Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714990 | XP_003611751.2 | 93.056 | 288 | 19 | 1 | 1 | 287 | 1 | 288 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714990 | sp|P22335|HSF24_SOLPE | 55.911 | 313 | 100 | 10 | 1 | 287 | 1 | 301 | 2.36e-96 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714990 | I3SQU1 | 93.056 | 288 | 19 | 1 | 1 | 287 | 1 | 288 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0714990 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0714990 | 0.804938 | 1.699039e-49 | -8.615850e-47 |
| Msa0033850 | Msa0714990 | 0.818055 | 2.393084e-52 | -8.615850e-47 |
| Msa0042550 | Msa0714990 | 0.807088 | 5.997302e-50 | -8.615850e-47 |
| Msa0045910 | Msa0714990 | 0.809672 | 1.685293e-50 | -8.615850e-47 |
| Msa0064110 | Msa0714990 | 0.801991 | 6.934568e-49 | -8.615850e-47 |
| Msa0076700 | Msa0714990 | 0.806648 | 7.427335e-50 | -8.615850e-47 |
| Msa0081620 | Msa0714990 | 0.828982 | 6.640390e-55 | -8.615850e-47 |
| Msa0092410 | Msa0714990 | 0.836025 | 1.191570e-56 | -8.615850e-47 |
| Msa0102140 | Msa0714990 | 0.809784 | 1.594323e-50 | -8.615850e-47 |
| Msa0624120 | Msa0714990 | 0.834709 | 2.562392e-56 | -8.615850e-47 |
| Msa0641340 | Msa0714990 | 0.803172 | 3.958183e-49 | -8.615850e-47 |
| Msa0661720 | Msa0714990 | 0.803863 | 2.845110e-49 | -8.615850e-47 |
| Msa0714990 | Msa0721340 | 0.844428 | 7.606473e-59 | -8.615850e-47 |
| Msa0714990 | Msa0750810 | 0.815025 | 1.142080e-51 | -8.615850e-47 |
| Msa0714990 | Msa0757020 | 0.993369 | 2.923894e-199 | -8.615850e-47 |
| Msa0714990 | Msa0758250 | 0.833488 | 5.180640e-56 | -8.615850e-47 |
| Msa0714990 | Msa0779260 | 0.802845 | 4.623522e-49 | -8.615850e-47 |
| Msa0714990 | Msa0794210 | 0.831440 | 1.667759e-55 | -8.615850e-47 |
| Msa0714990 | Msa0798010 | 0.901662 | 2.136577e-78 | -8.615850e-47 |
| Msa0714990 | Msa0808100 | 0.807025 | 6.183537e-50 | -8.615850e-47 |
| Msa0714990 | Msa0809140 | 0.806639 | 7.460599e-50 | -8.615850e-47 |
| Msa0714990 | Msa0836650 | 0.988179 | 5.163631e-173 | -8.615850e-47 |
| Msa0714990 | Msa0837870 | 0.810629 | 1.048022e-50 | -8.615850e-47 |
| Msa0714990 | Msa0845070 | 0.820602 | 6.290535e-53 | -8.615850e-47 |
| Msa0714990 | Msa0862280 | 0.801367 | 9.308512e-49 | -8.615850e-47 |
| Msa0714990 | Msa0865970 | 0.816162 | 6.374244e-52 | -8.615850e-47 |
| Msa0714990 | Msa0866070 | 0.823209 | 1.566867e-53 | -8.615850e-47 |
| Msa0714990 | Msa0902830 | 0.829686 | 4.479867e-55 | -8.615850e-47 |
| Msa0714990 | Msa0972810 | 0.814712 | 1.339773e-51 | -8.615850e-47 |
| Msa0714990 | Msa1024680 | 0.823226 | 1.552444e-53 | -8.615850e-47 |
| Msa0714990 | Msa1026640 | 0.800178 | 1.627733e-48 | -8.615850e-47 |
| Msa0714990 | Msa1029390 | 0.802821 | 4.676251e-49 | -8.615850e-47 |
| Msa0714990 | Msa1034700 | 0.802468 | 5.530714e-49 | -8.615850e-47 |
| Msa0714990 | Msa1043120 | 0.845431 | 4.079124e-59 | -8.615850e-47 |
| Msa0714990 | Msa1063420 | 0.814283 | 1.666994e-51 | -8.615850e-47 |
| Msa0714990 | Msa1073660 | 0.808239 | 3.415185e-50 | -8.615850e-47 |
| Msa0714990 | Msa1077340 | 0.805949 | 1.042594e-49 | -8.615850e-47 |
| Msa0714990 | Msa1115280 | 0.818742 | 1.672059e-52 | -8.615850e-47 |
| Msa0714990 | Msa1143020 | 0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa0714990 | Msa1152410 | 0.805363 | 1.384116e-49 | -8.615850e-47 |
| Msa0714990 | Msa1173490 | 0.812118 | 4.979885e-51 | -8.615850e-47 |
| Msa0714990 | Msa1184790 | 0.800028 | 1.746734e-48 | -8.615850e-47 |
| Msa0714990 | Msa1209190 | 0.820810 | 5.635473e-53 | -8.615850e-47 |
| Msa0714990 | Msa1214170 | 0.824981 | 6.012110e-54 | -8.615850e-47 |
| Msa0714990 | Msa1225200 | 0.818487 | 1.910586e-52 | -8.615850e-47 |
| Msa0714990 | Msa1225600 | 0.827907 | 1.207322e-54 | -8.615850e-47 |
| Msa0714990 | Msa1235390 | 0.819224 | 1.299205e-52 | -8.615850e-47 |
| Msa0714990 | Msa1246700 | 0.812420 | 4.277952e-51 | -8.615850e-47 |
| Msa0714990 | Msa1259270 | 0.807442 | 5.045655e-50 | -8.615850e-47 |
| Msa0714990 | Msa1291450 | 0.805262 | 1.453277e-49 | -8.615850e-47 |
| Msa0714990 | Msa1332050 | 0.807812 | 4.209549e-50 | -8.615850e-47 |
| Msa0714990 | Msa1335230 | 0.819200 | 1.315958e-52 | -8.615850e-47 |
| Msa0714990 | Msa1343250 | 0.800886 | 1.167770e-48 | -8.615850e-47 |
| Msa0714990 | Msa1349450 | 0.827285 | 1.702197e-54 | -8.615850e-47 |
| Msa0714990 | Msa1359320 | 0.844965 | 5.451077e-59 | -8.615850e-47 |
| Msa0714990 | Msa1360020 | 0.827046 | 1.941655e-54 | -8.615850e-47 |
| Msa0714990 | Msa1372150 | 0.815172 | 1.059113e-51 | -8.615850e-47 |
| Msa0714990 | Msa1376450 | 0.814954 | 1.184142e-51 | -8.615850e-47 |
| Msa0714990 | Msa1423820 | 0.803243 | 3.825520e-49 | -8.615850e-47 |
| Msa0714990 | Msa1424630 | 0.842313 | 2.790021e-58 | -8.615850e-47 |
| Msa0714990 | Msa1430550 | 0.851170 | 1.056554e-60 | -8.615850e-47 |
| Msa0714990 | Msa1465180 | 0.806410 | 8.337722e-50 | -8.615850e-47 |
| Msa0136630 | Msa0714990 | 0.803730 | 3.032260e-49 | -8.615850e-47 |
| Msa0139000 | Msa0714990 | 0.803353 | 3.629501e-49 | -8.615850e-47 |
| Msa0152560 | Msa0714990 | 0.809783 | 1.595614e-50 | -8.615850e-47 |
| Msa0173960 | Msa0714990 | 0.816626 | 5.020074e-52 | -8.615850e-47 |
| Msa0174260 | Msa0714990 | 0.822872 | 1.877592e-53 | -8.615850e-47 |
| Msa0178510 | Msa0714990 | 0.815778 | 7.764714e-52 | -8.615850e-47 |
| Msa0186320 | Msa0714990 | 0.808848 | 2.531291e-50 | -8.615850e-47 |
| Msa0186950 | Msa0714990 | 0.821855 | 3.234114e-53 | -8.615850e-47 |
| Msa0187830 | Msa0714990 | 0.824854 | 6.442366e-54 | -8.615850e-47 |
| Msa0190530 | Msa0714990 | 0.800767 | 1.235094e-48 | -8.615850e-47 |
| Msa0190950 | Msa0714990 | 0.857365 | 1.714875e-62 | -8.615850e-47 |
| Msa0194010 | Msa0714990 | 0.805454 | 1.324478e-49 | -8.615850e-47 |
| Msa0201570 | Msa0714990 | 0.824293 | 8.732725e-54 | -8.615850e-47 |
| Msa0222870 | Msa0714990 | 0.811448 | 6.966304e-51 | -8.615850e-47 |
| Msa0222980 | Msa0714990 | 0.818322 | 2.082647e-52 | -8.615850e-47 |
| Msa0233270 | Msa0714990 | 0.847200 | 1.344392e-59 | -8.615850e-47 |
| Msa0234590 | Msa0714990 | 0.817096 | 3.937211e-52 | -8.615850e-47 |
| Msa0235880 | Msa0714990 | 0.813714 | 2.225927e-51 | -8.615850e-47 |
| Msa0386010 | Msa0714990 | 0.800186 | 1.621783e-48 | -8.615850e-47 |
| Msa0403490 | Msa0714990 | 0.829574 | 4.770145e-55 | -8.615850e-47 |
| Msa0408340 | Msa0714990 | 0.837136 | 6.211455e-57 | -8.615850e-47 |
| Msa0429090 | Msa0714990 | 0.813738 | 2.199084e-51 | -8.615850e-47 |
| Msa0463270 | Msa0714990 | 0.800993 | 1.110586e-48 | -8.615850e-47 |
| Msa0475500 | Msa0714990 | 0.801414 | 9.107037e-49 | -8.615850e-47 |
| Msa0240270 | Msa0714990 | 0.836525 | 8.891009e-57 | -8.615850e-47 |
| Msa0253280 | Msa0714990 | 0.801314 | 9.545625e-49 | -8.615850e-47 |
| Msa0264310 | Msa0714990 | 0.805849 | 1.094287e-49 | -8.615850e-47 |
| Msa0269560 | Msa0714990 | 0.857924 | 1.171149e-62 | -8.615850e-47 |
| Msa0271550 | Msa0714990 | 0.821214 | 4.548240e-53 | -8.615850e-47 |
| Msa0277410 | Msa0714990 | 0.826569 | 2.524554e-54 | -8.615850e-47 |
| Msa0282720 | Msa0714990 | 0.804891 | 1.737755e-49 | -8.615850e-47 |
| Msa0284450 | Msa0714990 | 0.824282 | 8.783766e-54 | -8.615850e-47 |
| Msa0311470 | Msa0714990 | 0.836743 | 7.826214e-57 | -8.615850e-47 |
| Msa0311600 | Msa0714990 | 0.817756 | 2.795689e-52 | -8.615850e-47 |
| Msa0319290 | Msa0714990 | 0.812129 | 4.951037e-51 | -8.615850e-47 |
| Msa0501410 | Msa0714990 | 0.817171 | 3.786890e-52 | -8.615850e-47 |
| Msa0506860 | Msa0714990 | 0.822847 | 1.902917e-53 | -8.615850e-47 |
| Msa0514610 | Msa0714990 | 0.801578 | 8.429888e-49 | -8.615850e-47 |
| Msa0524440 | Msa0714990 | 0.807672 | 4.508123e-50 | -8.615850e-47 |
| Msa0538160 | Msa0714990 | 0.814629 | 1.397482e-51 | -8.615850e-47 |
| Msa0566750 | Msa0714990 | 0.800836 | 1.195646e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714990 | MtrunA17_Chr5g0402291 | 93.056 | 288 | 19 | 1 | 1 | 287 | 1 | 288 | 0.0 | 535 |
| Msa0714990 | MtrunA17_Chr8g0375041 | 49.811 | 265 | 103 | 6 | 1 | 255 | 1 | 245 | 5.90e-76 | 232 |
| Msa0714990 | MtrunA17_Chr5g0397881 | 45.353 | 269 | 119 | 7 | 2 | 252 | 17 | 275 | 1.13e-64 | 206 |
| Msa0714990 | MtrunA17_Chr3g0134031 | 47.706 | 218 | 84 | 5 | 2 | 193 | 17 | 230 | 7.84e-57 | 187 |
| Msa0714990 | MtrunA17_Chr1g0203601 | 40.613 | 261 | 103 | 6 | 2 | 235 | 11 | 246 | 3.46e-52 | 172 |
| Msa0714990 | MtrunA17_Chr6g0472421 | 44.651 | 215 | 81 | 2 | 2 | 191 | 26 | 227 | 2.19e-51 | 172 |
| Msa0714990 | MtrunA17_Chr7g0257331 | 44.385 | 187 | 80 | 1 | 3 | 189 | 16 | 178 | 1.50e-49 | 164 |
| Msa0714990 | MtrunA17_Chr5g0441531 | 40.164 | 244 | 117 | 6 | 2 | 235 | 18 | 242 | 5.69e-49 | 163 |
| Msa0714990 | MtrunA17_Chr5g0410881 | 47.514 | 181 | 69 | 3 | 1 | 181 | 24 | 178 | 2.47e-44 | 157 |
| Msa0714990 | MtrunA17_Chr7g0260331 | 69.474 | 95 | 29 | 0 | 6 | 100 | 46 | 140 | 1.01e-43 | 152 |
| Msa0714990 | MtrunA17_Chr6g0467041 | 58.407 | 113 | 44 | 1 | 8 | 117 | 21 | 133 | 1.20e-42 | 149 |
| Msa0714990 | MtrunA17_Chr8g0379701 | 39.720 | 214 | 91 | 4 | 5 | 217 | 8 | 184 | 2.67e-41 | 147 |
| Msa0714990 | MtrunA17_Chr1g0185131 | 63.636 | 99 | 36 | 0 | 7 | 105 | 30 | 128 | 4.17e-40 | 142 |
| Msa0714990 | MtrunA17_Chr4g0071051 | 64.894 | 94 | 33 | 0 | 6 | 99 | 98 | 191 | 8.23e-40 | 143 |
| Msa0714990 | MtrunA17_Chr4g0039891 | 40.000 | 200 | 88 | 3 | 9 | 208 | 12 | 179 | 3.57e-39 | 143 |
| Msa0714990 | MtrunA17_Chr8g0378061 | 56.757 | 111 | 45 | 1 | 10 | 117 | 23 | 133 | 1.18e-38 | 141 |
| Msa0714990 | MtrunA17_Chr3g0135831 | 56.481 | 108 | 45 | 1 | 6 | 113 | 43 | 148 | 1.05e-37 | 137 |
| Msa0714990 | MtrunA17_Chr2g0284481 | 40.426 | 188 | 79 | 4 | 9 | 193 | 15 | 172 | 1.17e-37 | 137 |
| Msa0714990 | MtrunA17_Chr2g0330821 | 53.846 | 117 | 51 | 1 | 6 | 119 | 76 | 192 | 3.40e-37 | 135 |
| Msa0714990 | MtrunA17_Chr1g0204741 | 35.961 | 203 | 116 | 3 | 6 | 208 | 37 | 225 | 4.89e-37 | 134 |
| Msa0714990 | MtrunA17_Chr6g0485571 | 58.824 | 102 | 42 | 0 | 1 | 102 | 3 | 104 | 8.48e-37 | 134 |
| Msa0714990 | MtrunA17_Chr4g0047421 | 36.139 | 202 | 103 | 5 | 6 | 203 | 30 | 209 | 3.42e-35 | 126 |
| Msa0714990 | MtrunA17_Chr8g0392001 | 44.382 | 178 | 65 | 5 | 8 | 181 | 21 | 168 | 2.57e-34 | 127 |
| Msa0714990 | MtrunA17_Chr1g0179321 | 62.121 | 66 | 25 | 0 | 3 | 68 | 43 | 108 | 9.84e-23 | 90.5 |
| Msa0714990 | MtrunA17_Chr4g0023771 | 55.385 | 65 | 29 | 0 | 2 | 66 | 8 | 72 | 2.88e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0714990 | AT4G36990.1 | 50.168 | 297 | 118 | 7 | 2 | 287 | 7 | 284 | 5.59e-82 | 249 |
| Msa0714990 | AT5G62020.1 | 49.756 | 205 | 97 | 3 | 2 | 202 | 16 | 218 | 2.32e-55 | 181 |
| Msa0714990 | AT4G11660.1 | 42.125 | 273 | 111 | 9 | 2 | 233 | 52 | 318 | 1.45e-53 | 179 |
| Msa0714990 | AT1G46264.1 | 43.925 | 214 | 95 | 5 | 4 | 197 | 29 | 237 | 2.64e-53 | 177 |
| Msa0714990 | AT2G41690.1 | 45.455 | 187 | 90 | 2 | 7 | 190 | 38 | 215 | 4.24e-49 | 163 |
| Msa0714990 | AT1G32330.1 | 49.432 | 176 | 65 | 2 | 6 | 181 | 34 | 185 | 6.91e-47 | 164 |
| Msa0714990 | AT1G32330.2 | 50.000 | 176 | 64 | 3 | 6 | 181 | 34 | 185 | 7.60e-47 | 164 |
| Msa0714990 | AT4G17750.1 | 69.388 | 98 | 30 | 0 | 5 | 102 | 48 | 145 | 3.76e-44 | 157 |
| Msa0714990 | AT2G26150.1 | 40.306 | 196 | 93 | 2 | 5 | 194 | 40 | 217 | 6.71e-42 | 147 |
| Msa0714990 | AT2G26150.4 | 40.306 | 196 | 93 | 2 | 5 | 194 | 40 | 217 | 6.71e-42 | 147 |
| Msa0714990 | AT3G22830.1 | 38.318 | 214 | 124 | 3 | 5 | 217 | 57 | 263 | 9.65e-42 | 148 |
| Msa0714990 | AT4G13980.1 | 62.000 | 100 | 38 | 0 | 10 | 109 | 24 | 123 | 8.68e-41 | 147 |
| Msa0714990 | AT3G02990.1 | 40.625 | 256 | 113 | 8 | 5 | 258 | 19 | 237 | 1.00e-40 | 147 |
| Msa0714990 | AT3G24520.1 | 38.426 | 216 | 83 | 4 | 8 | 216 | 16 | 188 | 1.27e-39 | 141 |
| Msa0714990 | AT5G16820.1 | 69.565 | 92 | 28 | 0 | 9 | 100 | 27 | 118 | 2.55e-39 | 143 |
| Msa0714990 | AT5G16820.2 | 69.565 | 92 | 28 | 0 | 9 | 100 | 27 | 118 | 2.55e-39 | 143 |
| Msa0714990 | AT5G43840.1 | 56.881 | 109 | 47 | 0 | 5 | 113 | 15 | 123 | 8.61e-39 | 137 |
| Msa0714990 | AT3G51910.1 | 58.654 | 104 | 42 | 1 | 6 | 109 | 26 | 128 | 4.27e-38 | 135 |
| Msa0714990 | AT5G03720.2 | 42.246 | 187 | 82 | 3 | 9 | 189 | 55 | 221 | 5.44e-38 | 139 |
| Msa0714990 | AT5G03720.1 | 42.246 | 187 | 82 | 3 | 9 | 189 | 55 | 221 | 5.44e-38 | 139 |
| Msa0714990 | AT5G54070.1 | 60.870 | 92 | 36 | 0 | 8 | 99 | 70 | 161 | 1.07e-36 | 133 |
| Msa0714990 | AT3G63350.1 | 57.732 | 97 | 41 | 0 | 3 | 99 | 22 | 118 | 6.90e-35 | 127 |
| Msa0714990 | AT4G18880.1 | 55.172 | 116 | 52 | 0 | 5 | 120 | 11 | 126 | 2.47e-33 | 126 |
| Msa0714990 | AT1G67970.1 | 57.273 | 110 | 44 | 2 | 8 | 116 | 18 | 125 | 2.67e-33 | 125 |
| Msa0714990 | AT5G45710.3 | 41.146 | 192 | 77 | 3 | 5 | 193 | 9 | 167 | 7.96e-33 | 123 |
| Msa0714990 | AT5G45710.1 | 41.146 | 192 | 77 | 3 | 5 | 193 | 9 | 167 | 7.96e-33 | 123 |
| Msa0714990 | AT4G18870.1 | 44.565 | 92 | 51 | 0 | 5 | 96 | 142 | 233 | 2.79e-22 | 94.4 |
| Msa0714990 | AT4G18870.1 | 45.745 | 94 | 46 | 3 | 5 | 96 | 9 | 99 | 6.85e-20 | 87.8 |
| Msa0714990 | AT1G77570.1 | 40.909 | 88 | 47 | 3 | 10 | 93 | 27 | 113 | 1.20e-13 | 67.4 |
Find 80 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTCGTTTCTTCCTTTC+TGG | 0.040301 | 5_1:-7815682 | Msa0714990:five_prime_UTR |
| CCACATCTAAGAAATTAATT+TGG | 0.180721 | 5_1:+7815756 | None:intergenic |
| ATATTCTCCTTCAATGTCTT+TGG | 0.217872 | 5_1:+7815829 | None:intergenic |
| TCCTTTCTGGTTTCTATTGT+TGG | 0.230031 | 5_1:-7815669 | Msa0714990:five_prime_UTR |
| AGAACCAACGTCACTTATTA+AGG | 0.240591 | 5_1:-7815896 | Msa0714990:five_prime_UTR |
| GAAAGCTTGTGCCAGATAAA+TGG | 0.251473 | 5_1:-7813898 | Msa0714990:CDS |
| ATAATTCCCCATACGAAAAT+AGG | 0.260531 | 5_1:+7815791 | None:intergenic |
| TTAGATGTGGCTTAAGCTAA+TGG | 0.287412 | 5_1:-7815743 | Msa0714990:five_prime_UTR |
| TTTGCAAATTCCCATTTATC+TGG | 0.289664 | 5_1:+7813887 | None:intergenic |
| TTGTTGTGCTTAAAATATTT+AGG | 0.304096 | 5_1:+7815316 | None:intergenic |
| CTGGTTTCTATTGTTGGGAT+TGG | 0.306018 | 5_1:-7815663 | Msa0714990:five_prime_UTR |
| CCTTTCTGGTTTCTATTGTT+GGG | 0.310708 | 5_1:-7815668 | Msa0714990:five_prime_UTR |
| TGGTTTCTATTGTTGGGATT+GGG | 0.347860 | 5_1:-7815662 | Msa0714990:five_prime_UTR |
| GTTTGAAATTGTTTGGTGTT+TGG | 0.347895 | 5_1:-7813430 | Msa0714990:CDS |
| GGATCCTGCTCCGTCGTTGC+CGG | 0.352068 | 5_1:+7813736 | None:intergenic |
| ATTTATCTGGCACAAGCTTT+CGG | 0.357484 | 5_1:+7813900 | None:intergenic |
| TATTCTCCTTCAATGTCTTT+GGG | 0.359473 | 5_1:+7815830 | None:intergenic |
| CCGTCGTTGCCGGAGTTTGA+TGG | 0.360239 | 5_1:+7813746 | None:intergenic |
| CGAAACCTTGAGTTGTGAAT+TGG | 0.361410 | 5_1:-7813606 | Msa0714990:CDS |
| CACATCTAAGAAATTAATTT+GGG | 0.362304 | 5_1:+7815757 | None:intergenic |
| GTTGGTGAAGTTGAAGAAAA+TGG | 0.365129 | 5_1:-7813461 | Msa0714990:CDS |
| TGTTATCATGTTGTCTGGTT+TGG | 0.391397 | 5_1:-7812926 | Msa0714990:three_prime_UTR |
| CGTGTGGAACCGGTTTCATT+TGG | 0.394345 | 5_1:-7815954 | Msa0714990:five_prime_UTR |
| GTTGTTGTTTCCACTGATCC+AGG | 0.401148 | 5_1:+7813683 | None:intergenic |
| CTCGATAAGTTAACATATTG+AGG | 0.405483 | 5_1:+7813656 | None:intergenic |
| ATTATGCGATCGATTTGATC+TGG | 0.408543 | 5_1:+7813521 | None:intergenic |
| AGAGATTGTTTGAAATTGTT+TGG | 0.415249 | 5_1:-7813437 | Msa0714990:CDS |
| GTTGTTGTTATCATGTTGTC+TGG | 0.416787 | 5_1:-7812931 | Msa0714990:three_prime_UTR |
| TCTATTGGTACGTGTGGAAC+CGG | 0.422455 | 5_1:-7815964 | Msa0714990:five_prime_UTR |
| CTTGAACACATGAAAGAAAC+AGG | 0.422879 | 5_1:+7813108 | None:intergenic |
| CATATCTATCATCAATCTAT+TGG | 0.424088 | 5_1:-7815979 | Msa0714990:five_prime_UTR |
| GAGGCCCACCATAGCTCAAT+TGG | 0.429636 | 5_1:+7813351 | None:intergenic |
| CATTATTGACCAAATGAAAC+CGG | 0.432836 | 5_1:+7815945 | None:intergenic |
| TAATTAGTTATCATCATGGT+TGG | 0.448542 | 5_1:-7813152 | Msa0714990:three_prime_UTR |
| TGAGTTGGAGGAAGAGGTTG+AGG | 0.450915 | 5_1:+7813712 | None:intergenic |
| AAAGCTTGTGCCAGATAAAT+GGG | 0.453955 | 5_1:-7813897 | Msa0714990:CDS |
| CCAAATTAATTTCTTAGATG+TGG | 0.468547 | 5_1:-7815756 | Msa0714990:five_prime_UTR |
| AATGTCGCAGCGGTCGGCGC+CGG | 0.469760 | 5_1:-7815464 | Msa0714990:CDS |
| CCAACGTCACTTATTAAGGT+TGG | 0.477628 | 5_1:-7815892 | Msa0714990:five_prime_UTR |
| TGGAGAGTTGTCATTGATGC+TGG | 0.489530 | 5_1:+7813766 | None:intergenic |
| ACAACCGTCGTCACAACCCC+TGG | 0.491280 | 5_1:-7813801 | Msa0714990:CDS |
| ATATACTAATAGTCAATGTA+TGG | 0.499722 | 5_1:-7813012 | Msa0714990:three_prime_UTR |
| TCTAAAAGACAATTTAAATG+TGG | 0.501767 | 5_1:-7813546 | Msa0714990:CDS |
| CTAAAAGACAATTTAAATGT+GGG | 0.505450 | 5_1:-7813545 | Msa0714990:CDS |
| ATCTGAAATGTGGCAAGCTA+AGG | 0.505904 | 5_1:+7813238 | None:intergenic |
| TATCGGTGAGGAGGTGTTTG+TGG | 0.509612 | 5_1:+7813846 | None:intergenic |
| ACAGTAATTAGTTATCATCA+TGG | 0.520769 | 5_1:-7813156 | Msa0714990:three_prime_UTR |
| AACTCCGGCAACGACGGAGC+AGG | 0.525429 | 5_1:-7813740 | Msa0714990:CDS |
| GTTGGAGGAAGAGGTTGAGG+TGG | 0.526221 | 5_1:+7813715 | None:intergenic |
| GTCTCGCCCAAAGACATTGA+AGG | 0.526921 | 5_1:-7815836 | Msa0714990:five_prime_UTR |
| GAAATAAGCAATAAGAAGAG+AGG | 0.527898 | 5_1:-7813383 | Msa0714990:CDS |
| TTGTTGTTTCCACTGATCCA+GGG | 0.529235 | 5_1:+7813684 | None:intergenic |
| TGGTGGGCCTCGAGCTAAAG+TGG | 0.533968 | 5_1:-7813339 | Msa0714990:CDS |
| AATTAGTTATCATCATGGTT+GGG | 0.534493 | 5_1:-7813151 | Msa0714990:three_prime_UTR |
| ATATTAGTTGAAGGGTTGAT+CGG | 0.535066 | 5_1:-7815492 | Msa0714990:five_prime_UTR |
| ACGTGCCAATTCACAACTCA+AGG | 0.543571 | 5_1:+7813601 | None:intergenic |
| CGACGGATGATGTGATATCA+TGG | 0.550146 | 5_1:-7815399 | Msa0714990:CDS |
| CATCAATCTATTGGTACGTG+TGG | 0.562918 | 5_1:-7815970 | Msa0714990:five_prime_UTR |
| AAAGAAACAATGCGAAGAGT+TGG | 0.565353 | 5_1:-7813576 | Msa0714990:CDS |
| GCTTCCAGGGGTTGTGACGA+CGG | 0.568930 | 5_1:+7813797 | None:intergenic |
| TTGTGACGACGGTTGTGAGA+TGG | 0.569926 | 5_1:+7813808 | None:intergenic |
| GACAACTCTCCATCAAACTC+CGG | 0.573360 | 5_1:-7813755 | Msa0714990:CDS |
| CCATCAAACTCCGGCAACGA+CGG | 0.576121 | 5_1:-7813746 | Msa0714990:CDS |
| GTTGTGAACATGATGAAAAG+TGG | 0.578148 | 5_1:-7813284 | Msa0714990:CDS |
| TTTGTTGAAGACGTATCAGA+TGG | 0.581317 | 5_1:-7815434 | Msa0714990:CDS |
| CCCAACAATAGAAACCAGAA+AGG | 0.597826 | 5_1:+7815668 | None:intergenic |
| TTGTTACCCACTTTAGCTCG+AGG | 0.613620 | 5_1:+7813332 | None:intergenic |
| GGCGTTTGATATCGGTGAGG+AGG | 0.622756 | 5_1:+7813837 | None:intergenic |
| GAATCTGTTCAAAATGCGGT+TGG | 0.630106 | 5_1:-7813479 | Msa0714990:CDS |
| GTGATATCATGGAGTGAGAG+TGG | 0.634834 | 5_1:-7815388 | Msa0714990:CDS |
| GAAGACCAATTGAGCTATGG+TGG | 0.636764 | 5_1:-7813356 | Msa0714990:CDS |
| CCAACCTTAATAAGTGACGT+TGG | 0.639053 | 5_1:+7815892 | None:intergenic |
| GGTGGGCCTCGAGCTAAAGT+GGG | 0.645793 | 5_1:-7813338 | Msa0714990:CDS |
| TGTGAAGACCAATTGAGCTA+TGG | 0.646584 | 5_1:-7813359 | Msa0714990:CDS |
| GTTGAAGACGTATCAGATGG+TGG | 0.648048 | 5_1:-7815431 | Msa0714990:CDS |
| TTGTGAATCTGTTCAAAATG+CGG | 0.658508 | 5_1:-7813483 | Msa0714990:CDS |
| GAACATGATGAAAAGTGGCA+AGG | 0.659767 | 5_1:-7813279 | Msa0714990:CDS |
| GCAAACGAAAATTTCAAACG+AGG | 0.682155 | 5_1:-7813869 | Msa0714990:CDS |
| TGCGGCGTTTGATATCGGTG+AGG | 0.683931 | 5_1:+7813834 | None:intergenic |
| AAGACCAATTGAGCTATGGT+GGG | 0.693450 | 5_1:-7813355 | Msa0714990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTATTTTTATTTTAA+TGG | - | chr5_1:7814045-7814064 | Msa0714990:intron | 0.0% |
| !! | GTAATAAAATAACAAAAATA+TGG | + | chr5_1:7812941-7812960 | None:intergenic | 10.0% |
| !!! | AATTATTTTTTAGCAATTTT+TGG | - | chr5_1:7813832-7813851 | Msa0714990:CDS | 10.0% |
| !!! | ATTATTTTTTAGCAATTTTT+GGG | - | chr5_1:7813833-7813852 | Msa0714990:CDS | 10.0% |
| !!! | TATTTTAACAAATAGTAAAT+AGG | + | chr5_1:7814205-7814224 | None:intergenic | 10.0% |
| !!! | TAGTTTTAAAAGTAATAATT+CGG | - | chr5_1:7814764-7814783 | Msa0714990:intron | 10.0% |
| !! | TAGAAAAATATATTAGTTGA+AGG | - | chr5_1:7813459-7813478 | Msa0714990:CDS | 15.0% |
| !! | AGAAAAATATATTAGTTGAA+GGG | - | chr5_1:7813460-7813479 | Msa0714990:CDS | 15.0% |
| !! | AATTATCTTAAACTAATCAA+AGG | + | chr5_1:7813773-7813792 | None:intergenic | 15.0% |
| !!! | TTATTTTTTAGCAATTTTTG+GGG | - | chr5_1:7813834-7813853 | Msa0714990:CDS | 15.0% |
| !!! | TGTTCAAATATTTTGATTTT+AGG | - | chr5_1:7814087-7814106 | Msa0714990:intron | 15.0% |
| !! | AATTATAATACACTTTCATA+GGG | + | chr5_1:7814507-7814526 | None:intergenic | 15.0% |
| !! | AAATTATAATACACTTTCAT+AGG | + | chr5_1:7814508-7814527 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr5_1:7814740-7814759 | Msa0714990:intron | 15.0% |
| !!! | TAAATTTTATATCTGAAATG+TGG | + | chr5_1:7815735-7815754 | None:intergenic | 15.0% |
| !!! | TTTTGATTTAATTGTAATCT+AGG | - | chr5_1:7815884-7815903 | Msa0714990:five_prime_UTR | 15.0% |
| !! | AATAACAAAAATATGGTTGT+TGG | + | chr5_1:7812934-7812953 | None:intergenic | 20.0% |
| !! | CACATCTAAGAAATTAATTT+GGG | + | chr5_1:7813206-7813225 | None:intergenic | 20.0% |
| !! | TTGTTGTGCTTAAAATATTT+AGG | + | chr5_1:7813647-7813666 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACATTAGCAGT+TGG | + | chr5_1:7813797-7813816 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr5_1:7814707-7814726 | Msa0714990:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr5_1:7814750-7814769 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr5_1:7814827-7814846 | Msa0714990:intron | 20.0% |
| !! | TCTAAAAGACAATTTAAATG+TGG | - | chr5_1:7815414-7815433 | Msa0714990:CDS | 20.0% |
| !! | CTAAAAGACAATTTAAATGT+GGG | - | chr5_1:7815415-7815434 | Msa0714990:CDS | 20.0% |
| !! | ATATACTAATAGTCAATGTA+TGG | - | chr5_1:7815948-7815967 | Msa0714990:five_prime_UTR | 20.0% |
| ! | CATATCTATCATCAATCTAT+TGG | - | chr5_1:7812981-7813000 | Msa0714990:three_prime_UTR | 25.0% |
| !! | AAAACTTTCCTATTTTCGTA+TGG | - | chr5_1:7813161-7813180 | Msa0714990:three_prime_UTR | 25.0% |
| !! | AAACTTTCCTATTTTCGTAT+GGG | - | chr5_1:7813162-7813181 | Msa0714990:three_prime_UTR | 25.0% |
| ! | CCACATCTAAGAAATTAATT+TGG | + | chr5_1:7813207-7813226 | None:intergenic | 25.0% |
| ! | CCAAATTAATTTCTTAGATG+TGG | - | chr5_1:7813204-7813223 | Msa0714990:three_prime_UTR | 25.0% |
| !! | GAATGAACTAAATTTTCTGA+AGG | + | chr5_1:7813263-7813282 | None:intergenic | 25.0% |
| ! | CTTCAAATAAAAATCTGTCT+AGG | + | chr5_1:7813360-7813379 | None:intergenic | 25.0% |
| ! | CATGTTCATGAAAAACTAAA+AGG | + | chr5_1:7813727-7813746 | None:intergenic | 25.0% |
| !! | CTACCAAGTAAATTCATTTT+CGG | + | chr5_1:7814270-7814289 | None:intergenic | 25.0% |
| !!! | GATGATTTACTTTTAGTGTT+CGG | - | chr5_1:7814605-7814624 | Msa0714990:intron | 25.0% |
| !!! | TAGGTTTTATCTTAACACTT+TGG | - | chr5_1:7814991-7815010 | Msa0714990:intron | 25.0% |
| !! | AGAGATTGTTTGAAATTGTT+TGG | - | chr5_1:7815523-7815542 | Msa0714990:five_prime_UTR | 25.0% |
| ! | ACAGTAATTAGTTATCATCA+TGG | - | chr5_1:7815804-7815823 | Msa0714990:five_prime_UTR | 25.0% |
| ! | TAATTAGTTATCATCATGGT+TGG | - | chr5_1:7815808-7815827 | Msa0714990:five_prime_UTR | 25.0% |
| ! | AATTAGTTATCATCATGGTT+GGG | - | chr5_1:7815809-7815828 | Msa0714990:five_prime_UTR | 25.0% |
| CATTATTGACCAAATGAAAC+CGG | + | chr5_1:7813018-7813037 | None:intergenic | 30.0% | |
| TATTCTCCTTCAATGTCTTT+GGG | + | chr5_1:7813133-7813152 | None:intergenic | 30.0% | |
| ATATTCTCCTTCAATGTCTT+TGG | + | chr5_1:7813134-7813153 | None:intergenic | 30.0% | |
| ! | AACTTTCCTATTTTCGTATG+GGG | - | chr5_1:7813163-7813182 | Msa0714990:three_prime_UTR | 30.0% |
| ATAATTCCCCATACGAAAAT+AGG | + | chr5_1:7813172-7813191 | None:intergenic | 30.0% | |
| ! | ATATTAGTTGAAGGGTTGAT+CGG | - | chr5_1:7813468-7813487 | Msa0714990:CDS | 30.0% |
| TGATACGTCTTCAACAAAAA+CGG | + | chr5_1:7813524-7813543 | None:intergenic | 30.0% | |
| TGAAAAACTAAAAGGAGAGA+GGG | + | chr5_1:7813719-7813738 | None:intergenic | 30.0% | |
| ATGAAAAACTAAAAGGAGAG+AGG | + | chr5_1:7813720-7813739 | None:intergenic | 30.0% | |
| !!! | AATTTTTGGGGTTCATAACA+AGG | - | chr5_1:7813846-7813865 | Msa0714990:CDS | 30.0% |
| CAATACTTTCCTTCCAATTA+GGG | + | chr5_1:7814177-7814196 | None:intergenic | 30.0% | |
| ACACCGAAAATGAATTTACT+TGG | - | chr5_1:7814264-7814283 | Msa0714990:intron | 30.0% | |
| TTGGTAGATCACAATGAATT+AGG | - | chr5_1:7814283-7814302 | Msa0714990:intron | 30.0% | |
| CACATCTTTACAATTATGCA+CGG | + | chr5_1:7814576-7814595 | None:intergenic | 30.0% | |
| !! | ATTTACTTTTAGTGTTCGGA+TGG | - | chr5_1:7814609-7814628 | Msa0714990:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr5_1:7814658-7814677 | None:intergenic | 30.0% |
| !! | AAGCGACATTCATTTTGAAA+TGG | - | chr5_1:7814857-7814876 | Msa0714990:intron | 30.0% |
| !!! | GACATTCATTTTGAAATGGA+GGG | - | chr5_1:7814897-7814916 | Msa0714990:intron | 30.0% |
| ! | AGTGTTCAATGGTTTACTTT+TGG | - | chr5_1:7814928-7814947 | Msa0714990:intron | 30.0% |
| GAAAACGTGCTAATATTTGA+GGG | + | chr5_1:7814966-7814985 | None:intergenic | 30.0% | |
| AGAAAACGTGCTAATATTTG+AGG | + | chr5_1:7814967-7814986 | None:intergenic | 30.0% | |
| ! | ATTAGCACGTTTTCTTTTCT+AGG | - | chr5_1:7814972-7814991 | Msa0714990:intron | 30.0% |
| TGAGAAAATGCTAATTACCA+TGG | - | chr5_1:7815017-7815036 | Msa0714990:intron | 30.0% | |
| TTTGCAAATTCCCATTTATC+TGG | + | chr5_1:7815076-7815095 | None:intergenic | 30.0% | |
| CTCGATAAGTTAACATATTG+AGG | + | chr5_1:7815307-7815326 | None:intergenic | 30.0% | |
| TTGTGAATCTGTTCAAAATG+CGG | - | chr5_1:7815477-7815496 | Msa0714990:exon | 30.0% | |
| !! | GTTTGAAATTGTTTGGTGTT+TGG | - | chr5_1:7815530-7815549 | Msa0714990:five_prime_UTR | 30.0% |
| GAAATAAGCAATAAGAAGAG+AGG | - | chr5_1:7815577-7815596 | Msa0714990:five_prime_UTR | 30.0% | |
| AGAACCAACGTCACTTATTA+AGG | - | chr5_1:7813064-7813083 | Msa0714990:three_prime_UTR | 35.0% | |
| TTAGATGTGGCTTAAGCTAA+TGG | - | chr5_1:7813217-7813236 | Msa0714990:three_prime_UTR | 35.0% | |
| !! | TCCTTTCTGGTTTCTATTGT+TGG | - | chr5_1:7813291-7813310 | Msa0714990:CDS | 35.0% |
| !! | CCTTTCTGGTTTCTATTGTT+GGG | - | chr5_1:7813292-7813311 | Msa0714990:CDS | 35.0% |
| TGGTTTCTATTGTTGGGATT+GGG | - | chr5_1:7813298-7813317 | Msa0714990:CDS | 35.0% | |
| TTTGTTGAAGACGTATCAGA+TGG | - | chr5_1:7813526-7813545 | Msa0714990:CDS | 35.0% | |
| !!! | GAAACATGCTGATTTTGCAA+GGG | - | chr5_1:7813613-7813632 | Msa0714990:CDS | 35.0% |
| ! | GGTTTTCAATCTTTTCGTGT+AGG | + | chr5_1:7814136-7814155 | None:intergenic | 35.0% |
| ! | CCAATTAGGGTATTCTACTT+CGG | + | chr5_1:7814164-7814183 | None:intergenic | 35.0% |
| AGTAGAATACCCTAATTGGA+AGG | - | chr5_1:7814165-7814184 | Msa0714990:intron | 35.0% | |
| CCAATACTTTCCTTCCAATT+AGG | + | chr5_1:7814178-7814197 | None:intergenic | 35.0% | |
| ! | CCTAATTGGAAGGAAAGTAT+TGG | - | chr5_1:7814175-7814194 | Msa0714990:intron | 35.0% |
| GGACATCGACGTTAAAAAAT+TGG | + | chr5_1:7814555-7814574 | None:intergenic | 35.0% | |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr5_1:7814789-7814808 | Msa0714990:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr5_1:7814793-7814812 | Msa0714990:intron | 35.0% |
| !!! | CGACATTCATTTTGAAATGG+AGG | - | chr5_1:7814896-7814915 | Msa0714990:intron | 35.0% |
| !!! | GGGAGTATTTTAGTGTTCAA+TGG | - | chr5_1:7814917-7814936 | Msa0714990:intron | 35.0% |
| ! | ACCATGGTTTTTGAATTTGC+AGG | - | chr5_1:7815033-7815052 | Msa0714990:intron | 35.0% |
| ! | CCATGGTTTTTGAATTTGCA+GGG | - | chr5_1:7815034-7815053 | Msa0714990:intron | 35.0% |
| ATTTATCTGGCACAAGCTTT+CGG | + | chr5_1:7815063-7815082 | None:intergenic | 35.0% | |
| AAAGCTTGTGCCAGATAAAT+GGG | - | chr5_1:7815063-7815082 | Msa0714990:intron | 35.0% | |
| GCAAACGAAAATTTCAAACG+AGG | - | chr5_1:7815091-7815110 | Msa0714990:intron | 35.0% | |
| AAAGAAACAATGCGAAGAGT+TGG | - | chr5_1:7815384-7815403 | Msa0714990:CDS | 35.0% | |
| !! | ATTATGCGATCGATTTGATC+TGG | + | chr5_1:7815442-7815461 | None:intergenic | 35.0% |
| ! | GTTGGTGAAGTTGAAGAAAA+TGG | - | chr5_1:7815499-7815518 | Msa0714990:five_prime_UTR | 35.0% |
| GTTGTGAACATGATGAAAAG+TGG | - | chr5_1:7815676-7815695 | Msa0714990:five_prime_UTR | 35.0% | |
| CTTGAACACATGAAAGAAAC+AGG | + | chr5_1:7815855-7815874 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTATCATGTTGTC+TGG | - | chr5_1:7816029-7816048 | Msa0714990:five_prime_UTR | 35.0% |
| TGTTATCATGTTGTCTGGTT+TGG | - | chr5_1:7816034-7816053 | Msa0714990:five_prime_UTR | 35.0% | |
| CATCAATCTATTGGTACGTG+TGG | - | chr5_1:7812990-7813009 | Msa0714990:three_prime_UTR | 40.0% | |
| CCAACCTTAATAAGTGACGT+TGG | + | chr5_1:7813071-7813090 | None:intergenic | 40.0% | |
| CCAACGTCACTTATTAAGGT+TGG | - | chr5_1:7813068-7813087 | Msa0714990:three_prime_UTR | 40.0% | |
| CATTCTCGTTTCTTCCTTTC+TGG | - | chr5_1:7813278-7813297 | Msa0714990:CDS | 40.0% | |
| CCCAACAATAGAAACCAGAA+AGG | + | chr5_1:7813295-7813314 | None:intergenic | 40.0% | |
| CTGGTTTCTATTGTTGGGAT+TGG | - | chr5_1:7813297-7813316 | Msa0714990:CDS | 40.0% | |
| !!! | GTGGTGAAAGTTTTGTTGTG+TGG | - | chr5_1:7813591-7813610 | Msa0714990:CDS | 40.0% |
| !!! | GGAAACATGCTGATTTTGCA+AGG | - | chr5_1:7813612-7813631 | Msa0714990:CDS | 40.0% |
| CCGAAGTAGAATACCCTAAT+TGG | - | chr5_1:7814161-7814180 | Msa0714990:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+TGG | + | chr5_1:7814654-7814673 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr5_1:7814792-7814811 | Msa0714990:intron | 40.0% |
| CCCTGCAAATTCAAAAACCA+TGG | + | chr5_1:7815037-7815056 | None:intergenic | 40.0% | |
| GAAAGCTTGTGCCAGATAAA+TGG | - | chr5_1:7815062-7815081 | Msa0714990:intron | 40.0% | |
| !!! | GTTTTTTGAGTTGGAGGAAG+AGG | + | chr5_1:7815257-7815276 | None:intergenic | 40.0% |
| !!! | TGATCCAGGGTTTTTTGAGT+TGG | + | chr5_1:7815266-7815285 | None:intergenic | 40.0% |
| !! | TTGTTGTTTCCACTGATCCA+GGG | + | chr5_1:7815279-7815298 | None:intergenic | 40.0% |
| ! | CGAAACCTTGAGTTGTGAAT+TGG | - | chr5_1:7815354-7815373 | Msa0714990:CDS | 40.0% |
| GAATCTGTTCAAAATGCGGT+TGG | - | chr5_1:7815481-7815500 | Msa0714990:exon | 40.0% | |
| TGTGAAGACCAATTGAGCTA+TGG | - | chr5_1:7815601-7815620 | Msa0714990:five_prime_UTR | 40.0% | |
| AAGACCAATTGAGCTATGGT+GGG | - | chr5_1:7815605-7815624 | Msa0714990:five_prime_UTR | 40.0% | |
| GAACATGATGAAAAGTGGCA+AGG | - | chr5_1:7815681-7815700 | Msa0714990:five_prime_UTR | 40.0% | |
| ! | ATCTGAAATGTGGCAAGCTA+AGG | + | chr5_1:7815725-7815744 | None:intergenic | 40.0% |
| TCTATTGGTACGTGTGGAAC+CGG | - | chr5_1:7812996-7813015 | Msa0714990:three_prime_UTR | 45.0% | |
| ATCGGAGAAAAATGTCGCAG+CGG | - | chr5_1:7813486-7813505 | Msa0714990:CDS | 45.0% | |
| GTTGAAGACGTATCAGATGG+TGG | - | chr5_1:7813529-7813548 | Msa0714990:CDS | 45.0% | |
| !!! | GATGGTGGATGATTTTGCGA+CGG | - | chr5_1:7813544-7813563 | Msa0714990:CDS | 45.0% |
| CGACGGATGATGTGATATCA+TGG | - | chr5_1:7813561-7813580 | Msa0714990:CDS | 45.0% | |
| GTGATATCATGGAGTGAGAG+TGG | - | chr5_1:7813572-7813591 | Msa0714990:CDS | 45.0% | |
| GGGTATTCTACTTCGGTAGA+AGG | + | chr5_1:7814157-7814176 | None:intergenic | 45.0% | |
| ! | GGTTTTGCGGCGTTTGATAT+CGG | + | chr5_1:7815134-7815153 | None:intergenic | 45.0% |
| !! | ACGGTTGTGAGATGGTTTTG+CGG | + | chr5_1:7815147-7815166 | None:intergenic | 45.0% |
| !!! | CTGGTTTTTTCAGCTTCCAG+GGG | + | chr5_1:7815178-7815197 | None:intergenic | 45.0% |
| !!! | GCTGGTTTTTTCAGCTTCCA+GGG | + | chr5_1:7815179-7815198 | None:intergenic | 45.0% |
| !!! | TGCTGGTTTTTTCAGCTTCC+AGG | + | chr5_1:7815180-7815199 | None:intergenic | 45.0% |
| TGGAGAGTTGTCATTGATGC+TGG | + | chr5_1:7815197-7815216 | None:intergenic | 45.0% | |
| GACAACTCTCCATCAAACTC+CGG | - | chr5_1:7815205-7815224 | Msa0714990:intron | 45.0% | |
| TCCTCCAACTCAAAAAACCC+TGG | - | chr5_1:7815259-7815278 | Msa0714990:intron | 45.0% | |
| !!! | TCCAGGGTTTTTTGAGTTGG+AGG | + | chr5_1:7815263-7815282 | None:intergenic | 45.0% |
| CTCAAAAAACCCTGGATCAG+TGG | - | chr5_1:7815267-7815286 | Msa0714990:intron | 45.0% | |
| !! | GTTGTTGTTTCCACTGATCC+AGG | + | chr5_1:7815280-7815299 | None:intergenic | 45.0% |
| ACGTGCCAATTCACAACTCA+AGG | + | chr5_1:7815362-7815381 | None:intergenic | 45.0% | |
| GAAGACCAATTGAGCTATGG+TGG | - | chr5_1:7815604-7815623 | Msa0714990:five_prime_UTR | 45.0% | |
| ! | TTGTTACCCACTTTAGCTCG+AGG | + | chr5_1:7815631-7815650 | None:intergenic | 45.0% |
| ! | CGTGTGGAACCGGTTTCATT+TGG | - | chr5_1:7813006-7813025 | Msa0714990:three_prime_UTR | 50.0% |
| GTCTCGCCCAAAGACATTGA+AGG | - | chr5_1:7813124-7813143 | Msa0714990:three_prime_UTR | 50.0% | |
| GAGAAAAATGTCGCAGCGGT+CGG | - | chr5_1:7813490-7813509 | Msa0714990:CDS | 50.0% | |
| GTCTTCAACAAAAACGGCGC+CGG | + | chr5_1:7813518-7813537 | None:intergenic | 50.0% | |
| !! | TATCGGTGAGGAGGTGTTTG+TGG | + | chr5_1:7815117-7815136 | None:intergenic | 50.0% |
| TTGTGACGACGGTTGTGAGA+TGG | + | chr5_1:7815155-7815174 | None:intergenic | 50.0% | |
| ! | TGAGTTGGAGGAAGAGGTTG+AGG | + | chr5_1:7815251-7815270 | None:intergenic | 50.0% |
| GGCGTTTGATATCGGTGAGG+AGG | + | chr5_1:7815126-7815145 | None:intergenic | 55.0% | |
| TGCGGCGTTTGATATCGGTG+AGG | + | chr5_1:7815129-7815148 | None:intergenic | 55.0% | |
| CCATCAAACTCCGGCAACGA+CGG | - | chr5_1:7815214-7815233 | Msa0714990:intron | 55.0% | |
| GTTGGAGGAAGAGGTTGAGG+TGG | + | chr5_1:7815248-7815267 | None:intergenic | 55.0% | |
| GAGGCCCACCATAGCTCAAT+TGG | + | chr5_1:7815612-7815631 | None:intergenic | 55.0% | |
| ACAACCGTCGTCACAACCCC+TGG | - | chr5_1:7815159-7815178 | Msa0714990:intron | 60.0% | |
| GCTTCCAGGGGTTGTGACGA+CGG | + | chr5_1:7815166-7815185 | None:intergenic | 60.0% | |
| CCGTCGTTGCCGGAGTTTGA+TGG | + | chr5_1:7815217-7815236 | None:intergenic | 60.0% | |
| ! | TGGTGGGCCTCGAGCTAAAG+TGG | - | chr5_1:7815621-7815640 | Msa0714990:five_prime_UTR | 60.0% |
| GGTGGGCCTCGAGCTAAAGT+GGG | - | chr5_1:7815622-7815641 | Msa0714990:five_prime_UTR | 60.0% | |
| AACTCCGGCAACGACGGAGC+AGG | - | chr5_1:7815220-7815239 | Msa0714990:intron | 65.0% | |
| GGATCCTGCTCCGTCGTTGC+CGG | + | chr5_1:7815227-7815246 | None:intergenic | 65.0% | |
| AATGTCGCAGCGGTCGGCGC+CGG | - | chr5_1:7813496-7813515 | Msa0714990:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 7812925 | 7816057 | 7812925 | ID=Msa0714990;Name=Msa0714990 |
| chr5_1 | mRNA | 7812925 | 7816057 | 7812925 | ID=Msa0714990-mRNA-1;Parent=Msa0714990;Name=Msa0714990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=572|1|1|1|1|1|2|343|287 |
| chr5_1 | exon | 7812925 | 7813927 | 7812925 | ID=Msa0714990-mRNA-1:exon:3271;Parent=Msa0714990-mRNA-1 |
| chr5_1 | exon | 7815282 | 7816057 | 7815282 | ID=Msa0714990-mRNA-1:exon:3270;Parent=Msa0714990-mRNA-1 |
| chr5_1 | five_prime_UTR | 7815486 | 7816057 | 7815486 | ID=Msa0714990-mRNA-1:five_prime_utr;Parent=Msa0714990-mRNA-1 |
| chr5_1 | CDS | 7815282 | 7815485 | 7815282 | ID=Msa0714990-mRNA-1:cds;Parent=Msa0714990-mRNA-1 |
| chr5_1 | CDS | 7813268 | 7813927 | 7813268 | ID=Msa0714990-mRNA-1:cds;Parent=Msa0714990-mRNA-1 |
| chr5_1 | three_prime_UTR | 7812925 | 7813267 | 7812925 | ID=Msa0714990-mRNA-1:three_prime_utr;Parent=Msa0714990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
