AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0621380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621380 MtrunA17_Chr8g0373111 98.611 72 1 0 1 72 1 72 1.06e-49 150
Msa0621380 MtrunA17_Chr8g0373121 98.611 72 1 0 1 72 1 72 1.06e-49 150
Msa0621380 MtrunA17_Chr8g0373131 97.222 72 2 0 1 72 1 72 3.36e-49 149
Msa0621380 MtrunA17_Chr5g0404301 82.258 62 11 0 3 64 2 63 1.06e-35 114
Msa0621380 MtrunA17_Chr8g0373101 68.571 70 21 1 1 70 1 69 3.10e-32 106
Msa0621380 MtrunA17_Chr3g0144631 64.615 65 22 1 5 68 16 80 1.12e-27 95.1
Msa0621380 MtrunA17_Chr1g0155181 55.224 67 29 1 2 67 4 70 6.04e-26 90.9
Msa0621380 MtrunA17_Chr6g0449111 57.576 66 27 1 2 66 7 72 2.73e-25 89.0
Msa0621380 MtrunA17_Chr5g0404101 54.688 64 28 1 5 67 19 82 1.38e-24 87.8
Msa0621380 MtrunA17_Chr3g0141601 55.072 69 30 1 2 69 4 72 6.39e-24 85.9
Msa0621380 MtrunA17_Chr3g0081631 55.072 69 29 1 2 68 7 75 8.47e-23 83.2
Msa0621380 MtrunA17_Chr7g0255841 59.016 61 24 1 8 67 15 75 3.53e-22 81.6
Msa0621380 MtrunA17_Chr5g0429521 54.930 71 31 1 1 70 25 95 7.70e-21 82.8
Msa0621380 MtrunA17_Chr3g0141641 55.385 65 28 1 4 67 2 66 6.53e-20 75.9
Msa0621380 MtrunA17_Chr3g0104071 54.412 68 30 1 2 68 40 107 8.68e-20 80.1
Msa0621380 MtrunA17_Chr7g0241761 51.429 70 33 1 2 70 32 101 7.15e-18 75.1
Msa0621380 MtrunA17_Chr8g0365011 43.836 73 40 1 1 72 4 76 5.99e-17 72.4
Msa0621380 MtrunA17_Chr5g0436501 50.769 65 31 1 3 66 25 89 5.16e-16 69.7
Msa0621380 MtrunA17_Chr1g0194071 47.143 70 35 1 3 70 9 78 3.30e-15 63.9
Msa0621380 MtrunA17_Chr7g0270711 50.820 61 28 1 3 61 9 69 1.29e-14 62.4
Msa0621380 MtrunA17_Chr1g0162081 38.571 70 42 1 2 70 9 78 2.60e-14 65.1
Msa0621380 MtrunA17_Chr8g0364741 37.500 72 44 1 2 72 7 78 1.87e-13 60.5
Msa0621380 MtrunA17_Chr1g0210471 40.000 65 38 1 3 66 22 86 1.32e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621380 AT4G39250.1 66.154 65 21 1 5 68 14 78 1.41e-28 98.2
Msa0621380 AT1G75250.2 62.687 67 24 1 3 68 10 76 4.76e-27 94.4
Msa0621380 AT1G75250.1 64.615 65 22 1 5 68 12 76 6.58e-27 94.7
Msa0621380 AT2G21650.1 56.522 69 29 1 5 72 14 82 8.41e-26 91.3
Msa0621380 AT1G19510.1 61.290 62 23 1 8 68 15 76 7.36e-24 86.3
Msa0621380 AT2G18328.1 55.385 65 27 2 8 71 14 77 1.04e-18 72.8
Msa0621380 AT2G38090.1 51.429 70 33 1 2 70 26 95 3.22e-18 76.3
Msa0621380 AT5G58900.1 52.174 69 32 1 2 69 31 99 1.33e-17 74.3
Msa0621380 AT4G36570.1 65.909 44 14 1 5 47 12 55 6.84e-16 65.1
Msa0621380 AT5G05790.2 45.714 70 37 1 2 70 28 97 9.27e-16 69.3
Msa0621380 AT5G05790.1 45.714 70 37 1 2 70 28 97 9.27e-16 69.3
Msa0621380 AT3G11280.2 49.206 63 31 1 5 66 33 95 2.42e-15 68.2
Msa0621380 AT3G11280.1 49.206 63 31 1 5 66 33 95 2.42e-15 68.2
Msa0621380 AT5G08520.1 47.826 69 35 1 5 72 12 80 3.62e-14 65.1
Msa0621380 AT5G04760.1 43.284 67 37 1 1 66 1 67 3.29e-13 61.6
Msa0621380 AT5G01200.1 45.070 71 37 2 4 72 29 99 1.61e-12 60.5
Msa0621380 AT1G49010.1 41.429 70 37 2 1 66 4 73 5.46e-12 59.3

Find 26 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACATTGTGCCATCTTTC+TGG 0.106622 4_2:-73468853 None:intergenic
GTACAATGTAAGGAAATTAA+AGG 0.280704 4_2:-73470588 None:intergenic
CAAGCTTAATTATTGTGTTC+TGG 0.297492 4_2:-73470390 None:intergenic
AATGCATACTAGTGTATCTT+TGG 0.359894 4_2:+73470452 Msa0621380:three_prime_UTR
ATTAAAGATACGTCAAATAC+TGG 0.365763 4_2:-73470422 None:intergenic
ATAGAAAGAAATTAATATAT+AGG 0.371156 4_2:-73470532 None:intergenic
TTCATTCATTCATCAACAAA+TGG 0.409031 4_2:+73468762 Msa0621380:exon
TGTAACGAGGAAAAGGGATA+TGG 0.417505 4_2:-73468957 None:intergenic
TACGTTGAACATCTTCTTTG+AGG 0.435409 4_2:-73468924 None:intergenic
CAAACTGTTTGAACAAGCAT+TGG 0.467435 4_2:+73468810 Msa0621380:CDS
TCATTATTGTAAGTTTATGA+AGG 0.467482 4_2:+73470645 Msa0621380:three_prime_UTR
TACAATGTAAGGAAATTAAA+GGG 0.482580 4_2:-73470587 None:intergenic
CACAATGTTGCCAAAGTGGT+TGG 0.534351 4_2:+73468865 Msa0621380:CDS
ATCAACAAATGGCAACCTCA+TGG 0.544947 4_2:+73468773 Msa0621380:exon
AAAACTAACACCAACTCCTA+AGG 0.547909 4_2:+73468979 Msa0621380:CDS
AAGATACGTCAAATACTGGT+TGG 0.552145 4_2:-73470418 None:intergenic
ATAGAGAAACTCCAGAAAGA+TGG 0.558722 4_2:+73468842 Msa0621380:CDS
AGAAGAGTGCCACATTCACT+TGG 0.560492 4_2:-73470507 None:intergenic
ATATATTATACCTTAGGAGT+TGG 0.560505 4_2:-73468989 None:intergenic
TGTAAGGAAATTAAAGGGCG+AGG 0.564312 4_2:-73470582 None:intergenic
AGTGCCACATTCACTTGGCA+AGG 0.606187 4_2:-73470502 None:intergenic
ATGGCACAATGTTGCCAAAG+TGG 0.642850 4_2:+73468861 Msa0621380:CDS
TGGCAACCTCATGGACTGCG+AGG 0.652849 4_2:+73468782 Msa0621380:CDS
TGCACCTTGCCAAGTGAATG+TGG 0.653689 4_2:+73470498 Msa0621380:three_prime_UTR
GTTCTGCCTCGCAGTCCATG+AGG 0.665063 4_2:-73468788 None:intergenic
GATGTTCAACGTATTGAGCG+TGG 0.669371 4_2:+73468934 Msa0621380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTGTTAAAAAAAGAATA+TGG - chr4_2:73468735-73468754 None:intergenic 10.0%
!!! TTAAATTATTATGTTTTTGA+GGG + chr4_2:73469049-73469068 Msa0621380:intron 10.0%
!! TAATATCTAATTAAATTTAG+GGG - chr4_2:73469110-73469129 None:intergenic 10.0%
!!! TATTATTTTTACAAACATAT+AGG + chr4_2:73469368-73469387 Msa0621380:intron 10.0%
!!! TTAATTGAGATTTTATATTA+TGG - chr4_2:73469651-73469670 None:intergenic 10.0%
!!! ATATGTTTAATTTTTTTCTT+AGG + chr4_2:73469832-73469851 Msa0621380:intron 10.0%
!! ATATTATATAGTTTATTCAA+TGG - chr4_2:73470005-73470024 None:intergenic 10.0%
!! AATAAACTATATAATATCAA+TGG + chr4_2:73470008-73470027 Msa0621380:intron 10.0%
!!! ATAATAAGTATTTGAAATTT+TGG + chr4_2:73470269-73470288 Msa0621380:intron 10.0%
!!! TAATAAGTATTTGAAATTTT+GGG + chr4_2:73470270-73470289 Msa0621380:intron 10.0%
!! ATAGAAAGAAATTAATATAT+AGG - chr4_2:73470535-73470554 None:intergenic 10.0%
!! ATATTGTTAAAAAAAGAATA+TGG - chr4_2:73468735-73468754 None:intergenic 10.0%
!!! TTAAATTATTATGTTTTTGA+GGG + chr4_2:73469049-73469068 Msa0621380:intron 10.0%
!! TAATATCTAATTAAATTTAG+GGG - chr4_2:73469110-73469129 None:intergenic 10.0%
!!! TATTATTTTTACAAACATAT+AGG + chr4_2:73469368-73469387 Msa0621380:intron 10.0%
!!! TTAATTGAGATTTTATATTA+TGG - chr4_2:73469651-73469670 None:intergenic 10.0%
!!! ATATGTTTAATTTTTTTCTT+AGG + chr4_2:73469832-73469851 Msa0621380:intron 10.0%
!! ATATTATATAGTTTATTCAA+TGG - chr4_2:73470005-73470024 None:intergenic 10.0%
!! AATAAACTATATAATATCAA+TGG + chr4_2:73470008-73470027 Msa0621380:intron 10.0%
!!! ATAATAAGTATTTGAAATTT+TGG + chr4_2:73470269-73470288 Msa0621380:intron 10.0%
!!! TAATAAGTATTTGAAATTTT+GGG + chr4_2:73470270-73470289 Msa0621380:intron 10.0%
!! ATAGAAAGAAATTAATATAT+AGG - chr4_2:73470535-73470554 None:intergenic 10.0%
!! AACATAATAATTTAAGAACA+TGG - chr4_2:73469044-73469063 None:intergenic 15.0%
!!! CTTAAATTATTATGTTTTTG+AGG + chr4_2:73469048-73469067 Msa0621380:intron 15.0%
!!! TTTTAGTTAAACATAGTTTA+GGG - chr4_2:73469165-73469184 None:intergenic 15.0%
!!! ATTTTAGTTAAACATAGTTT+AGG - chr4_2:73469166-73469185 None:intergenic 15.0%
!!! ATGTTCAAAAATTATTGATT+TGG + chr4_2:73469941-73469960 Msa0621380:intron 15.0%
!!! TTATAAAGTTTTTTTTGAAG+AGG - chr4_2:73470188-73470207 None:intergenic 15.0%
!! AACATAATAATTTAAGAACA+TGG - chr4_2:73469044-73469063 None:intergenic 15.0%
!!! CTTAAATTATTATGTTTTTG+AGG + chr4_2:73469048-73469067 Msa0621380:intron 15.0%
!!! TTTTAGTTAAACATAGTTTA+GGG - chr4_2:73469165-73469184 None:intergenic 15.0%
!!! ATTTTAGTTAAACATAGTTT+AGG - chr4_2:73469166-73469185 None:intergenic 15.0%
!!! ATGTTCAAAAATTATTGATT+TGG + chr4_2:73469941-73469960 Msa0621380:intron 15.0%
!!! TTATAAAGTTTTTTTTGAAG+AGG - chr4_2:73470188-73470207 None:intergenic 15.0%
!! TGTTAAAAAAAGAATATGGT+TGG - chr4_2:73468731-73468750 None:intergenic 20.0%
!! TTTAGTTAAACATAGTTTAG+GGG - chr4_2:73469164-73469183 None:intergenic 20.0%
!!! TTAAATTAGCCTACTTAAAT+TGG - chr4_2:73469284-73469303 None:intergenic 20.0%
!! TTAAATTTCGTTGTATATGT+TGG + chr4_2:73469557-73469576 Msa0621380:intron 20.0%
!! TTTCGTATAAAATTGATGAA+AGG - chr4_2:73470211-73470230 None:intergenic 20.0%
!! TACAATGTAAGGAAATTAAA+GGG - chr4_2:73470590-73470609 None:intergenic 20.0%
!!! TTTATTTTTGGTACAATGTA+AGG - chr4_2:73470601-73470620 None:intergenic 20.0%
!! TCATTATTGTAAGTTTATGA+AGG + chr4_2:73470645-73470664 Msa0621380:three_prime_UTR 20.0%
!! TGTTAAAAAAAGAATATGGT+TGG - chr4_2:73468731-73468750 None:intergenic 20.0%
!! TTTAGTTAAACATAGTTTAG+GGG - chr4_2:73469164-73469183 None:intergenic 20.0%
!!! TTAAATTAGCCTACTTAAAT+TGG - chr4_2:73469284-73469303 None:intergenic 20.0%
!! TTAAATTTCGTTGTATATGT+TGG + chr4_2:73469557-73469576 Msa0621380:intron 20.0%
!! TTTCGTATAAAATTGATGAA+AGG - chr4_2:73470211-73470230 None:intergenic 20.0%
!! TACAATGTAAGGAAATTAAA+GGG - chr4_2:73470590-73470609 None:intergenic 20.0%
!!! TTTATTTTTGGTACAATGTA+AGG - chr4_2:73470601-73470620 None:intergenic 20.0%
!! TCATTATTGTAAGTTTATGA+AGG + chr4_2:73470645-73470664 Msa0621380:three_prime_UTR 20.0%
! TTCATTCATTCATCAACAAA+TGG + chr4_2:73468762-73468781 Msa0621380:exon 25.0%
! ATATATTATACCTTAGGAGT+TGG - chr4_2:73468992-73469011 None:intergenic 25.0%
! CAGTACATATATTATACCTT+AGG - chr4_2:73468998-73469017 None:intergenic 25.0%
! TGGTAAGTGTGTAATATATT+AGG - chr4_2:73469136-73469155 None:intergenic 25.0%
! ATACAACGAAATTTAAGTAG+TGG - chr4_2:73469553-73469572 None:intergenic 25.0%
! ATTCCTCTCTCATAATATTA+AGG + chr4_2:73469621-73469640 Msa0621380:intron 25.0%
! AAACCTTAATATTATGAGAG+AGG - chr4_2:73469627-73469646 None:intergenic 25.0%
! AATTCTTATCCCATTCAATA+TGG - chr4_2:73469724-73469743 None:intergenic 25.0%
! TATTGAATGGGATAAGAATT+TGG + chr4_2:73469724-73469743 Msa0621380:intron 25.0%
! ATTGAATGGGATAAGAATTT+GGG + chr4_2:73469725-73469744 Msa0621380:intron 25.0%
!!! CAGTTATTAGTTTTTATACG+TGG + chr4_2:73469776-73469795 Msa0621380:intron 25.0%
! ATTAAAGATACGTCAAATAC+TGG - chr4_2:73470425-73470444 None:intergenic 25.0%
! GTACAATGTAAGGAAATTAA+AGG - chr4_2:73470591-73470610 None:intergenic 25.0%
! TTCATTCATTCATCAACAAA+TGG + chr4_2:73468762-73468781 Msa0621380:exon 25.0%
! ATATATTATACCTTAGGAGT+TGG - chr4_2:73468992-73469011 None:intergenic 25.0%
! CAGTACATATATTATACCTT+AGG - chr4_2:73468998-73469017 None:intergenic 25.0%
! TGGTAAGTGTGTAATATATT+AGG - chr4_2:73469136-73469155 None:intergenic 25.0%
! ATACAACGAAATTTAAGTAG+TGG - chr4_2:73469553-73469572 None:intergenic 25.0%
! ATTCCTCTCTCATAATATTA+AGG + chr4_2:73469621-73469640 Msa0621380:intron 25.0%
! AAACCTTAATATTATGAGAG+AGG - chr4_2:73469627-73469646 None:intergenic 25.0%
! AATTCTTATCCCATTCAATA+TGG - chr4_2:73469724-73469743 None:intergenic 25.0%
! TATTGAATGGGATAAGAATT+TGG + chr4_2:73469724-73469743 Msa0621380:intron 25.0%
! ATTGAATGGGATAAGAATTT+GGG + chr4_2:73469725-73469744 Msa0621380:intron 25.0%
!!! CAGTTATTAGTTTTTATACG+TGG + chr4_2:73469776-73469795 Msa0621380:intron 25.0%
! ATTAAAGATACGTCAAATAC+TGG - chr4_2:73470425-73470444 None:intergenic 25.0%
! GTACAATGTAAGGAAATTAA+AGG - chr4_2:73470591-73470610 None:intergenic 25.0%
!!! TAGTTTTGTAACGAGGAAAA+GGG - chr4_2:73468966-73468985 None:intergenic 30.0%
!!! TTAGTTTTGTAACGAGGAAA+AGG - chr4_2:73468967-73468986 None:intergenic 30.0%
ATTTAGAAACTAAACCCACT+TGG + chr4_2:73469184-73469203 Msa0621380:intron 30.0%
TCTCTAGTACCAATTTAAGT+AGG + chr4_2:73469272-73469291 Msa0621380:intron 30.0%
TGCTTATTCTGCACAATTTA+GGG - chr4_2:73469396-73469415 None:intergenic 30.0%
TTGCTTATTCTGCACAATTT+AGG - chr4_2:73469397-73469416 None:intergenic 30.0%
AATTTCTCTCCCTATTACTT+TGG + chr4_2:73469519-73469538 Msa0621380:intron 30.0%
GCGTAAAAACCAAAGTAATA+GGG - chr4_2:73469531-73469550 None:intergenic 30.0%
TCAAGAAATTGTCTCAACAA+AGG + chr4_2:73469584-73469603 Msa0621380:intron 30.0%
CAAGAAATTGTCTCAACAAA+GGG + chr4_2:73469585-73469604 Msa0621380:intron 30.0%
!! AATAACTGTCGCACTTTTTA+GGG - chr4_2:73469764-73469783 None:intergenic 30.0%
!! TAATAACTGTCGCACTTTTT+AGG - chr4_2:73469765-73469784 None:intergenic 30.0%
TAAGTCATTGTTTAAGTGCA+TGG - chr4_2:73469888-73469907 None:intergenic 30.0%
! AACAATGACTTATGACTTGT+CGG + chr4_2:73469896-73469915 Msa0621380:intron 30.0%
!! ATAACAGAGGTATTCTTGTA+TGG - chr4_2:73469975-73469994 None:intergenic 30.0%
CAATGGACAATATATAACAG+AGG - chr4_2:73469988-73470007 None:intergenic 30.0%
TTGAAGTTTGAATTCCAAAG+AGG + chr4_2:73470065-73470084 Msa0621380:intron 30.0%
!!! GATTCACTTTTTTTCCTCTT+TGG - chr4_2:73470082-73470101 None:intergenic 30.0%
!!! GTTTTTTTTGAAGAGGAGAA+AGG - chr4_2:73470181-73470200 None:intergenic 30.0%
CAAGCTTAATTATTGTGTTC+TGG - chr4_2:73470393-73470412 None:intergenic 30.0%
AATGCATACTAGTGTATCTT+TGG + chr4_2:73470452-73470471 Msa0621380:three_prime_UTR 30.0%
!!! TAGTTTTGTAACGAGGAAAA+GGG - chr4_2:73468966-73468985 None:intergenic 30.0%
!!! TTAGTTTTGTAACGAGGAAA+AGG - chr4_2:73468967-73468986 None:intergenic 30.0%
ATTTAGAAACTAAACCCACT+TGG + chr4_2:73469184-73469203 Msa0621380:intron 30.0%
TCTCTAGTACCAATTTAAGT+AGG + chr4_2:73469272-73469291 Msa0621380:intron 30.0%
TGCTTATTCTGCACAATTTA+GGG - chr4_2:73469396-73469415 None:intergenic 30.0%
TTGCTTATTCTGCACAATTT+AGG - chr4_2:73469397-73469416 None:intergenic 30.0%
AATTTCTCTCCCTATTACTT+TGG + chr4_2:73469519-73469538 Msa0621380:intron 30.0%
GCGTAAAAACCAAAGTAATA+GGG - chr4_2:73469531-73469550 None:intergenic 30.0%
TCAAGAAATTGTCTCAACAA+AGG + chr4_2:73469584-73469603 Msa0621380:intron 30.0%
CAAGAAATTGTCTCAACAAA+GGG + chr4_2:73469585-73469604 Msa0621380:intron 30.0%
!! AATAACTGTCGCACTTTTTA+GGG - chr4_2:73469764-73469783 None:intergenic 30.0%
!! TAATAACTGTCGCACTTTTT+AGG - chr4_2:73469765-73469784 None:intergenic 30.0%
TAAGTCATTGTTTAAGTGCA+TGG - chr4_2:73469888-73469907 None:intergenic 30.0%
! AACAATGACTTATGACTTGT+CGG + chr4_2:73469896-73469915 Msa0621380:intron 30.0%
!! ATAACAGAGGTATTCTTGTA+TGG - chr4_2:73469975-73469994 None:intergenic 30.0%
CAATGGACAATATATAACAG+AGG - chr4_2:73469988-73470007 None:intergenic 30.0%
TTGAAGTTTGAATTCCAAAG+AGG + chr4_2:73470065-73470084 Msa0621380:intron 30.0%
!!! GATTCACTTTTTTTCCTCTT+TGG - chr4_2:73470082-73470101 None:intergenic 30.0%
!!! GTTTTTTTTGAAGAGGAGAA+AGG - chr4_2:73470181-73470200 None:intergenic 30.0%
CAAGCTTAATTATTGTGTTC+TGG - chr4_2:73470393-73470412 None:intergenic 30.0%
AATGCATACTAGTGTATCTT+TGG + chr4_2:73470452-73470471 Msa0621380:three_prime_UTR 30.0%
CAAACTGTTTGAACAAGCAT+TGG + chr4_2:73468810-73468829 Msa0621380:CDS 35.0%
ATAGAGAAACTCCAGAAAGA+TGG + chr4_2:73468842-73468861 Msa0621380:CDS 35.0%
!! AACTGATTTTCCAACCACTT+TGG - chr4_2:73468878-73468897 None:intergenic 35.0%
TACGTTGAACATCTTCTTTG+AGG - chr4_2:73468927-73468946 None:intergenic 35.0%
!!! TTGGTGTTAGTTTTGTAACG+AGG - chr4_2:73468973-73468992 None:intergenic 35.0%
AAAACTAACACCAACTCCTA+AGG + chr4_2:73468979-73468998 Msa0621380:CDS 35.0%
!! TTTTGAGGGAAGTCTAAAAG+AGG + chr4_2:73469063-73469082 Msa0621380:intron 35.0%
CTAAAAGAGGCTATACTCTT+TGG + chr4_2:73469076-73469095 Msa0621380:intron 35.0%
AACATAGTTTAGGGGCTTTA+TGG - chr4_2:73469156-73469175 None:intergenic 35.0%
TCCTAAAAGTCAATACCACT+AGG - chr4_2:73469215-73469234 None:intergenic 35.0%
GGCGTAAAAACCAAAGTAAT+AGG - chr4_2:73469532-73469551 None:intergenic 35.0%
GCACAAGTACTTTAAGTACA+CGG - chr4_2:73469691-73469710 None:intergenic 35.0%
! CTTAAAGTACTTGTGCTATG+CGG + chr4_2:73469695-73469714 Msa0621380:intron 35.0%
! TTAAAGTACTTGTGCTATGC+GGG + chr4_2:73469696-73469715 Msa0621380:intron 35.0%
AAGATACGTCAAATACTGGT+TGG - chr4_2:73470421-73470440 None:intergenic 35.0%
CAAACTGTTTGAACAAGCAT+TGG + chr4_2:73468810-73468829 Msa0621380:CDS 35.0%
ATAGAGAAACTCCAGAAAGA+TGG + chr4_2:73468842-73468861 Msa0621380:CDS 35.0%
!! AACTGATTTTCCAACCACTT+TGG - chr4_2:73468878-73468897 None:intergenic 35.0%
TACGTTGAACATCTTCTTTG+AGG - chr4_2:73468927-73468946 None:intergenic 35.0%
!!! TTGGTGTTAGTTTTGTAACG+AGG - chr4_2:73468973-73468992 None:intergenic 35.0%
AAAACTAACACCAACTCCTA+AGG + chr4_2:73468979-73468998 Msa0621380:CDS 35.0%
!! TTTTGAGGGAAGTCTAAAAG+AGG + chr4_2:73469063-73469082 Msa0621380:intron 35.0%
CTAAAAGAGGCTATACTCTT+TGG + chr4_2:73469076-73469095 Msa0621380:intron 35.0%
AACATAGTTTAGGGGCTTTA+TGG - chr4_2:73469156-73469175 None:intergenic 35.0%
TCCTAAAAGTCAATACCACT+AGG - chr4_2:73469215-73469234 None:intergenic 35.0%
GGCGTAAAAACCAAAGTAAT+AGG - chr4_2:73469532-73469551 None:intergenic 35.0%
GCACAAGTACTTTAAGTACA+CGG - chr4_2:73469691-73469710 None:intergenic 35.0%
! CTTAAAGTACTTGTGCTATG+CGG + chr4_2:73469695-73469714 Msa0621380:intron 35.0%
! TTAAAGTACTTGTGCTATGC+GGG + chr4_2:73469696-73469715 Msa0621380:intron 35.0%
AAGATACGTCAAATACTGGT+TGG - chr4_2:73470421-73470440 None:intergenic 35.0%
ATCAACAAATGGCAACCTCA+TGG + chr4_2:73468773-73468792 Msa0621380:exon 40.0%
TGTAACGAGGAAAAGGGATA+TGG - chr4_2:73468960-73468979 None:intergenic 40.0%
GAAACTAAACCCACTTGGAT+TGG + chr4_2:73469189-73469208 Msa0621380:intron 40.0%
!!! GCCTAGTGGTATTGACTTTT+AGG + chr4_2:73469211-73469230 Msa0621380:intron 40.0%
GAATTGAACCTGAGATCTCA+AGG - chr4_2:73469249-73469268 None:intergenic 40.0%
! TAAAGTACTTGTGCTATGCG+GGG + chr4_2:73469697-73469716 Msa0621380:intron 40.0%
GTGCATGGACATATTGTAGT+TGG - chr4_2:73469873-73469892 None:intergenic 40.0%
TTGTTTGAACCAGCAAGCTT+GGG - chr4_2:73470035-73470054 None:intergenic 40.0%
TTTGTTTGAACCAGCAAGCT+TGG - chr4_2:73470036-73470055 None:intergenic 40.0%
! TCTTTTCCGATATACTTCGC+AGG + chr4_2:73470352-73470371 Msa0621380:intron 40.0%
CAAGAACCTGCGAAGTATAT+CGG - chr4_2:73470361-73470380 None:intergenic 40.0%
TGTAAGGAAATTAAAGGGCG+AGG - chr4_2:73470585-73470604 None:intergenic 40.0%
ATCAACAAATGGCAACCTCA+TGG + chr4_2:73468773-73468792 Msa0621380:exon 40.0%
TGTAACGAGGAAAAGGGATA+TGG - chr4_2:73468960-73468979 None:intergenic 40.0%
GAAACTAAACCCACTTGGAT+TGG + chr4_2:73469189-73469208 Msa0621380:intron 40.0%
!!! GCCTAGTGGTATTGACTTTT+AGG + chr4_2:73469211-73469230 Msa0621380:intron 40.0%
GAATTGAACCTGAGATCTCA+AGG - chr4_2:73469249-73469268 None:intergenic 40.0%
! TAAAGTACTTGTGCTATGCG+GGG + chr4_2:73469697-73469716 Msa0621380:intron 40.0%
GTGCATGGACATATTGTAGT+TGG - chr4_2:73469873-73469892 None:intergenic 40.0%
TTGTTTGAACCAGCAAGCTT+GGG - chr4_2:73470035-73470054 None:intergenic 40.0%
TTTGTTTGAACCAGCAAGCT+TGG - chr4_2:73470036-73470055 None:intergenic 40.0%
! TCTTTTCCGATATACTTCGC+AGG + chr4_2:73470352-73470371 Msa0621380:intron 40.0%
CAAGAACCTGCGAAGTATAT+CGG - chr4_2:73470361-73470380 None:intergenic 40.0%
TGTAAGGAAATTAAAGGGCG+AGG - chr4_2:73470585-73470604 None:intergenic 40.0%
GCAACATTGTGCCATCTTTC+TGG - chr4_2:73468856-73468875 None:intergenic 45.0%
ATGGCACAATGTTGCCAAAG+TGG + chr4_2:73468861-73468880 Msa0621380:CDS 45.0%
CACAATGTTGCCAAAGTGGT+TGG + chr4_2:73468865-73468884 Msa0621380:CDS 45.0%
GATGTTCAACGTATTGAGCG+TGG + chr4_2:73468934-73468953 Msa0621380:CDS 45.0%
GAGATCTCAAGGAAACTCTC+AGG - chr4_2:73469238-73469257 None:intergenic 45.0%
GAGAGTTTCCTTGAGATCTC+AGG + chr4_2:73469238-73469257 Msa0621380:intron 45.0%
TATGCGGGGTCCATATTGAA+TGG + chr4_2:73469711-73469730 Msa0621380:intron 45.0%
ATGCGGGGTCCATATTGAAT+GGG + chr4_2:73469712-73469731 Msa0621380:intron 45.0%
TGTTTGAACCAGCAAGCTTG+GGG - chr4_2:73470034-73470053 None:intergenic 45.0%
!! AGAAGAGTGCCACATTCACT+TGG - chr4_2:73470510-73470529 None:intergenic 45.0%
GCAACATTGTGCCATCTTTC+TGG - chr4_2:73468856-73468875 None:intergenic 45.0%
ATGGCACAATGTTGCCAAAG+TGG + chr4_2:73468861-73468880 Msa0621380:CDS 45.0%
CACAATGTTGCCAAAGTGGT+TGG + chr4_2:73468865-73468884 Msa0621380:CDS 45.0%
GATGTTCAACGTATTGAGCG+TGG + chr4_2:73468934-73468953 Msa0621380:CDS 45.0%
GAGATCTCAAGGAAACTCTC+AGG - chr4_2:73469238-73469257 None:intergenic 45.0%
GAGAGTTTCCTTGAGATCTC+AGG + chr4_2:73469238-73469257 Msa0621380:intron 45.0%
TATGCGGGGTCCATATTGAA+TGG + chr4_2:73469711-73469730 Msa0621380:intron 45.0%
ATGCGGGGTCCATATTGAAT+GGG + chr4_2:73469712-73469731 Msa0621380:intron 45.0%
TGTTTGAACCAGCAAGCTTG+GGG - chr4_2:73470034-73470053 None:intergenic 45.0%
!! AGAAGAGTGCCACATTCACT+TGG - chr4_2:73470510-73470529 None:intergenic 45.0%
!! TTAATATCTAATTAAATTTA+GGG - chr4_2:73469111-73469130 None:intergenic 5.0%
!! TTTAATATCTAATTAAATTT+AGG - chr4_2:73469112-73469131 None:intergenic 5.0%
!!! TAAATACAATATTTTATTTT+TGG - chr4_2:73470613-73470632 None:intergenic 5.0%
!! TTAATATCTAATTAAATTTA+GGG - chr4_2:73469111-73469130 None:intergenic 5.0%
!! TTTAATATCTAATTAAATTT+AGG - chr4_2:73469112-73469131 None:intergenic 5.0%
!!! TAAATACAATATTTTATTTT+TGG - chr4_2:73470613-73470632 None:intergenic 5.0%
ACCACTAGGCCAATCCAAGT+GGG - chr4_2:73469201-73469220 None:intergenic 50.0%
TACCACTAGGCCAATCCAAG+TGG - chr4_2:73469202-73469221 None:intergenic 50.0%
TGCACCTTGCCAAGTGAATG+TGG + chr4_2:73470498-73470517 Msa0621380:three_prime_UTR 50.0%
AGTGCCACATTCACTTGGCA+AGG - chr4_2:73470505-73470524 None:intergenic 50.0%
ACCACTAGGCCAATCCAAGT+GGG - chr4_2:73469201-73469220 None:intergenic 50.0%
TACCACTAGGCCAATCCAAG+TGG - chr4_2:73469202-73469221 None:intergenic 50.0%
TGCACCTTGCCAAGTGAATG+TGG + chr4_2:73470498-73470517 Msa0621380:three_prime_UTR 50.0%
AGTGCCACATTCACTTGGCA+AGG - chr4_2:73470505-73470524 None:intergenic 50.0%
!! ACCCACTTGGATTGGCCTAG+TGG + chr4_2:73469197-73469216 Msa0621380:intron 55.0%
ATCAATGGCCCCAAGCTTGC+TGG + chr4_2:73470023-73470042 Msa0621380:intron 55.0%
!! ACCCACTTGGATTGGCCTAG+TGG + chr4_2:73469197-73469216 Msa0621380:intron 55.0%
ATCAATGGCCCCAAGCTTGC+TGG + chr4_2:73470023-73470042 Msa0621380:intron 55.0%
! TGGCAACCTCATGGACTGCG+AGG + chr4_2:73468782-73468801 Msa0621380:CDS 60.0%
GTTCTGCCTCGCAGTCCATG+AGG - chr4_2:73468791-73468810 None:intergenic 60.0%
! TGGCAACCTCATGGACTGCG+AGG + chr4_2:73468782-73468801 Msa0621380:CDS 60.0%
GTTCTGCCTCGCAGTCCATG+AGG - chr4_2:73468791-73468810 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 73468717 73470716 73468717 ID=Msa0621380;Name=Msa0621380
chr4_2 mRNA 73468717 73470716 73468717 ID=Msa0621380-mRNA-1;Parent=Msa0621380;Name=Msa0621380-mRNA-1;_AED=0.35;_eAED=0.35;_QI=64|0|0.5|1|0|0.5|2|343|72
chr4_2 exon 73468717 73468999 73468717 ID=Msa0621380-mRNA-1:exon:22066;Parent=Msa0621380-mRNA-1
chr4_2 exon 73470374 73470716 73470374 ID=Msa0621380-mRNA-1:exon:22067;Parent=Msa0621380-mRNA-1
chr4_2 five_prime_UTR 73468717 73468780 73468717 ID=Msa0621380-mRNA-1:five_prime_utr;Parent=Msa0621380-mRNA-1
chr4_2 CDS 73468781 73468999 73468781 ID=Msa0621380-mRNA-1:cds;Parent=Msa0621380-mRNA-1
chr4_2 three_prime_UTR 73470374 73470716 73470374 ID=Msa0621380-mRNA-1:three_prime_utr;Parent=Msa0621380-mRNA-1
Gene Sequence

>Msa0621380

ATGGCAACCTCATGGACTGCGAGGCAGAACAAACTGTTTGAACAAGCATTGGCTTTATATGATAGAGAAACTCCAGAAAGATGGCACAATGTTGCCAAAGTGGTTGGAAAATCAGTTGAAGATGTTAAGAGTCACTATGAGATCCTCAAAGAAGATGTTCAACGTATTGAGCGTGGCCATATCCCTTTTCCTCGTTACAAAACTAACACCAACTCCTAA

Protein sequence

>Msa0621380

MATSWTARQNKLFEQALALYDRETPERWHNVAKVVGKSVEDVKSHYEILKEDVQRIERGHIPFPRYKTNTNS*