Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229620 | XP_003626830.1 | 96.635 | 208 | 7 | 0 | 1 | 208 | 1 | 208 | 3.31e-145 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229620 | sp|O04905|KCY3_ARATH | 80.288 | 208 | 34 | 2 | 1 | 208 | 1 | 201 | 1.21e-121 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0633570 | Msa1229620 | 0.803657 | 3.139925e-49 | -8.615850e-47 |
| Msa0656810 | Msa1229620 | 0.806318 | 8.718375e-50 | -8.615850e-47 |
| Msa0705000 | Msa1229620 | 0.802559 | 5.297710e-49 | -8.615850e-47 |
| Msa0127850 | Msa1229620 | 0.804711 | 1.894573e-49 | -8.615850e-47 |
| Msa0167400 | Msa1229620 | 0.802243 | 6.154775e-49 | -8.615850e-47 |
| Msa1229620 | Msa1271780 | 0.952414 | 2.550955e-110 | -8.615850e-47 |
| Msa1229620 | Msa1310230 | 0.997502 | 1.087550e-243 | -8.615850e-47 |
| Msa1229620 | Msa1393430 | 0.928792 | 1.749154e-92 | -8.615850e-47 |
| Msa1229620 | Msa1435440 | 0.960073 | 3.799820e-118 | -8.615850e-47 |
| Msa0968440 | Msa1229620 | 0.810773 | 9.757158e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229620 | MtrunA17_Chr8g0337051 | 96.635 | 208 | 7 | 0 | 1 | 208 | 1 | 208 | 3.05e-149 | 412 |
| Msa1229620 | MtrunA17_Chr5g0428971 | 60.753 | 186 | 73 | 0 | 22 | 207 | 32 | 217 | 3.22e-81 | 241 |
| Msa1229620 | MtrunA17_Chr4g0018221 | 60.753 | 186 | 73 | 0 | 22 | 207 | 55 | 240 | 7.29e-81 | 241 |
| Msa1229620 | MtrunA17_Chr2g0305051 | 27.570 | 214 | 125 | 4 | 15 | 201 | 66 | 276 | 3.37e-24 | 99.8 |
| Msa1229620 | MtrunA17_Chr4g0017231 | 34.375 | 128 | 81 | 2 | 19 | 144 | 85 | 211 | 9.10e-24 | 95.9 |
| Msa1229620 | MtrunA17_Chr4g0057771 | 26.066 | 211 | 123 | 4 | 24 | 201 | 32 | 242 | 7.19e-20 | 84.3 |
| Msa1229620 | MtrunA17_Chr1g0181801 | 25.888 | 197 | 101 | 4 | 27 | 180 | 117 | 311 | 6.04e-16 | 75.1 |
| Msa1229620 | MtrunA17_Chr7g0263541 | 24.424 | 217 | 122 | 4 | 18 | 193 | 34 | 249 | 1.25e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1229620 | AT5G26667.3 | 80.288 | 208 | 34 | 2 | 1 | 208 | 1 | 201 | 1.23e-122 | 345 |
| Msa1229620 | AT5G26667.2 | 80.288 | 208 | 34 | 2 | 1 | 208 | 1 | 201 | 1.23e-122 | 345 |
| Msa1229620 | AT5G26667.4 | 80.288 | 208 | 34 | 2 | 1 | 208 | 1 | 201 | 1.23e-122 | 345 |
| Msa1229620 | AT5G26667.1 | 81.068 | 206 | 32 | 2 | 1 | 206 | 1 | 199 | 2.83e-122 | 345 |
| Msa1229620 | AT3G60180.1 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 3.34e-108 | 309 |
| Msa1229620 | AT3G60180.2 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 3.34e-108 | 309 |
| Msa1229620 | AT4G25280.1 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.60e-78 | 236 |
| Msa1229620 | AT4G25280.2 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.60e-78 | 236 |
| Msa1229620 | AT3G60961.1 | 68.421 | 133 | 38 | 1 | 73 | 201 | 1 | 133 | 6.93e-66 | 199 |
| Msa1229620 | AT5G35170.2 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 3.88e-27 | 108 |
| Msa1229620 | AT5G35170.1 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 4.45e-27 | 108 |
| Msa1229620 | AT5G47840.1 | 30.144 | 209 | 116 | 4 | 20 | 201 | 63 | 268 | 1.91e-26 | 103 |
| Msa1229620 | AT5G47840.2 | 37.008 | 127 | 77 | 2 | 20 | 144 | 63 | 188 | 5.93e-26 | 101 |
| Msa1229620 | AT5G63400.1 | 27.488 | 211 | 120 | 4 | 24 | 201 | 36 | 246 | 1.61e-20 | 86.7 |
| Msa1229620 | AT5G50370.1 | 27.723 | 202 | 112 | 5 | 23 | 191 | 37 | 237 | 4.73e-18 | 80.1 |
| Msa1229620 | AT2G37250.1 | 25.238 | 210 | 112 | 3 | 27 | 193 | 57 | 264 | 2.68e-16 | 75.9 |
| Msa1229620 | AT2G39270.1 | 27.411 | 197 | 98 | 4 | 27 | 180 | 70 | 264 | 2.62e-15 | 73.2 |
| Msa1229620 | AT5G63400.2 | 31.200 | 125 | 82 | 2 | 24 | 144 | 36 | 160 | 6.80e-14 | 67.8 |
| Msa1229620 | AT5G50370.2 | 27.072 | 181 | 98 | 5 | 23 | 170 | 37 | 216 | 7.52e-14 | 68.2 |
Find 82 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAATCAGTTTGATTTAA+TGG | 0.106693 | 8_2:+5452582 | None:intergenic |
| ATCAAATCTGGCTCCGAAAA+TGG | 0.173136 | 8_2:-5455924 | Msa1229620:CDS |
| TTTAGTCGGTAGGGGTTAAA+TGG | 0.194002 | 8_2:+5458945 | None:intergenic |
| TTCCTTCTTTAATCATATTC+TGG | 0.194476 | 8_2:+5455593 | None:intergenic |
| GCAAATGTTGTCGAACATTT+TGG | 0.209865 | 8_2:-5455987 | Msa1229620:CDS |
| CGTCTCTCCATTTCTTCCTC+TGG | 0.293885 | 8_2:+5455300 | None:intergenic |
| AATGACAAATTTCTTATTGA+TGG | 0.306611 | 8_2:-5455511 | Msa1229620:CDS |
| TTCGACAACATTTGCACATT+GGG | 0.333869 | 8_2:+5455995 | None:intergenic |
| ATCGTTGAAGGTATTTATAT+TGG | 0.359065 | 8_2:+5458902 | None:intergenic |
| ACGACAACATTGAAACAATA+AGG | 0.372468 | 8_2:-5455153 | Msa1229620:CDS |
| CCTACAGTTGTGTTTGTGTT+AGG | 0.377583 | 8_2:-5456657 | Msa1229620:intron |
| CTCCAGAATTTGAAAATGTT+GGG | 0.382498 | 8_2:+5452650 | None:intergenic |
| CCTCTGGGCAATCAAAATAT+AGG | 0.386242 | 8_2:+5455316 | None:intergenic |
| GAGAAATTGTTGTTATGGTT+AGG | 0.392336 | 8_2:+5458879 | None:intergenic |
| GTCTCTCCATTTCTTCCTCT+GGG | 0.403856 | 8_2:+5455301 | None:intergenic |
| CTGCGAGCGGAAATCAAATC+TGG | 0.406089 | 8_2:-5455936 | Msa1229620:CDS |
| AATCTGAGAAATTGTTGTTA+TGG | 0.408867 | 8_2:+5458874 | None:intergenic |
| TGATTGCCCAGAGGAAGAAA+TGG | 0.417731 | 8_2:-5455307 | Msa1229620:CDS |
| GACTCAAATACCTCCTCAAC+AGG | 0.418858 | 8_2:+5454955 | None:intergenic |
| ACTCCAGAATTTGAAAATGT+TGG | 0.420168 | 8_2:+5452649 | None:intergenic |
| ATTTATTTGTAGGATACAAA+TGG | 0.422348 | 8_2:-5456699 | Msa1229620:intron |
| TTAGTCGGTAGGGGTTAAAT+GGG | 0.427969 | 8_2:+5458946 | None:intergenic |
| TGATAATGGTACAGGTGGTC+CGG | 0.428269 | 8_2:-5456033 | Msa1229620:intron |
| TTCCTTCCGAGGTAACAATT+AGG | 0.429145 | 8_2:-5455564 | Msa1229620:CDS |
| TCTCTCCTCTTTCGCGCAAA+AGG | 0.438303 | 8_2:-5458841 | Msa1229620:intron |
| ATTAATTATTATGATGCAAA+GGG | 0.443787 | 8_2:-5455091 | Msa1229620:CDS |
| AACAATAAGGAAGCGATTCA+AGG | 0.444129 | 8_2:-5455140 | Msa1229620:CDS |
| TCAAATCTGGCTCCGAAAAT+GGG | 0.446253 | 8_2:-5455923 | Msa1229620:intron |
| GGGTTTACTCACCTCAGTGC+TGG | 0.448432 | 8_2:-5455966 | Msa1229620:CDS |
| TTGCGTGCTGGATATTTAAG+AGG | 0.450042 | 8_2:-5453960 | Msa1229620:intron |
| GGTACAGGTGGTCCGGGCAG+TGG | 0.454545 | 8_2:-5456026 | Msa1229620:intron |
| AGTGTGTAAGTGCCCTTTGT+GGG | 0.455214 | 8_2:-5452629 | Msa1229620:three_prime_UTR |
| AATATAGAGGCAACAACCTC+AGG | 0.460417 | 8_2:+5452750 | None:intergenic |
| ATATTGGTGTTAAGAAAGTT+CGG | 0.460947 | 8_2:+5458918 | None:intergenic |
| TAAAATTTCGTATGGAGTAA+TGG | 0.466516 | 8_2:+5458973 | None:intergenic |
| TGGAGAGACGACTTCTTAGT+AGG | 0.467613 | 8_2:-5455287 | Msa1229620:CDS |
| GGTGGTCCGGGCAGTGGAAA+AGG | 0.473432 | 8_2:-5456020 | Msa1229620:CDS |
| AAATATCCAGCACGCAATCA+AGG | 0.478107 | 8_2:+5453966 | None:intergenic |
| TCAAAATATAGGACAAATGT+TGG | 0.497184 | 8_2:+5455327 | None:intergenic |
| AGTGTAGTTGCTATTACTCA+TGG | 0.503526 | 8_2:-5457378 | Msa1229620:exon |
| ATCCAGAATATGATTAAAGA+AGG | 0.504467 | 8_2:-5455595 | Msa1229620:CDS |
| TGGGAAAATAAAATTTCGTA+TGG | 0.508074 | 8_2:+5458965 | None:intergenic |
| ATATCTAGCAACAAAATATG+AGG | 0.509211 | 8_2:+5452791 | None:intergenic |
| TGATTCTTATGTTCATTCGA+TGG | 0.509409 | 8_2:-5452568 | None:intergenic |
| GTTATGGTTAGGATCGTTGA+AGG | 0.512352 | 8_2:+5458890 | None:intergenic |
| GCATCATAATAATTAATCAC+AGG | 0.514630 | 8_2:+5455097 | None:intergenic |
| TGCCCTTTGTGGGTTTGTAG+TGG | 0.517614 | 8_2:-5452619 | Msa1229620:three_prime_UTR |
| GGTGCAACAATAGAATATAG+AGG | 0.520858 | 8_2:+5452737 | None:intergenic |
| GATAATGGTACAGGTGGTCC+GGG | 0.533653 | 8_2:-5456032 | Msa1229620:intron |
| AGCCTAATTGTTACCTCGGA+AGG | 0.535061 | 8_2:+5455562 | None:intergenic |
| GAGTGTGTAAGTGCCCTTTG+TGG | 0.535947 | 8_2:-5452630 | Msa1229620:three_prime_UTR |
| GTCCACTACAAACCCACAAA+GGG | 0.537093 | 8_2:+5452617 | None:intergenic |
| GTAATGGAAGGAAAGGGAGG+TGG | 0.538102 | 8_2:+5458989 | None:intergenic |
| GTTCGACAACATTTGCACAT+TGG | 0.539900 | 8_2:+5455994 | None:intergenic |
| GTATGGAGTAATGGAAGGAA+AGG | 0.543753 | 8_2:+5458982 | None:intergenic |
| GATTAATTATTATGATGCAA+AGG | 0.546499 | 8_2:-5455092 | Msa1229620:CDS |
| TTGTTTGAGTTATTTAAGCA+CGG | 0.546632 | 8_2:-5452683 | Msa1229620:three_prime_UTR |
| ATTTGATTTCCGCTCGCAGA+AGG | 0.550406 | 8_2:+5455940 | None:intergenic |
| CAGAAGCCTAATTGTTACCT+CGG | 0.555573 | 8_2:+5455558 | None:intergenic |
| GGAGTAATGGAAGGAAAGGG+AGG | 0.556953 | 8_2:+5458986 | None:intergenic |
| TGTTTGAGTTATTTAAGCAC+GGG | 0.562756 | 8_2:-5452682 | Msa1229620:three_prime_UTR |
| TGTTATTGAAGCTGCAAACA+AGG | 0.570574 | 8_2:-5457351 | Msa1229620:intron |
| CCGTGCAGCATTTGAGAGAG+TGG | 0.571248 | 8_2:-5455467 | Msa1229620:intron |
| TGCTGGTGACCTTCTGCGAG+CGG | 0.575371 | 8_2:-5455949 | Msa1229620:CDS |
| CATCATAATAATTAATCACA+GGG | 0.576231 | 8_2:+5455098 | None:intergenic |
| CCTAACACAAACACAACTGT+AGG | 0.576692 | 8_2:+5456657 | None:intergenic |
| ATTTCGTATGGAGTAATGGA+AGG | 0.578668 | 8_2:+5458977 | None:intergenic |
| TATGGAGTAATGGAAGGAAA+GGG | 0.582559 | 8_2:+5458983 | None:intergenic |
| TGTTGCCCTTGATTGCGTGC+TGG | 0.583464 | 8_2:-5453972 | Msa1229620:three_prime_UTR |
| AATATCCAGCACGCAATCAA+GGG | 0.591954 | 8_2:+5453967 | None:intergenic |
| TGTTGAGGAGGTATTTGAGT+CGG | 0.603618 | 8_2:-5454953 | Msa1229620:CDS |
| AGGTGGTTGCGTGATAGTAA+CGG | 0.605517 | 8_2:+5459006 | None:intergenic |
| TGCTGCAAGGCCTGTTGAGG+AGG | 0.615003 | 8_2:-5454965 | Msa1229620:CDS |
| GGTCCACTACAAACCCACAA+AGG | 0.618270 | 8_2:+5452616 | None:intergenic |
| GTGTAGTTGCTATTACTCAT+GGG | 0.624342 | 8_2:-5457377 | Msa1229620:exon |
| CCACTCTCTCAAATGCTGCA+CGG | 0.625742 | 8_2:+5455467 | None:intergenic |
| TGATGCTGCAAGGCCTGTTG+AGG | 0.626580 | 8_2:-5454968 | Msa1229620:CDS |
| TGCAAAGGGAAAAGTTCGCA+AGG | 0.641623 | 8_2:-5455077 | Msa1229620:intron |
| ACGACTTCTTAGTAGGAACC+AGG | 0.649336 | 8_2:-5455280 | Msa1229620:intron |
| CAACAAGCAATGCAAGACAG+TGG | 0.683184 | 8_2:-5455535 | Msa1229620:CDS |
| TATAAATGAATGAGTCGACA+AGG | 0.689782 | 8_2:+5452716 | None:intergenic |
| GCAGAAGGTCACCAGCACTG+AGG | 0.757069 | 8_2:+5455955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCATTTACATAAAATTA+GGG | + | chr8_2:5454065-5454084 | None:intergenic | 10.0% |
| !! | TAATTCATTTACATAAAATT+AGG | + | chr8_2:5454066-5454085 | None:intergenic | 10.0% |
| !! | TTTACATAAATAATTTATCT+TGG | - | chr8_2:5454234-5454253 | Msa1229620:intron | 10.0% |
| !!! | TATAATTCTTTTTTTTTTTG+CGG | + | chr8_2:5454611-5454630 | None:intergenic | 10.0% |
| !! | TAAAATATGATAAAGTAAAA+GGG | + | chr8_2:5457045-5457064 | None:intergenic | 10.0% |
| !! | ATAAAATATGATAAAGTAAA+AGG | + | chr8_2:5457046-5457065 | None:intergenic | 10.0% |
| !! | TTAAATTTAAATAAAGATAC+TGG | - | chr8_2:5457205-5457224 | Msa1229620:intron | 10.0% |
| !!! | AAAATTTTGAAAATGATATT+GGG | - | chr8_2:5457411-5457430 | Msa1229620:intron | 10.0% |
| !! | AATATAGTAAGTTAATATTA+TGG | - | chr8_2:5458637-5458656 | Msa1229620:intron | 10.0% |
| !!! | TGAATTTTTAACATTGATTA+GGG | - | chr8_2:5453412-5453431 | Msa1229620:intron | 15.0% |
| !! | ATATGTAGATTTAATATGAT+AGG | - | chr8_2:5453887-5453906 | Msa1229620:intron | 15.0% |
| !! | ATTCATTTACATAAAATTAG+GGG | + | chr8_2:5454064-5454083 | None:intergenic | 15.0% |
| !! | TTATGTAAATGAATTATGAT+TGG | - | chr8_2:5454070-5454089 | Msa1229620:intron | 15.0% |
| !! | AATTATTTATGTAAAGAATC+AGG | + | chr8_2:5454229-5454248 | None:intergenic | 15.0% |
| !! | TCTATAGAATTATAGAATTT+GGG | - | chr8_2:5454468-5454487 | Msa1229620:intron | 15.0% |
| !! | AAGAATTAAATAATATGGTT+TGG | - | chr8_2:5454701-5454720 | Msa1229620:intron | 15.0% |
| !! | TGAATTCTATAATTAAACAA+AGG | + | chr8_2:5454839-5454858 | None:intergenic | 15.0% |
| !!! | TCAATTCTTTATTTATTTGT+AGG | - | chr8_2:5454972-5454991 | Msa1229620:CDS | 15.0% |
| !! | TATTGATCTAATAATGATAA+TGG | - | chr8_2:5455634-5455653 | Msa1229620:intron | 15.0% |
| !! | ATTAATTATTATGATGCAAA+GGG | - | chr8_2:5456590-5456609 | Msa1229620:intron | 15.0% |
| !!! | CAAAATTTTGAAAATGATAT+TGG | - | chr8_2:5457410-5457429 | Msa1229620:intron | 15.0% |
| !! | TATGACAAAATAAAATGTAT+GGG | + | chr8_2:5457755-5457774 | None:intergenic | 15.0% |
| !! | ATATGACAAAATAAAATGTA+TGG | + | chr8_2:5457756-5457775 | None:intergenic | 15.0% |
| !!! | TTTTTCCATTTTTTTTTTTC+AGG | - | chr8_2:5458838-5458857 | Msa1229620:intron | 15.0% |
| !! | GATTTAATGGTTAAAAATAT+TGG | + | chr8_2:5459089-5459108 | None:intergenic | 15.0% |
| !!! | TGAAATTTTCAACATTGATT+AGG | - | chr8_2:5453074-5453093 | Msa1229620:intron | 20.0% |
| !!! | GTTATTTTTTCACATTGATT+AGG | - | chr8_2:5453188-5453207 | Msa1229620:intron | 20.0% |
| !!! | CTGAATTTTTAACATTGATT+AGG | - | chr8_2:5453411-5453430 | Msa1229620:intron | 20.0% |
| !!! | TGAATTTTTTGACACTATTT+AGG | - | chr8_2:5453516-5453535 | Msa1229620:intron | 20.0% |
| !!! | GAATTTTTTGACACTATTTA+GGG | - | chr8_2:5453517-5453536 | Msa1229620:intron | 20.0% |
| !! | TATCTGCAAATAAAGAAATA+CGG | + | chr8_2:5454278-5454297 | None:intergenic | 20.0% |
| !!! | AATCAGATTTTCAAAAGAAA+CGG | + | chr8_2:5454416-5454435 | None:intergenic | 20.0% |
| !! | CTCTATAGAATTATAGAATT+TGG | - | chr8_2:5454467-5454486 | Msa1229620:intron | 20.0% |
| !! | TTAATCACTTATTTGATTGT+AGG | - | chr8_2:5454902-5454921 | Msa1229620:intron | 20.0% |
| !! | ATTTATTTGTAGGATACAAA+TGG | - | chr8_2:5454982-5455001 | Msa1229620:intron | 20.0% |
| !!! | ACTGCTTGTTATAAATAAAT+TGG | + | chr8_2:5455156-5455175 | None:intergenic | 20.0% |
| !! | GCTTATTTATGTTTATCTTA+AGG | + | chr8_2:5455411-5455430 | None:intergenic | 20.0% |
| !!! | ATATAATTTGTACCCATTTT+CGG | + | chr8_2:5455773-5455792 | None:intergenic | 20.0% |
| !! | ACTATTTCAAAAGAAGAAAA+GGG | + | chr8_2:5455844-5455863 | None:intergenic | 20.0% |
| !! | TACTATTTCAAAAGAAGAAA+AGG | + | chr8_2:5455845-5455864 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTGAAATAGTAAA+TGG | - | chr8_2:5455847-5455866 | Msa1229620:intron | 20.0% |
| !! | AATTTCTATGTATTTATGCT+AGG | - | chr8_2:5455932-5455951 | Msa1229620:CDS | 20.0% |
| !! | AATGACAAATTTCTTATTGA+TGG | - | chr8_2:5456170-5456189 | Msa1229620:intron | 20.0% |
| !! | CATCATAATAATTAATCACA+GGG | + | chr8_2:5456586-5456605 | None:intergenic | 20.0% |
| !! | GATTAATTATTATGATGCAA+AGG | - | chr8_2:5456589-5456608 | Msa1229620:intron | 20.0% |
| !!! | ATTTTCTCTTTGATAGAAAA+TGG | + | chr8_2:5456833-5456852 | None:intergenic | 20.0% |
| !! | TTTCTATCAAAGAGAAAATT+TGG | - | chr8_2:5456834-5456853 | Msa1229620:intron | 20.0% |
| !! | TTTATTTAAAAACTCATGCA+AGG | + | chr8_2:5456948-5456967 | None:intergenic | 20.0% |
| !! | ATTAAGAACAATATTAACAG+TGG | - | chr8_2:5457119-5457138 | Msa1229620:intron | 20.0% |
| !! | AATTATAATTTCAATGTGCT+TGG | + | chr8_2:5457570-5457589 | None:intergenic | 20.0% |
| !! | ATGACAAAATAAAATGTATG+GGG | + | chr8_2:5457754-5457773 | None:intergenic | 20.0% |
| !!! | TAGATTAGATATTTTGTTGA+TGG | - | chr8_2:5458093-5458112 | Msa1229620:intron | 20.0% |
| !! | TGAAATTGATAAGAAAAGAA+AGG | - | chr8_2:5458144-5458163 | Msa1229620:intron | 20.0% |
| !! | TACCAAAAAGCTTATTATAT+TGG | - | chr8_2:5458372-5458391 | Msa1229620:intron | 20.0% |
| !!! | ATCCAATATAATAAGCTTTT+TGG | + | chr8_2:5458377-5458396 | None:intergenic | 20.0% |
| !! | ATATACAATTCATATCAAAC+TGG | - | chr8_2:5458469-5458488 | Msa1229620:intron | 20.0% |
| !!! | AATTATAGATTTTGTATGCT+CGG | - | chr8_2:5458568-5458587 | Msa1229620:intron | 20.0% |
| !!! | TTAGATTTGTGAAGTATTTT+AGG | - | chr8_2:5458610-5458629 | Msa1229620:intron | 20.0% |
| !! | TCATTTGTTTATTATTGCAT+TGG | - | chr8_2:5458716-5458735 | Msa1229620:intron | 20.0% |
| !!! | ATTATTGCATTGGTTTTTTA+TGG | - | chr8_2:5458726-5458745 | Msa1229620:intron | 20.0% |
| !!! | AAAAATGTATTTTATACCTG+AGG | - | chr8_2:5458915-5458934 | Msa1229620:five_prime_UTR | 20.0% |
| !!! | TAAGAATCAGTTTGATTTAA+TGG | + | chr8_2:5459102-5459121 | None:intergenic | 20.0% |
| ! | TAAAATTTCGTATGGAGTAA+TGG | + | chr8_2:5452711-5452730 | None:intergenic | 25.0% |
| ! | TGGGAAAATAAAATTTCGTA+TGG | + | chr8_2:5452719-5452738 | None:intergenic | 25.0% |
| !!! | ATATTGGTGTTAAGAAAGTT+CGG | + | chr8_2:5452766-5452785 | None:intergenic | 25.0% |
| !!! | ATCGTTGAAGGTATTTATAT+TGG | + | chr8_2:5452782-5452801 | None:intergenic | 25.0% |
| !! | AATCTGAGAAATTGTTGTTA+TGG | + | chr8_2:5452810-5452829 | None:intergenic | 25.0% |
| !!! | AAATTCATGTGTTTGATTTG+AGG | - | chr8_2:5453137-5453156 | Msa1229620:intron | 25.0% |
| !!! | TTTTAACATTGATTAGCTTG+TGG | - | chr8_2:5453302-5453321 | Msa1229620:intron | 25.0% |
| ! | TATTGCCTAAGAATAAGAAA+TGG | - | chr8_2:5453490-5453509 | Msa1229620:intron | 25.0% |
| ! | TGTAGATTTAATATGATAGG+CGG | - | chr8_2:5453890-5453909 | Msa1229620:intron | 25.0% |
| ! | AAAAGAAGGGAAAATGTATT+TGG | + | chr8_2:5453932-5453951 | None:intergenic | 25.0% |
| !! | TACATTTTCCCTTCTTTTAT+TGG | - | chr8_2:5453934-5453953 | Msa1229620:intron | 25.0% |
| !! | TTTTGCTACCAATAAAAGAA+GGG | + | chr8_2:5453945-5453964 | None:intergenic | 25.0% |
| ! | AAAAGACAGGAATATGTATT+TGG | + | chr8_2:5454024-5454043 | None:intergenic | 25.0% |
| !! | CTTTTGATACTAAAAAAGAC+AGG | + | chr8_2:5454037-5454056 | None:intergenic | 25.0% |
| ! | ATCTGCAAATAAAGAAATAC+GGG | + | chr8_2:5454277-5454296 | None:intergenic | 25.0% |
| !!! | GTTTCTTTTGAAAATCTGAT+TGG | - | chr8_2:5454415-5454434 | Msa1229620:intron | 25.0% |
| !!! | ATTCAGTATTGATTTCAACT+TGG | - | chr8_2:5454875-5454894 | Msa1229620:intron | 25.0% |
| ! | ATTTGATTGTAGGATACTAA+CGG | - | chr8_2:5454912-5454931 | Msa1229620:intron | 25.0% |
| !!! | CAACTGTAGGTTTTTTATTT+AGG | + | chr8_2:5455014-5455033 | None:intergenic | 25.0% |
| ! | CATAAATAGTCAAATGCATT+AGG | + | chr8_2:5455106-5455125 | None:intergenic | 25.0% |
| ! | ACAAGATATTCAACTGATAT+AGG | - | chr8_2:5455246-5455265 | Msa1229620:intron | 25.0% |
| ! | ATTCAACTGATATAGGTATT+CGG | - | chr8_2:5455253-5455272 | Msa1229620:intron | 25.0% |
| ! | TAAATACATTCGCTTTCAAA+GGG | + | chr8_2:5455531-5455550 | None:intergenic | 25.0% |
| ! | ATAAATACATTCGCTTTCAA+AGG | + | chr8_2:5455532-5455551 | None:intergenic | 25.0% |
| ! | TTTATTGTTGAAGTTGTTTG+TGG | - | chr8_2:5455578-5455597 | Msa1229620:CDS | 25.0% |
| !!! | TCTAATAATGATAATGGTAC+AGG | - | chr8_2:5455640-5455659 | Msa1229620:intron | 25.0% |
| ! | ATGTATTTATGCTAGGTTAT+TGG | - | chr8_2:5455939-5455958 | Msa1229620:CDS | 25.0% |
| ! | TGTATTTATGCTAGGTTATT+GGG | - | chr8_2:5455940-5455959 | Msa1229620:CDS | 25.0% |
| ! | ATCCAGAATATGATTAAAGA+AGG | - | chr8_2:5456086-5456105 | Msa1229620:intron | 25.0% |
| ! | TTCCTTCTTTAATCATATTC+TGG | + | chr8_2:5456091-5456110 | None:intergenic | 25.0% |
| ! | TCAAAATATAGGACAAATGT+TGG | + | chr8_2:5456357-5456376 | None:intergenic | 25.0% |
| ! | ATGTATTGCATAATAGTGTA+GGG | + | chr8_2:5456434-5456453 | None:intergenic | 25.0% |
| ! | TATGTATTGCATAATAGTGT+AGG | + | chr8_2:5456435-5456454 | None:intergenic | 25.0% |
| !!! | TATTAAGCACTGAAAACATA+AGG | + | chr8_2:5456479-5456498 | None:intergenic | 25.0% |
| ! | ATACTGGATATCAATGATAA+AGG | - | chr8_2:5456496-5456515 | Msa1229620:intron | 25.0% |
| ! | TACTGGATATCAATGATAAA+GGG | - | chr8_2:5456497-5456516 | Msa1229620:intron | 25.0% |
| ! | GCATCATAATAATTAATCAC+AGG | + | chr8_2:5456587-5456606 | None:intergenic | 25.0% |
| !!! | TGATTTACCTTCTCATTTTT+TGG | + | chr8_2:5456771-5456790 | None:intergenic | 25.0% |
| !! | GTTTTACAATGCATTATGAA+CGG | - | chr8_2:5457068-5457087 | Msa1229620:intron | 25.0% |
| ! | CCAAATATAAAACTAATTGC+CGG | - | chr8_2:5457251-5457270 | Msa1229620:intron | 25.0% |
| !!! | GTTTACTTTTTTAGCATCAA+TGG | - | chr8_2:5457484-5457503 | Msa1229620:intron | 25.0% |
| ! | CTAGTTAAGATGATTATCAA+AGG | + | chr8_2:5457813-5457832 | None:intergenic | 25.0% |
| !! | TTGATAATCATCTTAACTAG+TGG | - | chr8_2:5457813-5457832 | Msa1229620:intron | 25.0% |
| ! | TGATAATCATCTTAACTAGT+GGG | - | chr8_2:5457814-5457833 | Msa1229620:intron | 25.0% |
| ! | ACAAAAAAATATTACCGAGT+GGG | - | chr8_2:5457837-5457856 | Msa1229620:intron | 25.0% |
| !!! | TACTTTTAGAAGTAGAAATC+TGG | + | chr8_2:5457991-5458010 | None:intergenic | 25.0% |
| !! | AGTAAAGCATAGATTCTTTT+TGG | - | chr8_2:5458007-5458026 | Msa1229620:intron | 25.0% |
| !! | GTAAAGCATAGATTCTTTTT+GGG | - | chr8_2:5458008-5458027 | Msa1229620:intron | 25.0% |
| !! | TAAAGCATAGATTCTTTTTG+GGG | - | chr8_2:5458009-5458028 | Msa1229620:intron | 25.0% |
| !!! | TCCAATTTGTTACATAAGTT+TGG | - | chr8_2:5458202-5458221 | Msa1229620:intron | 25.0% |
| ! | ACCAAACTTATGTAACAAAT+TGG | + | chr8_2:5458206-5458225 | None:intergenic | 25.0% |
| !!! | TTATTTTACAAACCTAGTAG+TGG | + | chr8_2:5458272-5458291 | None:intergenic | 25.0% |
| ! | TTTATTATCTAGTGATGTGA+TGG | - | chr8_2:5458315-5458334 | Msa1229620:intron | 25.0% |
| ! | AAAGTTAGAAGCAAATGAAT+AGG | - | chr8_2:5458515-5458534 | Msa1229620:intron | 25.0% |
| ! | TGTGACCTGAAAAAAAAAAA+TGG | + | chr8_2:5458846-5458865 | None:intergenic | 25.0% |
| ! | ATATCTAGCAACAAAATATG+AGG | + | chr8_2:5458893-5458912 | None:intergenic | 25.0% |
| !! | TTGTTTGAGTTATTTAAGCA+CGG | - | chr8_2:5458998-5459017 | Msa1229620:five_prime_UTR | 25.0% |
| !!! | ATAGTAACGGCTTTATTTTC+GGG | + | chr8_2:5452665-5452684 | None:intergenic | 30.0% |
| !!! | GATAGTAACGGCTTTATTTT+CGG | + | chr8_2:5452666-5452685 | None:intergenic | 30.0% |
| !!! | GAAAGTTCGGTTTTTTTAGT+CGG | + | chr8_2:5452753-5452772 | None:intergenic | 30.0% |
| ! | GAGAAATTGTTGTTATGGTT+AGG | + | chr8_2:5452805-5452824 | None:intergenic | 30.0% |
| CATAACAGAGAAAAAAAGCA+TGG | + | chr8_2:5452954-5452973 | None:intergenic | 30.0% | |
| !! | TTTTCAACATTGATTAGGAG+TGG | - | chr8_2:5453079-5453098 | Msa1229620:intron | 30.0% |
| !! | TTTTCACATTGATTAGGTAG+TGG | - | chr8_2:5453194-5453213 | Msa1229620:intron | 30.0% |
| AATTTCTCATTCTTCATACG+CGG | + | chr8_2:5453272-5453291 | None:intergenic | 30.0% | |
| !! | TTTTAACATTGATTAGGGAG+TGG | - | chr8_2:5453417-5453436 | Msa1229620:intron | 30.0% |
| !!! | GTGATTTTTTGAAATCCACA+TGG | - | chr8_2:5453463-5453482 | Msa1229620:intron | 30.0% |
| CAGTTCCATTTCTTATTCTT+AGG | + | chr8_2:5453498-5453517 | None:intergenic | 30.0% | |
| TAATGTCTGTGATATTGTTC+TGG | - | chr8_2:5453672-5453691 | Msa1229620:intron | 30.0% | |
| GTAATACCATTAACCAAATC+AGG | + | chr8_2:5453720-5453739 | None:intergenic | 30.0% | |
| ! | CTTTTGCTACCAATAAAAGA+AGG | + | chr8_2:5453946-5453965 | None:intergenic | 30.0% |
| TAGCGTAAAATGCTACTATA+CGG | + | chr8_2:5454164-5454183 | None:intergenic | 30.0% | |
| TTTACGCTATCAATATGTGA+CGG | - | chr8_2:5454175-5454194 | Msa1229620:intron | 30.0% | |
| ! | TTTTGTTGGACATTCTATCA+TGG | + | chr8_2:5454669-5454688 | None:intergenic | 30.0% |
| ATTGACACAATCTCACTAAT+AGG | + | chr8_2:5454782-5454801 | None:intergenic | 30.0% | |
| ATTCAAAGGTAAGATGACTA+TGG | + | chr8_2:5455067-5455086 | None:intergenic | 30.0% | |
| TTTACTAACAGCTCATTCAA+AGG | + | chr8_2:5455081-5455100 | None:intergenic | 30.0% | |
| AGTAAGATTAAAACAGCTTG+TGG | - | chr8_2:5455327-5455346 | Msa1229620:CDS | 30.0% | |
| GTAAGATTAAAACAGCTTGT+GGG | - | chr8_2:5455328-5455347 | Msa1229620:CDS | 30.0% | |
| !!! | TGTGTGTGTTTTGTTTTGAA+AGG | + | chr8_2:5455378-5455397 | None:intergenic | 30.0% |
| ATTTCAACTATGGATGCATT+TGG | + | chr8_2:5455438-5455457 | None:intergenic | 30.0% | |
| TAAGTTAAGTTTGCAATAGC+TGG | + | chr8_2:5455466-5455485 | None:intergenic | 30.0% | |
| GCTATTGCAAACTTAACTTA+AGG | - | chr8_2:5455466-5455485 | Msa1229620:intron | 30.0% | |
| !! | AATAATGATAATGGTACAGG+TGG | - | chr8_2:5455643-5455662 | Msa1229620:intron | 30.0% |
| ! | CAAATGTTGTCGAACATTTT+GGG | - | chr8_2:5455695-5455714 | Msa1229620:intron | 30.0% |
| CTATAAACAATCAGTGAAAC+AGG | + | chr8_2:5455820-5455839 | None:intergenic | 30.0% | |
| !! | TAGTAAATGGCTAGCTTTAT+AGG | - | chr8_2:5455860-5455879 | Msa1229620:intron | 30.0% |
| !! | TCATTGTGCTGTTTAAAATC+AGG | + | chr8_2:5456067-5456086 | None:intergenic | 30.0% |
| GATGCATTTAGGAAATTAGA+AGG | + | chr8_2:5456310-5456329 | None:intergenic | 30.0% | |
| CTAATTTCCTAAATGCATCA+TGG | - | chr8_2:5456311-5456330 | Msa1229620:intron | 30.0% | |
| ! | ATGTTTTCAGTGCTTAATAC+TGG | - | chr8_2:5456480-5456499 | Msa1229620:intron | 30.0% |
| ACGACAACATTGAAACAATA+AGG | - | chr8_2:5456528-5456547 | Msa1229620:intron | 30.0% | |
| ! | GACATTACATTACCTGTTTT+AGG | - | chr8_2:5456689-5456708 | Msa1229620:CDS | 30.0% |
| TTTCAGTCCAAAAAATGAGA+AGG | - | chr8_2:5456761-5456780 | Msa1229620:intron | 30.0% | |
| ACTGGCATAAACAAATTCAT+TGG | - | chr8_2:5457223-5457242 | Msa1229620:intron | 30.0% | |
| !!! | CCGGCAATTAGTTTTATATT+TGG | + | chr8_2:5457254-5457273 | None:intergenic | 30.0% |
| CCAACTGGTATAATTGTATT+CGG | - | chr8_2:5457349-5457368 | Msa1229620:intron | 30.0% | |
| ACTGTAAGAATTTACAGAAG+CGG | + | chr8_2:5457459-5457478 | None:intergenic | 30.0% | |
| ! | TTATGACTTGTCTGACAAAT+TGG | - | chr8_2:5457525-5457544 | Msa1229620:intron | 30.0% |
| CATAGATAAACATCAATTCC+TGG | + | chr8_2:5457667-5457686 | None:intergenic | 30.0% | |
| CAGGAATTGATGTTTATCTA+TGG | - | chr8_2:5457665-5457684 | Msa1229620:intron | 30.0% | |
| TGTTTATCTATGGTATTTGC+AGG | - | chr8_2:5457675-5457694 | Msa1229620:intron | 30.0% | |
| CAACAAAATACAGCAAAATG+CGG | + | chr8_2:5457784-5457803 | None:intergenic | 30.0% | |
| !! | TTTGCTGTATTTTGTTGTAG+AGG | - | chr8_2:5457787-5457806 | Msa1229620:intron | 30.0% |
| GACAAAAAAATATTACCGAG+TGG | - | chr8_2:5457836-5457855 | Msa1229620:intron | 30.0% | |
| TGTTAAGTACGAGAGAATTA+TGG | - | chr8_2:5457882-5457901 | Msa1229620:intron | 30.0% | |
| AGATGATATAAACTTCTACG+CGG | + | chr8_2:5457946-5457965 | None:intergenic | 30.0% | |
| TATCCAGGCATAAATAAGAA+AGG | + | chr8_2:5458039-5458058 | None:intergenic | 30.0% | |
| ! | TCTAAAGTTAGTACACAAGA+TGG | + | chr8_2:5458077-5458096 | None:intergenic | 30.0% |
| TACAATTCATATCAAACTGG+AGG | - | chr8_2:5458472-5458491 | Msa1229620:intron | 30.0% | |
| TATAAATGAATGAGTCGACA+AGG | + | chr8_2:5458968-5458987 | None:intergenic | 30.0% | |
| ! | TGTTTGAGTTATTTAAGCAC+GGG | - | chr8_2:5458999-5459018 | Msa1229620:five_prime_UTR | 30.0% |
| ! | ATCCCAACATTTTCAAATTC+TGG | - | chr8_2:5459029-5459048 | Msa1229620:five_prime_UTR | 30.0% |
| CTCCAGAATTTGAAAATGTT+GGG | + | chr8_2:5459034-5459053 | None:intergenic | 30.0% | |
| ACTCCAGAATTTGAAAATGT+TGG | + | chr8_2:5459035-5459054 | None:intergenic | 30.0% | |
| ! | TATGGAGTAATGGAAGGAAA+GGG | + | chr8_2:5452701-5452720 | None:intergenic | 35.0% |
| ! | ATTTCGTATGGAGTAATGGA+AGG | + | chr8_2:5452707-5452726 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTTTTAGTCGGTA+GGG | + | chr8_2:5452748-5452767 | None:intergenic | 35.0% |
| AGATCTAACTGCAAACGAAA+CGG | + | chr8_2:5452912-5452931 | None:intergenic | 35.0% | |
| ! | CAGAGAAAAAAAGCATGGAT+CGG | + | chr8_2:5452949-5452968 | None:intergenic | 35.0% |
| !! | ATGTGTTTGATTTGAGGTTG+CGG | - | chr8_2:5453143-5453162 | Msa1229620:intron | 35.0% |
| CATCGAAGAATGAGAGATTT+AGG | - | chr8_2:5453166-5453185 | Msa1229620:intron | 35.0% | |
| !!! | TGAAGTTTTGACTCCTGATT+TGG | - | chr8_2:5453704-5453723 | Msa1229620:intron | 35.0% |
| !! | TTGACTCCTGATTTGGTTAA+TGG | - | chr8_2:5453711-5453730 | Msa1229620:intron | 35.0% |
| TGTCTGCTTGATCTGTTAAT+TGG | - | chr8_2:5453792-5453811 | Msa1229620:intron | 35.0% | |
| GATTTAATATGATAGGCGGA+TGG | - | chr8_2:5453894-5453913 | Msa1229620:intron | 35.0% | |
| ! | TTTATTGGTAGCAAAAGTGC+AGG | - | chr8_2:5453949-5453968 | Msa1229620:intron | 35.0% |
| ! | TTTGTTCCCTCATTAAGTTG+CGG | - | chr8_2:5454112-5454131 | Msa1229620:intron | 35.0% |
| ! | AGTGTAGTTGCTATTACTCA+TGG | - | chr8_2:5454303-5454322 | Msa1229620:intron | 35.0% |
| ! | GTGTAGTTGCTATTACTCAT+GGG | - | chr8_2:5454304-5454323 | Msa1229620:intron | 35.0% |
| TGTTATTGAAGCTGCAAACA+AGG | - | chr8_2:5454330-5454349 | Msa1229620:intron | 35.0% | |
| GAATTATAGAATTTGGGTCC+CGG | - | chr8_2:5454474-5454493 | Msa1229620:intron | 35.0% | |
| AGTTGAATATCTTGTCGAGA+GGG | + | chr8_2:5455241-5455260 | None:intergenic | 35.0% | |
| !! | CTAGTTCTATAAGCTCTCAT+GGG | - | chr8_2:5455293-5455312 | Msa1229620:CDS | 35.0% |
| GCTGGTATACATTTCAACTA+TGG | + | chr8_2:5455448-5455467 | None:intergenic | 35.0% | |
| ACACAATAGAGACAGACAAA+TGG | + | chr8_2:5455559-5455578 | None:intergenic | 35.0% | |
| TTCGACAACATTTGCACATT+GGG | + | chr8_2:5455689-5455708 | None:intergenic | 35.0% | |
| ! | GCAAATGTTGTCGAACATTT+TGG | - | chr8_2:5455694-5455713 | Msa1229620:intron | 35.0% |
| AACAATAAGGAAGCGATTCA+AGG | - | chr8_2:5456541-5456560 | Msa1229620:intron | 35.0% | |
| !! | TTGTCTTTTCTCAAAAGCAC+AGG | + | chr8_2:5457284-5457303 | None:intergenic | 35.0% |
| !! | CTACTTTTCTTTGTACCAAC+TGG | - | chr8_2:5457334-5457353 | Msa1229620:intron | 35.0% |
| CCGAATACAATTATACCAGT+TGG | + | chr8_2:5457352-5457371 | None:intergenic | 35.0% | |
| ! | ATTTTGTACCTTCCTAGTGT+TGG | + | chr8_2:5457396-5457415 | None:intergenic | 35.0% |
| TTGGAACTTCCTTAGAATAC+AGG | - | chr8_2:5457544-5457563 | Msa1229620:intron | 35.0% | |
| TCAATTCCTGGAAAACATTG+CGG | + | chr8_2:5457655-5457674 | None:intergenic | 35.0% | |
| !!! | GTTTTTTCATATCACCCACT+CGG | + | chr8_2:5457854-5457873 | None:intergenic | 35.0% |
| AGTACGAGAGAATTATGGTT+AGG | - | chr8_2:5457887-5457906 | Msa1229620:intron | 35.0% | |
| ATAAACTTCTACGCGGAATT+GGG | + | chr8_2:5457939-5457958 | None:intergenic | 35.0% | |
| TATAAACTTCTACGCGGAAT+TGG | + | chr8_2:5457940-5457959 | None:intergenic | 35.0% | |
| ! | GAACCTTTCTTATTTATGCC+TGG | - | chr8_2:5458033-5458052 | Msa1229620:intron | 35.0% |
| TTTCTTTACAAGCCACTACT+AGG | - | chr8_2:5458257-5458276 | Msa1229620:intron | 35.0% | |
| !!! | TTTTCAGGTCACATTAGTGT+TGG | - | chr8_2:5458853-5458872 | Msa1229620:five_prime_UTR | 35.0% |
| GGTGCAACAATAGAATATAG+AGG | + | chr8_2:5458947-5458966 | None:intergenic | 35.0% | |
| ! | GTATGGAGTAATGGAAGGAA+AGG | + | chr8_2:5452702-5452721 | None:intergenic | 40.0% |
| TTAGTCGGTAGGGGTTAAAT+GGG | + | chr8_2:5452738-5452757 | None:intergenic | 40.0% | |
| TTTAGTCGGTAGGGGTTAAA+TGG | + | chr8_2:5452739-5452758 | None:intergenic | 40.0% | |
| !!! | TCGGTTTTTTTAGTCGGTAG+GGG | + | chr8_2:5452747-5452766 | None:intergenic | 40.0% |
| !!! | GTTCGGTTTTTTTAGTCGGT+AGG | + | chr8_2:5452749-5452768 | None:intergenic | 40.0% |
| GTTATGGTTAGGATCGTTGA+AGG | + | chr8_2:5452794-5452813 | None:intergenic | 40.0% | |
| TGTTGCTGTGTTCGATGAAT+TGG | - | chr8_2:5453042-5453061 | Msa1229620:intron | 40.0% | |
| GTGTTTGATGTTGCTGAGTA+CGG | - | chr8_2:5453372-5453391 | Msa1229620:intron | 40.0% | |
| CTTAGGCAATATCAACCATG+TGG | + | chr8_2:5453481-5453500 | None:intergenic | 40.0% | |
| GTTAATGGTATTACCTTGCG+TGG | - | chr8_2:5453726-5453745 | Msa1229620:intron | 40.0% | |
| CTGCTTGATCTGTTAATTGG+TGG | - | chr8_2:5453795-5453814 | Msa1229620:intron | 40.0% | |
| CATTTCGTGCTAGCTGAATT+TGG | - | chr8_2:5453822-5453841 | Msa1229620:intron | 40.0% | |
| ! | AGCTGCAAACAAGGTATTCA+TGG | - | chr8_2:5454339-5454358 | Msa1229620:intron | 40.0% |
| TGAGCATAGCTCATTTGGAA+GGG | - | chr8_2:5454497-5454516 | Msa1229620:intron | 40.0% | |
| AAGCATTATCCCACTAATCG+GGG | + | chr8_2:5454743-5454762 | None:intergenic | 40.0% | |
| CAAGCATTATCCCACTAATC+GGG | + | chr8_2:5454744-5454763 | None:intergenic | 40.0% | |
| CCAAGCATTATCCCACTAAT+CGG | + | chr8_2:5454745-5454764 | None:intergenic | 40.0% | |
| GATAATGCTTGGTTGTGTTG+TGG | - | chr8_2:5454753-5454772 | Msa1229620:intron | 40.0% | |
| CCTAACACAAACACAACTGT+AGG | + | chr8_2:5455027-5455046 | None:intergenic | 40.0% | |
| CCTACAGTTGTGTTTGTGTT+AGG | - | chr8_2:5455024-5455043 | Msa1229620:intron | 40.0% | |
| CAGTTGAATATCTTGTCGAG+AGG | + | chr8_2:5455242-5455261 | None:intergenic | 40.0% | |
| !! | GCTAGTTCTATAAGCTCTCA+TGG | - | chr8_2:5455292-5455311 | Msa1229620:CDS | 40.0% |
| GTTCGACAACATTTGCACAT+TGG | + | chr8_2:5455690-5455709 | None:intergenic | 40.0% | |
| ! | ATCAAATCTGGCTCCGAAAA+TGG | - | chr8_2:5455757-5455776 | Msa1229620:intron | 40.0% |
| ! | TCAAATCTGGCTCCGAAAAT+GGG | - | chr8_2:5455758-5455777 | Msa1229620:intron | 40.0% |
| CAATCAGTGAAACAGGACTA+CGG | + | chr8_2:5455813-5455832 | None:intergenic | 40.0% | |
| AGGAAAAATTGTTCCTTCCG+AGG | - | chr8_2:5456106-5456125 | Msa1229620:intron | 40.0% | |
| TTCCTTCCGAGGTAACAATT+AGG | - | chr8_2:5456117-5456136 | Msa1229620:intron | 40.0% | |
| CAGAAGCCTAATTGTTACCT+CGG | + | chr8_2:5456126-5456145 | None:intergenic | 40.0% | |
| GGTAGTACATTTATCTGCTC+AGG | + | chr8_2:5456289-5456308 | None:intergenic | 40.0% | |
| TGCAAAGCCATGATGCATTT+AGG | + | chr8_2:5456321-5456340 | None:intergenic | 40.0% | |
| CCTCTGGGCAATCAAAATAT+AGG | + | chr8_2:5456368-5456387 | None:intergenic | 40.0% | |
| !!! | CCTATATTTTGATTGCCCAG+AGG | - | chr8_2:5456365-5456384 | Msa1229620:intron | 40.0% |
| ATAGTGTAGGGTCTATTACC+TGG | + | chr8_2:5456422-5456441 | None:intergenic | 40.0% | |
| ! | GTTGTGTTTCTACCATGTCT+TGG | - | chr8_2:5456636-5456655 | Msa1229620:intron | 40.0% |
| ACAAGAAACTCACCAAGACA+TGG | + | chr8_2:5456651-5456670 | None:intergenic | 40.0% | |
| TTGTTTGCCTCATGTGCTAA+AGG | - | chr8_2:5456667-5456686 | Msa1229620:CDS | 40.0% | |
| GTAATGTCCTTTAGCACATG+AGG | + | chr8_2:5456677-5456696 | None:intergenic | 40.0% | |
| TTGCAGCATCAACCTAAAAC+AGG | + | chr8_2:5456704-5456723 | None:intergenic | 40.0% | |
| !!! | TGTTTTAGGTTGATGCTGCA+AGG | - | chr8_2:5456703-5456722 | Msa1229620:intron | 40.0% |
| !! | TGTTGAGGAGGTATTTGAGT+CGG | - | chr8_2:5456728-5456747 | Msa1229620:intron | 40.0% |
| ! | TTCAAACCGCAATGTTTTCC+AGG | - | chr8_2:5457646-5457665 | Msa1229620:intron | 40.0% |
| AATATCCAGCACGCAATCAA+GGG | + | chr8_2:5457717-5457736 | None:intergenic | 40.0% | |
| AAATATCCAGCACGCAATCA+AGG | + | chr8_2:5457718-5457737 | None:intergenic | 40.0% | |
| TTGCGTGCTGGATATTTAAG+AGG | - | chr8_2:5457721-5457740 | Msa1229620:intron | 40.0% | |
| ACGAGAGAATTATGGTTAGG+AGG | - | chr8_2:5457890-5457909 | Msa1229620:intron | 40.0% | |
| TTGAACGTGTCATCTTATCC+AGG | + | chr8_2:5458054-5458073 | None:intergenic | 40.0% | |
| ! | GGAGGTGATGTTGAAACTTT+TGG | - | chr8_2:5458490-5458509 | Msa1229620:intron | 40.0% |
| AATATAGAGGCAACAACCTC+AGG | + | chr8_2:5458934-5458953 | None:intergenic | 40.0% | |
| AGGTGGTTGCGTGATAGTAA+CGG | + | chr8_2:5452678-5452697 | None:intergenic | 45.0% | |
| ! | GAAAGCGCGAAAACGTGAAT+TGG | + | chr8_2:5452890-5452909 | None:intergenic | 45.0% |
| TTTGATGTTGCTGAGTACGG+AGG | - | chr8_2:5453375-5453394 | Msa1229620:intron | 45.0% | |
| CGCATGCACGAAATCAAACA+CGG | + | chr8_2:5453587-5453606 | None:intergenic | 45.0% | |
| GTATTACCTTGCGTGGCATT+TGG | - | chr8_2:5453733-5453752 | Msa1229620:intron | 45.0% | |
| ! | TCCCTCATTAAGTTGCGGTT+TGG | - | chr8_2:5454117-5454136 | Msa1229620:intron | 45.0% |
| GCCAAACCGCAACTTAATGA+GGG | + | chr8_2:5454121-5454140 | None:intergenic | 45.0% | |
| TGCCAAACCGCAACTTAATG+AGG | + | chr8_2:5454122-5454141 | None:intergenic | 45.0% | |
| ! | TGCGGTTTGGCATTAGTGAA+AGG | - | chr8_2:5454130-5454149 | Msa1229620:intron | 45.0% |
| TCCAAATGAGCTATGCTCAC+CGG | + | chr8_2:5454496-5454515 | None:intergenic | 45.0% | |
| GTGAGCATAGCTCATTTGGA+AGG | - | chr8_2:5454496-5454515 | Msa1229620:intron | 45.0% | |
| TTTGCGGTCAAATAGCCTAG+TGG | + | chr8_2:5454595-5454614 | None:intergenic | 45.0% | |
| CTAATCGGGGTCAGTACTAT+AGG | + | chr8_2:5454730-5454749 | None:intergenic | 45.0% | |
| !! | ATAGTACTGACCCCGATTAG+TGG | - | chr8_2:5454730-5454749 | Msa1229620:intron | 45.0% |
| !! | TAGTACTGACCCCGATTAGT+GGG | - | chr8_2:5454731-5454750 | Msa1229620:intron | 45.0% |
| CCGATTAGTGGGATAATGCT+TGG | - | chr8_2:5454742-5454761 | Msa1229620:intron | 45.0% | |
| ! | AGCTCTCATGGGAAGCTTTT+TGG | - | chr8_2:5455304-5455323 | Msa1229620:CDS | 45.0% |
| !! | TGATAATGGTACAGGTGGTC+CGG | - | chr8_2:5455648-5455667 | Msa1229620:intron | 45.0% |
| ! | ATTTGATTTCCGCTCGCAGA+AGG | + | chr8_2:5455744-5455763 | None:intergenic | 45.0% |
| GGACTACGGATCTATCACTA+AGG | + | chr8_2:5455799-5455818 | None:intergenic | 45.0% | |
| CAATGCTCAGAAGTTGACGT+TGG | + | chr8_2:5455980-5455999 | None:intergenic | 45.0% | |
| CAGCTTAAACTCGATGCAGA+TGG | + | chr8_2:5456014-5456033 | None:intergenic | 45.0% | |
| AGCCTAATTGTTACCTCGGA+AGG | + | chr8_2:5456122-5456141 | None:intergenic | 45.0% | |
| CAACAAGCAATGCAAGACAG+TGG | - | chr8_2:5456146-5456165 | Msa1229620:intron | 45.0% | |
| ! | TGATGGTTTTCCTCGCAATG+AGG | - | chr8_2:5456187-5456206 | Msa1229620:intron | 45.0% |
| TGATTGCCCAGAGGAAGAAA+TGG | - | chr8_2:5456374-5456393 | Msa1229620:intron | 45.0% | |
| GTCTCTCCATTTCTTCCTCT+GGG | + | chr8_2:5456383-5456402 | None:intergenic | 45.0% | |
| TGGAGAGACGACTTCTTAGT+AGG | - | chr8_2:5456394-5456413 | Msa1229620:intron | 45.0% | |
| ACGACTTCTTAGTAGGAACC+AGG | - | chr8_2:5456401-5456420 | Msa1229620:intron | 45.0% | |
| TGCAAAGGGAAAAGTTCGCA+AGG | - | chr8_2:5456604-5456623 | Msa1229620:intron | 45.0% | |
| GACTCAAATACCTCCTCAAC+AGG | + | chr8_2:5456729-5456748 | None:intergenic | 45.0% | |
| GGCTTGATACACACAAGTCT+AGG | + | chr8_2:5457375-5457394 | None:intergenic | 45.0% | |
| GTGTGTATCAAGCCAACACT+AGG | - | chr8_2:5457381-5457400 | Msa1229620:exon | 45.0% | |
| GTATCAAGCCAACACTAGGA+AGG | - | chr8_2:5457385-5457404 | Msa1229620:five_prime_UTR | 45.0% | |
| TGTGCTTGGCCTGTATTCTA+AGG | + | chr8_2:5457556-5457575 | None:intergenic | 45.0% | |
| TATGGTTAGGAGGTGAGCAA+TGG | - | chr8_2:5457900-5457919 | Msa1229620:intron | 45.0% | |
| ATGGTTAGGAGGTGAGCAAT+GGG | - | chr8_2:5457901-5457920 | Msa1229620:intron | 45.0% | |
| ! | AAAGAAAGGCACGTGACTGA+TGG | - | chr8_2:5458158-5458177 | Msa1229620:intron | 45.0% |
| AGTGTGTAAGTGCCCTTTGT+GGG | - | chr8_2:5459052-5459071 | Msa1229620:five_prime_UTR | 45.0% | |
| GTCCACTACAAACCCACAAA+GGG | + | chr8_2:5459067-5459086 | None:intergenic | 45.0% | |
| !! | AAAAAAAGAATTATATAATT+TGG | - | chr8_2:5454616-5454635 | Msa1229620:intron | 5.0% |
| !!! | TTTAAAAAAATATTTTTTGT+TGG | + | chr8_2:5454683-5454702 | None:intergenic | 5.0% |
| !!! | TTTTAAAGAATTAAATAATA+TGG | - | chr8_2:5454696-5454715 | Msa1229620:intron | 5.0% |
| ! | GTAATGGAAGGAAAGGGAGG+TGG | + | chr8_2:5452695-5452714 | None:intergenic | 50.0% |
| ! | GGAGTAATGGAAGGAAAGGG+AGG | + | chr8_2:5452698-5452717 | None:intergenic | 50.0% |
| TCTCTCCTCTTTCGCGCAAA+AGG | - | chr8_2:5452840-5452859 | Msa1229620:intron | 50.0% | |
| ! | CGTTACCTTTTGCGCGAAAG+AGG | + | chr8_2:5452848-5452867 | None:intergenic | 50.0% |
| CTTTCACCAAATGCCACGCA+AGG | + | chr8_2:5453742-5453761 | None:intergenic | 50.0% | |
| CCAAATGAGCTATGCTCACC+GGG | + | chr8_2:5454495-5454514 | None:intergenic | 50.0% | |
| GCATTGCAGTATGCAGGTGT+CGG | - | chr8_2:5454519-5454538 | Msa1229620:intron | 50.0% | |
| CATTGCAGTATGCAGGTGTC+GGG | - | chr8_2:5454520-5454539 | Msa1229620:intron | 50.0% | |
| ! | ATTGCAGTATGCAGGTGTCG+GGG | - | chr8_2:5454521-5454540 | Msa1229620:intron | 50.0% |
| AGCTGAATGAGCGAGGAATC+CGG | + | chr8_2:5454554-5454573 | None:intergenic | 50.0% | |
| CCTCGCTCATTCAGCTTAAG+CGG | - | chr8_2:5454558-5454577 | Msa1229620:intron | 50.0% | |
| !! | GCGGTGAATTTCTAGCCACT+AGG | - | chr8_2:5454577-5454596 | Msa1229620:intron | 50.0% |
| ! | GATAATGGTACAGGTGGTCC+GGG | - | chr8_2:5455649-5455668 | Msa1229620:intron | 50.0% |
| CTGCGAGCGGAAATCAAATC+TGG | - | chr8_2:5455745-5455764 | Msa1229620:intron | 50.0% | |
| CTCAGAAGTTGACGTTGGTC+AGG | + | chr8_2:5455975-5455994 | None:intergenic | 50.0% | |
| CCACTCTCTCAAATGCTGCA+CGG | + | chr8_2:5456217-5456236 | None:intergenic | 50.0% | |
| ! | TGCATCATGGCTTTGCAGAC+TGG | - | chr8_2:5456324-5456343 | Msa1229620:intron | 50.0% |
| CGTCTCTCCATTTCTTCCTC+TGG | + | chr8_2:5456384-5456403 | None:intergenic | 50.0% | |
| ! | CAAAAGCACAGGTTGTGAGC+CGG | + | chr8_2:5457273-5457292 | None:intergenic | 50.0% |
| GAGTGTGTAAGTGCCCTTTG+TGG | - | chr8_2:5459051-5459070 | Msa1229620:five_prime_UTR | 50.0% | |
| TGCCCTTTGTGGGTTTGTAG+TGG | - | chr8_2:5459062-5459081 | Msa1229620:five_prime_UTR | 50.0% | |
| GGTCCACTACAAACCCACAA+AGG | + | chr8_2:5459068-5459087 | None:intergenic | 50.0% | |
| CCCGGTGAGCATAGCTCATT+TGG | - | chr8_2:5454492-5454511 | Msa1229620:intron | 55.0% | |
| !! | GGAAGGGCATTGCAGTATGC+AGG | - | chr8_2:5454513-5454532 | Msa1229620:intron | 55.0% |
| GCTGAATGAGCGAGGAATCC+GGG | + | chr8_2:5454553-5454572 | None:intergenic | 55.0% | |
| CCGCTTAAGCTGAATGAGCG+AGG | + | chr8_2:5454561-5454580 | None:intergenic | 55.0% | |
| ! | TGGGTACCTTTTCCACTGCC+CGG | + | chr8_2:5455670-5455689 | None:intergenic | 55.0% |
| GGGTTTACTCACCTCAGTGC+TGG | - | chr8_2:5455715-5455734 | Msa1229620:intron | 55.0% | |
| ! | GCACGGTTTTCCTCATTGCG+AGG | + | chr8_2:5456200-5456219 | None:intergenic | 55.0% |
| CCGTGCAGCATTTGAGAGAG+TGG | - | chr8_2:5456214-5456233 | Msa1229620:intron | 55.0% | |
| TGATGCTGCAAGGCCTGTTG+AGG | - | chr8_2:5456713-5456732 | Msa1229620:intron | 55.0% | |
| TGTTGCCCTTGATTGCGTGC+TGG | - | chr8_2:5457709-5457728 | Msa1229620:intron | 55.0% | |
| GCAGAAGGTCACCAGCACTG+AGG | + | chr8_2:5455729-5455748 | None:intergenic | 60.0% | |
| TGCTGGTGACCTTCTGCGAG+CGG | - | chr8_2:5455732-5455751 | Msa1229620:intron | 60.0% | |
| TGCTGCAAGGCCTGTTGAGG+AGG | - | chr8_2:5456716-5456735 | Msa1229620:intron | 60.0% | |
| !! | CAGGTGTCGGGGTTCGAACC+CGG | - | chr8_2:5454532-5454551 | Msa1229620:intron | 65.0% |
| GGTGGTCCGGGCAGTGGAAA+AGG | - | chr8_2:5455661-5455680 | Msa1229620:intron | 65.0% | |
| GGTACAGGTGGTCCGGGCAG+TGG | - | chr8_2:5455655-5455674 | Msa1229620:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 5452569 | 5459134 | 5452569 | ID=Msa1229620;Name=Msa1229620 |
| chr8_2 | mRNA | 5452569 | 5459134 | 5452569 | ID=Msa1229620-mRNA-1;Parent=Msa1229620;Name=Msa1229620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=320|1|1|1|0.77|0.6|10|312|208 |
| chr8_2 | exon | 5452569 | 5452843 | 5452569 | ID=Msa1229620-mRNA-1:exon:1863;Parent=Msa1229620-mRNA-1 |
| chr8_2 | exon | 5453961 | 5454006 | 5453961 | ID=Msa1229620-mRNA-1:exon:1862;Parent=Msa1229620-mRNA-1 |
| chr8_2 | exon | 5454921 | 5454992 | 5454921 | ID=Msa1229620-mRNA-1:exon:1861;Parent=Msa1229620-mRNA-1 |
| chr8_2 | exon | 5455078 | 5455185 | 5455078 | ID=Msa1229620-mRNA-1:exon:1860;Parent=Msa1229620-mRNA-1 |
| chr8_2 | exon | 5455281 | 5455361 | 5455281 | ID=Msa1229620-mRNA-1:exon:1859;Parent=Msa1229620-mRNA-1 |
| chr8_2 | exon | 5455468 | 5455624 | 5455468 | ID=Msa1229620-mRNA-1:exon:1858;Parent=Msa1229620-mRNA-1 |
| chr8_2 | exon | 5455924 | 5456041 | 5455924 | ID=Msa1229620-mRNA-1:exon:1857;Parent=Msa1229620-mRNA-1 |
| chr8_2 | exon | 5456658 | 5456709 | 5456658 | ID=Msa1229620-mRNA-1:exon:1856;Parent=Msa1229620-mRNA-1 |
| chr8_2 | exon | 5457352 | 5457408 | 5457352 | ID=Msa1229620-mRNA-1:exon:1855;Parent=Msa1229620-mRNA-1 |
| chr8_2 | exon | 5458842 | 5459134 | 5458842 | ID=Msa1229620-mRNA-1:exon:1854;Parent=Msa1229620-mRNA-1 |
| chr8_2 | five_prime_UTR | 5458842 | 5459134 | 5458842 | ID=Msa1229620-mRNA-1:five_prime_utr;Parent=Msa1229620-mRNA-1 |
| chr8_2 | five_prime_UTR | 5457382 | 5457408 | 5457382 | ID=Msa1229620-mRNA-1:five_prime_utr;Parent=Msa1229620-mRNA-1 |
| chr8_2 | CDS | 5457352 | 5457381 | 5457352 | ID=Msa1229620-mRNA-1:cds;Parent=Msa1229620-mRNA-1 |
| chr8_2 | CDS | 5456658 | 5456709 | 5456658 | ID=Msa1229620-mRNA-1:cds;Parent=Msa1229620-mRNA-1 |
| chr8_2 | CDS | 5455924 | 5456041 | 5455924 | ID=Msa1229620-mRNA-1:cds;Parent=Msa1229620-mRNA-1 |
| chr8_2 | CDS | 5455468 | 5455624 | 5455468 | ID=Msa1229620-mRNA-1:cds;Parent=Msa1229620-mRNA-1 |
| chr8_2 | CDS | 5455281 | 5455361 | 5455281 | ID=Msa1229620-mRNA-1:cds;Parent=Msa1229620-mRNA-1 |
| chr8_2 | CDS | 5455078 | 5455185 | 5455078 | ID=Msa1229620-mRNA-1:cds;Parent=Msa1229620-mRNA-1 |
| chr8_2 | CDS | 5454921 | 5454992 | 5454921 | ID=Msa1229620-mRNA-1:cds;Parent=Msa1229620-mRNA-1 |
| chr8_2 | CDS | 5453998 | 5454006 | 5453998 | ID=Msa1229620-mRNA-1:cds;Parent=Msa1229620-mRNA-1 |
| chr8_2 | three_prime_UTR | 5453961 | 5453997 | 5453961 | ID=Msa1229620-mRNA-1:three_prime_utr;Parent=Msa1229620-mRNA-1 |
| chr8_2 | three_prime_UTR | 5452569 | 5452843 | 5452569 | ID=Msa1229620-mRNA-1:three_prime_utr;Parent=Msa1229620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
