenic | 15.0% |
| !! | TAAATACAATATCTTATTGT+TGG | - | chr4_2:73488342-73488361 | None:intergenic | 15.0% |
| !! | TATTGTTAGAAAAAGGAATA+AGG | - | chr4_2:73487014-73487033 | None:intergenic | 20.0% |
| !!! | TTTTTTATCTGTCATTTTCT+TGG | - | chr4_2:73487424-73487443 | None:intergenic | 20.0% |
| !! | TATAATGATCATCAAATTCA+CGG | + | chr4_2:73487444-73487463 | Msa0621410:intron | 20.0% |
| !! | ATTAAATAAGCGTATAATCA+TGG | - | chr4_2:73487562-73487581 | None:intergenic | 20.0% |
| !!! | TAGTTTTGTAACATATATTG+TGG | + | chr4_2:73487654-73487673 | Msa0621410:intron | 20.0% |
| !! | GAAAAGCTAAACATAAAATA+TGG | - | chr4_2:73487689-73487708 | None:intergenic | 20.0% |
| !! | ATTAATATAGTTTCCATCAA+AGG | - | chr4_2:73487833-73487852 | None:intergenic | 20.0% |
| !! | TTTGATGGAAACTATATTAA+TGG | + | chr4_2:73487832-73487851 | Msa0621410:intron | 20.0% |
| !! | AAGACCATTATAATTCTTAT+AGG | + | chr4_2:73487991-73488010 | Msa0621410:intron | 20.0% |
| !! | TACTCCTATAAGAATTATAA+TGG | - | chr4_2:73487998-73488017 | None:intergenic | 20.0% |
| !!! | TTGAAAAGTTTAATTTTGGT+TGG | + | chr4_2:73488020-73488039 | Msa0621410:intron | 20.0% |
| !! | CTTTGTATACATGATAATAT+CGG | + | chr4_2:73488073-73488092 | Msa0621410:intron | 20.0% |
| !! | TAGAAAGAAAGGAAATAAAT+AGG | - | chr4_2:73488272-73488291 | None:intergenic | 20.0% |
| !! | ATTATTAGCTATAGAAAGAA+AGG | - | chr4_2:73488283-73488302 | None:intergenic | 20.0% |
| !! | TATTGTTAGAAAAAGGAATA+AGG | - | chr4_2:73487014-73487033 | None:intergenic | 20.0% |
| !!! | TTTTTTATCTGTCATTTTCT+TGG | - | chr4_2:73487424-73487443 | None:intergenic | 20.0% |
| !! | TATAATGATCATCAAATTCA+CGG | + | chr4_2:73487444-73487463 | Msa0621410:intron | 20.0% |
| !! | ATTAAATAAGCGTATAATCA+TGG | - | chr4_2:73487562-73487581 | None:intergenic | 20.0% |
| !!! | TAGTTTTGTAACATATATTG+TGG | + | chr4_2:73487654-73487673 | Msa0621410:intron | 20.0% |
| !! | GAAAAGCTAAACATAAAATA+TGG | - | chr4_2:73487689-73487708 | None:intergenic | 20.0% |
| !! | ATTAATATAGTTTCCATCAA+AGG | - | chr4_2:73487833-73487852 | None:intergenic | 20.0% |
| !! | TTTGATGGAAACTATATTAA+TGG | + | chr4_2:73487832-73487851 | Msa0621410:intron | 20.0% |
| !! | AAGACCATTATAATTCTTAT+AGG | + | chr4_2:73487991-73488010 | Msa0621410:intron | 20.0% |
| !! | TACTCCTATAAGAATTATAA+TGG | - | chr4_2:73487998-73488017 | None:intergenic | 20.0% |
| !!! | TTGAAAAGTTTAATTTTGGT+TGG | + | chr4_2:73488020-73488039 | Msa0621410:intron | 20.0% |
| !! | CTTTGTATACATGATAATAT+CGG | + | chr4_2:73488073-73488092 | Msa0621410:intron | 20.0% |
| !! | TAGAAAGAAAGGAAATAAAT+AGG | - | chr4_2:73488272-73488291 | None:intergenic | 20.0% |
| !! | ATTATTAGCTATAGAAAGAA+AGG | - | chr4_2:73488283-73488302 | None:intergenic | 20.0% |
| ! | TTCATTCATTCATCAACAAA+TGG | + | chr4_2:73487041-73487060 | Msa0621410:exon | 25.0% |
| !!! | TATACATATCTTTGGTTTTC+TGG | - | chr4_2:73487608-73487627 | None:intergenic | 25.0% |
| !!! | AATAGCTATAGCACTTTTTA+GGG | - | chr4_2:73487635-73487654 | None:intergenic | 25.0% |
| !!! | TAATAGCTATAGCACTTTTT+AGG | - | chr4_2:73487636-73487655 | None:intergenic | 25.0% |
| ! | AAACATAAAATATGGAGTTC+TGG | - | chr4_2:73487681-73487700 | None:intergenic | 25.0% |
| ! | TGTGCAAAAATATTTCTCTT+TGG | - | chr4_2:73487869-73487888 | None:intergenic | 25.0% |
| !! | ATCGGCTTAATATACTAATA+AGG | + | chr4_2:73488091-73488110 | Msa0621410:intron | 25.0% |
| ! | TTATTGTTGGTGCAAATTTA+AGG | - | chr4_2:73488329-73488348 | None:intergenic | 25.0% |
| ! | TTCATTCATTCATCAACAAA+TGG | + | chr4_2:73487041-73487060 | Msa0621410:exon | 25.0% |
| !!! | TATACATATCTTTGGTTTTC+TGG | - | chr4_2:73487608-73487627 | None:intergenic | 25.0% |
| !!! | AATAGCTATAGCACTTTTTA+GGG | - | chr4_2:73487635-73487654 | None:intergenic | 25.0% |
| !!! | TAATAGCTATAGCACTTTTT+AGG | - | chr4_2:73487636-73487655 | None:intergenic | 25.0% |
| ! | AAACATAAAATATGGAGTTC+TGG | - | chr4_2:73487681-73487700 | None:intergenic | 25.0% |
| ! | TGTGCAAAAATATTTCTCTT+TGG | - | chr4_2:73487869-73487888 | None:intergenic | 25.0% |
| !! | ATCGGCTTAATATACTAATA+AGG | + | chr4_2:73488091-73488110 | Msa0621410:intron | 25.0% |
| ! | TTATTGTTGGTGCAAATTTA+AGG | - | chr4_2:73488329-73488348 | None:intergenic | 25.0% |
| GTTAGAAAAAGGAATAAGGT+TGG | - | chr4_2:73487010-73487029 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTAACGAGGAAAA+GGG | - | chr4_2:73487245-73487264 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTAACGAGGAAA+AGG | - | chr4_2:73487246-73487265 | None:intergenic | 30.0% |
| !!! | TTGGTATTAGTTTTGTAACG+AGG | - | chr4_2:73487252-73487271 | None:intergenic | 30.0% |
| AAAACTAATACCAACTCCTA+AGG | + | chr4_2:73487258-73487277 | Msa0621410:CDS | 30.0% | |
| ATGTAGTACGTATATACCTT+AGG | - | chr4_2:73487277-73487296 | None:intergenic | 30.0% | |
| AGGGACTATATACATATCTT+TGG | - | chr4_2:73487616-73487635 | None:intergenic | 30.0% | |
| !! | ATGGACAATTTTAGTAGTTG+GGG | - | chr4_2:73487732-73487751 | None:intergenic | 30.0% |
| !! | CATGGACAATTTTAGTAGTT+GGG | - | chr4_2:73487733-73487752 | None:intergenic | 30.0% |
| TATTTCTCTTTGGTTAGAGT+GGG | - | chr4_2:73487859-73487878 | None:intergenic | 30.0% | |
| ATATTTCTCTTTGGTTAGAG+TGG | - | chr4_2:73487860-73487879 | None:intergenic | 30.0% | |
| ! | ACTTTTCCTATATACTTCTC+AGG | + | chr4_2:73488118-73488137 | Msa0621410:intron | 30.0% |
| ! | CAAAAACCTGAGAAGTATAT+AGG | - | chr4_2:73488127-73488146 | None:intergenic | 30.0% |
| TATTCAAGCTTATTCGATTC+TGG | - | chr4_2:73488157-73488176 | None:intergenic | 30.0% | |
| TTGAATAACCAACCAATATC+TGG | + | chr4_2:73488170-73488189 | Msa0621410:three_prime_UTR | 30.0% | |
| GTTAGAAAAAGGAATAAGGT+TGG | - | chr4_2:73487010-73487029 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTAACGAGGAAAA+GGG | - | chr4_2:73487245-73487264 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTAACGAGGAAA+AGG | - | chr4_2:73487246-73487265 | None:intergenic | 30.0% |
| !!! | TTGGTATTAGTTTTGTAACG+AGG | - | chr4_2:73487252-73487271 | None:intergenic | 30.0% |
| AAAACTAATACCAACTCCTA+AGG | + | chr4_2:73487258-73487277 | Msa0621410:CDS | 30.0% | |
| ATGTAGTACGTATATACCTT+AGG | - | chr4_2:73487277-73487296 | None:intergenic | 30.0% | |
| AGGGACTATATACATATCTT+TGG | - | chr4_2:73487616-73487635 | None:intergenic | 30.0% | |
| !! | ATGGACAATTTTAGTAGTTG+GGG | - | chr4_2:73487732-73487751 | None:intergenic | 30.0% |
| !! | CATGGACAATTTTAGTAGTT+GGG | - | chr4_2:73487733-73487752 | None:intergenic | 30.0% |
| TATTTCTCTTTGGTTAGAGT+GGG | - | chr4_2:73487859-73487878 | None:intergenic | 30.0% | |
| ATATTTCTCTTTGGTTAGAG+TGG | - | chr4_2:73487860-73487879 | None:intergenic | 30.0% | |
| ! | ACTTTTCCTATATACTTCTC+AGG | + | chr4_2:73488118-73488137 | Msa0621410:intron | 30.0% |
| ! | CAAAAACCTGAGAAGTATAT+AGG | - | chr4_2:73488127-73488146 | None:intergenic | 30.0% |
| TATTCAAGCTTATTCGATTC+TGG | - | chr4_2:73488157-73488176 | None:intergenic | 30.0% | |
| TTGAATAACCAACCAATATC+TGG | + | chr4_2:73488170-73488189 | Msa0621410:three_prime_UTR | 30.0% | |
| CAAACTGTTTGAACAAGCAT+TGG | + | chr4_2:73487089-73487108 | Msa0621410:CDS | 35.0% | |
| ATAGAGAAACTCCTGAAAGA+TGG | + | chr4_2:73487121-73487140 | Msa0621410:CDS | 35.0% | |
| !! | AACTGATTTTCCAACCACTT+TGG | - | chr4_2:73487157-73487176 | None:intergenic | 35.0% |
| TACGTTGAACATCTTCTTTG+AGG | - | chr4_2:73487206-73487225 | None:intergenic | 35.0% | |
| TACGTATATACCTTAGGAGT+TGG | - | chr4_2:73487271-73487290 | None:intergenic | 35.0% | |
| CTTTGGTTAACATGTTCTTG+AGG | + | chr4_2:73487327-73487346 | Msa0621410:intron | 35.0% | |
| !! | TGGACAATTTTAGTAGTTGG+GGG | - | chr4_2:73487731-73487750 | None:intergenic | 35.0% |
| !! | GCATGGACAATTTTAGTAGT+TGG | - | chr4_2:73487734-73487753 | None:intergenic | 35.0% |
| ATCAAAGGACAAGATAGGAT+AGG | - | chr4_2:73487818-73487837 | None:intergenic | 35.0% | |
| TATCCTATCTTGTCCTTTGA+TGG | + | chr4_2:73487817-73487836 | Msa0621410:intron | 35.0% | |
| TTTCCATCAAAGGACAAGAT+AGG | - | chr4_2:73487823-73487842 | None:intergenic | 35.0% | |
| ATTTCTCTTTGGTTAGAGTG+GGG | - | chr4_2:73487858-73487877 | None:intergenic | 35.0% | |
| TACATAGATACGCCAGATAT+TGG | - | chr4_2:73488185-73488204 | None:intergenic | 35.0% | |
| AAAAGATTGCCACATTCACT+TGG | - | chr4_2:73488247-73488266 | None:intergenic | 35.0% | |
| TGTTGGTGCAAATTTAAGGA+AGG | - | chr4_2:73488325-73488344 | None:intergenic | 35.0% | |
| CAAACTGTTTGAACAAGCAT+TGG | + | chr4_2:73487089-73487108 | Msa0621410:CDS | 35.0% | |
| ATAGAGAAACTCCTGAAAGA+TGG | + | chr4_2:73487121-73487140 | Msa0621410:CDS | 35.0% | |
| !! | AACTGATTTTCCAACCACTT+TGG | - | chr4_2:73487157-73487176 | None:intergenic | 35.0% |
| TACGTTGAACATCTTCTTTG+AGG | - | chr4_2:73487206-73487225 | None:intergenic | 35.0% | |
| TACGTATATACCTTAGGAGT+TGG | - | chr4_2:73487271-73487290 | None:intergenic | 35.0% | |
| CTTTGGTTAACATGTTCTTG+AGG | + | chr4_2:73487327-73487346 | Msa0621410:intron | 35.0% | |
| !! | TGGACAATTTTAGTAGTTGG+GGG | - | chr4_2:73487731-73487750 | None:intergenic | 35.0% |
| !! | GCATGGACAATTTTAGTAGT+TGG | - | chr4_2:73487734-73487753 | None:intergenic | 35.0% |
| ATCAAAGGACAAGATAGGAT+AGG | - | chr4_2:73487818-73487837 | None:intergenic | 35.0% | |
| TATCCTATCTTGTCCTTTGA+TGG | + | chr4_2:73487817-73487836 | Msa0621410:intron | 35.0% | |
| TTTCCATCAAAGGACAAGAT+AGG | - | chr4_2:73487823-73487842 | None:intergenic | 35.0% | |
| ATTTCTCTTTGGTTAGAGTG+GGG | - | chr4_2:73487858-73487877 | None:intergenic | 35.0% | |
| TACATAGATACGCCAGATAT+TGG | - | chr4_2:73488185-73488204 | None:intergenic | 35.0% | |
| AAAAGATTGCCACATTCACT+TGG | - | chr4_2:73488247-73488266 | None:intergenic | 35.0% | |
| TGTTGGTGCAAATTTAAGGA+AGG | - | chr4_2:73488325-73488344 | None:intergenic | 35.0% | |
| ATCAACAAATGGCAACCTCT+TGG | + | chr4_2:73487052-73487071 | Msa0621410:exon | 40.0% | |
| TGTAACGAGGAAAAGGGATA+TGG | - | chr4_2:73487239-73487258 | None:intergenic | 40.0% | |
| ! | TGTTAACCAAAGAGCATGCA+TGG | - | chr4_2:73487319-73487338 | None:intergenic | 40.0% |
| TAGATACGCCAGATATTGGT+TGG | - | chr4_2:73488181-73488200 | None:intergenic | 40.0% | |
| CTGGCGTATCTATGTATCTA+TGG | + | chr4_2:73488189-73488208 | Msa0621410:three_prime_UTR | 40.0% | |
| AAGGTAAAGCAACGAATACG+AGG | - | chr4_2:73488306-73488325 | None:intergenic | 40.0% | |
| ATCAACAAATGGCAACCTCT+TGG | + | chr4_2:73487052-73487071 | Msa0621410:exon | 40.0% | |
| TGTAACGAGGAAAAGGGATA+TGG | - | chr4_2:73487239-73487258 | None:intergenic | 40.0% | |
| ! | TGTTAACCAAAGAGCATGCA+TGG | - | chr4_2:73487319-73487338 | None:intergenic | 40.0% |
| TAGATACGCCAGATATTGGT+TGG | - | chr4_2:73488181-73488200 | None:intergenic | 40.0% | |
| CTGGCGTATCTATGTATCTA+TGG | + | chr4_2:73488189-73488208 | Msa0621410:three_prime_UTR | 40.0% | |
| AAGGTAAAGCAACGAATACG+AGG | - | chr4_2:73488306-73488325 | None:intergenic | 40.0% | |
| GCAACATTGTGCCATCTTTC+AGG | - | chr4_2:73487135-73487154 | None:intergenic | 45.0% | |
| ATGGCACAATGTTGCCAAAG+TGG | + | chr4_2:73487140-73487159 | Msa0621410:CDS | 45.0% | |
| CACAATGTTGCCAAAGTGGT+TGG | + | chr4_2:73487144-73487163 | Msa0621410:CDS | 45.0% | |
| GATGTTCAACGTATTGAGCG+TGG | + | chr4_2:73487213-73487232 | Msa0621410:CDS | 45.0% | |
| ! | AAGAGCATGCATGGTCACTA+GGG | - | chr4_2:73487310-73487329 | None:intergenic | 45.0% |
| ! | AAAGAGCATGCATGGTCACT+AGG | - | chr4_2:73487311-73487330 | None:intergenic | 45.0% |
| TAGTGACCATGCATGCTCTT+TGG | + | chr4_2:73487310-73487329 | Msa0621410:intron | 45.0% | |
| ATTGCCACATTCACTTGGCA+GGG | - | chr4_2:73488242-73488261 | None:intergenic | 45.0% | |
| GCAACATTGTGCCATCTTTC+AGG | - | chr4_2:73487135-73487154 | None:intergenic | 45.0% | |
| ATGGCACAATGTTGCCAAAG+TGG | + | chr4_2:73487140-73487159 | Msa0621410:CDS | 45.0% | |
| CACAATGTTGCCAAAGTGGT+TGG | + | chr4_2:73487144-73487163 | Msa0621410:CDS | 45.0% | |
| GATGTTCAACGTATTGAGCG+TGG | + | chr4_2:73487213-73487232 | Msa0621410:CDS | 45.0% | |
| ! | AAGAGCATGCATGGTCACTA+GGG | - | chr4_2:73487310-73487329 | None:intergenic | 45.0% |
| ! | AAAGAGCATGCATGGTCACT+AGG | - | chr4_2:73487311-73487330 | None:intergenic | 45.0% |
| TAGTGACCATGCATGCTCTT+TGG | + | chr4_2:73487310-73487329 | Msa0621410:intron | 45.0% | |
| ATTGCCACATTCACTTGGCA+GGG | - | chr4_2:73488242-73488261 | None:intergenic | 45.0% | |
| TAGTTGGGGGAACAAGACAG+TGG | - | chr4_2:73487718-73487737 | None:intergenic | 50.0% | |
| CACGGAAAAGTCACAGTGCA+TGG | - | chr4_2:73487751-73487770 | None:intergenic | 50.0% | |
| GATTGCCACATTCACTTGGC+AGG | - | chr4_2:73488243-73488262 | None:intergenic | 50.0% | |
| TAGTTGGGGGAACAAGACAG+TGG | - | chr4_2:73487718-73487737 | None:intergenic | 50.0% | |
| CACGGAAAAGTCACAGTGCA+TGG | - | chr4_2:73487751-73487770 | None:intergenic | 50.0% | |
| GATTGCCACATTCACTTGGC+AGG | - | chr4_2:73488243-73488262 | None:intergenic | 50.0% | |
| TGGCAACCTCTTGGACTGCA+AGG | + | chr4_2:73487061-73487080 | Msa0621410:CDS | 55.0% | |
| GTTCTGCCTTGCAGTCCAAG+AGG | - | chr4_2:73487070-73487089 | None:intergenic | 55.0% | |
| TGCACCCTGCCAAGTGAATG+TGG | + | chr4_2:73488235-73488254 | Msa0621410:three_prime_UTR | 55.0% | |
| TGGCAACCTCTTGGACTGCA+AGG | + | chr4_2:73487061-73487080 | Msa0621410:CDS | 55.0% | |
| GTTCTGCCTTGCAGTCCAAG+AGG | - | chr4_2:73487070-73487089 | None:intergenic | 55.0% | |
| TGCACCCTGCCAAGTGAATG+TGG | + | chr4_2:73488235-73488254 | Msa0621410:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 73486978 | 73488416 | 73486978 | ID=Msa0621410;Name=Msa0621410 |
| chr4_2 | mRNA | 73486978 | 73488416 | 73486978 | ID=Msa0621410-mRNA-1;Parent=Msa0621410;Name=Msa0621410-mRNA-1;_AED=0.36;_eAED=0.36;_QI=82|0|0.5|1|0|0.5|2|277|72 |
| chr4_2 | exon | 73486978 | 73487278 | 73486978 | ID=Msa0621410-mRNA-1:exon:22068;Parent=Msa0621410-mRNA-1 |
| chr4_2 | exon | 73488140 | 73488416 | 73488140 | ID=Msa0621410-mRNA-1:exon:22069;Parent=Msa0621410-mRNA-1 |
| chr4_2 | five_prime_UTR | 73486978 | 73487059 | 73486978 | ID=Msa0621410-mRNA-1:five_prime_utr;Parent=Msa0621410-mRNA-1 |
| chr4_2 | CDS | 73487060 | 73487278 | 73487060 | ID=Msa0621410-mRNA-1:cds;Parent=Msa0621410-mRNA-1 |
| chr4_2 | three_prime_UTR | 73488140 | 73488416 | 73488140 | ID=Msa0621410-mRNA-1:three_prime_utr;Parent=Msa0621410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
