AlfalfaGEDB | Msa1262440

M. sativa cultivar zhongmu-4 / Msa1262440

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262440	XP_003630728.1	85.544	754	63	5	14	724	14	764	0.0	1199

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262440	sp\|Q9SY69\|PPR29_ARATH	65.125	519	174	2	25	539	86	601	0.0	690

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262440	G7L7H1	85.544	754	63	5	14	724	14	764	0.0	1199

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0156650	Msa1262440	0.803078	4.139376e-49	-8.615850e-47
Msa0162770	Msa1262440	0.805989	1.022444e-49	-8.615850e-47
Msa0517700	Msa1262440	0.802268	6.081733e-49	-8.615850e-47
Msa0607340	Msa1262440	0.812267	4.621092e-51	-8.615850e-47
Msa1030570	Msa1262440	0.813102	3.034101e-51	-8.615850e-47
Msa1069660	Msa1262440	0.803253	3.808127e-49	-8.615850e-47
Msa1214800	Msa1262440	0.965345	1.746851e-124	-8.615850e-47
Msa1262440	Msa1300750	0.969245	7.689625e-130	-8.615850e-47
Msa1262440	Msa1410430	0.801501	8.741197e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262440	MtrunA17_Chr8g0390001	76.482	523	77	5	245	724	107	626	0.0	758
Msa1262440	MtrunA17_Chr8g0390001	45.109	368	178	9	14	365	14	373	1.42e-60	218
Msa1262440	MtrunA17_Chr8g0390001	32.314	229	95	9	559	731	517	741	2.08e-11	67.4
Msa1262440	MtrunA17_Chr7g0242881	51.991	427	163	6	21	445	14	400	3.51e-139	415
Msa1262440	MtrunA17_Chr7g0242861	50.000	460	168	8	1	458	1	400	4.13e-136	407
Msa1262440	MtrunA17_Chr3g0126821	36.704	534	318	8	19	538	25	552	2.30e-95	309
Msa1262440	MtrunA17_Chr1g0211431	33.945	545	340	8	8	538	12	550	1.26e-90	296
Msa1262440	MtrunA17_Chr7g0242841	55.172	261	96	5	106	363	2	244	1.07e-86	273
Msa1262440	MtrunA17_Chr1g0171281	26.777	422	299	3	116	537	125	536	1.01e-38	151
Msa1262440	MtrunA17_Chr1g0171281	19.825	343	229	4	170	510	36	334	4.72e-13	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262440	AT1G10270.1	65.125	519	174	2	25	539	86	601	0.0	690
Msa1262440	AT3G49240.1	36.347	542	328	11	7	538	15	549	2.73e-92	301
Msa1262440	AT3G60960.1	36.386	415	212	11	50	445	18	399	6.60e-67	226
Msa1262440	AT3G60960.3	36.386	415	212	11	50	445	18	399	6.60e-67	226
Msa1262440	AT3G60960.2	36.386	415	212	11	50	445	18	399	6.60e-67	226
Msa1262440	AT3G60980.1	38.196	377	201	11	89	441	38	406	3.53e-66	225
Msa1262440	AT5G28380.1	36.000	325	161	9	134	441	88	382	1.29e-52	187
Msa1262440	AT5G28340.1	36.000	325	161	9	134	441	133	427	2.31e-52	188
Msa1262440	AT5G28380.2	34.426	305	153	9	154	441	1	275	4.05e-43	157
Msa1262440	AT1G12620.1	26.357	387	274	4	115	501	174	549	6.94e-41	159

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Find 220 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTTAGAATTTATCT+TGG	0.409265	8_2:+65120006	None:intergenic
AAATCATGGTGCTGATTCAA+TGG	0.410356	8_2:-65120437	Msa1262440:CDS
AACAAAACATTACAAGTGGC+AGG	0.541519	8_2:+65120211	None:intergenic
AACCATGATATTAAAAGTAT+CGG	0.480661	8_2:+65120090	None:intergenic
AACCTTCCTAAAAGTATCAA+GGG	0.509127	8_2:+65120033	None:intergenic
AAGAAACGATATTCGGAACA+AGG	0.602063	8_2:+65120647	None:intergenic
AAGGAGCATGCGAGATGATG+TGG	0.572690	8_2:+65120560	None:intergenic
AATCATCGCTGCTATGTATC+GGG	0.526652	8_2:-65120725	Msa1262440:CDS
AATCGCTGTATTGTTTATGA+TGG	0.530866	8_2:-65120337	Msa1262440:CDS
AATTGAGAAGGGGACCTTGC+CGG	0.415817	8_2:+65119428	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCGCTGTATTGTTTATGA+TGG	-	chr8_2:65119676-65119695	Msa1262440:CDS	30.0%
CAACATCTGATCAAACAATT+CGG	+	chr8_2:65119866-65119885	None:intergenic	30.0%
TTAACAGCTTGAAAATTTGG+AGG	+	chr8_2:65119901-65119920	None:intergenic	30.0%
AGAGATAATATTACGATACC+CGG	+	chr8_2:65120046-65120065	None:intergenic	30.0%
GGTATCGTAATATTATCTCT+AGG	-	chr8_2:65120046-65120065	Msa1262440:CDS	30.0%
GATAGATGGTTATTTGAAAG+TGG	-	chr8_2:65120164-65120183	Msa1262440:CDS	30.0%
ATTTGAGAAGGAAACTCATA+AGG	+	chr8_2:65120864-65120883	None:intergenic	30.0%
TTATGAGTTTCCTTCTCAAA+TGG	-	chr8_2:65120863-65120882	Msa1262440:CDS	30.0%
AATCGCTGTATTGTTTATGA+TGG	-	chr8_2:65119676-65119695	Msa1262440:CDS	30.0%
CAACATCTGATCAAACAATT+CGG	+	chr8_2:65119866-65119885	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	65118920	65121115	65118920	ID=Msa1262440;Name=Msa1262440
chr8_2	mRNA	65118920	65121115	65118920	ID=Msa1262440-mRNA-1;Parent=Msa1262440;Name=Msa1262440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|731
chr8_2	exon	65118920	65121115	65118920	ID=Msa1262440-mRNA-1:exon:21091;Parent=Msa1262440-mRNA-1
chr8_2	CDS	65118920	65121115	65118920	ID=Msa1262440-mRNA-1:cds;Parent=Msa1262440-mRNA-1

Gene Sequence

>Msa1262440

ATGTCACTCTGCCGCCTTCTCCTCCGCTCTCTCCGCCGTCCCACAACCGTCTCTCCCATCTCCATCACCACCCGCTCCTTCGCATTCTCCTCCGCCGAAGAAGCAGCGGCAGAGCGACGCCGTCGTAAACGCCGTCTTCGCATCGAGCCTCCCTTGAACGCAATCCGTCCTCCTCCTCCTCAACACCAGCCTCGCGACCCTAACGCTCCTCGCCTCCCTGACTCCACATCGTCGCTGGTCGGACCTCGATTGAGTCTTCACAACCGTGTCCAATACCTAATTCGCGCCGGTGACCTAGACGCCGCCTCGGCCGCCGCTCGTCACTCGGTGTTCTCATCGACTCGCCCGACGGTTTTCACTTGCAACGCAATCATCGCTGCTATGTATCGGGCTAAGAGGTATAACGAAGCTATTGCACTTTTTCATTTCTTCTTCAACCAATCTAACCTTGTTCCGAATATCGTTTCTTACAACAATGTTATCAATACTCACTGCGATGAAGGCCGTGTCGATGTGGCTCTCGAGGTTTATCGCCACATCATCTCGCATGCTCCTTTTGGTCCTTCATCAGTAACTTATCGTCATCTCACCAAAGGTTTGATCAGTGTTGGTCGCATTGATGAAGCTGTTGATTTGTTGCGTGAGATGTTGGCTAAAAATCATGGTGCTGATTCAATGGTTTATAATAATATGATATCGGGTTTTCTTGAACTTGGTAATTTAGATAAGGCTAATGAGCTTTTTGATGAGCTTAAGAATCGCTGTATTGTTTATGATGGTGTTGTGAATGCTACTTATATGGAATGGTTTTTTAAGCAGGGAAGAGATAAGGAAGCCATGGATTCGTATATGTCTTTGATGGATCGTGGGTTTAGGATGACTCCTGCCACTTGTAATGTTTTGTTGGAGGTTTTGCTTAAGCATGATAAGCAAAAGGAGGCTTCCGAATTGTTTGATCAGATGTTGGATAATCACACTCCTCCAAATTTTCAAGCTGTTAATTCCGATACTTTTAATATCATGGTTAATGAGTGCTTTAAGCATGGTAAGTTTGATGAAGCCCTTGATACTTTTAGGAAGGTTGGTACCAAGATAAATTCTAAGCCTTTTATAATGGATGTTGCCGGGTATCGTAATATTATCTCTAGGTTTTGTGAGATTGGGATGATGTCGGAAGCTGACACATTGTTTGAAGAGTACTGCTCCAAGCATTTGAGTGCGGATGTGCCTACTCACACTGCTATGATAGATGGTTATTTGAAAGTGGGTAACATTGATGATGCTTTGAGGATATTTAACAAGATGGTGGATTGTGGTTTGAGGGTGACTGCTACCTTTGGCAATAGGGTTTTTGATGAATTGATTAAGAATGGCAAAGTTAATGAGTGTGCTCGTATTTTGAGCAAAATGGGAGGACAAGATCCCAAGCCTGATTCCACTTGCTATGAGGTTGTGATCAAGGGACTGTGTGCTGAAGGTTTGTTGGATAAGAGTCAAGAGTTGTTGGACGAGGTTATGAGGTATGGTGTAGGGGTCACTCTTGCCTTGCGTGAATATGTGACTGAGGTTTTCAAAAATGCTGGGAAAGGTGAGGAGATTGAGAGGCTGCTAGATACGAACCGAATTGGATACAATTCCCGTCCAAGACCTGCATACCGTCCACCACCGGCAAGGTCCCCTTCTCAATTGGATAGAACACATAACCCAACTTATGGGCATCCGCAACAGCGCCCACCACTGCCTTCTGCTCAGATGGCTGGAGTGCACAACCCACCTTCTGAGTTTCCATCTCGTATTGTAGCACCTCAGCAATACCGATACCAAACACGGCCTTCTCAAGTTGTAGGAACGCATAACCAACCTTCTGGGTTTCCAGCTCAAGTAGCAGCACAAAATTCCCCACCACACTTTGATACTCGAATGGGTGGAATACACAACCCGCCTTATGAGTTTCCTTCTCAAATGGCAGCACATCAACGATACCAAACACCGCCTTCTCGGGTGCCAGGAGCACATAACGAACCTTCTAGATTTCCGGTTCAAATGGCAGCACAAAATTTCCCACCGCACTTTGATACTCGAATGGCTGGAGCAGATAACAACCGCTTTCCCCCTAGATATCCACCTCCAATCTCAGGGCAACAACACCCACTGTCTCCTCAAATGACAGCAAATGGACCTTCTCACTCAACATGA

Protein sequence

>Msa1262440

MSLCRLLLRSLRRPTTVSPISITTRSFAFSSAEEAAAERRRRKRRLRIEPPLNAIRPPPPQHQPRDPNAPRLPDSTSSLVGPRLSLHNRVQYLIRAGDLDAASAAARHSVFSSTRPTVFTCNAIIAAMYRAKRYNEAIALFHFFFNQSNLVPNIVSYNNVINTHCDEGRVDVALEVYRHIISHAPFGPSSVTYRHLTKGLISVGRIDEAVDLLREMLAKNHGADSMVYNNMISGFLELGNLDKANELFDELKNRCIVYDGVVNATYMEWFFKQGRDKEAMDSYMSLMDRGFRMTPATCNVLLEVLLKHDKQKEASELFDQMLDNHTPPNFQAVNSDTFNIMVNECFKHGKFDEALDTFRKVGTKINSKPFIMDVAGYRNIISRFCEIGMMSEADTLFEEYCSKHLSADVPTHTAMIDGYLKVGNIDDALRIFNKMVDCGLRVTATFGNRVFDELIKNGKVNECARILSKMGGQDPKPDSTCYEVVIKGLCAEGLLDKSQELLDEVMRYGVGVTLALREYVTEVFKNAGKGEEIERLLDTNRIGYNSRPRPAYRPPPARSPSQLDRTHNPTYGHPQQRPPLPSAQMAGVHNPPSEFPSRIVAPQQYRYQTRPSQVVGTHNQPSGFPAQVAAQNSPPHFDTRMGGIHNPPYEFPSQMAAHQRYQTPPSRVPGAHNEPSRFPVQMAAQNFPPHFDTRMAGADNNRFPPRYPPPISGQQHPLSPQMTANGPSHST*