Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435440 | XP_003626830.1 | 97.115 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 4.81e-146 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435440 | sp|O04905|KCY3_ARATH | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.91e-122 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435440 | B7FMF1 | 97.115 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 2.30e-146 | 415 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa1435440 | 0.806582 | 7.671320e-50 | -8.615850e-47 |
| Msa0007850 | Msa1435440 | 0.837960 | 3.819154e-57 | -8.615850e-47 |
| Msa0033880 | Msa1435440 | 0.865639 | 5.105095e-65 | -8.615850e-47 |
| Msa0047640 | Msa1435440 | 0.808857 | 2.519922e-50 | -8.615850e-47 |
| Msa0055100 | Msa1435440 | 0.802906 | 4.490981e-49 | -8.615850e-47 |
| Msa0056270 | Msa1435440 | 0.843240 | 1.582043e-58 | -8.615850e-47 |
| Msa0076040 | Msa1435440 | 0.805245 | 1.465228e-49 | -8.615850e-47 |
| Msa0077010 | Msa1435440 | 0.841240 | 5.356105e-58 | -8.615850e-47 |
| Msa0097950 | Msa1435440 | 0.803656 | 3.141815e-49 | -8.615850e-47 |
| Msa0101180 | Msa1435440 | 0.800928 | 1.145054e-48 | -8.615850e-47 |
| Msa0108550 | Msa1435440 | 0.812987 | 3.214865e-51 | -8.615850e-47 |
| Msa0115370 | Msa1435440 | 0.814665 | 1.372613e-51 | -8.615850e-47 |
| Msa1349570 | Msa1435440 | 0.804715 | 1.891135e-49 | -8.615850e-47 |
| Msa1356610 | Msa1435440 | 0.807910 | 4.012365e-50 | -8.615850e-47 |
| Msa1366170 | Msa1435440 | 0.826697 | 2.352529e-54 | -8.615850e-47 |
| Msa1369190 | Msa1435440 | 0.811274 | 7.598413e-51 | -8.615850e-47 |
| Msa1369890 | Msa1435440 | 0.819811 | 9.547527e-53 | -8.615850e-47 |
| Msa1373820 | Msa1435440 | 0.815362 | 9.609752e-52 | -8.615850e-47 |
| Msa1374170 | Msa1435440 | 0.801716 | 7.895948e-49 | -8.615850e-47 |
| Msa1382670 | Msa1435440 | 0.809386 | 1.941193e-50 | -8.615850e-47 |
| Msa1385810 | Msa1435440 | 0.800918 | 1.150494e-48 | -8.615850e-47 |
| Msa1391480 | Msa1435440 | 0.808293 | 3.325608e-50 | -8.615850e-47 |
| Msa1393430 | Msa1435440 | 0.914655 | 1.484729e-84 | -8.615850e-47 |
| Msa1398790 | Msa1435440 | 0.811374 | 7.229828e-51 | -8.615850e-47 |
| Msa1409260 | Msa1435440 | 0.808352 | 3.230351e-50 | -8.615850e-47 |
| Msa1411950 | Msa1435440 | 0.826393 | 2.781070e-54 | -8.615850e-47 |
| Msa1421560 | Msa1435440 | 0.805201 | 1.496525e-49 | -8.615850e-47 |
| Msa1426490 | Msa1435440 | 0.801319 | 9.521858e-49 | -8.615850e-47 |
| Msa1432480 | Msa1435440 | 0.826517 | 2.597153e-54 | -8.615850e-47 |
| Msa1435440 | Msa1435770 | 0.802471 | 5.524107e-49 | -8.615850e-47 |
| Msa1435440 | Msa1443930 | 0.823322 | 1.474217e-53 | -8.615850e-47 |
| Msa1435440 | Msa1459910 | 0.814112 | 1.818776e-51 | -8.615850e-47 |
| Msa0610090 | Msa1435440 | 0.806136 | 9.522516e-50 | -8.615850e-47 |
| Msa0618950 | Msa1435440 | 0.811770 | 5.927804e-51 | -8.615850e-47 |
| Msa0619860 | Msa1435440 | 0.805080 | 1.586313e-49 | -8.615850e-47 |
| Msa0628420 | Msa1435440 | 0.804882 | 1.744755e-49 | -8.615850e-47 |
| Msa0633570 | Msa1435440 | 0.870951 | 9.896005e-67 | -8.615850e-47 |
| Msa0656810 | Msa1435440 | 0.823391 | 1.420285e-53 | -8.615850e-47 |
| Msa0658480 | Msa1435440 | 0.810264 | 1.256845e-50 | -8.615850e-47 |
| Msa0659030 | Msa1435440 | 0.838739 | 2.404273e-57 | -8.615850e-47 |
| Msa0659990 | Msa1435440 | 0.821634 | 3.636944e-53 | -8.615850e-47 |
| Msa0683780 | Msa1435440 | 0.813981 | 1.943910e-51 | -8.615850e-47 |
| Msa0697720 | Msa1435440 | 0.802583 | 5.237857e-49 | -8.615850e-47 |
| Msa0705000 | Msa1435440 | 0.868180 | 7.906345e-66 | -8.615850e-47 |
| Msa0705040 | Msa1435440 | 0.859467 | 4.053154e-63 | -8.615850e-47 |
| Msa0707390 | Msa1435440 | 0.804697 | 1.907232e-49 | -8.615850e-47 |
| Msa0724150 | Msa1435440 | 0.808723 | 2.691983e-50 | -8.615850e-47 |
| Msa0744100 | Msa1435440 | 0.816767 | 4.667510e-52 | -8.615850e-47 |
| Msa0783490 | Msa1435440 | 0.816942 | 4.262648e-52 | -8.615850e-47 |
| Msa0785130 | Msa1435440 | 0.821724 | 3.467858e-53 | -8.615850e-47 |
| Msa0788120 | Msa1435440 | 0.834239 | 3.362240e-56 | -8.615850e-47 |
| Msa0819540 | Msa1435440 | 0.849350 | 3.421284e-60 | -8.615850e-47 |
| Msa0825270 | Msa1435440 | 0.835121 | 2.017936e-56 | -8.615850e-47 |
| Msa0826510 | Msa1435440 | 0.821849 | 3.244986e-53 | -8.615850e-47 |
| Msa0828680 | Msa1435440 | 0.803996 | 2.670240e-49 | -8.615850e-47 |
| Msa0836500 | Msa1435440 | 0.804560 | 2.037276e-49 | -8.615850e-47 |
| Msa0126770 | Msa1435440 | 0.805277 | 1.442978e-49 | -8.615850e-47 |
| Msa0126840 | Msa1435440 | 0.801704 | 7.943074e-49 | -8.615850e-47 |
| Msa0127040 | Msa1435440 | 0.820044 | 8.445074e-53 | -8.615850e-47 |
| Msa0127530 | Msa1435440 | 0.831685 | 1.451097e-55 | -8.615850e-47 |
| Msa0127850 | Msa1435440 | 0.874129 | 8.597670e-68 | -8.615850e-47 |
| Msa0142410 | Msa1435440 | 0.806551 | 7.785789e-50 | -8.615850e-47 |
| Msa0165440 | Msa1435440 | 0.801748 | 7.779338e-49 | -8.615850e-47 |
| Msa0166750 | Msa1435440 | 0.848837 | 4.750115e-60 | -8.615850e-47 |
| Msa0171850 | Msa1435440 | 0.806367 | 8.513014e-50 | -8.615850e-47 |
| Msa0174000 | Msa1435440 | 0.856178 | 3.835753e-62 | -8.615850e-47 |
| Msa0177360 | Msa1435440 | 0.824812 | 6.590759e-54 | -8.615850e-47 |
| Msa0179030 | Msa1435440 | 0.801898 | 7.246316e-49 | -8.615850e-47 |
| Msa0181610 | Msa1435440 | 0.803788 | 2.949722e-49 | -8.615850e-47 |
| Msa0207710 | Msa1435440 | 0.804088 | 2.554970e-49 | -8.615850e-47 |
| Msa0221030 | Msa1435440 | 0.828753 | 7.545295e-55 | -8.615850e-47 |
| Msa1227690 | Msa1435440 | 0.831711 | 1.429470e-55 | -8.615850e-47 |
| Msa1229620 | Msa1435440 | 0.960073 | 3.799820e-118 | -8.615850e-47 |
| Msa1235250 | Msa1435440 | 0.825991 | 3.465747e-54 | -8.615850e-47 |
| Msa1254710 | Msa1435440 | 0.809860 | 1.535894e-50 | -8.615850e-47 |
| Msa1256770 | Msa1435440 | 0.815247 | 1.019662e-51 | -8.615850e-47 |
| Msa1271780 | Msa1435440 | 0.907640 | 4.071780e-81 | -8.615850e-47 |
| Msa1294840 | Msa1435440 | 0.847471 | 1.132338e-59 | -8.615850e-47 |
| Msa1310230 | Msa1435440 | 0.962929 | 1.818034e-121 | -8.615850e-47 |
| Msa1330270 | Msa1435440 | 0.803052 | 4.189323e-49 | -8.615850e-47 |
| Msa0384670 | Msa1435440 | 0.806779 | 6.968949e-50 | -8.615850e-47 |
| Msa0384880 | Msa1435440 | 0.824769 | 6.744430e-54 | -8.615850e-47 |
| Msa0389510 | Msa1435440 | 0.804094 | 2.547535e-49 | -8.615850e-47 |
| Msa0456430 | Msa1435440 | 0.813463 | 2.527270e-51 | -8.615850e-47 |
| Msa0474700 | Msa1435440 | 0.815700 | 8.083025e-52 | -8.615850e-47 |
| Msa0980940 | Msa1435440 | 0.815610 | 8.462428e-52 | -8.615850e-47 |
| Msa0981430 | Msa1435440 | 0.820139 | 8.029528e-53 | -8.615850e-47 |
| Msa1025940 | Msa1435440 | 0.833659 | 4.698138e-56 | -8.615850e-47 |
| Msa1034720 | Msa1435440 | 0.806847 | 6.742082e-50 | -8.615850e-47 |
| Msa1070390 | Msa1435440 | 0.806503 | 7.968934e-50 | -8.615850e-47 |
| Msa1072710 | Msa1435440 | 0.803139 | 4.019478e-49 | -8.615850e-47 |
| Msa1082690 | Msa1435440 | 0.810314 | 1.225641e-50 | -8.615850e-47 |
| Msa1083880 | Msa1435440 | 0.831671 | 1.462859e-55 | -8.615850e-47 |
| Msa0245060 | Msa1435440 | 0.821175 | 4.642962e-53 | -8.615850e-47 |
| Msa0262480 | Msa1435440 | 0.815428 | 9.292770e-52 | -8.615850e-47 |
| Msa0291520 | Msa1435440 | 0.825927 | 3.589680e-54 | -8.615850e-47 |
| Msa0300350 | Msa1435440 | 0.816662 | 4.926337e-52 | -8.615850e-47 |
| Msa0359600 | Msa1435440 | 0.824075 | 9.821903e-54 | -8.615850e-47 |
| Msa0363060 | Msa1435440 | 0.818155 | 2.272258e-52 | -8.615850e-47 |
| Msa1123350 | Msa1435440 | 0.831162 | 1.951364e-55 | -8.615850e-47 |
| Msa1125500 | Msa1435440 | 0.801175 | 1.019020e-48 | -8.615850e-47 |
| Msa1125580 | Msa1435440 | 0.816017 | 6.867215e-52 | -8.615850e-47 |
| Msa1127540 | Msa1435440 | 0.800952 | 1.132201e-48 | -8.615850e-47 |
| Msa1145240 | Msa1435440 | 0.814808 | 1.275675e-51 | -8.615850e-47 |
| Msa1162080 | Msa1435440 | 0.813524 | 2.451088e-51 | -8.615850e-47 |
| Msa1184370 | Msa1435440 | 0.816825 | 4.529298e-52 | -8.615850e-47 |
| Msa1201830 | Msa1435440 | 0.847473 | 1.131192e-59 | -8.615850e-47 |
| Msa1205850 | Msa1435440 | 0.814346 | 1.614511e-51 | -8.615850e-47 |
| Msa1207730 | Msa1435440 | 0.810317 | 1.224336e-50 | -8.615850e-47 |
| Msa0531250 | Msa1435440 | 0.803594 | 3.235816e-49 | -8.615850e-47 |
| Msa0534750 | Msa1435440 | 0.806023 | 1.005742e-49 | -8.615850e-47 |
| Msa0547990 | Msa1435440 | 0.801759 | 7.737776e-49 | -8.615850e-47 |
| Msa0550570 | Msa1435440 | 0.804033 | 2.623634e-49 | -8.615850e-47 |
| Msa0580230 | Msa1435440 | 0.800404 | 1.464523e-48 | -8.615850e-47 |
| Msa0593700 | Msa1435440 | 0.861150 | 1.255780e-63 | -8.615850e-47 |
| Msa0864420 | Msa1435440 | 0.820304 | 7.360166e-53 | -8.615850e-47 |
| Msa0865620 | Msa1435440 | 0.815411 | 9.371033e-52 | -8.615850e-47 |
| Msa0888940 | Msa1435440 | 0.807889 | 4.054658e-50 | -8.615850e-47 |
| Msa0897400 | Msa1435440 | 0.810547 | 1.091593e-50 | -8.615850e-47 |
| Msa0943170 | Msa1435440 | 0.833038 | 6.709848e-56 | -8.615850e-47 |
| Msa0963020 | Msa1435440 | 0.849918 | 2.375460e-60 | -8.615850e-47 |
| Msa0968440 | Msa1435440 | 0.852306 | 5.033679e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435440 | MtrunA17_Chr8g0337051 | 97.115 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 4.42e-150 | 415 |
| Msa1435440 | MtrunA17_Chr5g0428971 | 60.753 | 186 | 73 | 0 | 22 | 207 | 32 | 217 | 2.76e-81 | 241 |
| Msa1435440 | MtrunA17_Chr4g0018221 | 60.753 | 186 | 73 | 0 | 22 | 207 | 55 | 240 | 7.14e-81 | 241 |
| Msa1435440 | MtrunA17_Chr4g0017231 | 34.375 | 128 | 81 | 2 | 19 | 144 | 85 | 211 | 8.46e-24 | 96.3 |
| Msa1435440 | MtrunA17_Chr2g0305051 | 27.803 | 223 | 129 | 5 | 6 | 201 | 59 | 276 | 8.51e-24 | 98.6 |
| Msa1435440 | MtrunA17_Chr4g0057771 | 26.066 | 211 | 123 | 4 | 24 | 201 | 32 | 242 | 7.58e-20 | 84.3 |
| Msa1435440 | MtrunA17_Chr1g0181801 | 25.888 | 197 | 101 | 4 | 27 | 180 | 117 | 311 | 6.53e-16 | 75.1 |
| Msa1435440 | MtrunA17_Chr7g0263541 | 24.424 | 217 | 122 | 4 | 18 | 193 | 34 | 249 | 1.19e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435440 | AT5G26667.3 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 6.01e-123 | 346 |
| Msa1435440 | AT5G26667.2 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 6.01e-123 | 346 |
| Msa1435440 | AT5G26667.4 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 6.01e-123 | 346 |
| Msa1435440 | AT5G26667.1 | 81.553 | 206 | 31 | 2 | 1 | 206 | 1 | 199 | 1.03e-122 | 346 |
| Msa1435440 | AT3G60180.1 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 1.67e-108 | 310 |
| Msa1435440 | AT3G60180.2 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 1.67e-108 | 310 |
| Msa1435440 | AT4G25280.1 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.19e-78 | 236 |
| Msa1435440 | AT4G25280.2 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.19e-78 | 236 |
| Msa1435440 | AT3G60961.1 | 68.421 | 133 | 38 | 1 | 73 | 201 | 1 | 133 | 5.75e-66 | 199 |
| Msa1435440 | AT5G35170.2 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 4.32e-27 | 108 |
| Msa1435440 | AT5G35170.1 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 5.06e-27 | 108 |
| Msa1435440 | AT5G47840.1 | 30.144 | 209 | 116 | 4 | 20 | 201 | 63 | 268 | 1.81e-26 | 103 |
| Msa1435440 | AT5G47840.2 | 37.008 | 127 | 77 | 2 | 20 | 144 | 63 | 188 | 6.45e-26 | 101 |
| Msa1435440 | AT5G63400.1 | 27.488 | 211 | 120 | 4 | 24 | 201 | 36 | 246 | 1.63e-20 | 86.7 |
| Msa1435440 | AT5G50370.1 | 27.723 | 202 | 112 | 5 | 23 | 191 | 37 | 237 | 4.83e-18 | 80.1 |
| Msa1435440 | AT2G37250.1 | 25.238 | 210 | 112 | 3 | 27 | 193 | 57 | 264 | 3.05e-16 | 75.5 |
| Msa1435440 | AT2G39270.1 | 27.411 | 197 | 98 | 4 | 27 | 180 | 70 | 264 | 2.75e-15 | 73.2 |
| Msa1435440 | AT5G63400.2 | 31.200 | 125 | 82 | 2 | 24 | 144 | 36 | 160 | 6.14e-14 | 67.8 |
| Msa1435440 | AT5G50370.2 | 27.072 | 181 | 98 | 5 | 23 | 170 | 37 | 216 | 7.68e-14 | 68.2 |
Find 82 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAATCAGTTTGATTTAA+TGG | 0.106693 | tig0027703:+39064 | None:intergenic |
| ATCAAATCTGGCTCCGAAAA+TGG | 0.173136 | tig0027703:-42795 | Msa1435440:CDS |
| TTTAGTCGGTAGGGGTTAAA+TGG | 0.194002 | tig0027703:+45911 | None:intergenic |
| TTCCTTCTTTAATCATATTC+TGG | 0.194476 | tig0027703:+42464 | None:intergenic |
| GCAAATGTTGTCGAACATTT+TGG | 0.209865 | tig0027703:-42858 | Msa1435440:CDS |
| CGTCTCTCCATTTCTTCCTC+TGG | 0.293885 | tig0027703:+42171 | None:intergenic |
| AATGACAAATTTCTTATTGA+TGG | 0.306611 | tig0027703:-42382 | Msa1435440:CDS |
| TTCGACAACATTTGCACATT+GGG | 0.333869 | tig0027703:+42866 | None:intergenic |
| ATCGTTGAAGGTATTTATAT+TGG | 0.359065 | tig0027703:+45868 | None:intergenic |
| ACGACAACATTGAAACAATA+AGG | 0.372468 | tig0027703:-42024 | Msa1435440:CDS |
| CCTACAGTTGTGTTTGTGTT+AGG | 0.377583 | tig0027703:-43527 | Msa1435440:intron |
| CTCCAGAATTTGAAAATGTT+GGG | 0.382498 | tig0027703:+39132 | None:intergenic |
| CCTCTGGGCAATCAAAATAT+AGG | 0.386242 | tig0027703:+42187 | None:intergenic |
| GAGAAATTGTTGTTATGGTT+AGG | 0.392336 | tig0027703:+45845 | None:intergenic |
| GTCTCTCCATTTCTTCCTCT+GGG | 0.403856 | tig0027703:+42172 | None:intergenic |
| CTGCGAGCGGAAATCAAATC+TGG | 0.406089 | tig0027703:-42807 | Msa1435440:CDS |
| AATCTGAGAAATTGTTGTTA+TGG | 0.408867 | tig0027703:+45840 | None:intergenic |
| TGATTGCCCAGAGGAAGAAA+TGG | 0.417731 | tig0027703:-42178 | Msa1435440:CDS |
| GACTCAAATACCTCCTCAAC+AGG | 0.418858 | tig0027703:+41826 | None:intergenic |
| ACTCCAGAATTTGAAAATGT+TGG | 0.420168 | tig0027703:+39131 | None:intergenic |
| TTAGTCGGTAGGGGTTAAAT+GGG | 0.427969 | tig0027703:+45912 | None:intergenic |
| TGATAATGGTACAGGTGGTC+CGG | 0.428269 | tig0027703:-42904 | Msa1435440:intron |
| TTCCTTCCGAGGTAACAATT+AGG | 0.429145 | tig0027703:-42435 | Msa1435440:CDS |
| TCTCTCCTCTTTCGCGCAAA+AGG | 0.438303 | tig0027703:-45807 | Msa1435440:intron |
| ATTAATTATTATGATGCAAA+GGG | 0.443787 | tig0027703:-41962 | Msa1435440:CDS |
| AACAATAAGGAAGCGATTCA+AGG | 0.444129 | tig0027703:-42011 | Msa1435440:CDS |
| TCAAATCTGGCTCCGAAAAT+GGG | 0.446253 | tig0027703:-42794 | Msa1435440:intron |
| GGGTTTACTCACCTCAGTGC+TGG | 0.448432 | tig0027703:-42837 | Msa1435440:CDS |
| TTGCGTGCTGGATATTTAAG+AGG | 0.450042 | tig0027703:-40829 | Msa1435440:intron |
| GGTACAGGTGGTCCGGGCAG+TGG | 0.454545 | tig0027703:-42897 | Msa1435440:intron |
| AGTGTGTAAGTGCCCTTTGT+GGG | 0.455214 | tig0027703:-39111 | Msa1435440:three_prime_UTR |
| ATTTATTTGTAGGATACAAA+TGG | 0.459331 | tig0027703:-43569 | Msa1435440:intron |
| AATATAGAGGCAACAACCTC+AGG | 0.460417 | tig0027703:+39232 | None:intergenic |
| ATATTGGTGTTAAGAAAGTT+CGG | 0.460947 | tig0027703:+45884 | None:intergenic |
| TAAAATTTCGTATGGAGTAA+TGG | 0.466516 | tig0027703:+45939 | None:intergenic |
| TGGAGAGACGACTTCTTAGT+AGG | 0.467613 | tig0027703:-42158 | Msa1435440:CDS |
| GGTGGTCCGGGCAGTGGAAA+AGG | 0.473432 | tig0027703:-42891 | Msa1435440:CDS |
| AAATATCCAGCACGCAATCA+AGG | 0.478107 | tig0027703:+40835 | None:intergenic |
| TCAAAATATAGGACAAATGT+TGG | 0.497184 | tig0027703:+42198 | None:intergenic |
| ATCCAGAATATGATTAAAGA+AGG | 0.504467 | tig0027703:-42466 | Msa1435440:CDS |
| TGGGAAAATAAAATTTCGTA+TGG | 0.508074 | tig0027703:+45931 | None:intergenic |
| ATATCTAGCAACAAAATATG+AGG | 0.509211 | tig0027703:+39273 | None:intergenic |
| TGATTCTTATGTTCATTCGA+TGG | 0.509409 | tig0027703:-39050 | None:intergenic |
| GTTATGGTTAGGATCGTTGA+AGG | 0.512352 | tig0027703:+45856 | None:intergenic |
| GCATCATAATAATTAATCAC+AGG | 0.514630 | tig0027703:+41968 | None:intergenic |
| TGCCCTTTGTGGGTTTGTAG+TGG | 0.517614 | tig0027703:-39101 | Msa1435440:three_prime_UTR |
| AGTGTAGTTGATATTACTCA+TGG | 0.518202 | tig0027703:-44253 | Msa1435440:exon |
| GGTGCAACAATAGAATATAG+AGG | 0.520858 | tig0027703:+39219 | None:intergenic |
| GATAATGGTACAGGTGGTCC+GGG | 0.533653 | tig0027703:-42903 | Msa1435440:intron |
| AGCCTAATTGTTACCTCGGA+AGG | 0.535061 | tig0027703:+42433 | None:intergenic |
| GAGTGTGTAAGTGCCCTTTG+TGG | 0.535947 | tig0027703:-39112 | Msa1435440:three_prime_UTR |
| GTCCACTACAAACCCACAAA+GGG | 0.537093 | tig0027703:+39099 | None:intergenic |
| GTAATGGAAGGAAAGGGAGG+TGG | 0.538102 | tig0027703:+45955 | None:intergenic |
| GTTCGACAACATTTGCACAT+TGG | 0.539900 | tig0027703:+42865 | None:intergenic |
| GTATGGAGTAATGGAAGGAA+AGG | 0.543753 | tig0027703:+45948 | None:intergenic |
| GATTAATTATTATGATGCAA+AGG | 0.546499 | tig0027703:-41963 | Msa1435440:CDS |
| TTGTTTGAGTTATTTAAGCA+CGG | 0.546632 | tig0027703:-39165 | Msa1435440:three_prime_UTR |
| ATTTGATTTCCGCTCGCAGA+AGG | 0.550406 | tig0027703:+42811 | None:intergenic |
| CAGAAGCCTAATTGTTACCT+CGG | 0.555573 | tig0027703:+42429 | None:intergenic |
| GGAGTAATGGAAGGAAAGGG+AGG | 0.556953 | tig0027703:+45952 | None:intergenic |
| TGTTTGAGTTATTTAAGCAC+GGG | 0.562756 | tig0027703:-39164 | Msa1435440:three_prime_UTR |
| TGTTATTGAAGCTGCAAACA+AGG | 0.570574 | tig0027703:-44226 | Msa1435440:intron |
| CCGTGCAGCATTTGAGAGAG+TGG | 0.571248 | tig0027703:-42338 | Msa1435440:intron |
| TGCTGGTGACCTTCTGCGAG+CGG | 0.575371 | tig0027703:-42820 | Msa1435440:CDS |
| CATCATAATAATTAATCACA+GGG | 0.576231 | tig0027703:+41969 | None:intergenic |
| CCTAACACAAACACAACTGT+AGG | 0.576692 | tig0027703:+43527 | None:intergenic |
| ATTTCGTATGGAGTAATGGA+AGG | 0.578668 | tig0027703:+45943 | None:intergenic |
| TATGGAGTAATGGAAGGAAA+GGG | 0.582559 | tig0027703:+45949 | None:intergenic |
| TGTTGCCCTTGATTGCGTGC+TGG | 0.583464 | tig0027703:-40841 | Msa1435440:three_prime_UTR |
| AATATCCAGCACGCAATCAA+GGG | 0.591954 | tig0027703:+40836 | None:intergenic |
| TGTTGAGGAGGTATTTGAGT+CGG | 0.603618 | tig0027703:-41824 | Msa1435440:CDS |
| AGGTGGTTGCGTGATAGTAA+CGG | 0.605517 | tig0027703:+45972 | None:intergenic |
| TGCTGCAAGGCCTGTTGAGG+AGG | 0.615003 | tig0027703:-41836 | Msa1435440:CDS |
| GGTCCACTACAAACCCACAA+AGG | 0.618270 | tig0027703:+39098 | None:intergenic |
| CCACTCTCTCAAATGCTGCA+CGG | 0.625742 | tig0027703:+42338 | None:intergenic |
| TGATGCTGCAAGGCCTGTTG+AGG | 0.626580 | tig0027703:-41839 | Msa1435440:CDS |
| TGCAAAGGGAAAAGTTCGCA+AGG | 0.641623 | tig0027703:-41948 | Msa1435440:intron |
| ACGACTTCTTAGTAGGAACC+AGG | 0.649336 | tig0027703:-42151 | Msa1435440:intron |
| GTGTAGTTGATATTACTCAT+GGG | 0.660018 | tig0027703:-44252 | Msa1435440:exon |
| CAACAAGCAATGCAAGACAG+TGG | 0.683184 | tig0027703:-42406 | Msa1435440:CDS |
| TATAAATGAATGAGTCGACA+AGG | 0.689782 | tig0027703:+39198 | None:intergenic |
| GCAGAAGGTCACCAGCACTG+AGG | 0.757069 | tig0027703:+42826 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | + | tig0027703:44988-45007 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | tig0027703:44987-45006 | None:intergenic | 0.0% |
| !! | AATTCATTTACATAAAATTA+GGG | + | tig0027703:40660-40679 | None:intergenic | 10.0% |
| !! | TAATTCATTTACATAAAATT+AGG | + | tig0027703:40661-40680 | None:intergenic | 10.0% |
| !! | TTTACATAAATAATTTATCT+TGG | - | tig0027703:40807-40826 | Msa1435440:intron | 10.0% |
| !!! | ATATAATTCTTTTTTTTTTG+CGG | + | tig0027703:41184-41203 | None:intergenic | 10.0% |
| !! | TAAAATATGATAAAGTAAAA+GGG | + | tig0027703:43622-43641 | None:intergenic | 10.0% |
| !! | ATAAAATATGATAAAGTAAA+AGG | + | tig0027703:43623-43642 | None:intergenic | 10.0% |
| !! | TTAAATTTAAATAAAGATAC+TGG | - | tig0027703:43781-43800 | Msa1435440:intron | 10.0% |
| !!! | AAAATTTTGAAAATGATATT+GGG | - | tig0027703:43990-44009 | Msa1435440:intron | 10.0% |
| !! | AATATAGTAAGTTAATATTA+TGG | - | tig0027703:45607-45626 | Msa1435440:intron | 10.0% |
| !!! | TGAATTTTTAACATAGATTA+GGG | - | tig0027703:39896-39915 | Msa1435440:intron | 15.0% |
| !! | ATATGTAGATTTAATATGAT+AGG | - | tig0027703:40482-40501 | Msa1435440:intron | 15.0% |
| !! | ATTCATTTACATAAAATTAG+GGG | + | tig0027703:40659-40678 | None:intergenic | 15.0% |
| !! | TTATGTAAATGAATTATGAT+TGG | - | tig0027703:40665-40684 | Msa1435440:intron | 15.0% |
| !! | AATTATTTATGTAAAGAATC+AGG | + | tig0027703:40802-40821 | None:intergenic | 15.0% |
| !! | TCTATAGAATTATAGAATTT+GGG | - | tig0027703:41041-41060 | Msa1435440:intron | 15.0% |
| !! | AAGAATTAAATAATATGGTT+TGG | - | tig0027703:41273-41292 | Msa1435440:intron | 15.0% |
| !! | TGAATTCTATAATTAAACAA+AGG | + | tig0027703:41417-41436 | None:intergenic | 15.0% |
| !! | TATTGATCTAATAATGATAA+TGG | - | tig0027703:42211-42230 | Msa1435440:CDS | 15.0% |
| !! | ATTAATTATTATGATGCAAA+GGG | - | tig0027703:43167-43186 | Msa1435440:intron | 15.0% |
| !!! | CAAAATTTTGAAAATGATAT+TGG | - | tig0027703:43989-44008 | Msa1435440:intron | 15.0% |
| !! | ATGACAAAATAAAATGTATA+GGG | + | tig0027703:44333-44352 | None:intergenic | 15.0% |
| !! | TATGACAAAATAAAATGTAT+AGG | + | tig0027703:44334-44353 | None:intergenic | 15.0% |
| !!! | TATTTTTTCCATTTTTTTTC+AGG | - | tig0027703:45804-45823 | Msa1435440:intron | 15.0% |
| !! | GATTTAATGGTTAAAAATAT+TGG | + | tig0027703:46055-46074 | None:intergenic | 15.0% |
| !!! | TGAAATTTTCAACATTGATT+AGG | - | tig0027703:39558-39577 | Msa1435440:intron | 20.0% |
| !!! | CTGAATTTTTAACATAGATT+AGG | - | tig0027703:39895-39914 | Msa1435440:intron | 20.0% |
| !!! | TGAATTTTTTGACACTAATT+AGG | - | tig0027703:40000-40019 | Msa1435440:intron | 20.0% |
| !!! | GAATTTTTTGACACTAATTA+GGG | - | tig0027703:40001-40020 | Msa1435440:intron | 20.0% |
| !! | TATCTGCAAATAAAGAAATA+CGG | + | tig0027703:40851-40870 | None:intergenic | 20.0% |
| !!! | AATCAGATTTTCAAAAGAAA+CGG | + | tig0027703:40989-41008 | None:intergenic | 20.0% |
| !! | CTCTATAGAATTATAGAATT+TGG | - | tig0027703:41040-41059 | Msa1435440:intron | 20.0% |
| !! | TTAATCACTTATTTGATTGT+AGG | - | tig0027703:41480-41499 | Msa1435440:intron | 20.0% |
| !! | TCAATTCTTCATTTATTTGT+AGG | - | tig0027703:41550-41569 | Msa1435440:intron | 20.0% |
| !! | ATTTATTTGTAGGATACAAA+TGG | - | tig0027703:41560-41579 | Msa1435440:intron | 20.0% |
| !!! | ACTGCTTGTTATAAATAAAT+TGG | + | tig0027703:41734-41753 | None:intergenic | 20.0% |
| !!! | GCTTTTTTATGTTTATCTTA+AGG | + | tig0027703:41989-42008 | None:intergenic | 20.0% |
| !!! | ATATAATTTGTACCCATTTT+CGG | + | tig0027703:42350-42369 | None:intergenic | 20.0% |
| !! | ACTATTTCAAAAGAAGAAAA+GGG | + | tig0027703:42421-42440 | None:intergenic | 20.0% |
| !! | TACTATTTCAAAAGAAGAAA+AGG | + | tig0027703:42422-42441 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTGAAATAGTAAA+TGG | - | tig0027703:42424-42443 | Msa1435440:CDS | 20.0% |
| !! | AATTTCTATGTATTTATGCT+AGG | - | tig0027703:42509-42528 | Msa1435440:intron | 20.0% |
| !! | AATGACAAATTTCTTATTGA+TGG | - | tig0027703:42747-42766 | Msa1435440:intron | 20.0% |
| !! | CATCATAATAATTAATCACA+GGG | + | tig0027703:43163-43182 | None:intergenic | 20.0% |
| !! | GATTAATTATTATGATGCAA+AGG | - | tig0027703:43166-43185 | Msa1435440:intron | 20.0% |
| !!! | ATTTTCTCTTTGATAGAAAA+TGG | + | tig0027703:43410-43429 | None:intergenic | 20.0% |
| !! | TTTCTATCAAAGAGAAAATT+TGG | - | tig0027703:43411-43430 | Msa1435440:intron | 20.0% |
| !! | TTTATTTAAAAACTCATGCA+AGG | + | tig0027703:43525-43544 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTACAATGCATTA+TGG | - | tig0027703:43641-43660 | Msa1435440:intron | 20.0% |
| !! | ATTAAGAACAATATTAACAG+TGG | - | tig0027703:43695-43714 | Msa1435440:intron | 20.0% |
| !! | AATTATAATTTCAATGTGCT+TGG | + | tig0027703:44149-44168 | None:intergenic | 20.0% |
| !! | ACAAAAAAATATTACTGAGT+GGG | - | tig0027703:44416-44435 | Msa1435440:intron | 20.0% |
| !!! | TAGATTAGATATTTTGTTGA+TGG | - | tig0027703:44673-44692 | Msa1435440:intron | 20.0% |
| !! | TGAAATTGATAAGAAAAGAA+AGG | - | tig0027703:44724-44743 | Msa1435440:intron | 20.0% |
| !!! | AATCCATATAATAAGCTTTT+TGG | + | tig0027703:44957-44976 | None:intergenic | 20.0% |
| !! | AAGTTAATAAATACACCTTA+AGG | + | tig0027703:45323-45342 | None:intergenic | 20.0% |
| !! | ATATACAATTCATATCAAAC+TGG | - | tig0027703:45438-45457 | Msa1435440:intron | 20.0% |
| !!! | AATTATAGATTTTGTATGCT+CGG | - | tig0027703:45537-45556 | Msa1435440:intron | 20.0% |
| !!! | TTAGATTTGTGAAGTATTTT+AGG | - | tig0027703:45580-45599 | Msa1435440:intron | 20.0% |
| !! | TCATTTGTTTATTATTGCAT+TGG | - | tig0027703:45686-45705 | Msa1435440:intron | 20.0% |
| !!! | TATTATTGCATTGGTTTTTA+TGG | - | tig0027703:45695-45714 | Msa1435440:intron | 20.0% |
| !!! | AAAAATGTATTTTATACCTG+AGG | - | tig0027703:45881-45900 | Msa1435440:five_prime_UTR | 20.0% |
| !!! | TAAGAATCAGTTTGATTTAA+TGG | + | tig0027703:46068-46087 | None:intergenic | 20.0% |
| ! | TAAAATTTCGTATGGAGTAA+TGG | + | tig0027703:39193-39212 | None:intergenic | 25.0% |
| ! | TGGGAAAATAAAATTTCGTA+TGG | + | tig0027703:39201-39220 | None:intergenic | 25.0% |
| !!! | ATATTGGTGTTAAGAAAGTT+CGG | + | tig0027703:39248-39267 | None:intergenic | 25.0% |
| !!! | ATCGTTGAAGGTATTTATAT+TGG | + | tig0027703:39264-39283 | None:intergenic | 25.0% |
| !! | AATCTGAGAAATTGTTGTTA+TGG | + | tig0027703:39292-39311 | None:intergenic | 25.0% |
| !! | CAAACACATGATTTTCAAAT+CGG | + | tig0027703:39500-39519 | None:intergenic | 25.0% |
| !!! | GTTATTTTTTCACATTGCTT+AGG | - | tig0027703:39672-39691 | Msa1435440:intron | 25.0% |
| !!! | TTTTAATAGTGATTAGCTTG+TGG | - | tig0027703:39786-39805 | Msa1435440:intron | 25.0% |
| ! | TATTGCCTAAGAATAAGAAA+TGG | - | tig0027703:39974-39993 | Msa1435440:intron | 25.0% |
| !!! | CTGATTTTTCACATTGATTA+GGG | + | tig0027703:40139-40158 | None:intergenic | 25.0% |
| !!! | ACTGATTTTTCACATTGATT+AGG | + | tig0027703:40140-40159 | None:intergenic | 25.0% |
| ! | TGTAGATTTAATATGATAGG+CGG | - | tig0027703:40485-40504 | Msa1435440:intron | 25.0% |
| ! | AAAAGAAGGGAAAATGTATT+TGG | + | tig0027703:40527-40546 | None:intergenic | 25.0% |
| !! | TACATTTTCCCTTCTTTTAT+TGG | - | tig0027703:40529-40548 | Msa1435440:intron | 25.0% |
| !! | TTTTGCTACCAATAAAAGAA+GGG | + | tig0027703:40540-40559 | None:intergenic | 25.0% |
| ! | AAAAGACAGGAATATGTATT+TGG | + | tig0027703:40619-40638 | None:intergenic | 25.0% |
| !! | CTTTTGATACTAAAAAAGAC+AGG | + | tig0027703:40632-40651 | None:intergenic | 25.0% |
| ! | ATCTGCAAATAAAGAAATAC+GGG | + | tig0027703:40850-40869 | None:intergenic | 25.0% |
| !!! | GTTTCTTTTGAAAATCTGAT+TGG | - | tig0027703:40988-41007 | Msa1435440:intron | 25.0% |
| !!! | ATTCAGTATTGATTTCAACT+TGG | - | tig0027703:41453-41472 | Msa1435440:intron | 25.0% |
| ! | ATTTGATTGTAGGATACTAA+CGG | - | tig0027703:41490-41509 | Msa1435440:intron | 25.0% |
| !!! | CAACTGTAGGTTTTTTATTT+AGG | + | tig0027703:41592-41611 | None:intergenic | 25.0% |
| ! | CATAAATAGTCAAATGCATT+AGG | + | tig0027703:41684-41703 | None:intergenic | 25.0% |
| ! | ACAAGATATTCAACTGATAT+AGG | - | tig0027703:41824-41843 | Msa1435440:CDS | 25.0% |
| ! | ATTCAACTGATATAGGTATT+CGG | - | tig0027703:41831-41850 | Msa1435440:CDS | 25.0% |
| ! | TAAATACATTCGCTTTCAAA+GGG | + | tig0027703:42109-42128 | None:intergenic | 25.0% |
| ! | ATAAATACATTCGCTTTCAA+AGG | + | tig0027703:42110-42129 | None:intergenic | 25.0% |
| ! | TTTATTGTTGAAGTTGTTTG+TGG | - | tig0027703:42156-42175 | Msa1435440:CDS | 25.0% |
| !!! | TCTAATAATGATAATGGTAC+AGG | - | tig0027703:42217-42236 | Msa1435440:intron | 25.0% |
| ! | ATGTATTTATGCTAGGTTAT+TGG | - | tig0027703:42516-42535 | Msa1435440:intron | 25.0% |
| ! | TGTATTTATGCTAGGTTATT+GGG | - | tig0027703:42517-42536 | Msa1435440:intron | 25.0% |
| ! | ATCCAGAATATGATTAAAGA+AGG | - | tig0027703:42663-42682 | Msa1435440:intron | 25.0% |
| ! | TTCCTTCTTTAATCATATTC+TGG | + | tig0027703:42668-42687 | None:intergenic | 25.0% |
| ! | TCAAAATATAGGACAAATGT+TGG | + | tig0027703:42934-42953 | None:intergenic | 25.0% |
| ! | ATGTATTGCATAATAGTGTA+GGG | + | tig0027703:43011-43030 | None:intergenic | 25.0% |
| ! | TATGTATTGCATAATAGTGT+AGG | + | tig0027703:43012-43031 | None:intergenic | 25.0% |
| !!! | TATTAAGCACTGAAAACATA+AGG | + | tig0027703:43056-43075 | None:intergenic | 25.0% |
| ! | ATACTGGATATCAATGATAA+AGG | - | tig0027703:43073-43092 | Msa1435440:intron | 25.0% |
| ! | TACTGGATATCAATGATAAA+GGG | - | tig0027703:43074-43093 | Msa1435440:intron | 25.0% |
| ! | GCATCATAATAATTAATCAC+AGG | + | tig0027703:43164-43183 | None:intergenic | 25.0% |
| !!! | TGATTTACCTTCTCATTTTT+TGG | + | tig0027703:43348-43367 | None:intergenic | 25.0% |
| ! | CCAAATATAAAACTAATTGC+CGG | - | tig0027703:43827-43846 | Msa1435440:intron | 25.0% |
| !!! | GTTTACTTTTTTAGCATCAA+TGG | - | tig0027703:44063-44082 | Msa1435440:intron | 25.0% |
| ! | CTAGTTAAGATGATTATCAA+AGG | + | tig0027703:44392-44411 | None:intergenic | 25.0% |
| !! | TTGATAATCATCTTAACTAG+TGG | - | tig0027703:44392-44411 | Msa1435440:intron | 25.0% |
| ! | TGATAATCATCTTAACTAGT+GGG | - | tig0027703:44393-44412 | Msa1435440:intron | 25.0% |
| ! | GACAAAAAAATATTACTGAG+TGG | - | tig0027703:44415-44434 | Msa1435440:intron | 25.0% |
| !!! | TACTTTTAGAAGTAGAAATC+TGG | + | tig0027703:44571-44590 | None:intergenic | 25.0% |
| !! | AGTAAAGCATAGATTCTTTT+TGG | - | tig0027703:44587-44606 | Msa1435440:intron | 25.0% |
| !! | GTAAAGCATAGATTCTTTTT+GGG | - | tig0027703:44588-44607 | Msa1435440:intron | 25.0% |
| !! | TAAAGCATAGATTCTTTTTG+GGG | - | tig0027703:44589-44608 | Msa1435440:intron | 25.0% |
| !!! | TCCAATTTGTTACATAAGTT+TGG | - | tig0027703:44782-44801 | Msa1435440:intron | 25.0% |
| ! | ACCAAACTTATGTAACAAAT+TGG | + | tig0027703:44786-44805 | None:intergenic | 25.0% |
| !!! | TTATTTTACAAACCTAGTAG+TGG | + | tig0027703:44852-44871 | None:intergenic | 25.0% |
| ! | TTTATTATCTAGTGATGTGA+TGG | - | tig0027703:44895-44914 | Msa1435440:intron | 25.0% |
| ! | GTACCAAAAAGCTTATTATA+TGG | - | tig0027703:44951-44970 | Msa1435440:intron | 25.0% |
| ! | AAAGTTAGAAGCAAATGAAT+AGG | - | tig0027703:45484-45503 | Msa1435440:intron | 25.0% |
| ! | TAATGTGACCTGAAAAAAAA+TGG | + | tig0027703:45815-45834 | None:intergenic | 25.0% |
| ! | ATATCTAGCAACAAAATATG+AGG | + | tig0027703:45859-45878 | None:intergenic | 25.0% |
| !! | TTGTTTGAGTTATTTAAGCA+CGG | - | tig0027703:45964-45983 | Msa1435440:five_prime_UTR | 25.0% |
| !!! | ATAGTAACGGCTTTATTTTC+GGG | + | tig0027703:39147-39166 | None:intergenic | 30.0% |
| !!! | GATAGTAACGGCTTTATTTT+CGG | + | tig0027703:39148-39167 | None:intergenic | 30.0% |
| !!! | GAAAGTTCGGTTTTTTTAGT+CGG | + | tig0027703:39235-39254 | None:intergenic | 30.0% |
| ! | GAGAAATTGTTGTTATGGTT+AGG | + | tig0027703:39287-39306 | None:intergenic | 30.0% |
| AGATCTAACTGCAAACAAAA+CGG | + | tig0027703:39394-39413 | None:intergenic | 30.0% | |
| GTAACAGAGAAAAAAAAGCA+TGG | + | tig0027703:39436-39455 | None:intergenic | 30.0% | |
| !! | TTTTCAACATTGATTAGGAG+TGG | - | tig0027703:39563-39582 | Msa1435440:intron | 30.0% |
| AATTTCTCATTCTTCATACG+CGG | + | tig0027703:39756-39775 | None:intergenic | 30.0% | |
| ! | TTTTAACATAGATTAGGGAG+TGG | - | tig0027703:39901-39920 | Msa1435440:intron | 30.0% |
| !!! | GTGATTTTTTGAAATCCACA+TGG | - | tig0027703:39947-39966 | Msa1435440:intron | 30.0% |
| CAGTTCCATTTCTTATTCTT+AGG | + | tig0027703:39982-40001 | None:intergenic | 30.0% | |
| CAGAAATTTCTTAACACACA+TGG | + | tig0027703:40239-40258 | None:intergenic | 30.0% | |
| ! | CTTTTGCTACCAATAAAAGA+AGG | + | tig0027703:40541-40560 | None:intergenic | 30.0% |
| ! | AGTGTAGTTGATATTACTCA+TGG | - | tig0027703:40876-40895 | Msa1435440:intron | 30.0% |
| ! | GTGTAGTTGATATTACTCAT+GGG | - | tig0027703:40877-40896 | Msa1435440:intron | 30.0% |
| ! | TTTTGTTGGACATTCTATCA+TGG | + | tig0027703:41241-41260 | None:intergenic | 30.0% |
| ATTGACACAATCTCACTAAT+AGG | + | tig0027703:41360-41379 | None:intergenic | 30.0% | |
| ATTCAAAGGTAAGATGACTA+TGG | + | tig0027703:41645-41664 | None:intergenic | 30.0% | |
| TTTACTAACAGCTCATTCAA+AGG | + | tig0027703:41659-41678 | None:intergenic | 30.0% | |
| AGTAAGATTAAAACAGCTTG+TGG | - | tig0027703:41905-41924 | Msa1435440:intron | 30.0% | |
| GTAAGATTAAAACAGCTTGT+GGG | - | tig0027703:41906-41925 | Msa1435440:intron | 30.0% | |
| !!! | TGTGTGTGTTTTGTTTTGAA+AGG | + | tig0027703:41956-41975 | None:intergenic | 30.0% |
| ATTTCAACTATGGATGCATT+TGG | + | tig0027703:42016-42035 | None:intergenic | 30.0% | |
| TAAGTTAAGTTTGCAATAGC+TGG | + | tig0027703:42044-42063 | None:intergenic | 30.0% | |
| GCTATTGCAAACTTAACTTA+AGG | - | tig0027703:42044-42063 | Msa1435440:intron | 30.0% | |
| !! | AATAATGATAATGGTACAGG+TGG | - | tig0027703:42220-42239 | Msa1435440:intron | 30.0% |
| ! | CAAATGTTGTCGAACATTTT+GGG | - | tig0027703:42272-42291 | Msa1435440:intron | 30.0% |
| CTATAAACAATCAGTGAAAC+AGG | + | tig0027703:42397-42416 | None:intergenic | 30.0% | |
| !! | TAGTAAATGGCTAGCTTTAT+AGG | - | tig0027703:42437-42456 | Msa1435440:CDS | 30.0% |
| ! | TCATTGTGCTGTTAAAAATC+AGG | + | tig0027703:42644-42663 | None:intergenic | 30.0% |
| GATGCATTTAGGAAATTAGA+AGG | + | tig0027703:42887-42906 | None:intergenic | 30.0% | |
| CTAATTTCCTAAATGCATCA+TGG | - | tig0027703:42888-42907 | Msa1435440:CDS | 30.0% | |
| ! | ATGTTTTCAGTGCTTAATAC+TGG | - | tig0027703:43057-43076 | Msa1435440:intron | 30.0% |
| ACGACAACATTGAAACAATA+AGG | - | tig0027703:43105-43124 | Msa1435440:intron | 30.0% | |
| ! | GACATTACATTACCTGTTTT+AGG | - | tig0027703:43266-43285 | Msa1435440:intron | 30.0% |
| TTTCAGTCCAAAAAATGAGA+AGG | - | tig0027703:43338-43357 | Msa1435440:intron | 30.0% | |
| ! | GTTTTACAATGCATTATGGA+CGG | - | tig0027703:43645-43664 | Msa1435440:intron | 30.0% |
| ACTGGCATAAACAAATTCAT+TGG | - | tig0027703:43799-43818 | Msa1435440:intron | 30.0% | |
| !!! | CCGGCAATTAGTTTTATATT+TGG | + | tig0027703:43830-43849 | None:intergenic | 30.0% |
| CCAACTGGTATAATTGTATT+CGG | - | tig0027703:43925-43944 | Msa1435440:intron | 30.0% | |
| ACTGTAAGAATTTACAGAAG+CGG | + | tig0027703:44038-44057 | None:intergenic | 30.0% | |
| ! | TTATGACTTGTCTGACAAAT+TGG | - | tig0027703:44104-44123 | Msa1435440:intron | 30.0% |
| CATAGATAAACATCAATTCC+TGG | + | tig0027703:44246-44265 | None:intergenic | 30.0% | |
| CAGGAATTGATGTTTATCTA+TGG | - | tig0027703:44244-44263 | Msa1435440:exon | 30.0% | |
| TGTTTATCTATGGTATTTGC+AGG | - | tig0027703:44254-44273 | Msa1435440:exon | 30.0% | |
| CAACAAAATACAGCAAAATG+CGG | + | tig0027703:44363-44382 | None:intergenic | 30.0% | |
| !! | TTTGCTGTATTTTGTTGTAG+AGG | - | tig0027703:44366-44385 | Msa1435440:intron | 30.0% |
| TGTTAAGTACGAGAGAATTA+TGG | - | tig0027703:44461-44480 | Msa1435440:intron | 30.0% | |
| AGATGATATAAACTTCTACG+CGG | + | tig0027703:44526-44545 | None:intergenic | 30.0% | |
| TATCCAGGCATAAATAAGAA+AGG | + | tig0027703:44619-44638 | None:intergenic | 30.0% | |
| ! | TTTTAGCAAAGCTACATCTT+AGG | - | tig0027703:45155-45174 | Msa1435440:intron | 30.0% |
| TTTAGCAAAGCTACATCTTA+GGG | - | tig0027703:45156-45175 | Msa1435440:intron | 30.0% | |
| ! | TACTCCTTCTAAAAAGTAAG+TGG | - | tig0027703:45216-45235 | Msa1435440:intron | 30.0% |
| ! | ACTCCTTCTAAAAAGTAAGT+GGG | - | tig0027703:45217-45236 | Msa1435440:intron | 30.0% |
| ACCTTCTAACAAAAACAAGT+GGG | + | tig0027703:45282-45301 | None:intergenic | 30.0% | |
| TTATAGCAACATACACCTTA+AGG | - | tig0027703:45305-45324 | Msa1435440:intron | 30.0% | |
| TACAATTCATATCAAACTGG+AGG | - | tig0027703:45441-45460 | Msa1435440:intron | 30.0% | |
| TATAAATGAATGAGTCGACA+AGG | + | tig0027703:45934-45953 | None:intergenic | 30.0% | |
| ! | TGTTTGAGTTATTTAAGCAC+GGG | - | tig0027703:45965-45984 | Msa1435440:five_prime_UTR | 30.0% |
| ! | ATCCCAACATTTTCAAATTC+TGG | - | tig0027703:45995-46014 | Msa1435440:five_prime_UTR | 30.0% |
| CTCCAGAATTTGAAAATGTT+GGG | + | tig0027703:46000-46019 | None:intergenic | 30.0% | |
| ACTCCAGAATTTGAAAATGT+TGG | + | tig0027703:46001-46020 | None:intergenic | 30.0% | |
| ! | TATGGAGTAATGGAAGGAAA+GGG | + | tig0027703:39183-39202 | None:intergenic | 35.0% |
| ! | ATTTCGTATGGAGTAATGGA+AGG | + | tig0027703:39189-39208 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTTTTAGTCGGTA+GGG | + | tig0027703:39230-39249 | None:intergenic | 35.0% |
| TGTTGTTGTGTTCGATGAAT+TGG | - | tig0027703:39526-39545 | Msa1435440:intron | 35.0% | |
| !! | ATGTGTTTGATTTGACGTTG+CGG | - | tig0027703:39627-39646 | Msa1435440:intron | 35.0% |
| CATCGAAGAATGAGAGATTT+AGG | - | tig0027703:39650-39669 | Msa1435440:intron | 35.0% | |
| !! | TTTTCACATTGATTAGGGAG+TGG | + | tig0027703:40134-40153 | None:intergenic | 35.0% |
| TAGTGTCTGTGATATTGTTC+TGG | - | tig0027703:40267-40286 | Msa1435440:intron | 35.0% | |
| TGAAGATTTGACTCCTGATT+TGG | - | tig0027703:40299-40318 | Msa1435440:intron | 35.0% | |
| !! | TTGACTCCTGATTTGGTTAA+TGG | - | tig0027703:40306-40325 | Msa1435440:intron | 35.0% |
| GTAGTACCATTAACCAAATC+AGG | + | tig0027703:40315-40334 | None:intergenic | 35.0% | |
| TGTCTGCTTGATCTGTTAAT+TGG | - | tig0027703:40387-40406 | Msa1435440:intron | 35.0% | |
| GATTTAATATGATAGGCGGA+TGG | - | tig0027703:40489-40508 | Msa1435440:intron | 35.0% | |
| ! | TTTATTGGTAGCAAAAGTGC+AGG | - | tig0027703:40544-40563 | Msa1435440:intron | 35.0% |
| ! | TTTGTTCCCTCATTAAGTTG+CGG | - | tig0027703:40704-40723 | Msa1435440:intron | 35.0% |
| TCGCGTAAAATGCTACTATA+CGG | + | tig0027703:40756-40775 | None:intergenic | 35.0% | |
| TGTTATTGAAGCTGCAAACA+AGG | - | tig0027703:40903-40922 | Msa1435440:intron | 35.0% | |
| GAATTATAGAATTTGGGTCC+CGG | - | tig0027703:41047-41066 | Msa1435440:intron | 35.0% | |
| AGTTGAATATCTTGTCGAGA+GGG | + | tig0027703:41819-41838 | None:intergenic | 35.0% | |
| !! | CTAGTTCTATAAGCTCTCAT+GGG | - | tig0027703:41871-41890 | Msa1435440:intron | 35.0% |
| GCTGGTATACATTTCAACTA+TGG | + | tig0027703:42026-42045 | None:intergenic | 35.0% | |
| ACACAATAGAGACAGACAAA+TGG | + | tig0027703:42137-42156 | None:intergenic | 35.0% | |
| TTCGACAACATTTGCACATT+GGG | + | tig0027703:42266-42285 | None:intergenic | 35.0% | |
| ! | GCAAATGTTGTCGAACATTT+TGG | - | tig0027703:42271-42290 | Msa1435440:intron | 35.0% |
| AACAATAAGGAAGCGATTCA+AGG | - | tig0027703:43118-43137 | Msa1435440:intron | 35.0% | |
| !! | TTGTCTTTTCTCAAAAGCAC+AGG | + | tig0027703:43860-43879 | None:intergenic | 35.0% |
| !! | CTACTTTTCTTTGTACCAAC+TGG | - | tig0027703:43910-43929 | Msa1435440:intron | 35.0% |
| CCGAATACAATTATACCAGT+TGG | + | tig0027703:43928-43947 | None:intergenic | 35.0% | |
| ATGTTGATACACACAAGTCT+AGG | + | tig0027703:43951-43970 | None:intergenic | 35.0% | |
| ! | ATTTTGTACCTTCCTAGTGT+TGG | + | tig0027703:43975-43994 | None:intergenic | 35.0% |
| TTGGAACTTCCTTAGAATAC+AGG | - | tig0027703:44123-44142 | Msa1435440:intron | 35.0% | |
| TCAATTCCTGGAAAACATTG+CGG | + | tig0027703:44234-44253 | None:intergenic | 35.0% | |
| AGTACGAGAGAATTATGGTT+AGG | - | tig0027703:44466-44485 | Msa1435440:intron | 35.0% | |
| ATAAACTTCTACGCGGAATT+GGG | + | tig0027703:44519-44538 | None:intergenic | 35.0% | |
| TATAAACTTCTACGCGGAAT+TGG | + | tig0027703:44520-44539 | None:intergenic | 35.0% | |
| ! | GAACCTTTCTTATTTATGCC+TGG | - | tig0027703:44613-44632 | Msa1435440:intron | 35.0% |
| TTTCTTTACAAGCCACTACT+AGG | - | tig0027703:44837-44856 | Msa1435440:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | tig0027703:45128-45147 | Msa1435440:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | + | tig0027703:45365-45384 | None:intergenic | 35.0% | |
| TGTTCTAGCAAATCCTATAG+GGG | + | tig0027703:45257-45276 | None:intergenic | 35.0% | |
| GTGTTCTAGCAAATCCTATA+GGG | + | tig0027703:45258-45277 | None:intergenic | 35.0% | |
| TGTGTTCTAGCAAATCCTAT+AGG | + | tig0027703:45259-45278 | None:intergenic | 35.0% | |
| !!! | ACCCACTTGTTTTTGTTAGA+AGG | - | tig0027703:45278-45297 | Msa1435440:intron | 35.0% |
| CACCTTCTAACAAAAACAAG+TGG | + | tig0027703:45283-45302 | None:intergenic | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | - | tig0027703:45365-45384 | Msa1435440:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | tig0027703:45128-45147 | None:intergenic | 35.0% |
| !!! | TTTTCAGGTCACATTAGTGT+TGG | - | tig0027703:45819-45838 | Msa1435440:five_prime_UTR | 35.0% |
| GGTGCAACAATAGAATATAG+AGG | + | tig0027703:45913-45932 | None:intergenic | 35.0% | |
| ! | GTATGGAGTAATGGAAGGAA+AGG | + | tig0027703:39184-39203 | None:intergenic | 40.0% |
| TTAGTCGGTAGGGGTTAAAT+GGG | + | tig0027703:39220-39239 | None:intergenic | 40.0% | |
| TTTAGTCGGTAGGGGTTAAA+TGG | + | tig0027703:39221-39240 | None:intergenic | 40.0% | |
| !!! | TCGGTTTTTTTAGTCGGTAG+GGG | + | tig0027703:39229-39248 | None:intergenic | 40.0% |
| !!! | GTTCGGTTTTTTTAGTCGGT+AGG | + | tig0027703:39231-39250 | None:intergenic | 40.0% |
| GTTATGGTTAGGATCGTTGA+AGG | + | tig0027703:39276-39295 | None:intergenic | 40.0% | |
| GTGTTTGATGTTGCTGAGTA+CGG | - | tig0027703:39856-39875 | Msa1435440:intron | 40.0% | |
| CTTAGGCAATATCAACCATG+TGG | + | tig0027703:39965-39984 | None:intergenic | 40.0% | |
| CTGCTTGATCTGTTAATTGG+TGG | - | tig0027703:40390-40409 | Msa1435440:intron | 40.0% | |
| CATTTCGTGCTAGCTGAATT+TGG | - | tig0027703:40417-40436 | Msa1435440:intron | 40.0% | |
| ! | AGCTGCAAACAAGGTATTCA+TGG | - | tig0027703:40912-40931 | Msa1435440:intron | 40.0% |
| TGAGCATAGCTCATTTGGAA+GGG | - | tig0027703:41070-41089 | Msa1435440:intron | 40.0% | |
| AAGCATTATCCCACTAATCG+CGG | + | tig0027703:41321-41340 | None:intergenic | 40.0% | |
| GATAATGCTTGGTTGTGTTG+TGG | - | tig0027703:41331-41350 | Msa1435440:intron | 40.0% | |
| CCTAACACAAACACAACTGT+AGG | + | tig0027703:41605-41624 | None:intergenic | 40.0% | |
| CCTACAGTTGTGTTTGTGTT+AGG | - | tig0027703:41602-41621 | Msa1435440:intron | 40.0% | |
| CAGTTGAATATCTTGTCGAG+AGG | + | tig0027703:41820-41839 | None:intergenic | 40.0% | |
| !! | GCTAGTTCTATAAGCTCTCA+TGG | - | tig0027703:41870-41889 | Msa1435440:intron | 40.0% |
| GTTCGACAACATTTGCACAT+TGG | + | tig0027703:42267-42286 | None:intergenic | 40.0% | |
| ! | ATCAAATCTGGCTCCGAAAA+TGG | - | tig0027703:42334-42353 | Msa1435440:intron | 40.0% |
| ! | TCAAATCTGGCTCCGAAAAT+GGG | - | tig0027703:42335-42354 | Msa1435440:intron | 40.0% |
| CAATCAGTGAAACAGGACTA+CGG | + | tig0027703:42390-42409 | None:intergenic | 40.0% | |
| AGGAAAAATTGTTCCTTCCG+AGG | - | tig0027703:42683-42702 | Msa1435440:intron | 40.0% | |
| TTCCTTCCGAGGTAACAATT+AGG | - | tig0027703:42694-42713 | Msa1435440:intron | 40.0% | |
| CAGAAGCCTAATTGTTACCT+CGG | + | tig0027703:42703-42722 | None:intergenic | 40.0% | |
| GGTAGTACATTTATCTGCTC+AGG | + | tig0027703:42866-42885 | None:intergenic | 40.0% | |
| TGCAAAGCCATGATGCATTT+AGG | + | tig0027703:42898-42917 | None:intergenic | 40.0% | |
| CCTCTGGGCAATCAAAATAT+AGG | + | tig0027703:42945-42964 | None:intergenic | 40.0% | |
| !!! | CCTATATTTTGATTGCCCAG+AGG | - | tig0027703:42942-42961 | Msa1435440:intron | 40.0% |
| ATAGTGTAGGGTCTATTACC+TGG | + | tig0027703:42999-43018 | None:intergenic | 40.0% | |
| ! | GAAGCGATTCAAGGTTTTCT+TGG | - | tig0027703:43127-43146 | Msa1435440:intron | 40.0% |
| ! | GTTGTGTTTCTACCATGTCT+TGG | - | tig0027703:43213-43232 | Msa1435440:intron | 40.0% |
| ACAAGAAACTCACCAAGACA+TGG | + | tig0027703:43228-43247 | None:intergenic | 40.0% | |
| TTGTTTGCCTCATGTGCTAA+AGG | - | tig0027703:43244-43263 | Msa1435440:intron | 40.0% | |
| GTAATGTCCTTTAGCACATG+AGG | + | tig0027703:43254-43273 | None:intergenic | 40.0% | |
| TTGCAGCATCAACCTAAAAC+AGG | + | tig0027703:43281-43300 | None:intergenic | 40.0% | |
| !!! | TGTTTTAGGTTGATGCTGCA+AGG | - | tig0027703:43280-43299 | Msa1435440:intron | 40.0% |
| !! | TGTTGAGGAGGTATTTGAGT+CGG | - | tig0027703:43305-43324 | Msa1435440:intron | 40.0% |
| TGTATCAACATGCCAACACT+AGG | - | tig0027703:43960-43979 | Msa1435440:intron | 40.0% | |
| ! | TTCAAACCGCAATGTTTTCC+AGG | - | tig0027703:44225-44244 | Msa1435440:intron | 40.0% |
| AATATCCAGCACGCAATCAA+GGG | + | tig0027703:44296-44315 | None:intergenic | 40.0% | |
| AAATATCCAGCACGCAATCA+AGG | + | tig0027703:44297-44316 | None:intergenic | 40.0% | |
| TTGCGTGCTGGATATTTAAG+AGG | - | tig0027703:44300-44319 | Msa1435440:intron | 40.0% | |
| ACGAGAGAATTATGGTTAGG+AGG | - | tig0027703:44469-44488 | Msa1435440:intron | 40.0% | |
| AGAGAATTATGGTTAGGAGG+TGG | - | tig0027703:44472-44491 | Msa1435440:intron | 40.0% | |
| TTGAACGTGTCATCTTATCC+AGG | + | tig0027703:44634-44653 | None:intergenic | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | tig0027703:45127-45146 | Msa1435440:intron | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | + | tig0027703:45364-45383 | None:intergenic | 40.0% | |
| !!! | CCACCCACTTACTTTTTAGA+AGG | + | tig0027703:45223-45242 | None:intergenic | 40.0% |
| ! | CCTTCTAAAAAGTAAGTGGG+TGG | - | tig0027703:45220-45239 | Msa1435440:intron | 40.0% |
| ! | AAATCCTATAGGGGTTTGCT+AGG | + | tig0027703:45248-45267 | None:intergenic | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | - | tig0027703:45364-45383 | Msa1435440:intron | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | tig0027703:45127-45146 | None:intergenic | 40.0% |
| ! | GGAGGTGATGTTGAAACTTT+TGG | - | tig0027703:45459-45478 | Msa1435440:intron | 40.0% |
| AATATAGAGGCAACAACCTC+AGG | + | tig0027703:45900-45919 | None:intergenic | 40.0% | |
| AGGTGGTTGCGTGATAGTAA+CGG | + | tig0027703:39160-39179 | None:intergenic | 45.0% | |
| ! | GAAAGCGCGAAAACGTGAAT+TGG | + | tig0027703:39372-39391 | None:intergenic | 45.0% |
| TTTGATGTTGCTGAGTACGG+AGG | - | tig0027703:39859-39878 | Msa1435440:intron | 45.0% | |
| GTTAATGGTACTACCTTGCG+TGG | - | tig0027703:40321-40340 | Msa1435440:intron | 45.0% | |
| ! | TCCCTCATTAAGTTGCGGTT+TGG | - | tig0027703:40709-40728 | Msa1435440:intron | 45.0% |
| GCCAAACCGCAACTTAATGA+GGG | + | tig0027703:40713-40732 | None:intergenic | 45.0% | |
| TGCCAAACCGCAACTTAATG+AGG | + | tig0027703:40714-40733 | None:intergenic | 45.0% | |
| ! | TGCGGTTTGGCATTAGTGAA+AGG | - | tig0027703:40722-40741 | Msa1435440:intron | 45.0% |
| TCCAAATGAGCTATGCTCAC+CGG | + | tig0027703:41069-41088 | None:intergenic | 45.0% | |
| GTGAGCATAGCTCATTTGGA+AGG | - | tig0027703:41069-41088 | Msa1435440:intron | 45.0% | |
| TTTGCGGTCAAATAGCCTAG+TGG | + | tig0027703:41168-41187 | None:intergenic | 45.0% | |
| GCGATTAGTGGGATAATGCT+TGG | - | tig0027703:41320-41339 | Msa1435440:intron | 45.0% | |
| ! | AGCTCTCATGGGAAGCTTTT+TGG | - | tig0027703:41882-41901 | Msa1435440:intron | 45.0% |
| !! | TGATAATGGTACAGGTGGTC+CGG | - | tig0027703:42225-42244 | Msa1435440:intron | 45.0% |
| ! | ATTTGATTTCCGCTCGCAGA+AGG | + | tig0027703:42321-42340 | None:intergenic | 45.0% |
| GGACTACGGATCTATCACTA+AGG | + | tig0027703:42376-42395 | None:intergenic | 45.0% | |
| CAATGCTCAGAAGTTGACGT+TGG | + | tig0027703:42557-42576 | None:intergenic | 45.0% | |
| CAGCTTAAACTCGATGCAGA+TGG | + | tig0027703:42591-42610 | None:intergenic | 45.0% | |
| AGCCTAATTGTTACCTCGGA+AGG | + | tig0027703:42699-42718 | None:intergenic | 45.0% | |
| CAACAAGCAATGCAAGACAG+TGG | - | tig0027703:42723-42742 | Msa1435440:intron | 45.0% | |
| ! | TGATGGTTTTCCTCGCAATG+AGG | - | tig0027703:42764-42783 | Msa1435440:intron | 45.0% |
| TGATTGCCCAGAGGAAGAAA+TGG | - | tig0027703:42951-42970 | Msa1435440:intron | 45.0% | |
| GTCTCTCCATTTCTTCCTCT+GGG | + | tig0027703:42960-42979 | None:intergenic | 45.0% | |
| TGGAGAGACGACTTCTTAGT+AGG | - | tig0027703:42971-42990 | Msa1435440:intron | 45.0% | |
| ACGACTTCTTAGTAGGAACC+AGG | - | tig0027703:42978-42997 | Msa1435440:intron | 45.0% | |
| TGCAAAGGGAAAAGTTCGCA+AGG | - | tig0027703:43181-43200 | Msa1435440:intron | 45.0% | |
| GACTCAAATACCTCCTCAAC+AGG | + | tig0027703:43306-43325 | None:intergenic | 45.0% | |
| TCAACATGCCAACACTAGGA+AGG | - | tig0027703:43964-43983 | Msa1435440:intron | 45.0% | |
| TGTGCTTGGCCTGTATTCTA+AGG | + | tig0027703:44135-44154 | None:intergenic | 45.0% | |
| ! | AAAGAAAGGCACGTGACTGA+TGG | - | tig0027703:44738-44757 | Msa1435440:intron | 45.0% |
| AGTGTGTAAGTGCCCTTTGT+GGG | - | tig0027703:46018-46037 | Msa1435440:five_prime_UTR | 45.0% | |
| GTCCACTACAAACCCACAAA+GGG | + | tig0027703:46033-46052 | None:intergenic | 45.0% | |
| !! | AAAAAAAGAATTATATAATT+TGG | - | tig0027703:41188-41207 | Msa1435440:intron | 5.0% |
| !!! | TTTAAAAAAATATTTTTTGT+TGG | + | tig0027703:41255-41274 | None:intergenic | 5.0% |
| !!! | TTTTAAAGAATTAAATAATA+TGG | - | tig0027703:41268-41287 | Msa1435440:intron | 5.0% |
| !! | ATATATATATATATATATAC+AGG | - | tig0027703:45092-45111 | Msa1435440:intron | 5.0% |
| !! | TATATATATATATATATACA+GGG | - | tig0027703:45093-45112 | Msa1435440:intron | 5.0% |
| !! | TATATATATATATATATATG+GGG | + | tig0027703:45405-45424 | None:intergenic | 5.0% |
| ! | GTAATGGAAGGAAAGGGAGG+TGG | + | tig0027703:39177-39196 | None:intergenic | 50.0% |
| ! | GGAGTAATGGAAGGAAAGGG+AGG | + | tig0027703:39180-39199 | None:intergenic | 50.0% |
| TCTCTCCTCTTTCGCGCAAA+AGG | - | tig0027703:39322-39341 | Msa1435440:intron | 50.0% | |
| ! | CGTTACCTTTTGCGCGAAAG+AGG | + | tig0027703:39330-39349 | None:intergenic | 50.0% |
| TTTCGTGCGTGCGAAGAATG+CGG | - | tig0027703:40078-40097 | Msa1435440:intron | 50.0% | |
| GTACTACCTTGCGTGGCATT+TGG | - | tig0027703:40328-40347 | Msa1435440:intron | 50.0% | |
| CTTTCACCAAATGCCACGCA+AGG | + | tig0027703:40337-40356 | None:intergenic | 50.0% | |
| CCAAATGAGCTATGCTCACC+GGG | + | tig0027703:41068-41087 | None:intergenic | 50.0% | |
| GCATTGCAGTATGCAGGTGT+CGG | - | tig0027703:41092-41111 | Msa1435440:intron | 50.0% | |
| CATTGCAGTATGCAGGTGTC+GGG | - | tig0027703:41093-41112 | Msa1435440:intron | 50.0% | |
| ! | ATTGCAGTATGCAGGTGTCG+GGG | - | tig0027703:41094-41113 | Msa1435440:intron | 50.0% |
| AGCTGAATGAGCGAGGAATC+CGG | + | tig0027703:41127-41146 | None:intergenic | 50.0% | |
| CCTCGCTCATTCAGCTTAAG+CGG | - | tig0027703:41131-41150 | Msa1435440:intron | 50.0% | |
| !! | GCGGTGAATTTCTAGCCACT+AGG | - | tig0027703:41150-41169 | Msa1435440:intron | 50.0% |
| GCGGTCAGGTCAGTACTAAT+AGG | + | tig0027703:41302-41321 | None:intergenic | 50.0% | |
| TTATCCCACTAATCGCGGTC+AGG | + | tig0027703:41316-41335 | None:intergenic | 50.0% | |
| ! | GATAATGGTACAGGTGGTCC+GGG | - | tig0027703:42226-42245 | Msa1435440:intron | 50.0% |
| CTGCGAGCGGAAATCAAATC+TGG | - | tig0027703:42322-42341 | Msa1435440:intron | 50.0% | |
| CTCAGAAGTTGACGTTGGTC+AGG | + | tig0027703:42552-42571 | None:intergenic | 50.0% | |
| CCACTCTCTCAAATGCTGCA+CGG | + | tig0027703:42794-42813 | None:intergenic | 50.0% | |
| ! | TGCATCATGGCTTTGCAGAC+TGG | - | tig0027703:42901-42920 | Msa1435440:intron | 50.0% |
| CGTCTCTCCATTTCTTCCTC+TGG | + | tig0027703:42961-42980 | None:intergenic | 50.0% | |
| ! | CAAAAGCACAGGTTGTGAGC+CGG | + | tig0027703:43849-43868 | None:intergenic | 50.0% |
| ATGGTTAGGAGGTGGAGCAA+TGG | - | tig0027703:44480-44499 | Msa1435440:intron | 50.0% | |
| TGGTTAGGAGGTGGAGCAAT+GGG | - | tig0027703:44481-44500 | Msa1435440:intron | 50.0% | |
| GGATCCTAGCAAACCCCTAT+AGG | - | tig0027703:45241-45260 | Msa1435440:intron | 50.0% | |
| GAGTGTGTAAGTGCCCTTTG+TGG | - | tig0027703:46017-46036 | Msa1435440:five_prime_UTR | 50.0% | |
| TGCCCTTTGTGGGTTTGTAG+TGG | - | tig0027703:46028-46047 | Msa1435440:five_prime_UTR | 50.0% | |
| GGTCCACTACAAACCCACAA+AGG | + | tig0027703:46034-46053 | None:intergenic | 50.0% | |
| CCCGGTGAGCATAGCTCATT+TGG | - | tig0027703:41065-41084 | Msa1435440:intron | 55.0% | |
| !! | GGAAGGGCATTGCAGTATGC+AGG | - | tig0027703:41086-41105 | Msa1435440:intron | 55.0% |
| GCTGAATGAGCGAGGAATCC+GGG | + | tig0027703:41126-41145 | None:intergenic | 55.0% | |
| CCGCTTAAGCTGAATGAGCG+AGG | + | tig0027703:41134-41153 | None:intergenic | 55.0% | |
| ACTGACCTGACCGCGATTAG+TGG | - | tig0027703:41308-41327 | Msa1435440:intron | 55.0% | |
| CTGACCTGACCGCGATTAGT+GGG | - | tig0027703:41309-41328 | Msa1435440:intron | 55.0% | |
| ! | TGGGTACCTTTTCCACTGCC+CGG | + | tig0027703:42247-42266 | None:intergenic | 55.0% |
| GGGTTTACTCACCTCAGTGC+TGG | - | tig0027703:42292-42311 | Msa1435440:intron | 55.0% | |
| ! | GCACGGTTTTCCTCATTGCG+AGG | + | tig0027703:42777-42796 | None:intergenic | 55.0% |
| CCGTGCAGCATTTGAGAGAG+TGG | - | tig0027703:42791-42810 | Msa1435440:intron | 55.0% | |
| TGATGCTGCAAGGCCTGTTG+AGG | - | tig0027703:43290-43309 | Msa1435440:intron | 55.0% | |
| TGTTGCCCTTGATTGCGTGC+TGG | - | tig0027703:44288-44307 | Msa1435440:intron | 55.0% | |
| GCAGAAGGTCACCAGCACTG+AGG | + | tig0027703:42306-42325 | None:intergenic | 60.0% | |
| TGCTGGTGACCTTCTGCGAG+CGG | - | tig0027703:42309-42328 | Msa1435440:intron | 60.0% | |
| TGCTGCAAGGCCTGTTGAGG+AGG | - | tig0027703:43293-43312 | Msa1435440:intron | 60.0% | |
| !! | CAGGTGTCGGGGTTCGAACC+CGG | - | tig0027703:41105-41124 | Msa1435440:intron | 65.0% |
| GGTGGTCCGGGCAGTGGAAA+AGG | - | tig0027703:42238-42257 | Msa1435440:intron | 65.0% | |
| GGTACAGGTGGTCCGGGCAG+TGG | - | tig0027703:42232-42251 | Msa1435440:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027703 | gene | 39051 | 46100 | 39051 | ID=Msa1435440;Name=Msa1435440 |
| tig0027703 | mRNA | 39051 | 46100 | 39051 | ID=Msa1435440-mRNA-1;Parent=Msa1435440;Name=Msa1435440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=320|1|1|1|0.77|0.7|10|312|208 |
| tig0027703 | exon | 39051 | 39325 | 39051 | ID=Msa1435440-mRNA-1:exon:9688;Parent=Msa1435440-mRNA-1 |
| tig0027703 | exon | 40830 | 40875 | 40830 | ID=Msa1435440-mRNA-1:exon:9687;Parent=Msa1435440-mRNA-1 |
| tig0027703 | exon | 41792 | 41863 | 41792 | ID=Msa1435440-mRNA-1:exon:9686;Parent=Msa1435440-mRNA-1 |
| tig0027703 | exon | 41949 | 42056 | 41949 | ID=Msa1435440-mRNA-1:exon:9685;Parent=Msa1435440-mRNA-1 |
| tig0027703 | exon | 42152 | 42232 | 42152 | ID=Msa1435440-mRNA-1:exon:9684;Parent=Msa1435440-mRNA-1 |
| tig0027703 | exon | 42339 | 42495 | 42339 | ID=Msa1435440-mRNA-1:exon:9683;Parent=Msa1435440-mRNA-1 |
| tig0027703 | exon | 42795 | 42912 | 42795 | ID=Msa1435440-mRNA-1:exon:9682;Parent=Msa1435440-mRNA-1 |
| tig0027703 | exon | 43528 | 43579 | 43528 | ID=Msa1435440-mRNA-1:exon:9681;Parent=Msa1435440-mRNA-1 |
| tig0027703 | exon | 44227 | 44283 | 44227 | ID=Msa1435440-mRNA-1:exon:9680;Parent=Msa1435440-mRNA-1 |
| tig0027703 | exon | 45808 | 46100 | 45808 | ID=Msa1435440-mRNA-1:exon:9679;Parent=Msa1435440-mRNA-1 |
| tig0027703 | five_prime_UTR | 45808 | 46100 | 45808 | ID=Msa1435440-mRNA-1:five_prime_utr;Parent=Msa1435440-mRNA-1 |
| tig0027703 | five_prime_UTR | 44257 | 44283 | 44257 | ID=Msa1435440-mRNA-1:five_prime_utr;Parent=Msa1435440-mRNA-1 |
| tig0027703 | CDS | 44227 | 44256 | 44227 | ID=Msa1435440-mRNA-1:cds;Parent=Msa1435440-mRNA-1 |
| tig0027703 | CDS | 43528 | 43579 | 43528 | ID=Msa1435440-mRNA-1:cds;Parent=Msa1435440-mRNA-1 |
| tig0027703 | CDS | 42795 | 42912 | 42795 | ID=Msa1435440-mRNA-1:cds;Parent=Msa1435440-mRNA-1 |
| tig0027703 | CDS | 42339 | 42495 | 42339 | ID=Msa1435440-mRNA-1:cds;Parent=Msa1435440-mRNA-1 |
| tig0027703 | CDS | 42152 | 42232 | 42152 | ID=Msa1435440-mRNA-1:cds;Parent=Msa1435440-mRNA-1 |
| tig0027703 | CDS | 41949 | 42056 | 41949 | ID=Msa1435440-mRNA-1:cds;Parent=Msa1435440-mRNA-1 |
| tig0027703 | CDS | 41792 | 41863 | 41792 | ID=Msa1435440-mRNA-1:cds;Parent=Msa1435440-mRNA-1 |
| tig0027703 | CDS | 40867 | 40875 | 40867 | ID=Msa1435440-mRNA-1:cds;Parent=Msa1435440-mRNA-1 |
| tig0027703 | three_prime_UTR | 40830 | 40866 | 40830 | ID=Msa1435440-mRNA-1:three_prime_utr;Parent=Msa1435440-mRNA-1 |
| tig0027703 | three_prime_UTR | 39051 | 39325 | 39051 | ID=Msa1435440-mRNA-1:three_prime_utr;Parent=Msa1435440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
