Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271780 | KAH1069346.1 | 87.342 | 237 | 29 | 1 | 1 | 237 | 1 | 236 | 3.33e-152 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271780 | sp|O04905|KCY3_ARATH | 81.643 | 207 | 31 | 2 | 1 | 207 | 1 | 200 | 1.67e-121 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271780 | I1JMI6 | 87.342 | 237 | 29 | 1 | 1 | 237 | 1 | 236 | 1.59e-152 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0167400 | Msa1271780 | 0.803706 | 3.067083e-49 | -8.615850e-47 |
| Msa1229620 | Msa1271780 | 0.952414 | 2.550955e-110 | -8.615850e-47 |
| Msa1271780 | Msa1310230 | 0.949737 | 6.931428e-108 | -8.615850e-47 |
| Msa1271780 | Msa1393430 | 0.847223 | 1.324879e-59 | -8.615850e-47 |
| Msa1271780 | Msa1435440 | 0.907640 | 4.071780e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271780 | MtrunA17_Chr8g0337051 | 96.154 | 208 | 8 | 0 | 1 | 208 | 1 | 208 | 4.10e-148 | 411 |
| Msa1271780 | MtrunA17_Chr5g0428971 | 62.222 | 180 | 68 | 0 | 22 | 201 | 32 | 211 | 3.97e-80 | 239 |
| Msa1271780 | MtrunA17_Chr4g0018221 | 62.222 | 180 | 68 | 0 | 22 | 201 | 55 | 234 | 6.70e-80 | 239 |
| Msa1271780 | MtrunA17_Chr2g0305051 | 27.751 | 209 | 121 | 4 | 20 | 201 | 71 | 276 | 6.90e-24 | 99.8 |
| Msa1271780 | MtrunA17_Chr4g0017231 | 34.375 | 128 | 81 | 2 | 19 | 144 | 85 | 211 | 1.26e-23 | 96.7 |
| Msa1271780 | MtrunA17_Chr4g0057771 | 26.066 | 211 | 123 | 4 | 24 | 201 | 32 | 242 | 1.09e-19 | 84.7 |
| Msa1271780 | MtrunA17_Chr1g0181801 | 25.888 | 197 | 101 | 4 | 27 | 180 | 117 | 311 | 3.45e-16 | 76.6 |
| Msa1271780 | MtrunA17_Chr7g0263541 | 24.424 | 217 | 122 | 4 | 18 | 193 | 34 | 249 | 2.16e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1271780 | AT5G26667.3 | 81.643 | 207 | 31 | 2 | 1 | 207 | 1 | 200 | 1.70e-122 | 346 |
| Msa1271780 | AT5G26667.2 | 81.643 | 207 | 31 | 2 | 1 | 207 | 1 | 200 | 1.70e-122 | 346 |
| Msa1271780 | AT5G26667.4 | 81.643 | 207 | 31 | 2 | 1 | 207 | 1 | 200 | 1.70e-122 | 346 |
| Msa1271780 | AT5G26667.1 | 81.643 | 207 | 31 | 2 | 1 | 207 | 1 | 200 | 2.22e-122 | 346 |
| Msa1271780 | AT3G60180.1 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 2.45e-107 | 308 |
| Msa1271780 | AT3G60180.2 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 2.45e-107 | 308 |
| Msa1271780 | AT4G25280.1 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 5.12e-78 | 236 |
| Msa1271780 | AT4G25280.2 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 5.12e-78 | 236 |
| Msa1271780 | AT3G60961.1 | 68.421 | 133 | 38 | 1 | 73 | 201 | 1 | 133 | 2.41e-65 | 199 |
| Msa1271780 | AT5G35170.2 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 6.15e-27 | 108 |
| Msa1271780 | AT5G35170.1 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 6.60e-27 | 108 |
| Msa1271780 | AT5G47840.1 | 30.144 | 209 | 116 | 4 | 20 | 201 | 63 | 268 | 2.28e-26 | 103 |
| Msa1271780 | AT5G47840.2 | 37.008 | 127 | 77 | 2 | 20 | 144 | 63 | 188 | 9.88e-26 | 101 |
| Msa1271780 | AT5G63400.1 | 27.488 | 211 | 120 | 4 | 24 | 201 | 36 | 246 | 3.04e-20 | 86.7 |
| Msa1271780 | AT5G50370.1 | 27.723 | 202 | 112 | 5 | 23 | 191 | 37 | 237 | 5.60e-18 | 80.5 |
| Msa1271780 | AT2G37250.1 | 25.238 | 210 | 112 | 3 | 27 | 193 | 57 | 264 | 1.81e-16 | 77.0 |
| Msa1271780 | AT2G39270.1 | 27.411 | 197 | 98 | 4 | 27 | 180 | 70 | 264 | 3.72e-15 | 73.6 |
| Msa1271780 | AT5G63400.2 | 31.200 | 125 | 82 | 2 | 24 | 144 | 36 | 160 | 7.36e-14 | 68.2 |
| Msa1271780 | AT5G50370.2 | 27.072 | 181 | 98 | 5 | 23 | 170 | 37 | 216 | 7.95e-14 | 68.9 |
Find 64 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTATCAAAGAGAAAATT+TGG | 0.145439 | 8_3:-5223451 | Msa1271780:CDS |
| ATCAAATCTGGCTCCGAAAA+TGG | 0.173136 | 8_3:-5224528 | Msa1271780:CDS |
| TTTAGTCGGTAGGGGTTAAA+TGG | 0.194002 | 8_3:+5227530 | None:intergenic |
| TTCCTTCTTTAATCATATTC+TGG | 0.194476 | 8_3:+5224197 | None:intergenic |
| GCAAATGTTGTCGAACATTT+TGG | 0.209865 | 8_3:-5224591 | Msa1271780:CDS |
| CGTCTCTCCATTTCTTCCTC+TGG | 0.293885 | 8_3:+5223904 | None:intergenic |
| AATGACAAATTTCTTATTGA+TGG | 0.306611 | 8_3:-5224115 | Msa1271780:CDS |
| TTCGACAACATTTGCACATT+GGG | 0.333869 | 8_3:+5224599 | None:intergenic |
| ATCGTTGAAGGTATTTATAT+TGG | 0.359065 | 8_3:+5227487 | None:intergenic |
| ACGACAACATTGAAACAATA+AGG | 0.372468 | 8_3:-5223757 | Msa1271780:CDS |
| CCTACAGTTGTGTTTGTGTT+AGG | 0.377583 | 8_3:-5225260 | Msa1271780:intron |
| CCTCTGGGCAATCAAAATAT+AGG | 0.386242 | 8_3:+5223920 | None:intergenic |
| GAGAAATTGTTGTTATGGTT+AGG | 0.392336 | 8_3:+5227464 | None:intergenic |
| GTCTCTCCATTTCTTCCTCT+GGG | 0.403856 | 8_3:+5223905 | None:intergenic |
| CTGCGAGCGGAAATCAAATC+TGG | 0.406089 | 8_3:-5224540 | Msa1271780:CDS |
| AATCTGAGAAATTGTTGTTA+TGG | 0.408867 | 8_3:+5227459 | None:intergenic |
| TGATTGCCCAGAGGAAGAAA+TGG | 0.417731 | 8_3:-5223911 | Msa1271780:CDS |
| GACTCAAATACCTCCTCAAC+AGG | 0.418858 | 8_3:+5223559 | None:intergenic |
| TTAGTCGGTAGGGGTTAAAT+GGG | 0.427969 | 8_3:+5227531 | None:intergenic |
| TGATAATGGTACAGGTGGTC+CGG | 0.428269 | 8_3:-5224637 | Msa1271780:intron |
| TTCCTTCCGAGGTAACAATT+AGG | 0.429145 | 8_3:-5224168 | Msa1271780:CDS |
| TCTCTCCTCTTTCGCGCAAA+AGG | 0.438303 | 8_3:-5227426 | Msa1271780:intron |
| ATTAATTATTATGATGCAAA+GGG | 0.443787 | 8_3:-5223695 | Msa1271780:CDS |
| AACAATAAGGAAGCGATTCA+AGG | 0.444129 | 8_3:-5223744 | Msa1271780:CDS |
| TCAAATCTGGCTCCGAAAAT+GGG | 0.446253 | 8_3:-5224527 | Msa1271780:intron |
| GGGTTTACTCACCTCAGTGC+TGG | 0.448432 | 8_3:-5224570 | Msa1271780:CDS |
| GGTACAGGTGGTCCGGGCAG+TGG | 0.454545 | 8_3:-5224630 | Msa1271780:intron |
| ATTTATTTGTAGGATACAAA+TGG | 0.459331 | 8_3:-5225302 | Msa1271780:intron |
| ATATTGGTGTTAAGAAAGTT+CGG | 0.460947 | 8_3:+5227503 | None:intergenic |
| TAAAATTTCGTATGGAGTAA+TGG | 0.466516 | 8_3:+5227558 | None:intergenic |
| TGGAGAGACGACTTCTTAGT+AGG | 0.467613 | 8_3:-5223891 | Msa1271780:CDS |
| GGTGGTCCGGGCAGTGGAAA+AGG | 0.473432 | 8_3:-5224624 | Msa1271780:CDS |
| TCAAAATATAGGACAAATGT+TGG | 0.497184 | 8_3:+5223931 | None:intergenic |
| ATCCAGAATATGATTAAAGA+AGG | 0.504467 | 8_3:-5224199 | Msa1271780:CDS |
| TGGGAAAATAAAATTTCGTA+TGG | 0.508074 | 8_3:+5227550 | None:intergenic |
| GTTATGGTTAGGATCGTTGA+AGG | 0.512352 | 8_3:+5227475 | None:intergenic |
| GCATCATAATAATTAATCAC+AGG | 0.514630 | 8_3:+5223701 | None:intergenic |
| AGTGTAGTTGATATTACTCA+TGG | 0.518202 | 8_3:-5225986 | Msa1271780:exon |
| GATAATGGTACAGGTGGTCC+GGG | 0.533653 | 8_3:-5224636 | Msa1271780:intron |
| AGCCTAATTGTTACCTCGGA+AGG | 0.535061 | 8_3:+5224166 | None:intergenic |
| GTAATGGAAGGAAAGGGAGG+TGG | 0.538102 | 8_3:+5227574 | None:intergenic |
| GTTCGACAACATTTGCACAT+TGG | 0.539900 | 8_3:+5224598 | None:intergenic |
| GTATGGAGTAATGGAAGGAA+AGG | 0.543753 | 8_3:+5227567 | None:intergenic |
| GATTAATTATTATGATGCAA+AGG | 0.546499 | 8_3:-5223696 | Msa1271780:CDS |
| ATTTGATTTCCGCTCGCAGA+AGG | 0.550406 | 8_3:+5224544 | None:intergenic |
| CAGAAGCCTAATTGTTACCT+CGG | 0.555573 | 8_3:+5224162 | None:intergenic |
| GGAGTAATGGAAGGAAAGGG+AGG | 0.556953 | 8_3:+5227571 | None:intergenic |
| TGTTATTGAAGCTGCAAACA+AGG | 0.570574 | 8_3:-5225959 | Msa1271780:intron |
| CCGTGCAGCATTTGAGAGAG+TGG | 0.571248 | 8_3:-5224071 | Msa1271780:intron |
| TGCTGGTGACCTTCTGCGAG+CGG | 0.575371 | 8_3:-5224553 | Msa1271780:CDS |
| CATCATAATAATTAATCACA+GGG | 0.576231 | 8_3:+5223702 | None:intergenic |
| CCTAACACAAACACAACTGT+AGG | 0.576692 | 8_3:+5225260 | None:intergenic |
| ATTTCGTATGGAGTAATGGA+AGG | 0.578668 | 8_3:+5227562 | None:intergenic |
| TATGGAGTAATGGAAGGAAA+GGG | 0.582559 | 8_3:+5227568 | None:intergenic |
| TGTTGAGGAGGTATTTGAGT+CGG | 0.603618 | 8_3:-5223557 | Msa1271780:CDS |
| AGGTGGTTGCGTGATAGTAA+CGG | 0.605517 | 8_3:+5227591 | None:intergenic |
| TGCTGCAAGGCCTGTTGAGG+AGG | 0.615003 | 8_3:-5223569 | Msa1271780:CDS |
| CCACTCTCTCAAATGCTGCA+CGG | 0.625742 | 8_3:+5224071 | None:intergenic |
| TGATGCTGCAAGGCCTGTTG+AGG | 0.626580 | 8_3:-5223572 | Msa1271780:CDS |
| TGCAAAGGGAAAAGTTCGCA+AGG | 0.641623 | 8_3:-5223681 | Msa1271780:intron |
| ACGACTTCTTAGTAGGAACC+AGG | 0.649336 | 8_3:-5223884 | Msa1271780:intron |
| GTGTAGTTGATATTACTCAT+GGG | 0.660018 | 8_3:-5225985 | Msa1271780:exon |
| CAACAAGCAATGCAAGACAG+TGG | 0.683184 | 8_3:-5224139 | Msa1271780:CDS |
| GCAGAAGGTCACCAGCACTG+AGG | 0.757069 | 8_3:+5224559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCATTTACATAAAATTA+GGG | + | chr8_3:5224780-5224799 | None:intergenic | 10.0% |
| !! | TAATTCATTTACATAAAATT+AGG | + | chr8_3:5224781-5224800 | None:intergenic | 10.0% |
| !! | TTTACATAAATAATTTATCT+TGG | - | chr8_3:5224927-5224946 | Msa1271780:intron | 10.0% |
| !!! | ATATAATTCTTTTTTTTTTG+CGG | + | chr8_3:5225304-5225323 | None:intergenic | 10.0% |
| !!! | TGAATTTTTAACATTGATTA+GGG | - | chr8_3:5224128-5224147 | Msa1271780:CDS | 15.0% |
| !! | ATATGTAGATTTAATATGAT+AGG | - | chr8_3:5224602-5224621 | Msa1271780:CDS | 15.0% |
| !! | ATTCATTTACATAAAATTAG+GGG | + | chr8_3:5224779-5224798 | None:intergenic | 15.0% |
| !! | TTATGTAAATGAATTATGAT+TGG | - | chr8_3:5224785-5224804 | Msa1271780:intron | 15.0% |
| !! | AATTATTTATGTAAAGAATC+AGG | + | chr8_3:5224922-5224941 | None:intergenic | 15.0% |
| !! | TCTATAGAATTATAGAATTT+GGG | - | chr8_3:5225161-5225180 | Msa1271780:intron | 15.0% |
| !! | AAGAATTAAATAATATGGTT+TGG | - | chr8_3:5225393-5225412 | Msa1271780:intron | 15.0% |
| !! | TGAATTCTATAATTAAACAA+AGG | + | chr8_3:5225537-5225556 | None:intergenic | 15.0% |
| !! | TATTGATCTAATAATGATAA+TGG | - | chr8_3:5226331-5226350 | Msa1271780:intron | 15.0% |
| !! | ATTAATTATTATGATGCAAA+GGG | - | chr8_3:5227287-5227306 | Msa1271780:intron | 15.0% |
| !!! | TGAAATTTTCAACATTGATT+AGG | - | chr8_3:5223790-5223809 | Msa1271780:intron | 20.0% |
| !!! | GTTATTTTTTCACATTGATT+AGG | - | chr8_3:5223904-5223923 | Msa1271780:CDS | 20.0% |
| !!! | CTGAATTTTTAACATTGATT+AGG | - | chr8_3:5224127-5224146 | Msa1271780:CDS | 20.0% |
| !!! | TGAATTTTTTGACACTTTTT+AGG | - | chr8_3:5224232-5224251 | Msa1271780:intron | 20.0% |
| !!! | GAATTTTTTGACACTTTTTA+GGG | - | chr8_3:5224233-5224252 | Msa1271780:intron | 20.0% |
| !! | TATCTGCAAATAAAGAAATA+CGG | + | chr8_3:5224971-5224990 | None:intergenic | 20.0% |
| !!! | AATCAGATTTTCAAAAGAAA+CGG | + | chr8_3:5225109-5225128 | None:intergenic | 20.0% |
| !! | CTCTATAGAATTATAGAATT+TGG | - | chr8_3:5225160-5225179 | Msa1271780:intron | 20.0% |
| !! | TTAATCACTTATTTGATTGT+AGG | - | chr8_3:5225600-5225619 | Msa1271780:intron | 20.0% |
| !! | TCAATTCTTCATTTATTTGT+AGG | - | chr8_3:5225670-5225689 | Msa1271780:intron | 20.0% |
| !! | ATTTATTTGTAGGATACAAA+TGG | - | chr8_3:5225680-5225699 | Msa1271780:intron | 20.0% |
| !!! | ACTGCTTGTTATAAATAAAT+TGG | + | chr8_3:5225854-5225873 | None:intergenic | 20.0% |
| !!! | GCTTTTTTATGTTTATCTTA+AGG | + | chr8_3:5226109-5226128 | None:intergenic | 20.0% |
| !!! | ATATAATTTGTACCCATTTT+CGG | + | chr8_3:5226470-5226489 | None:intergenic | 20.0% |
| !! | ACTATTTCAAAAGAAGAAAA+GGG | + | chr8_3:5226541-5226560 | None:intergenic | 20.0% |
| !! | TACTATTTCAAAAGAAGAAA+AGG | + | chr8_3:5226542-5226561 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTGAAATAGTAAA+TGG | - | chr8_3:5226544-5226563 | Msa1271780:intron | 20.0% |
| !! | AATTTCTATGTATTTATGCT+AGG | - | chr8_3:5226629-5226648 | Msa1271780:intron | 20.0% |
| !! | AATGACAAATTTCTTATTGA+TGG | - | chr8_3:5226867-5226886 | Msa1271780:intron | 20.0% |
| !! | CATCATAATAATTAATCACA+GGG | + | chr8_3:5227283-5227302 | None:intergenic | 20.0% |
| !! | GATTAATTATTATGATGCAA+AGG | - | chr8_3:5227286-5227305 | Msa1271780:intron | 20.0% |
| !!! | ATTTTCTCTTTGATAGAAAA+TGG | + | chr8_3:5227530-5227549 | None:intergenic | 20.0% |
| !! | TTTCTATCAAAGAGAAAATT+TGG | - | chr8_3:5227531-5227550 | Msa1271780:five_prime_UTR | 20.0% |
| !! | TTTATTTAAAAACTCATGCA+AGG | + | chr8_3:5227645-5227664 | None:intergenic | 20.0% |
| ! | TAAAATTTCGTATGGAGTAA+TGG | + | chr8_3:5223427-5223446 | None:intergenic | 25.0% |
| ! | TGGGAAAATAAAATTTCGTA+TGG | + | chr8_3:5223435-5223454 | None:intergenic | 25.0% |
| !!! | ATATTGGTGTTAAGAAAGTT+CGG | + | chr8_3:5223482-5223501 | None:intergenic | 25.0% |
| !!! | ATCGTTGAAGGTATTTATAT+TGG | + | chr8_3:5223498-5223517 | None:intergenic | 25.0% |
| !! | AATCTGAGAAATTGTTGTTA+TGG | + | chr8_3:5223526-5223545 | None:intergenic | 25.0% |
| !!! | AAATTCATGTGTTTGATTTG+AGG | - | chr8_3:5223853-5223872 | Msa1271780:intron | 25.0% |
| !!! | TTTTAACATTGATTAGCTTG+TGG | - | chr8_3:5224018-5224037 | Msa1271780:intron | 25.0% |
| ! | TATTGCCTAAGAATAAGAAA+TGG | - | chr8_3:5224206-5224225 | Msa1271780:CDS | 25.0% |
| ! | TGTAGATTTAATATGATAGG+CGG | - | chr8_3:5224605-5224624 | Msa1271780:CDS | 25.0% |
| ! | AAAAGAAGGGAAAATGTATT+TGG | + | chr8_3:5224647-5224666 | None:intergenic | 25.0% |
| !! | TACATTTTCCCTTCTTTTAT+TGG | - | chr8_3:5224649-5224668 | Msa1271780:intron | 25.0% |
| !! | TTTTGCTACCAATAAAAGAA+GGG | + | chr8_3:5224660-5224679 | None:intergenic | 25.0% |
| ! | AAAAGACAGGAATATGTATT+TGG | + | chr8_3:5224739-5224758 | None:intergenic | 25.0% |
| !! | CTTTTGATACTAAAAAAGAC+AGG | + | chr8_3:5224752-5224771 | None:intergenic | 25.0% |
| ! | ATCTGCAAATAAAGAAATAC+GGG | + | chr8_3:5224970-5224989 | None:intergenic | 25.0% |
| !!! | GTTTCTTTTGAAAATCTGAT+TGG | - | chr8_3:5225108-5225127 | Msa1271780:intron | 25.0% |
| !!! | ATTCAGTATTGATTTCAACT+TGG | - | chr8_3:5225573-5225592 | Msa1271780:intron | 25.0% |
| ! | ATTTGATTGTAGGATACTAA+CGG | - | chr8_3:5225610-5225629 | Msa1271780:intron | 25.0% |
| !!! | CAACTGTAGGTTTTTTATTT+AGG | + | chr8_3:5225712-5225731 | None:intergenic | 25.0% |
| ! | CATAAATAGTCAAATGCATT+AGG | + | chr8_3:5225804-5225823 | None:intergenic | 25.0% |
| ! | ACAAGATATTCAACTGATAT+AGG | - | chr8_3:5225944-5225963 | Msa1271780:intron | 25.0% |
| ! | ATTCAACTGATATAGGTATT+CGG | - | chr8_3:5225951-5225970 | Msa1271780:intron | 25.0% |
| ! | TAAATACATTCGCTTTCAAA+GGG | + | chr8_3:5226229-5226248 | None:intergenic | 25.0% |
| ! | ATAAATACATTCGCTTTCAA+AGG | + | chr8_3:5226230-5226249 | None:intergenic | 25.0% |
| ! | TTTATTGTTGAAGTTGTTTG+TGG | - | chr8_3:5226276-5226295 | Msa1271780:intron | 25.0% |
| !!! | TCTAATAATGATAATGGTAC+AGG | - | chr8_3:5226337-5226356 | Msa1271780:intron | 25.0% |
| ! | ATGTATTTATGCTAGGTTAT+TGG | - | chr8_3:5226636-5226655 | Msa1271780:intron | 25.0% |
| ! | TGTATTTATGCTAGGTTATT+GGG | - | chr8_3:5226637-5226656 | Msa1271780:intron | 25.0% |
| ! | ATCCAGAATATGATTAAAGA+AGG | - | chr8_3:5226783-5226802 | Msa1271780:intron | 25.0% |
| ! | TTCCTTCTTTAATCATATTC+TGG | + | chr8_3:5226788-5226807 | None:intergenic | 25.0% |
| ! | TCAAAATATAGGACAAATGT+TGG | + | chr8_3:5227054-5227073 | None:intergenic | 25.0% |
| ! | ATGTATTGCATAATAGTGTA+GGG | + | chr8_3:5227131-5227150 | None:intergenic | 25.0% |
| ! | TATGTATTGCATAATAGTGT+AGG | + | chr8_3:5227132-5227151 | None:intergenic | 25.0% |
| !!! | TATTAAGCACTGAAAACATA+AGG | + | chr8_3:5227176-5227195 | None:intergenic | 25.0% |
| ! | ATACTGGATATCAATGATAA+AGG | - | chr8_3:5227193-5227212 | Msa1271780:intron | 25.0% |
| ! | TACTGGATATCAATGATAAA+GGG | - | chr8_3:5227194-5227213 | Msa1271780:intron | 25.0% |
| ! | GCATCATAATAATTAATCAC+AGG | + | chr8_3:5227284-5227303 | None:intergenic | 25.0% |
| !!! | TGATTTACCTTCTCATTTTT+TGG | + | chr8_3:5227468-5227487 | None:intergenic | 25.0% |
| !!! | ATAGTAACGGCTTTATTTTC+GGG | + | chr8_3:5223381-5223400 | None:intergenic | 30.0% |
| !!! | GATAGTAACGGCTTTATTTT+CGG | + | chr8_3:5223382-5223401 | None:intergenic | 30.0% |
| !!! | GAAAGTTCGGTTTTTTTAGT+CGG | + | chr8_3:5223469-5223488 | None:intergenic | 30.0% |
| ! | GAGAAATTGTTGTTATGGTT+AGG | + | chr8_3:5223521-5223540 | None:intergenic | 30.0% |
| CATAACAGAGAAAAAAAGCA+TGG | + | chr8_3:5223670-5223689 | None:intergenic | 30.0% | |
| !! | TTTTCAACATTGATTAGGAG+TGG | - | chr8_3:5223795-5223814 | Msa1271780:intron | 30.0% |
| !! | TTTTCACATTGATTAGGTAG+TGG | - | chr8_3:5223910-5223929 | Msa1271780:CDS | 30.0% |
| AATTTCTCATTCTTCATACG+CGG | + | chr8_3:5223988-5224007 | None:intergenic | 30.0% | |
| !! | TTTTAACATTGATTAGGGAG+TGG | - | chr8_3:5224133-5224152 | Msa1271780:CDS | 30.0% |
| !!! | GTGATTTTTTGAAATCCACA+TGG | - | chr8_3:5224179-5224198 | Msa1271780:CDS | 30.0% |
| CAGTTCCATTTCTTATTCTT+AGG | + | chr8_3:5224214-5224233 | None:intergenic | 30.0% | |
| CTAATGTTGTGATATTGTTC+TGG | - | chr8_3:5224387-5224406 | Msa1271780:intron | 30.0% | |
| GTAATACCATTAACCAAATC+AGG | + | chr8_3:5224435-5224454 | None:intergenic | 30.0% | |
| ! | CTTTTGCTACCAATAAAAGA+AGG | + | chr8_3:5224661-5224680 | None:intergenic | 30.0% |
| ! | AGTGTAGTTGATATTACTCA+TGG | - | chr8_3:5224996-5225015 | Msa1271780:intron | 30.0% |
| ! | GTGTAGTTGATATTACTCAT+GGG | - | chr8_3:5224997-5225016 | Msa1271780:intron | 30.0% |
| ! | TTTTGTTGGACATTCTATCA+TGG | + | chr8_3:5225361-5225380 | None:intergenic | 30.0% |
| ATTGACACAATCTCACTAAT+AGG | + | chr8_3:5225480-5225499 | None:intergenic | 30.0% | |
| TTTACTAACAGCTCATTCAA+AGG | + | chr8_3:5225779-5225798 | None:intergenic | 30.0% | |
| AGTAAGATTAAAACAGCTTG+TGG | - | chr8_3:5226025-5226044 | Msa1271780:intron | 30.0% | |
| GTAAGATTAAAACAGCTTGT+GGG | - | chr8_3:5226026-5226045 | Msa1271780:intron | 30.0% | |
| !!! | TGTGTGTGTTTTGTTTTGAA+AGG | + | chr8_3:5226076-5226095 | None:intergenic | 30.0% |
| ATTTCAACTATGGATGCATT+TGG | + | chr8_3:5226136-5226155 | None:intergenic | 30.0% | |
| TAAGTTAAGTTTGCAATAGC+TGG | + | chr8_3:5226164-5226183 | None:intergenic | 30.0% | |
| GCTATTGCAAACTTAACTTA+AGG | - | chr8_3:5226164-5226183 | Msa1271780:intron | 30.0% | |
| !! | AATAATGATAATGGTACAGG+TGG | - | chr8_3:5226340-5226359 | Msa1271780:intron | 30.0% |
| ! | CAAATGTTGTCGAACATTTT+GGG | - | chr8_3:5226392-5226411 | Msa1271780:intron | 30.0% |
| CTATAAACAATCAGTGAAAC+AGG | + | chr8_3:5226517-5226536 | None:intergenic | 30.0% | |
| !! | TAGTAAATGGCTAGCTTTAT+AGG | - | chr8_3:5226557-5226576 | Msa1271780:intron | 30.0% |
| ! | TCATTGTGCTGTTAAAAATC+AGG | + | chr8_3:5226764-5226783 | None:intergenic | 30.0% |
| GATGCATTTAGGAAATTAGA+AGG | + | chr8_3:5227007-5227026 | None:intergenic | 30.0% | |
| CTAATTTCCTAAATGCATCA+TGG | - | chr8_3:5227008-5227027 | Msa1271780:intron | 30.0% | |
| ! | ATGTTTTCAGTGCTTAATAC+TGG | - | chr8_3:5227177-5227196 | Msa1271780:intron | 30.0% |
| ACGACAACATTGAAACAATA+AGG | - | chr8_3:5227225-5227244 | Msa1271780:intron | 30.0% | |
| ! | GACATTACATTACCTGTTTT+AGG | - | chr8_3:5227386-5227405 | Msa1271780:intron | 30.0% |
| TTTCAGTCCAAAAAATGAGA+AGG | - | chr8_3:5227458-5227477 | Msa1271780:five_prime_UTR | 30.0% | |
| ! | TATGGAGTAATGGAAGGAAA+GGG | + | chr8_3:5223417-5223436 | None:intergenic | 35.0% |
| ! | ATTTCGTATGGAGTAATGGA+AGG | + | chr8_3:5223423-5223442 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTTTTAGTCGGTA+GGG | + | chr8_3:5223464-5223483 | None:intergenic | 35.0% |
| AGATCTAACTGCAAACGAAA+CGG | + | chr8_3:5223628-5223647 | None:intergenic | 35.0% | |
| ! | CAGAGAAAAAAAGCATGGAT+CGG | + | chr8_3:5223665-5223684 | None:intergenic | 35.0% |
| !! | ATGTGTTTGATTTGAGGTTG+CGG | - | chr8_3:5223859-5223878 | Msa1271780:intron | 35.0% |
| CATCGAAGAATGAGAGATTT+AGG | - | chr8_3:5223882-5223901 | Msa1271780:intron | 35.0% | |
| !!! | TGAAGTTTTGACTCCTGATT+TGG | - | chr8_3:5224419-5224438 | Msa1271780:intron | 35.0% |
| !! | TTGACTCCTGATTTGGTTAA+TGG | - | chr8_3:5224426-5224445 | Msa1271780:intron | 35.0% |
| TGTCTGCTTGATCTGTTAAT+TGG | - | chr8_3:5224507-5224526 | Msa1271780:intron | 35.0% | |
| GATTTAATATGATAGGCGGA+TGG | - | chr8_3:5224609-5224628 | Msa1271780:CDS | 35.0% | |
| ! | TTTATTGGTAGCAAAAGTGC+AGG | - | chr8_3:5224664-5224683 | Msa1271780:intron | 35.0% |
| ! | TTTGTTCCCTCATTAAGTTG+CGG | - | chr8_3:5224824-5224843 | Msa1271780:intron | 35.0% |
| TCGCGTAAAATGCTACTATA+CGG | + | chr8_3:5224876-5224895 | None:intergenic | 35.0% | |
| TGTTATTGAAGCTGCAAACA+AGG | - | chr8_3:5225023-5225042 | Msa1271780:intron | 35.0% | |
| GAATTATAGAATTTGGGTCC+CGG | - | chr8_3:5225167-5225186 | Msa1271780:intron | 35.0% | |
| AGTTGAATATCTTGTCGAGA+GGG | + | chr8_3:5225939-5225958 | None:intergenic | 35.0% | |
| !! | CTAGTTCTATAAGCTCTCAT+GGG | - | chr8_3:5225991-5226010 | Msa1271780:five_prime_UTR | 35.0% |
| GCTGGTATACATTTCAACTA+TGG | + | chr8_3:5226146-5226165 | None:intergenic | 35.0% | |
| ACACAATAGAGACAGACAAA+TGG | + | chr8_3:5226257-5226276 | None:intergenic | 35.0% | |
| TTCGACAACATTTGCACATT+GGG | + | chr8_3:5226386-5226405 | None:intergenic | 35.0% | |
| ! | GCAAATGTTGTCGAACATTT+TGG | - | chr8_3:5226391-5226410 | Msa1271780:intron | 35.0% |
| AACAATAAGGAAGCGATTCA+AGG | - | chr8_3:5227238-5227257 | Msa1271780:intron | 35.0% | |
| ! | GTATGGAGTAATGGAAGGAA+AGG | + | chr8_3:5223418-5223437 | None:intergenic | 40.0% |
| TTAGTCGGTAGGGGTTAAAT+GGG | + | chr8_3:5223454-5223473 | None:intergenic | 40.0% | |
| TTTAGTCGGTAGGGGTTAAA+TGG | + | chr8_3:5223455-5223474 | None:intergenic | 40.0% | |
| !!! | TCGGTTTTTTTAGTCGGTAG+GGG | + | chr8_3:5223463-5223482 | None:intergenic | 40.0% |
| !!! | GTTCGGTTTTTTTAGTCGGT+AGG | + | chr8_3:5223465-5223484 | None:intergenic | 40.0% |
| GTTATGGTTAGGATCGTTGA+AGG | + | chr8_3:5223510-5223529 | None:intergenic | 40.0% | |
| TGTTGCTGTGTTCGATGAAT+TGG | - | chr8_3:5223758-5223777 | Msa1271780:CDS | 40.0% | |
| CTTAGGCAATATCAACCATG+TGG | + | chr8_3:5224197-5224216 | None:intergenic | 40.0% | |
| GTTAATGGTATTACCTTGCG+TGG | - | chr8_3:5224441-5224460 | Msa1271780:intron | 40.0% | |
| CTGCTTGATCTGTTAATTGG+TGG | - | chr8_3:5224510-5224529 | Msa1271780:intron | 40.0% | |
| CATTTCGTGCTAGCTGAATT+TGG | - | chr8_3:5224537-5224556 | Msa1271780:CDS | 40.0% | |
| ! | AGCTGCAAACAAGGTATTCA+TGG | - | chr8_3:5225032-5225051 | Msa1271780:intron | 40.0% |
| TGAGCATAGCTCATTTGGAA+GGG | - | chr8_3:5225190-5225209 | Msa1271780:intron | 40.0% | |
| AAGCATTATCCCACTAATCG+CGG | + | chr8_3:5225441-5225460 | None:intergenic | 40.0% | |
| GATAATGCTTGGTTGTGTTG+TGG | - | chr8_3:5225451-5225470 | Msa1271780:intron | 40.0% | |
| CCTAACACAAACACAACTGT+AGG | + | chr8_3:5225725-5225744 | None:intergenic | 40.0% | |
| CCTACAGTTGTGTTTGTGTT+AGG | - | chr8_3:5225722-5225741 | Msa1271780:intron | 40.0% | |
| CAGTTGAATATCTTGTCGAG+AGG | + | chr8_3:5225940-5225959 | None:intergenic | 40.0% | |
| !! | GCTAGTTCTATAAGCTCTCA+TGG | - | chr8_3:5225990-5226009 | Msa1271780:five_prime_UTR | 40.0% |
| GTTCGACAACATTTGCACAT+TGG | + | chr8_3:5226387-5226406 | None:intergenic | 40.0% | |
| ! | ATCAAATCTGGCTCCGAAAA+TGG | - | chr8_3:5226454-5226473 | Msa1271780:intron | 40.0% |
| ! | TCAAATCTGGCTCCGAAAAT+GGG | - | chr8_3:5226455-5226474 | Msa1271780:intron | 40.0% |
| CAATCAGTGAAACAGGACTA+CGG | + | chr8_3:5226510-5226529 | None:intergenic | 40.0% | |
| AGGAAAAATTGTTCCTTCCG+AGG | - | chr8_3:5226803-5226822 | Msa1271780:intron | 40.0% | |
| TTCCTTCCGAGGTAACAATT+AGG | - | chr8_3:5226814-5226833 | Msa1271780:intron | 40.0% | |
| CAGAAGCCTAATTGTTACCT+CGG | + | chr8_3:5226823-5226842 | None:intergenic | 40.0% | |
| GGTAGTACATTTATCTGCTC+AGG | + | chr8_3:5226986-5227005 | None:intergenic | 40.0% | |
| TGCAAAGCCATGATGCATTT+AGG | + | chr8_3:5227018-5227037 | None:intergenic | 40.0% | |
| CCTCTGGGCAATCAAAATAT+AGG | + | chr8_3:5227065-5227084 | None:intergenic | 40.0% | |
| !!! | CCTATATTTTGATTGCCCAG+AGG | - | chr8_3:5227062-5227081 | Msa1271780:intron | 40.0% |
| ATAGTGTAGGGTCTATTACC+TGG | + | chr8_3:5227119-5227138 | None:intergenic | 40.0% | |
| ! | GAAGCGATTCAAGGTTTTCT+TGG | - | chr8_3:5227247-5227266 | Msa1271780:intron | 40.0% |
| ! | GTTGTGTTTCTACCATGTCT+TGG | - | chr8_3:5227333-5227352 | Msa1271780:intron | 40.0% |
| ACAAGAAACTCACCAAGACA+TGG | + | chr8_3:5227348-5227367 | None:intergenic | 40.0% | |
| TTGTTTGCCTCATGTGCTAA+AGG | - | chr8_3:5227364-5227383 | Msa1271780:intron | 40.0% | |
| GTAATGTCCTTTAGCACATG+AGG | + | chr8_3:5227374-5227393 | None:intergenic | 40.0% | |
| TTGCAGCATCAACCTAAAAC+AGG | + | chr8_3:5227401-5227420 | None:intergenic | 40.0% | |
| !!! | TGTTTTAGGTTGATGCTGCA+AGG | - | chr8_3:5227400-5227419 | Msa1271780:intron | 40.0% |
| !! | TGTTGAGGAGGTATTTGAGT+CGG | - | chr8_3:5227425-5227444 | Msa1271780:intron | 40.0% |
| AGGTGGTTGCGTGATAGTAA+CGG | + | chr8_3:5223394-5223413 | None:intergenic | 45.0% | |
| ! | GAAAGCGCGAAAACGTGAAT+TGG | + | chr8_3:5223606-5223625 | None:intergenic | 45.0% |
| GTGTTTGATGTTGCCGAGTA+CGG | - | chr8_3:5224088-5224107 | Msa1271780:CDS | 45.0% | |
| AACTTCCTATCCTCCGTACT+CGG | + | chr8_3:5224104-5224123 | None:intergenic | 45.0% | |
| CGCATGCACGAAATCAAACA+CGG | + | chr8_3:5224303-5224322 | None:intergenic | 45.0% | |
| CTTTCATCAAATGCCACGCA+AGG | + | chr8_3:5224457-5224476 | None:intergenic | 45.0% | |
| ! | TCCCTCATTAAGTTGCGGTT+TGG | - | chr8_3:5224829-5224848 | Msa1271780:intron | 45.0% |
| GCCAAACCGCAACTTAATGA+GGG | + | chr8_3:5224833-5224852 | None:intergenic | 45.0% | |
| TGCCAAACCGCAACTTAATG+AGG | + | chr8_3:5224834-5224853 | None:intergenic | 45.0% | |
| ! | TGCGGTTTGGCATTAGTGAA+AGG | - | chr8_3:5224842-5224861 | Msa1271780:intron | 45.0% |
| TCCAAATGAGCTATGCTCAC+CGG | + | chr8_3:5225189-5225208 | None:intergenic | 45.0% | |
| GTGAGCATAGCTCATTTGGA+AGG | - | chr8_3:5225189-5225208 | Msa1271780:intron | 45.0% | |
| TTTGCGGTCAAATAGCCTAG+TGG | + | chr8_3:5225288-5225307 | None:intergenic | 45.0% | |
| GCGATTAGTGGGATAATGCT+TGG | - | chr8_3:5225440-5225459 | Msa1271780:intron | 45.0% | |
| ! | AGCTCTCATGGGAAGCTTTT+TGG | - | chr8_3:5226002-5226021 | Msa1271780:intron | 45.0% |
| !! | TGATAATGGTACAGGTGGTC+CGG | - | chr8_3:5226345-5226364 | Msa1271780:intron | 45.0% |
| ! | ATTTGATTTCCGCTCGCAGA+AGG | + | chr8_3:5226441-5226460 | None:intergenic | 45.0% |
| GGACTACGGATCTATCACTA+AGG | + | chr8_3:5226496-5226515 | None:intergenic | 45.0% | |
| CAATGCTCAGAAGTTGACGT+TGG | + | chr8_3:5226677-5226696 | None:intergenic | 45.0% | |
| CAGCTTAAACTCGATGCAGA+TGG | + | chr8_3:5226711-5226730 | None:intergenic | 45.0% | |
| AGCCTAATTGTTACCTCGGA+AGG | + | chr8_3:5226819-5226838 | None:intergenic | 45.0% | |
| CAACAAGCAATGCAAGACAG+TGG | - | chr8_3:5226843-5226862 | Msa1271780:intron | 45.0% | |
| ! | TGATGGTTTTCCTCGCAATG+AGG | - | chr8_3:5226884-5226903 | Msa1271780:intron | 45.0% |
| TGATTGCCCAGAGGAAGAAA+TGG | - | chr8_3:5227071-5227090 | Msa1271780:intron | 45.0% | |
| GTCTCTCCATTTCTTCCTCT+GGG | + | chr8_3:5227080-5227099 | None:intergenic | 45.0% | |
| TGGAGAGACGACTTCTTAGT+AGG | - | chr8_3:5227091-5227110 | Msa1271780:intron | 45.0% | |
| ACGACTTCTTAGTAGGAACC+AGG | - | chr8_3:5227098-5227117 | Msa1271780:intron | 45.0% | |
| TGCAAAGGGAAAAGTTCGCA+AGG | - | chr8_3:5227301-5227320 | Msa1271780:intron | 45.0% | |
| GACTCAAATACCTCCTCAAC+AGG | + | chr8_3:5227426-5227445 | None:intergenic | 45.0% | |
| !! | AAAAAAAGAATTATATAATT+TGG | - | chr8_3:5225308-5225327 | Msa1271780:intron | 5.0% |
| !!! | TTTAAAAAAATATTTTTTGT+TGG | + | chr8_3:5225375-5225394 | None:intergenic | 5.0% |
| !!! | TTTTAAAGAATTAAATAATA+TGG | - | chr8_3:5225388-5225407 | Msa1271780:intron | 5.0% |
| ! | GTAATGGAAGGAAAGGGAGG+TGG | + | chr8_3:5223411-5223430 | None:intergenic | 50.0% |
| ! | GGAGTAATGGAAGGAAAGGG+AGG | + | chr8_3:5223414-5223433 | None:intergenic | 50.0% |
| TCTCTCCTCTTTCGCGCAAA+AGG | - | chr8_3:5223556-5223575 | Msa1271780:CDS | 50.0% | |
| ! | CGTTACCTTTTGCGCGAAAG+AGG | + | chr8_3:5223564-5223583 | None:intergenic | 50.0% |
| TTTGATGTTGCCGAGTACGG+AGG | - | chr8_3:5224091-5224110 | Msa1271780:CDS | 50.0% | |
| CCAAATGAGCTATGCTCACC+GGG | + | chr8_3:5225188-5225207 | None:intergenic | 50.0% | |
| GCATTGCAGTATGCAGGTGT+CGG | - | chr8_3:5225212-5225231 | Msa1271780:intron | 50.0% | |
| CATTGCAGTATGCAGGTGTC+GGG | - | chr8_3:5225213-5225232 | Msa1271780:intron | 50.0% | |
| ! | ATTGCAGTATGCAGGTGTCG+GGG | - | chr8_3:5225214-5225233 | Msa1271780:intron | 50.0% |
| AGCTGAATGAGCGAGGAATC+CGG | + | chr8_3:5225247-5225266 | None:intergenic | 50.0% | |
| CCTCGCTCATTCAGCTTAAG+CGG | - | chr8_3:5225251-5225270 | Msa1271780:intron | 50.0% | |
| !! | GCGGTGAATTTCTAGCCACT+AGG | - | chr8_3:5225270-5225289 | Msa1271780:CDS | 50.0% |
| GCGGTCAGGTCAGTACTAAT+AGG | + | chr8_3:5225422-5225441 | None:intergenic | 50.0% | |
| TTATCCCACTAATCGCGGTC+AGG | + | chr8_3:5225436-5225455 | None:intergenic | 50.0% | |
| ! | GATAATGGTACAGGTGGTCC+GGG | - | chr8_3:5226346-5226365 | Msa1271780:intron | 50.0% |
| CTGCGAGCGGAAATCAAATC+TGG | - | chr8_3:5226442-5226461 | Msa1271780:intron | 50.0% | |
| CTCAGAAGTTGACGTTGGTC+AGG | + | chr8_3:5226672-5226691 | None:intergenic | 50.0% | |
| CCACTCTCTCAAATGCTGCA+CGG | + | chr8_3:5226914-5226933 | None:intergenic | 50.0% | |
| ! | TGCATCATGGCTTTGCAGAC+TGG | - | chr8_3:5227021-5227040 | Msa1271780:intron | 50.0% |
| CGTCTCTCCATTTCTTCCTC+TGG | + | chr8_3:5227081-5227100 | None:intergenic | 50.0% | |
| TGTTGCCGAGTACGGAGGAT+AGG | - | chr8_3:5224096-5224115 | Msa1271780:CDS | 55.0% | |
| CCCGGTGAGCATAGCTCATT+TGG | - | chr8_3:5225185-5225204 | Msa1271780:intron | 55.0% | |
| !! | GGAAGGGCATTGCAGTATGC+AGG | - | chr8_3:5225206-5225225 | Msa1271780:intron | 55.0% |
| GCTGAATGAGCGAGGAATCC+GGG | + | chr8_3:5225246-5225265 | None:intergenic | 55.0% | |
| CCGCTTAAGCTGAATGAGCG+AGG | + | chr8_3:5225254-5225273 | None:intergenic | 55.0% | |
| ACTGACCTGACCGCGATTAG+TGG | - | chr8_3:5225428-5225447 | Msa1271780:intron | 55.0% | |
| CTGACCTGACCGCGATTAGT+GGG | - | chr8_3:5225429-5225448 | Msa1271780:intron | 55.0% | |
| ! | TGGGTACCTTTTCCACTGCC+CGG | + | chr8_3:5226367-5226386 | None:intergenic | 55.0% |
| GGGTTTACTCACCTCAGTGC+TGG | - | chr8_3:5226412-5226431 | Msa1271780:intron | 55.0% | |
| ! | GCACGGTTTTCCTCATTGCG+AGG | + | chr8_3:5226897-5226916 | None:intergenic | 55.0% |
| CCGTGCAGCATTTGAGAGAG+TGG | - | chr8_3:5226911-5226930 | Msa1271780:intron | 55.0% | |
| TGATGCTGCAAGGCCTGTTG+AGG | - | chr8_3:5227410-5227429 | Msa1271780:intron | 55.0% | |
| GCAGAAGGTCACCAGCACTG+AGG | + | chr8_3:5226426-5226445 | None:intergenic | 60.0% | |
| TGCTGGTGACCTTCTGCGAG+CGG | - | chr8_3:5226429-5226448 | Msa1271780:intron | 60.0% | |
| TGCTGCAAGGCCTGTTGAGG+AGG | - | chr8_3:5227413-5227432 | Msa1271780:intron | 60.0% | |
| !! | CAGGTGTCGGGGTTCGAACC+CGG | - | chr8_3:5225225-5225244 | Msa1271780:intron | 65.0% |
| GGTGGTCCGGGCAGTGGAAA+AGG | - | chr8_3:5226358-5226377 | Msa1271780:intron | 65.0% | |
| GGTACAGGTGGTCCGGGCAG+TGG | - | chr8_3:5226352-5226371 | Msa1271780:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 5223285 | 5227719 | 5223285 | ID=Msa1271780;Name=Msa1271780 |
| chr8_3 | mRNA | 5223285 | 5227719 | 5223285 | ID=Msa1271780-mRNA-1;Parent=Msa1271780;Name=Msa1271780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=320|1|1|1|0.85|0.75|8|144|237 |
| chr8_3 | exon | 5223285 | 5223596 | 5223285 | ID=Msa1271780-mRNA-1:exon:1864;Parent=Msa1271780-mRNA-1 |
| chr8_3 | exon | 5223682 | 5223789 | 5223682 | ID=Msa1271780-mRNA-1:exon:1863;Parent=Msa1271780-mRNA-1 |
| chr8_3 | exon | 5223885 | 5223965 | 5223885 | ID=Msa1271780-mRNA-1:exon:1862;Parent=Msa1271780-mRNA-1 |
| chr8_3 | exon | 5224072 | 5224228 | 5224072 | ID=Msa1271780-mRNA-1:exon:1861;Parent=Msa1271780-mRNA-1 |
| chr8_3 | exon | 5224528 | 5224645 | 5224528 | ID=Msa1271780-mRNA-1:exon:1860;Parent=Msa1271780-mRNA-1 |
| chr8_3 | exon | 5225261 | 5225312 | 5225261 | ID=Msa1271780-mRNA-1:exon:1859;Parent=Msa1271780-mRNA-1 |
| chr8_3 | exon | 5225960 | 5226016 | 5225960 | ID=Msa1271780-mRNA-1:exon:1858;Parent=Msa1271780-mRNA-1 |
| chr8_3 | exon | 5227427 | 5227719 | 5227427 | ID=Msa1271780-mRNA-1:exon:1857;Parent=Msa1271780-mRNA-1 |
| chr8_3 | five_prime_UTR | 5227427 | 5227719 | 5227427 | ID=Msa1271780-mRNA-1:five_prime_utr;Parent=Msa1271780-mRNA-1 |
| chr8_3 | five_prime_UTR | 5225990 | 5226016 | 5225990 | ID=Msa1271780-mRNA-1:five_prime_utr;Parent=Msa1271780-mRNA-1 |
| chr8_3 | CDS | 5225960 | 5225989 | 5225960 | ID=Msa1271780-mRNA-1:cds;Parent=Msa1271780-mRNA-1 |
| chr8_3 | CDS | 5225261 | 5225312 | 5225261 | ID=Msa1271780-mRNA-1:cds;Parent=Msa1271780-mRNA-1 |
| chr8_3 | CDS | 5224528 | 5224645 | 5224528 | ID=Msa1271780-mRNA-1:cds;Parent=Msa1271780-mRNA-1 |
| chr8_3 | CDS | 5224072 | 5224228 | 5224072 | ID=Msa1271780-mRNA-1:cds;Parent=Msa1271780-mRNA-1 |
| chr8_3 | CDS | 5223885 | 5223965 | 5223885 | ID=Msa1271780-mRNA-1:cds;Parent=Msa1271780-mRNA-1 |
| chr8_3 | CDS | 5223682 | 5223789 | 5223682 | ID=Msa1271780-mRNA-1:cds;Parent=Msa1271780-mRNA-1 |
| chr8_3 | CDS | 5223429 | 5223596 | 5223429 | ID=Msa1271780-mRNA-1:cds;Parent=Msa1271780-mRNA-1 |
| chr8_3 | three_prime_UTR | 5223285 | 5223428 | 5223285 | ID=Msa1271780-mRNA-1:three_prime_utr;Parent=Msa1271780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
