Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295580 | sp|F4JVB8|RADL1_ARATH | 66.154 | 65 | 21 | 1 | 5 | 68 | 14 | 78 | 1.39e-27 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295580 | G7LDY8 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 5.52e-46 | 150 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000220 | Msa1295580 | 0.823744 | 1.174695e-53 | -8.615850e-47 |
| Msa0094670 | Msa1295580 | 0.804780 | 1.833007e-49 | -8.615850e-47 |
| Msa0101150 | Msa1295580 | 0.805899 | 1.068336e-49 | -8.615850e-47 |
| Msa0101210 | Msa1295580 | 0.809284 | 2.041855e-50 | -8.615850e-47 |
| Msa0621380 | Msa1295580 | 0.936962 | 7.481437e-98 | -8.615850e-47 |
| Msa0621390 | Msa1295580 | 0.979283 | 1.248397e-147 | -8.615850e-47 |
| Msa0621400 | Msa1295580 | 0.840343 | 9.204624e-58 | -8.615850e-47 |
| Msa0621410 | Msa1295580 | 0.915818 | 3.743314e-85 | -8.615850e-47 |
| Msa0683650 | Msa1295580 | 0.809207 | 2.120315e-50 | -8.615850e-47 |
| Msa0730180 | Msa1295580 | 0.808186 | 3.504359e-50 | -8.615850e-47 |
| Msa0753530 | Msa1295580 | 0.804437 | 2.160959e-49 | -8.615850e-47 |
| Msa0757990 | Msa1295580 | -0.804470 | 2.126984e-49 | -8.615850e-47 |
| Msa0808420 | Msa1295580 | 0.801826 | 7.497920e-49 | -8.615850e-47 |
| Msa0829570 | Msa1295580 | 0.806858 | 6.706534e-50 | -8.615850e-47 |
| Msa0131390 | Msa1295580 | 0.817741 | 2.818087e-52 | -8.615850e-47 |
| Msa0177490 | Msa1295580 | 0.818356 | 2.045415e-52 | -8.615850e-47 |
| Msa0217470 | Msa1295580 | 0.816073 | 6.672219e-52 | -8.615850e-47 |
| Msa1243860 | Msa1295580 | 0.809969 | 1.454529e-50 | -8.615850e-47 |
| Msa1255120 | Msa1295580 | 0.916692 | 1.311086e-85 | -8.615850e-47 |
| Msa1255130 | Msa1295580 | 0.890828 | 6.919030e-74 | -8.615850e-47 |
| Msa1255140 | Msa1295580 | 0.865699 | 4.884434e-65 | -8.615850e-47 |
| Msa1258770 | Msa1295580 | 0.813533 | 2.439106e-51 | -8.615850e-47 |
| Msa1295570 | Msa1295580 | 0.928267 | 3.676385e-92 | -8.615850e-47 |
| Msa1295580 | Msa1295590 | 0.875079 | 4.086546e-68 | -8.615850e-47 |
| Msa1295580 | Msa1295600 | 0.851598 | 7.995271e-61 | -8.615850e-47 |
| Msa1295580 | Msa1330280 | 0.829672 | 4.516333e-55 | -8.615850e-47 |
| Msa1295580 | Msa1344940 | 0.813808 | 2.121633e-51 | -8.615850e-47 |
| Msa1295580 | Msa1369900 | 0.823133 | 1.631772e-53 | -8.615850e-47 |
| Msa1295580 | Msa1435910 | 0.801380 | 9.251921e-49 | -8.615850e-47 |
| Msa0403670 | Msa1295580 | 0.827047 | 1.941254e-54 | -8.615850e-47 |
| Msa0405040 | Msa1295580 | 0.822693 | 2.066956e-53 | -8.615850e-47 |
| Msa0446480 | Msa1295580 | 0.801353 | 9.371799e-49 | -8.615850e-47 |
| Msa1000470 | Msa1295580 | 0.816070 | 6.682568e-52 | -8.615850e-47 |
| Msa1033160 | Msa1295580 | 0.801864 | 7.364174e-49 | -8.615850e-47 |
| Msa1161160 | Msa1295580 | 0.811114 | 8.231644e-51 | -8.615850e-47 |
| Msa1214900 | Msa1295580 | 0.825334 | 4.959608e-54 | -8.615850e-47 |
| Msa0498320 | Msa1295580 | 0.819991 | 8.680907e-53 | -8.615850e-47 |
| Msa0512130 | Msa1295580 | 0.800367 | 1.489864e-48 | -8.615850e-47 |
| Msa0524510 | Msa1295580 | 0.800996 | 1.108922e-48 | -8.615850e-47 |
| Msa0547780 | Msa1295580 | 0.802193 | 6.301293e-49 | -8.615850e-47 |
| Msa0846180 | Msa1295580 | 0.800847 | 1.189547e-48 | -8.615850e-47 |
| Msa0875130 | Msa1295580 | 0.810982 | 8.791575e-51 | -8.615850e-47 |
| Msa0881050 | Msa1295580 | 0.803328 | 3.673254e-49 | -8.615850e-47 |
| Msa0931730 | Msa1295580 | 0.801821 | 7.514181e-49 | -8.615850e-47 |
| Msa0968450 | Msa1295580 | 0.816632 | 5.003342e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295580 | MtrunA17_Chr8g0373111 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 1.06e-49 | 150 |
| Msa1295580 | MtrunA17_Chr8g0373121 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 1.06e-49 | 150 |
| Msa1295580 | MtrunA17_Chr8g0373131 | 97.222 | 72 | 2 | 0 | 1 | 72 | 1 | 72 | 3.36e-49 | 149 |
| Msa1295580 | MtrunA17_Chr5g0404301 | 82.258 | 62 | 11 | 0 | 3 | 64 | 2 | 63 | 1.06e-35 | 114 |
| Msa1295580 | MtrunA17_Chr8g0373101 | 68.571 | 70 | 21 | 1 | 1 | 70 | 1 | 69 | 3.10e-32 | 106 |
| Msa1295580 | MtrunA17_Chr3g0144631 | 64.615 | 65 | 22 | 1 | 5 | 68 | 16 | 80 | 1.12e-27 | 95.1 |
| Msa1295580 | MtrunA17_Chr1g0155181 | 55.224 | 67 | 29 | 1 | 2 | 67 | 4 | 70 | 6.04e-26 | 90.9 |
| Msa1295580 | MtrunA17_Chr6g0449111 | 57.576 | 66 | 27 | 1 | 2 | 66 | 7 | 72 | 2.73e-25 | 89.0 |
| Msa1295580 | MtrunA17_Chr5g0404101 | 54.688 | 64 | 28 | 1 | 5 | 67 | 19 | 82 | 1.38e-24 | 87.8 |
| Msa1295580 | MtrunA17_Chr3g0141601 | 55.072 | 69 | 30 | 1 | 2 | 69 | 4 | 72 | 6.39e-24 | 85.9 |
| Msa1295580 | MtrunA17_Chr3g0081631 | 55.072 | 69 | 29 | 1 | 2 | 68 | 7 | 75 | 8.47e-23 | 83.2 |
| Msa1295580 | MtrunA17_Chr7g0255841 | 59.016 | 61 | 24 | 1 | 8 | 67 | 15 | 75 | 3.53e-22 | 81.6 |
| Msa1295580 | MtrunA17_Chr5g0429521 | 54.930 | 71 | 31 | 1 | 1 | 70 | 25 | 95 | 7.70e-21 | 82.8 |
| Msa1295580 | MtrunA17_Chr3g0141641 | 55.385 | 65 | 28 | 1 | 4 | 67 | 2 | 66 | 6.53e-20 | 75.9 |
| Msa1295580 | MtrunA17_Chr3g0104071 | 54.412 | 68 | 30 | 1 | 2 | 68 | 40 | 107 | 8.68e-20 | 80.1 |
| Msa1295580 | MtrunA17_Chr7g0241761 | 51.429 | 70 | 33 | 1 | 2 | 70 | 32 | 101 | 7.15e-18 | 75.1 |
| Msa1295580 | MtrunA17_Chr8g0365011 | 43.836 | 73 | 40 | 1 | 1 | 72 | 4 | 76 | 5.99e-17 | 72.4 |
| Msa1295580 | MtrunA17_Chr5g0436501 | 50.769 | 65 | 31 | 1 | 3 | 66 | 25 | 89 | 5.16e-16 | 69.7 |
| Msa1295580 | MtrunA17_Chr1g0194071 | 47.143 | 70 | 35 | 1 | 3 | 70 | 9 | 78 | 3.30e-15 | 63.9 |
| Msa1295580 | MtrunA17_Chr7g0270711 | 50.820 | 61 | 28 | 1 | 3 | 61 | 9 | 69 | 1.29e-14 | 62.4 |
| Msa1295580 | MtrunA17_Chr1g0162081 | 38.571 | 70 | 42 | 1 | 2 | 70 | 9 | 78 | 2.60e-14 | 65.1 |
| Msa1295580 | MtrunA17_Chr8g0364741 | 37.500 | 72 | 44 | 1 | 2 | 72 | 7 | 78 | 1.87e-13 | 60.5 |
| Msa1295580 | MtrunA17_Chr1g0210471 | 40.000 | 65 | 38 | 1 | 3 | 66 | 22 | 86 | 1.32e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295580 | AT4G39250.1 | 66.154 | 65 | 21 | 1 | 5 | 68 | 14 | 78 | 1.41e-28 | 98.2 |
| Msa1295580 | AT1G75250.2 | 62.687 | 67 | 24 | 1 | 3 | 68 | 10 | 76 | 4.76e-27 | 94.4 |
| Msa1295580 | AT1G75250.1 | 64.615 | 65 | 22 | 1 | 5 | 68 | 12 | 76 | 6.58e-27 | 94.7 |
| Msa1295580 | AT2G21650.1 | 56.522 | 69 | 29 | 1 | 5 | 72 | 14 | 82 | 8.41e-26 | 91.3 |
| Msa1295580 | AT1G19510.1 | 61.290 | 62 | 23 | 1 | 8 | 68 | 15 | 76 | 7.36e-24 | 86.3 |
| Msa1295580 | AT2G18328.1 | 55.385 | 65 | 27 | 2 | 8 | 71 | 14 | 77 | 1.04e-18 | 72.8 |
| Msa1295580 | AT2G38090.1 | 51.429 | 70 | 33 | 1 | 2 | 70 | 26 | 95 | 3.22e-18 | 76.3 |
| Msa1295580 | AT5G58900.1 | 52.174 | 69 | 32 | 1 | 2 | 69 | 31 | 99 | 1.33e-17 | 74.3 |
| Msa1295580 | AT4G36570.1 | 65.909 | 44 | 14 | 1 | 5 | 47 | 12 | 55 | 6.84e-16 | 65.1 |
| Msa1295580 | AT5G05790.2 | 45.714 | 70 | 37 | 1 | 2 | 70 | 28 | 97 | 9.27e-16 | 69.3 |
| Msa1295580 | AT5G05790.1 | 45.714 | 70 | 37 | 1 | 2 | 70 | 28 | 97 | 9.27e-16 | 69.3 |
| Msa1295580 | AT3G11280.2 | 49.206 | 63 | 31 | 1 | 5 | 66 | 33 | 95 | 2.42e-15 | 68.2 |
| Msa1295580 | AT3G11280.1 | 49.206 | 63 | 31 | 1 | 5 | 66 | 33 | 95 | 2.42e-15 | 68.2 |
| Msa1295580 | AT5G08520.1 | 47.826 | 69 | 35 | 1 | 5 | 72 | 12 | 80 | 3.62e-14 | 65.1 |
| Msa1295580 | AT5G04760.1 | 43.284 | 67 | 37 | 1 | 1 | 66 | 1 | 67 | 3.29e-13 | 61.6 |
| Msa1295580 | AT5G01200.1 | 45.070 | 71 | 37 | 2 | 4 | 72 | 29 | 99 | 1.61e-12 | 60.5 |
| Msa1295580 | AT1G49010.1 | 41.429 | 70 | 37 | 2 | 1 | 66 | 4 | 73 | 5.46e-12 | 59.3 |
Find 26 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACATTGTGCCATCTTTC+AGG | 0.193556 | 8_3:-53729835 | None:intergenic |
| GTACAGTGTAAGGAAATTAA+AGG | 0.280704 | 8_3:-53731538 | None:intergenic |
| CAAGCTTAATTATTGTGTTC+TGG | 0.297492 | 8_3:-53731340 | None:intergenic |
| AATGCATACTAGTGTATCTT+TGG | 0.359894 | 8_3:+53731402 | Msa1295580:three_prime_UTR |
| ATTAAAGATACGTCAAATAC+TGG | 0.365763 | 8_3:-53731372 | None:intergenic |
| ATAGAAAGAAATTAATATAT+AGG | 0.371156 | 8_3:-53731482 | None:intergenic |
| TTCATTCATTCATCAACAAA+TGG | 0.409031 | 8_3:+53729744 | Msa1295580:exon |
| TGTAACGAGGAAAAGGGATA+TGG | 0.417505 | 8_3:-53729939 | None:intergenic |
| TACGTTGAACATCTTCTTTG+AGG | 0.435409 | 8_3:-53729906 | None:intergenic |
| ATCAACAAATGGCAACCTCT+TGG | 0.450563 | 8_3:+53729755 | Msa1295580:exon |
| CAAACTGTTTGAACAAGCAT+TGG | 0.467435 | 8_3:+53729792 | Msa1295580:CDS |
| TCATTATTGTAAGTTTATGA+AGG | 0.469922 | 8_3:+53731595 | Msa1295580:three_prime_UTR |
| TACAGTGTAAGGAAATTAAA+GGG | 0.482580 | 8_3:-53731537 | None:intergenic |
| CACAATGTTGCCAAAGTGGT+TGG | 0.534351 | 8_3:+53729847 | Msa1295580:CDS |
| TGGCAACCTCTTGGACTGCA+AGG | 0.539984 | 8_3:+53729764 | Msa1295580:CDS |
| ATAGAGAAACTCCTGAAAGA+TGG | 0.546752 | 8_3:+53729824 | Msa1295580:CDS |
| AAAACTAACACCAACTCCTA+AGG | 0.547909 | 8_3:+53729961 | Msa1295580:CDS |
| AAGATACGTCAAATACTGGT+TGG | 0.552145 | 8_3:-53731368 | None:intergenic |
| AGAAGAGTGCCACATTCACT+TGG | 0.560492 | 8_3:-53731457 | None:intergenic |
| ATATATTATACCTTAGGAGT+TGG | 0.560505 | 8_3:-53729971 | None:intergenic |
| TGTAAGGAAATTAAAGGGCG+AGG | 0.564312 | 8_3:-53731532 | None:intergenic |
| GTTCTGCCTTGCAGTCCAAG+AGG | 0.596751 | 8_3:-53729770 | None:intergenic |
| AGTGCCACATTCACTTGGCA+AGG | 0.606187 | 8_3:-53731452 | None:intergenic |
| ATGGCACAATGTTGCCAAAG+TGG | 0.642850 | 8_3:+53729843 | Msa1295580:CDS |
| TGCACCTTGCCAAGTGAATG+TGG | 0.653689 | 8_3:+53731448 | Msa1295580:three_prime_UTR |
| GATGTTCAACGTATTGAGCG+TGG | 0.669371 | 8_3:+53729916 | Msa1295580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAGTGTTTAATATATT+AGG | - | chr8_3:53730119-53730138 | None:intergenic | 10.0% |
| !!! | TTAATTGAGATTTTATATTA+TGG | - | chr8_3:53730636-53730655 | None:intergenic | 10.0% |
| !!! | ATATGTTTAATTTTTTTCTT+AGG | + | chr8_3:53730812-53730831 | Msa1295580:intron | 10.0% |
| !! | ATATTATATAGTTTATTCAA+TGG | - | chr8_3:53730952-53730971 | None:intergenic | 10.0% |
| !! | AATAAACTATATAATATCAA+TGG | + | chr8_3:53730955-53730974 | Msa1295580:intron | 10.0% |
| !!! | ATAATAAGTATTTGAAATTT+TGG | + | chr8_3:53731211-53731230 | Msa1295580:intron | 10.0% |
| !!! | TAATAAGTATTTGAAATTTT+GGG | + | chr8_3:53731212-53731231 | Msa1295580:intron | 10.0% |
| !! | ATAGAAAGAAATTAATATAT+AGG | - | chr8_3:53731485-53731504 | None:intergenic | 10.0% |
| !!! | TAAATGCAATATTTTATTTT+TGG | - | chr8_3:53731563-53731582 | None:intergenic | 10.0% |
| !! | ATATAAGTGTTTAATATATT+AGG | - | chr8_3:53730119-53730138 | None:intergenic | 10.0% |
| !!! | TTAATTGAGATTTTATATTA+TGG | - | chr8_3:53730636-53730655 | None:intergenic | 10.0% |
| !!! | ATATGTTTAATTTTTTTCTT+AGG | + | chr8_3:53730812-53730831 | Msa1295580:intron | 10.0% |
| !! | ATATTATATAGTTTATTCAA+TGG | - | chr8_3:53730952-53730971 | None:intergenic | 10.0% |
| !! | AATAAACTATATAATATCAA+TGG | + | chr8_3:53730955-53730974 | Msa1295580:intron | 10.0% |
| !!! | ATAATAAGTATTTGAAATTT+TGG | + | chr8_3:53731211-53731230 | Msa1295580:intron | 10.0% |
| !!! | TAATAAGTATTTGAAATTTT+GGG | + | chr8_3:53731212-53731231 | Msa1295580:intron | 10.0% |
| !! | ATAGAAAGAAATTAATATAT+AGG | - | chr8_3:53731485-53731504 | None:intergenic | 10.0% |
| !!! | TAAATGCAATATTTTATTTT+TGG | - | chr8_3:53731563-53731582 | None:intergenic | 10.0% |
| !!! | TTAAATTAGTATGTTTTTGA+GGG | + | chr8_3:53730032-53730051 | Msa1295580:intron | 15.0% |
| !! | TAATATCTAATTAAGTTTAG+CGG | - | chr8_3:53730093-53730112 | None:intergenic | 15.0% |
| !!! | TTTAAGTTAAACTTAGTTTA+GGG | - | chr8_3:53730148-53730167 | None:intergenic | 15.0% |
| !!! | ATTTAAGTTAAACTTAGTTT+AGG | - | chr8_3:53730149-53730168 | None:intergenic | 15.0% |
| !! | TATTATCTTTACAAACATAT+AGG | + | chr8_3:53730351-53730370 | Msa1295580:intron | 15.0% |
| !!! | TTAAATTAGTATGTTTTTGA+GGG | + | chr8_3:53730032-53730051 | Msa1295580:intron | 15.0% |
| !! | TAATATCTAATTAAGTTTAG+CGG | - | chr8_3:53730093-53730112 | None:intergenic | 15.0% |
| !!! | TTTAAGTTAAACTTAGTTTA+GGG | - | chr8_3:53730148-53730167 | None:intergenic | 15.0% |
| !!! | ATTTAAGTTAAACTTAGTTT+AGG | - | chr8_3:53730149-53730168 | None:intergenic | 15.0% |
| !! | TATTATCTTTACAAACATAT+AGG | + | chr8_3:53730351-53730370 | Msa1295580:intron | 15.0% |
| !! | TATTGTCAGAAAAAAGAATA+AGG | - | chr8_3:53729717-53729736 | None:intergenic | 20.0% |
| !! | AACATACTAATTTAAGAACA+TGG | - | chr8_3:53730027-53730046 | None:intergenic | 20.0% |
| !!! | CTTAAATTAGTATGTTTTTG+AGG | + | chr8_3:53730031-53730050 | Msa1295580:intron | 20.0% |
| !! | TTAAGTTAAACTTAGTTTAG+GGG | - | chr8_3:53730147-53730166 | None:intergenic | 20.0% |
| !!! | TTAAATTAGCCTACTTAAAT+TGG | - | chr8_3:53730267-53730286 | None:intergenic | 20.0% |
| !! | CACAAAAGTTGTTAAAAAAA+TGG | - | chr8_3:53730451-53730470 | None:intergenic | 20.0% |
| !!! | TACAAAGAAATTTTAAGTAG+TGG | - | chr8_3:53730537-53730556 | None:intergenic | 20.0% |
| !!! | AGTTATTAGTTTTATATACG+TGG | + | chr8_3:53730762-53730781 | Msa1295580:intron | 20.0% |
| !!! | TTATAAAGTTGTTTTTGAAG+AGG | - | chr8_3:53731135-53731154 | None:intergenic | 20.0% |
| !!! | TTTTTTCGGTATAAAATTGA+TGG | - | chr8_3:53731162-53731181 | None:intergenic | 20.0% |
| !!! | TTCTTTGCTTCTTTTTTTTT+CGG | - | chr8_3:53731176-53731195 | None:intergenic | 20.0% |
| !! | TCATTATTGTAAGTTTATGA+AGG | + | chr8_3:53731595-53731614 | Msa1295580:three_prime_UTR | 20.0% |
| !! | TATTGTCAGAAAAAAGAATA+AGG | - | chr8_3:53729717-53729736 | None:intergenic | 20.0% |
| !! | AACATACTAATTTAAGAACA+TGG | - | chr8_3:53730027-53730046 | None:intergenic | 20.0% |
| !!! | CTTAAATTAGTATGTTTTTG+AGG | + | chr8_3:53730031-53730050 | Msa1295580:intron | 20.0% |
| !! | TTAAGTTAAACTTAGTTTAG+GGG | - | chr8_3:53730147-53730166 | None:intergenic | 20.0% |
| !!! | TTAAATTAGCCTACTTAAAT+TGG | - | chr8_3:53730267-53730286 | None:intergenic | 20.0% |
| !! | CACAAAAGTTGTTAAAAAAA+TGG | - | chr8_3:53730451-53730470 | None:intergenic | 20.0% |
| !!! | TACAAAGAAATTTTAAGTAG+TGG | - | chr8_3:53730537-53730556 | None:intergenic | 20.0% |
| !!! | AGTTATTAGTTTTATATACG+TGG | + | chr8_3:53730762-53730781 | Msa1295580:intron | 20.0% |
| !!! | TTATAAAGTTGTTTTTGAAG+AGG | - | chr8_3:53731135-53731154 | None:intergenic | 20.0% |
| !!! | TTTTTTCGGTATAAAATTGA+TGG | - | chr8_3:53731162-53731181 | None:intergenic | 20.0% |
| !!! | TTCTTTGCTTCTTTTTTTTT+CGG | - | chr8_3:53731176-53731195 | None:intergenic | 20.0% |
| !! | TCATTATTGTAAGTTTATGA+AGG | + | chr8_3:53731595-53731614 | Msa1295580:three_prime_UTR | 20.0% |
| ! | TTCATTCATTCATCAACAAA+TGG | + | chr8_3:53729744-53729763 | Msa1295580:exon | 25.0% |
| ! | ATATATTATACCTTAGGAGT+TGG | - | chr8_3:53729974-53729993 | None:intergenic | 25.0% |
| ! | CAGTACATATATTATACCTT+AGG | - | chr8_3:53729980-53729999 | None:intergenic | 25.0% |
| ! | TGATTATTCTGCACAATTTA+GGG | - | chr8_3:53730379-53730398 | None:intergenic | 25.0% |
| ! | TTGATTATTCTGCACAATTT+AGG | - | chr8_3:53730380-53730399 | None:intergenic | 25.0% |
| ! | ATATCATTTCTCTTATGAGA+TGG | - | chr8_3:53730420-53730439 | None:intergenic | 25.0% |
| !!! | TGTTTTTACTTTCTCTCTAT+TGG | + | chr8_3:53730498-53730517 | Msa1295580:intron | 25.0% |
| ! | CAAAAAATTGTCTCAACAAA+GGG | + | chr8_3:53730570-53730589 | Msa1295580:intron | 25.0% |
| ! | AATTCTTATCCCATTCAATA+TGG | - | chr8_3:53730709-53730728 | None:intergenic | 25.0% |
| ! | TATTGAATGGGATAAGAATT+TGG | + | chr8_3:53730709-53730728 | Msa1295580:intron | 25.0% |
| ! | ATTGAATGGGATAAGAATTT+GGG | + | chr8_3:53730710-53730729 | Msa1295580:intron | 25.0% |
| ! | GTTTATTCAATGGACAATAT+AGG | - | chr8_3:53730942-53730961 | None:intergenic | 25.0% |
| ! | ATTAAAGATACGTCAAATAC+TGG | - | chr8_3:53731375-53731394 | None:intergenic | 25.0% |
| ! | TACAGTGTAAGGAAATTAAA+GGG | - | chr8_3:53731540-53731559 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGGTACAGTGTA+AGG | - | chr8_3:53731551-53731570 | None:intergenic | 25.0% |
| ! | TTCATTCATTCATCAACAAA+TGG | + | chr8_3:53729744-53729763 | Msa1295580:exon | 25.0% |
| ! | ATATATTATACCTTAGGAGT+TGG | - | chr8_3:53729974-53729993 | None:intergenic | 25.0% |
| ! | CAGTACATATATTATACCTT+AGG | - | chr8_3:53729980-53729999 | None:intergenic | 25.0% |
| ! | TGATTATTCTGCACAATTTA+GGG | - | chr8_3:53730379-53730398 | None:intergenic | 25.0% |
| ! | TTGATTATTCTGCACAATTT+AGG | - | chr8_3:53730380-53730399 | None:intergenic | 25.0% |
| ! | ATATCATTTCTCTTATGAGA+TGG | - | chr8_3:53730420-53730439 | None:intergenic | 25.0% |
| !!! | TGTTTTTACTTTCTCTCTAT+TGG | + | chr8_3:53730498-53730517 | Msa1295580:intron | 25.0% |
| ! | CAAAAAATTGTCTCAACAAA+GGG | + | chr8_3:53730570-53730589 | Msa1295580:intron | 25.0% |
| ! | AATTCTTATCCCATTCAATA+TGG | - | chr8_3:53730709-53730728 | None:intergenic | 25.0% |
| ! | TATTGAATGGGATAAGAATT+TGG | + | chr8_3:53730709-53730728 | Msa1295580:intron | 25.0% |
| ! | ATTGAATGGGATAAGAATTT+GGG | + | chr8_3:53730710-53730729 | Msa1295580:intron | 25.0% |
| ! | GTTTATTCAATGGACAATAT+AGG | - | chr8_3:53730942-53730961 | None:intergenic | 25.0% |
| ! | ATTAAAGATACGTCAAATAC+TGG | - | chr8_3:53731375-53731394 | None:intergenic | 25.0% |
| ! | TACAGTGTAAGGAAATTAAA+GGG | - | chr8_3:53731540-53731559 | None:intergenic | 25.0% |
| !!! | TTTATTTTTGGTACAGTGTA+AGG | - | chr8_3:53731551-53731570 | None:intergenic | 25.0% |
| GTCAGAAAAAAGAATAAGGT+TGG | - | chr8_3:53729713-53729732 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTAACGAGGAAAA+GGG | - | chr8_3:53729948-53729967 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTAACGAGGAAA+AGG | - | chr8_3:53729949-53729968 | None:intergenic | 30.0% |
| ATTTAGAAACTAAACCCACT+TGG | + | chr8_3:53730167-53730186 | Msa1295580:intron | 30.0% | |
| TCTCTAGTACCAATTTAAGT+AGG | + | chr8_3:53730255-53730274 | Msa1295580:intron | 30.0% | |
| !!! | CCTTTGTTGAGACAATTTTT+TGG | - | chr8_3:53730572-53730591 | None:intergenic | 30.0% |
| CCAAAAAATTGTCTCAACAA+AGG | + | chr8_3:53730569-53730588 | Msa1295580:intron | 30.0% | |
| ATTCCTCTCTCATAATATTG+AGG | + | chr8_3:53730606-53730625 | Msa1295580:intron | 30.0% | |
| AAACCTCAATATTATGAGAG+AGG | - | chr8_3:53730612-53730631 | None:intergenic | 30.0% | |
| !! | AATAACTGTCGCACTTTTTA+GGG | - | chr8_3:53730749-53730768 | None:intergenic | 30.0% |
| !! | TAATAACTGTCGCACTTTTT+AGG | - | chr8_3:53730750-53730769 | None:intergenic | 30.0% |
| TTGAAGTTTGAATTCCAAAG+AGG | + | chr8_3:53731012-53731031 | Msa1295580:intron | 30.0% | |
| !!! | GATTCACTTTTTTTCCTCTT+TGG | - | chr8_3:53731029-53731048 | None:intergenic | 30.0% |
| TTCGGTATAAAATTGATGGA+AGG | - | chr8_3:53731158-53731177 | None:intergenic | 30.0% | |
| CAAGCTTAATTATTGTGTTC+TGG | - | chr8_3:53731343-53731362 | None:intergenic | 30.0% | |
| AATGCATACTAGTGTATCTT+TGG | + | chr8_3:53731402-53731421 | Msa1295580:three_prime_UTR | 30.0% | |
| GTACAGTGTAAGGAAATTAA+AGG | - | chr8_3:53731541-53731560 | None:intergenic | 30.0% | |
| GTCAGAAAAAAGAATAAGGT+TGG | - | chr8_3:53729713-53729732 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTAACGAGGAAAA+GGG | - | chr8_3:53729948-53729967 | None:intergenic | 30.0% |
| !!! | TTAGTTTTGTAACGAGGAAA+AGG | - | chr8_3:53729949-53729968 | None:intergenic | 30.0% |
| ATTTAGAAACTAAACCCACT+TGG | + | chr8_3:53730167-53730186 | Msa1295580:intron | 30.0% | |
| TCTCTAGTACCAATTTAAGT+AGG | + | chr8_3:53730255-53730274 | Msa1295580:intron | 30.0% | |
| !!! | CCTTTGTTGAGACAATTTTT+TGG | - | chr8_3:53730572-53730591 | None:intergenic | 30.0% |
| CCAAAAAATTGTCTCAACAA+AGG | + | chr8_3:53730569-53730588 | Msa1295580:intron | 30.0% | |
| ATTCCTCTCTCATAATATTG+AGG | + | chr8_3:53730606-53730625 | Msa1295580:intron | 30.0% | |
| AAACCTCAATATTATGAGAG+AGG | - | chr8_3:53730612-53730631 | None:intergenic | 30.0% | |
| !! | AATAACTGTCGCACTTTTTA+GGG | - | chr8_3:53730749-53730768 | None:intergenic | 30.0% |
| !! | TAATAACTGTCGCACTTTTT+AGG | - | chr8_3:53730750-53730769 | None:intergenic | 30.0% |
| TTGAAGTTTGAATTCCAAAG+AGG | + | chr8_3:53731012-53731031 | Msa1295580:intron | 30.0% | |
| !!! | GATTCACTTTTTTTCCTCTT+TGG | - | chr8_3:53731029-53731048 | None:intergenic | 30.0% |
| TTCGGTATAAAATTGATGGA+AGG | - | chr8_3:53731158-53731177 | None:intergenic | 30.0% | |
| CAAGCTTAATTATTGTGTTC+TGG | - | chr8_3:53731343-53731362 | None:intergenic | 30.0% | |
| AATGCATACTAGTGTATCTT+TGG | + | chr8_3:53731402-53731421 | Msa1295580:three_prime_UTR | 30.0% | |
| GTACAGTGTAAGGAAATTAA+AGG | - | chr8_3:53731541-53731560 | None:intergenic | 30.0% | |
| CAAACTGTTTGAACAAGCAT+TGG | + | chr8_3:53729792-53729811 | Msa1295580:CDS | 35.0% | |
| ATAGAGAAACTCCTGAAAGA+TGG | + | chr8_3:53729824-53729843 | Msa1295580:CDS | 35.0% | |
| !! | AACTGATTTTCCAACCACTT+TGG | - | chr8_3:53729860-53729879 | None:intergenic | 35.0% |
| TACGTTGAACATCTTCTTTG+AGG | - | chr8_3:53729909-53729928 | None:intergenic | 35.0% | |
| !!! | TTGGTGTTAGTTTTGTAACG+AGG | - | chr8_3:53729955-53729974 | None:intergenic | 35.0% |
| AAAACTAACACCAACTCCTA+AGG | + | chr8_3:53729961-53729980 | Msa1295580:CDS | 35.0% | |
| !! | TTTTGAGGGAAGTCTAAAAG+AGG | + | chr8_3:53730046-53730065 | Msa1295580:intron | 35.0% |
| CTAAAAGAGGCTATACTCTT+TGG | + | chr8_3:53730059-53730078 | Msa1295580:intron | 35.0% | |
| TCCTAAAAGTCAATACCACT+AGG | - | chr8_3:53730198-53730217 | None:intergenic | 35.0% | |
| GCACAAGTACTTTAAGTACA+CGG | - | chr8_3:53730676-53730695 | None:intergenic | 35.0% | |
| ! | CTTAAAGTACTTGTGCTATG+CGG | + | chr8_3:53730680-53730699 | Msa1295580:intron | 35.0% |
| ! | TTAAAGTACTTGTGCTATGC+GGG | + | chr8_3:53730681-53730700 | Msa1295580:intron | 35.0% |
| TAAGTCGTTGTTTAAGTGCA+TGG | - | chr8_3:53730868-53730887 | None:intergenic | 35.0% | |
| ! | AACAACGACTTATGACTTGT+CGG | + | chr8_3:53730876-53730895 | Msa1295580:intron | 35.0% |
| !!! | GTTGTTTTTGAAGAGGAGAA+AGG | - | chr8_3:53731128-53731147 | None:intergenic | 35.0% |
| AAGATACGTCAAATACTGGT+TGG | - | chr8_3:53731371-53731390 | None:intergenic | 35.0% | |
| CAAACTGTTTGAACAAGCAT+TGG | + | chr8_3:53729792-53729811 | Msa1295580:CDS | 35.0% | |
| ATAGAGAAACTCCTGAAAGA+TGG | + | chr8_3:53729824-53729843 | Msa1295580:CDS | 35.0% | |
| !! | AACTGATTTTCCAACCACTT+TGG | - | chr8_3:53729860-53729879 | None:intergenic | 35.0% |
| TACGTTGAACATCTTCTTTG+AGG | - | chr8_3:53729909-53729928 | None:intergenic | 35.0% | |
| !!! | TTGGTGTTAGTTTTGTAACG+AGG | - | chr8_3:53729955-53729974 | None:intergenic | 35.0% |
| AAAACTAACACCAACTCCTA+AGG | + | chr8_3:53729961-53729980 | Msa1295580:CDS | 35.0% | |
| !! | TTTTGAGGGAAGTCTAAAAG+AGG | + | chr8_3:53730046-53730065 | Msa1295580:intron | 35.0% |
| CTAAAAGAGGCTATACTCTT+TGG | + | chr8_3:53730059-53730078 | Msa1295580:intron | 35.0% | |
| TCCTAAAAGTCAATACCACT+AGG | - | chr8_3:53730198-53730217 | None:intergenic | 35.0% | |
| GCACAAGTACTTTAAGTACA+CGG | - | chr8_3:53730676-53730695 | None:intergenic | 35.0% | |
| ! | CTTAAAGTACTTGTGCTATG+CGG | + | chr8_3:53730680-53730699 | Msa1295580:intron | 35.0% |
| ! | TTAAAGTACTTGTGCTATGC+GGG | + | chr8_3:53730681-53730700 | Msa1295580:intron | 35.0% |
| TAAGTCGTTGTTTAAGTGCA+TGG | - | chr8_3:53730868-53730887 | None:intergenic | 35.0% | |
| ! | AACAACGACTTATGACTTGT+CGG | + | chr8_3:53730876-53730895 | Msa1295580:intron | 35.0% |
| !!! | GTTGTTTTTGAAGAGGAGAA+AGG | - | chr8_3:53731128-53731147 | None:intergenic | 35.0% |
| AAGATACGTCAAATACTGGT+TGG | - | chr8_3:53731371-53731390 | None:intergenic | 35.0% | |
| ATCAACAAATGGCAACCTCT+TGG | + | chr8_3:53729755-53729774 | Msa1295580:exon | 40.0% | |
| TGTAACGAGGAAAAGGGATA+TGG | - | chr8_3:53729942-53729961 | None:intergenic | 40.0% | |
| GAAACTAAACCCACTTGGAT+TGG | + | chr8_3:53730172-53730191 | Msa1295580:intron | 40.0% | |
| !!! | GCCTAGTGGTATTGACTTTT+AGG | + | chr8_3:53730194-53730213 | Msa1295580:intron | 40.0% |
| GAATTGAACCTGAGATCTCA+AGG | - | chr8_3:53730232-53730251 | None:intergenic | 40.0% | |
| ! | TAAAGTACTTGTGCTATGCG+GGG | + | chr8_3:53730682-53730701 | Msa1295580:intron | 40.0% |
| GTGCATGGACATATTGTAGT+TGG | - | chr8_3:53730853-53730872 | None:intergenic | 40.0% | |
| TTTGTTTGAACCTGCAAGCT+CGG | - | chr8_3:53730983-53731002 | None:intergenic | 40.0% | |
| ! | TCTTTTCCGATATACTTCGC+AGG | + | chr8_3:53731302-53731321 | Msa1295580:intron | 40.0% |
| CAAGAACCTGCGAAGTATAT+CGG | - | chr8_3:53731311-53731330 | None:intergenic | 40.0% | |
| TGTAAGGAAATTAAAGGGCG+AGG | - | chr8_3:53731535-53731554 | None:intergenic | 40.0% | |
| ATCAACAAATGGCAACCTCT+TGG | + | chr8_3:53729755-53729774 | Msa1295580:exon | 40.0% | |
| TGTAACGAGGAAAAGGGATA+TGG | - | chr8_3:53729942-53729961 | None:intergenic | 40.0% | |
| GAAACTAAACCCACTTGGAT+TGG | + | chr8_3:53730172-53730191 | Msa1295580:intron | 40.0% | |
| !!! | GCCTAGTGGTATTGACTTTT+AGG | + | chr8_3:53730194-53730213 | Msa1295580:intron | 40.0% |
| GAATTGAACCTGAGATCTCA+AGG | - | chr8_3:53730232-53730251 | None:intergenic | 40.0% | |
| ! | TAAAGTACTTGTGCTATGCG+GGG | + | chr8_3:53730682-53730701 | Msa1295580:intron | 40.0% |
| GTGCATGGACATATTGTAGT+TGG | - | chr8_3:53730853-53730872 | None:intergenic | 40.0% | |
| TTTGTTTGAACCTGCAAGCT+CGG | - | chr8_3:53730983-53731002 | None:intergenic | 40.0% | |
| ! | TCTTTTCCGATATACTTCGC+AGG | + | chr8_3:53731302-53731321 | Msa1295580:intron | 40.0% |
| CAAGAACCTGCGAAGTATAT+CGG | - | chr8_3:53731311-53731330 | None:intergenic | 40.0% | |
| TGTAAGGAAATTAAAGGGCG+AGG | - | chr8_3:53731535-53731554 | None:intergenic | 40.0% | |
| GCAACATTGTGCCATCTTTC+AGG | - | chr8_3:53729838-53729857 | None:intergenic | 45.0% | |
| ATGGCACAATGTTGCCAAAG+TGG | + | chr8_3:53729843-53729862 | Msa1295580:CDS | 45.0% | |
| CACAATGTTGCCAAAGTGGT+TGG | + | chr8_3:53729847-53729866 | Msa1295580:CDS | 45.0% | |
| GATGTTCAACGTATTGAGCG+TGG | + | chr8_3:53729916-53729935 | Msa1295580:CDS | 45.0% | |
| GAGATCTCAAGGAAACTCTC+AGG | - | chr8_3:53730221-53730240 | None:intergenic | 45.0% | |
| GAGAGTTTCCTTGAGATCTC+AGG | + | chr8_3:53730221-53730240 | Msa1295580:intron | 45.0% | |
| TATGCGGGGTCCATATTGAA+TGG | + | chr8_3:53730696-53730715 | Msa1295580:intron | 45.0% | |
| ATGCGGGGTCCATATTGAAT+GGG | + | chr8_3:53730697-53730716 | Msa1295580:intron | 45.0% | |
| TTGTTTGAACCTGCAAGCTC+GGG | - | chr8_3:53730982-53731001 | None:intergenic | 45.0% | |
| !! | AGAAGAGTGCCACATTCACT+TGG | - | chr8_3:53731460-53731479 | None:intergenic | 45.0% |
| GCAACATTGTGCCATCTTTC+AGG | - | chr8_3:53729838-53729857 | None:intergenic | 45.0% | |
| ATGGCACAATGTTGCCAAAG+TGG | + | chr8_3:53729843-53729862 | Msa1295580:CDS | 45.0% | |
| CACAATGTTGCCAAAGTGGT+TGG | + | chr8_3:53729847-53729866 | Msa1295580:CDS | 45.0% | |
| GATGTTCAACGTATTGAGCG+TGG | + | chr8_3:53729916-53729935 | Msa1295580:CDS | 45.0% | |
| GAGATCTCAAGGAAACTCTC+AGG | - | chr8_3:53730221-53730240 | None:intergenic | 45.0% | |
| GAGAGTTTCCTTGAGATCTC+AGG | + | chr8_3:53730221-53730240 | Msa1295580:intron | 45.0% | |
| TATGCGGGGTCCATATTGAA+TGG | + | chr8_3:53730696-53730715 | Msa1295580:intron | 45.0% | |
| ATGCGGGGTCCATATTGAAT+GGG | + | chr8_3:53730697-53730716 | Msa1295580:intron | 45.0% | |
| TTGTTTGAACCTGCAAGCTC+GGG | - | chr8_3:53730982-53731001 | None:intergenic | 45.0% | |
| !! | AGAAGAGTGCCACATTCACT+TGG | - | chr8_3:53731460-53731479 | None:intergenic | 45.0% |
| ACCACTAGGCCAATCCAAGT+GGG | - | chr8_3:53730184-53730203 | None:intergenic | 50.0% | |
| TACCACTAGGCCAATCCAAG+TGG | - | chr8_3:53730185-53730204 | None:intergenic | 50.0% | |
| TGTTTGAACCTGCAAGCTCG+GGG | - | chr8_3:53730981-53731000 | None:intergenic | 50.0% | |
| TGCACCTTGCCAAGTGAATG+TGG | + | chr8_3:53731448-53731467 | Msa1295580:three_prime_UTR | 50.0% | |
| AGTGCCACATTCACTTGGCA+AGG | - | chr8_3:53731455-53731474 | None:intergenic | 50.0% | |
| ACCACTAGGCCAATCCAAGT+GGG | - | chr8_3:53730184-53730203 | None:intergenic | 50.0% | |
| TACCACTAGGCCAATCCAAG+TGG | - | chr8_3:53730185-53730204 | None:intergenic | 50.0% | |
| TGTTTGAACCTGCAAGCTCG+GGG | - | chr8_3:53730981-53731000 | None:intergenic | 50.0% | |
| TGCACCTTGCCAAGTGAATG+TGG | + | chr8_3:53731448-53731467 | Msa1295580:three_prime_UTR | 50.0% | |
| AGTGCCACATTCACTTGGCA+AGG | - | chr8_3:53731455-53731474 | None:intergenic | 50.0% | |
| TGGCAACCTCTTGGACTGCA+AGG | + | chr8_3:53729764-53729783 | Msa1295580:CDS | 55.0% | |
| GTTCTGCCTTGCAGTCCAAG+AGG | - | chr8_3:53729773-53729792 | None:intergenic | 55.0% | |
| !! | ACCCACTTGGATTGGCCTAG+TGG | + | chr8_3:53730180-53730199 | Msa1295580:intron | 55.0% |
| TGGCAACCTCTTGGACTGCA+AGG | + | chr8_3:53729764-53729783 | Msa1295580:CDS | 55.0% | |
| GTTCTGCCTTGCAGTCCAAG+AGG | - | chr8_3:53729773-53729792 | None:intergenic | 55.0% | |
| !! | ACCCACTTGGATTGGCCTAG+TGG | + | chr8_3:53730180-53730199 | Msa1295580:intron | 55.0% |
| ATCAATGGCCCCGAGCTTGC+AGG | + | chr8_3:53730970-53730989 | Msa1295580:intron | 60.0% | |
| ATCAATGGCCCCGAGCTTGC+AGG | + | chr8_3:53730970-53730989 | Msa1295580:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53729696 | 53731666 | 53729696 | ID=Msa1295580;Name=Msa1295580 |
| chr8_3 | mRNA | 53729696 | 53731666 | 53729696 | ID=Msa1295580-mRNA-1;Parent=Msa1295580;Name=Msa1295580-mRNA-1;_AED=0.29;_eAED=0.29;_QI=67|0|0.5|1|0|0.5|2|343|72 |
| chr8_3 | exon | 53729696 | 53729981 | 53729696 | ID=Msa1295580-mRNA-1:exon:15449;Parent=Msa1295580-mRNA-1 |
| chr8_3 | exon | 53731324 | 53731666 | 53731324 | ID=Msa1295580-mRNA-1:exon:15450;Parent=Msa1295580-mRNA-1 |
| chr8_3 | five_prime_UTR | 53729696 | 53729762 | 53729696 | ID=Msa1295580-mRNA-1:five_prime_utr;Parent=Msa1295580-mRNA-1 |
| chr8_3 | CDS | 53729763 | 53729981 | 53729763 | ID=Msa1295580-mRNA-1:cds;Parent=Msa1295580-mRNA-1 |
| chr8_3 | three_prime_UTR | 53731324 | 53731666 | 53731324 | ID=Msa1295580-mRNA-1:three_prime_utr;Parent=Msa1295580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
