Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310230 | sp|O04905|KCY3_ARATH | 80.288 | 208 | 34 | 2 | 1 | 208 | 1 | 201 | 1.21e-121 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310230 | B7FMF1 | 96.635 | 208 | 7 | 0 | 1 | 208 | 1 | 208 | 1.58e-145 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa1310230 | 0.800320 | 1.522997e-48 | -8.615850e-47 |
| Msa0633570 | Msa1310230 | 0.807623 | 4.617142e-50 | -8.615850e-47 |
| Msa0656810 | Msa1310230 | 0.812126 | 4.959803e-51 | -8.615850e-47 |
| Msa0705000 | Msa1310230 | 0.809046 | 2.295633e-50 | -8.615850e-47 |
| Msa0127530 | Msa1310230 | 0.805266 | 1.450269e-49 | -8.615850e-47 |
| Msa0127850 | Msa1310230 | 0.808633 | 2.813530e-50 | -8.615850e-47 |
| Msa0167400 | Msa1310230 | 0.802866 | 4.577357e-49 | -8.615850e-47 |
| Msa1229620 | Msa1310230 | 0.997502 | 1.087550e-243 | -8.615850e-47 |
| Msa1271780 | Msa1310230 | 0.949737 | 6.931428e-108 | -8.615850e-47 |
| Msa1310230 | Msa1393430 | 0.928122 | 4.506127e-92 | -8.615850e-47 |
| Msa1310230 | Msa1435440 | 0.962929 | 1.818034e-121 | -8.615850e-47 |
| Msa0593700 | Msa1310230 | 0.802845 | 4.622821e-49 | -8.615850e-47 |
| Msa0968440 | Msa1310230 | 0.811540 | 6.654232e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310230 | MtrunA17_Chr8g0337051 | 96.635 | 208 | 7 | 0 | 1 | 208 | 1 | 208 | 3.05e-149 | 412 |
| Msa1310230 | MtrunA17_Chr5g0428971 | 60.753 | 186 | 73 | 0 | 22 | 207 | 32 | 217 | 3.22e-81 | 241 |
| Msa1310230 | MtrunA17_Chr4g0018221 | 60.753 | 186 | 73 | 0 | 22 | 207 | 55 | 240 | 7.29e-81 | 241 |
| Msa1310230 | MtrunA17_Chr2g0305051 | 27.570 | 214 | 125 | 4 | 15 | 201 | 66 | 276 | 3.37e-24 | 99.8 |
| Msa1310230 | MtrunA17_Chr4g0017231 | 34.375 | 128 | 81 | 2 | 19 | 144 | 85 | 211 | 9.10e-24 | 95.9 |
| Msa1310230 | MtrunA17_Chr4g0057771 | 26.066 | 211 | 123 | 4 | 24 | 201 | 32 | 242 | 7.19e-20 | 84.3 |
| Msa1310230 | MtrunA17_Chr1g0181801 | 25.888 | 197 | 101 | 4 | 27 | 180 | 117 | 311 | 6.04e-16 | 75.1 |
| Msa1310230 | MtrunA17_Chr7g0263541 | 24.424 | 217 | 122 | 4 | 18 | 193 | 34 | 249 | 1.25e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310230 | AT5G26667.3 | 80.288 | 208 | 34 | 2 | 1 | 208 | 1 | 201 | 1.23e-122 | 345 |
| Msa1310230 | AT5G26667.2 | 80.288 | 208 | 34 | 2 | 1 | 208 | 1 | 201 | 1.23e-122 | 345 |
| Msa1310230 | AT5G26667.4 | 80.288 | 208 | 34 | 2 | 1 | 208 | 1 | 201 | 1.23e-122 | 345 |
| Msa1310230 | AT5G26667.1 | 81.068 | 206 | 32 | 2 | 1 | 206 | 1 | 199 | 2.83e-122 | 345 |
| Msa1310230 | AT3G60180.1 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 3.34e-108 | 309 |
| Msa1310230 | AT3G60180.2 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 3.34e-108 | 309 |
| Msa1310230 | AT4G25280.1 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.60e-78 | 236 |
| Msa1310230 | AT4G25280.2 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.60e-78 | 236 |
| Msa1310230 | AT3G60961.1 | 68.421 | 133 | 38 | 1 | 73 | 201 | 1 | 133 | 6.93e-66 | 199 |
| Msa1310230 | AT5G35170.2 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 3.88e-27 | 108 |
| Msa1310230 | AT5G35170.1 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 4.45e-27 | 108 |
| Msa1310230 | AT5G47840.1 | 30.144 | 209 | 116 | 4 | 20 | 201 | 63 | 268 | 1.91e-26 | 103 |
| Msa1310230 | AT5G47840.2 | 37.008 | 127 | 77 | 2 | 20 | 144 | 63 | 188 | 5.93e-26 | 101 |
| Msa1310230 | AT5G63400.1 | 27.488 | 211 | 120 | 4 | 24 | 201 | 36 | 246 | 1.61e-20 | 86.7 |
| Msa1310230 | AT5G50370.1 | 27.723 | 202 | 112 | 5 | 23 | 191 | 37 | 237 | 4.73e-18 | 80.1 |
| Msa1310230 | AT2G37250.1 | 25.238 | 210 | 112 | 3 | 27 | 193 | 57 | 264 | 2.68e-16 | 75.9 |
| Msa1310230 | AT2G39270.1 | 27.411 | 197 | 98 | 4 | 27 | 180 | 70 | 264 | 2.62e-15 | 73.2 |
| Msa1310230 | AT5G63400.2 | 31.200 | 125 | 82 | 2 | 24 | 144 | 36 | 160 | 6.80e-14 | 67.8 |
| Msa1310230 | AT5G50370.2 | 27.072 | 181 | 98 | 5 | 23 | 170 | 37 | 216 | 7.52e-14 | 68.2 |
Find 82 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAATCAGTTTGATTTAA+TGG | 0.106693 | 8_4:+6841638 | None:intergenic |
| ATCAAATCTGGCTCCGAAAA+TGG | 0.173136 | 8_4:-6844954 | Msa1310230:CDS |
| TTTAGTCGGTAGGGGTTAAA+TGG | 0.194002 | 8_4:+6847974 | None:intergenic |
| TTCCTTCTTTAATCATATTC+TGG | 0.194476 | 8_4:+6844623 | None:intergenic |
| GCAAATGTTGTCGAACATTT+TGG | 0.209865 | 8_4:-6845017 | Msa1310230:CDS |
| CGTCTCTCCATTTCTTCCTC+TGG | 0.293885 | 8_4:+6844330 | None:intergenic |
| AATGACAAATTTCTTATTGA+TGG | 0.306611 | 8_4:-6844541 | Msa1310230:CDS |
| TTCGACAACATTTGCACATT+GGG | 0.333869 | 8_4:+6845025 | None:intergenic |
| ATCGTTGAAGGTATTTATAT+TGG | 0.359065 | 8_4:+6847931 | None:intergenic |
| ACGACAACATTGAAACAATA+AGG | 0.372468 | 8_4:-6844183 | Msa1310230:CDS |
| CCTACAGTTGTGTTTGTGTT+AGG | 0.377583 | 8_4:-6845687 | Msa1310230:intron |
| CTCCAGAATTTGAAAATGTT+GGG | 0.382498 | 8_4:+6841706 | None:intergenic |
| CCTCTGGGCAATCAAAATAT+AGG | 0.386242 | 8_4:+6844346 | None:intergenic |
| GAGAAATTGTTGTTATGGTT+AGG | 0.392336 | 8_4:+6847908 | None:intergenic |
| GTCTCTCCATTTCTTCCTCT+GGG | 0.403856 | 8_4:+6844331 | None:intergenic |
| CTGCGAGCGGAAATCAAATC+TGG | 0.406089 | 8_4:-6844966 | Msa1310230:CDS |
| AATCTGAGAAATTGTTGTTA+TGG | 0.408867 | 8_4:+6847903 | None:intergenic |
| TGATTGCCCAGAGGAAGAAA+TGG | 0.417731 | 8_4:-6844337 | Msa1310230:CDS |
| GACTCAAATACCTCCTCAAC+AGG | 0.418858 | 8_4:+6843985 | None:intergenic |
| ACTCCAGAATTTGAAAATGT+TGG | 0.420168 | 8_4:+6841705 | None:intergenic |
| ATTTATTTGTAGGATACAAA+TGG | 0.422348 | 8_4:-6845729 | Msa1310230:intron |
| TTAGTCGGTAGGGGTTAAAT+GGG | 0.427969 | 8_4:+6847975 | None:intergenic |
| TGATAATGGTACAGGTGGTC+CGG | 0.428269 | 8_4:-6845063 | Msa1310230:intron |
| TTCCTTCCGAGGTAACAATT+AGG | 0.429145 | 8_4:-6844594 | Msa1310230:CDS |
| TCTCTCCTCTTTCGCGCAAA+AGG | 0.438303 | 8_4:-6847870 | Msa1310230:intron |
| ATTAATTATTATGATGCAAA+GGG | 0.443787 | 8_4:-6844121 | Msa1310230:CDS |
| AACAATAAGGAAGCGATTCA+AGG | 0.444129 | 8_4:-6844170 | Msa1310230:CDS |
| TCAAATCTGGCTCCGAAAAT+GGG | 0.446253 | 8_4:-6844953 | Msa1310230:intron |
| GGGTTTACTCACCTCAGTGC+TGG | 0.448432 | 8_4:-6844996 | Msa1310230:CDS |
| TTGCGTGCTGGATATTTAAG+AGG | 0.450042 | 8_4:-6842990 | Msa1310230:intron |
| GGTACAGGTGGTCCGGGCAG+TGG | 0.454545 | 8_4:-6845056 | Msa1310230:intron |
| AGTGTGTAAGTGCCCTTTGT+GGG | 0.455214 | 8_4:-6841685 | Msa1310230:three_prime_UTR |
| AATATAGAGGCAACAACCTC+AGG | 0.460417 | 8_4:+6841806 | None:intergenic |
| ATATTGGTGTTAAGAAAGTT+CGG | 0.460947 | 8_4:+6847947 | None:intergenic |
| TAAAATTTCGTATGGAGTAA+TGG | 0.466516 | 8_4:+6848002 | None:intergenic |
| TGGAGAGACGACTTCTTAGT+AGG | 0.467613 | 8_4:-6844317 | Msa1310230:CDS |
| GGTGGTCCGGGCAGTGGAAA+AGG | 0.473432 | 8_4:-6845050 | Msa1310230:CDS |
| AAATATCCAGCACGCAATCA+AGG | 0.478107 | 8_4:+6842996 | None:intergenic |
| TCAAAATATAGGACAAATGT+TGG | 0.497184 | 8_4:+6844357 | None:intergenic |
| AGTGTAGTTGCTATTACTCA+TGG | 0.503526 | 8_4:-6846407 | Msa1310230:exon |
| ATCCAGAATATGATTAAAGA+AGG | 0.504467 | 8_4:-6844625 | Msa1310230:CDS |
| TGGGAAAATAAAATTTCGTA+TGG | 0.508074 | 8_4:+6847994 | None:intergenic |
| ATATCTAGCAACAAAATATG+AGG | 0.509211 | 8_4:+6841847 | None:intergenic |
| TGATTCTTATGTTCATTCGA+TGG | 0.509409 | 8_4:-6841624 | None:intergenic |
| GTTATGGTTAGGATCGTTGA+AGG | 0.512352 | 8_4:+6847919 | None:intergenic |
| GCATCATAATAATTAATCAC+AGG | 0.514630 | 8_4:+6844127 | None:intergenic |
| TGCCCTTTGTGGGTTTGTAG+TGG | 0.517614 | 8_4:-6841675 | Msa1310230:three_prime_UTR |
| GGTGCAACAATAGAATATAG+AGG | 0.520858 | 8_4:+6841793 | None:intergenic |
| GATAATGGTACAGGTGGTCC+GGG | 0.533653 | 8_4:-6845062 | Msa1310230:intron |
| AGCCTAATTGTTACCTCGGA+AGG | 0.535061 | 8_4:+6844592 | None:intergenic |
| GAGTGTGTAAGTGCCCTTTG+TGG | 0.535947 | 8_4:-6841686 | Msa1310230:three_prime_UTR |
| GTCCACTACAAACCCACAAA+GGG | 0.537093 | 8_4:+6841673 | None:intergenic |
| GTAATGGAAGGAAAGGGAGG+TGG | 0.538102 | 8_4:+6848018 | None:intergenic |
| GTTCGACAACATTTGCACAT+TGG | 0.539900 | 8_4:+6845024 | None:intergenic |
| GTATGGAGTAATGGAAGGAA+AGG | 0.543753 | 8_4:+6848011 | None:intergenic |
| GATTAATTATTATGATGCAA+AGG | 0.546499 | 8_4:-6844122 | Msa1310230:CDS |
| TTGTTTGAGTTATTTAAGCA+CGG | 0.546632 | 8_4:-6841739 | Msa1310230:three_prime_UTR |
| ATTTGATTTCCGCTCGCAGA+AGG | 0.550406 | 8_4:+6844970 | None:intergenic |
| CAGAAGCCTAATTGTTACCT+CGG | 0.555573 | 8_4:+6844588 | None:intergenic |
| GGAGTAATGGAAGGAAAGGG+AGG | 0.556953 | 8_4:+6848015 | None:intergenic |
| TGTTTGAGTTATTTAAGCAC+GGG | 0.562756 | 8_4:-6841738 | Msa1310230:three_prime_UTR |
| TGTTATTGAAGCTGCAAACA+AGG | 0.570574 | 8_4:-6846380 | Msa1310230:intron |
| CCGTGCAGCATTTGAGAGAG+TGG | 0.571248 | 8_4:-6844497 | Msa1310230:intron |
| TGCTGGTGACCTTCTGCGAG+CGG | 0.575371 | 8_4:-6844979 | Msa1310230:CDS |
| CATCATAATAATTAATCACA+GGG | 0.576231 | 8_4:+6844128 | None:intergenic |
| CCTAACACAAACACAACTGT+AGG | 0.576692 | 8_4:+6845687 | None:intergenic |
| ATTTCGTATGGAGTAATGGA+AGG | 0.578668 | 8_4:+6848006 | None:intergenic |
| TATGGAGTAATGGAAGGAAA+GGG | 0.582559 | 8_4:+6848012 | None:intergenic |
| TGTTGCCCTTGATTGCGTGC+TGG | 0.583464 | 8_4:-6843002 | Msa1310230:three_prime_UTR |
| AATATCCAGCACGCAATCAA+GGG | 0.591954 | 8_4:+6842997 | None:intergenic |
| TGTTGAGGAGGTATTTGAGT+CGG | 0.603618 | 8_4:-6843983 | Msa1310230:CDS |
| AGGTGGTTGCGTGATAGTAA+CGG | 0.605517 | 8_4:+6848035 | None:intergenic |
| TGCTGCAAGGCCTGTTGAGG+AGG | 0.615003 | 8_4:-6843995 | Msa1310230:CDS |
| GGTCCACTACAAACCCACAA+AGG | 0.618270 | 8_4:+6841672 | None:intergenic |
| GTGTAGTTGCTATTACTCAT+GGG | 0.624342 | 8_4:-6846406 | Msa1310230:exon |
| CCACTCTCTCAAATGCTGCA+CGG | 0.625742 | 8_4:+6844497 | None:intergenic |
| TGATGCTGCAAGGCCTGTTG+AGG | 0.626580 | 8_4:-6843998 | Msa1310230:CDS |
| TGCAAAGGGAAAAGTTCGCA+AGG | 0.641623 | 8_4:-6844107 | Msa1310230:intron |
| ACGACTTCTTAGTAGGAACC+AGG | 0.649336 | 8_4:-6844310 | Msa1310230:intron |
| CAACAAGCAATGCAAGACAG+TGG | 0.683184 | 8_4:-6844565 | Msa1310230:CDS |
| TATAAATGAATGAGTCGACA+AGG | 0.689782 | 8_4:+6841772 | None:intergenic |
| GCAGAAGGTCACCAGCACTG+AGG | 0.757069 | 8_4:+6844985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCATTTACATAAAATTA+GGG | + | chr8_4:6843122-6843141 | None:intergenic | 10.0% |
| !! | TAATTCATTTACATAAAATT+AGG | + | chr8_4:6843123-6843142 | None:intergenic | 10.0% |
| !! | TTTACATAAATAATTTATCT+TGG | - | chr8_4:6843290-6843309 | Msa1310230:intron | 10.0% |
| !!! | ATATAATTCTTTTTTTTTTG+CGG | + | chr8_4:6843667-6843686 | None:intergenic | 10.0% |
| !! | TAAAATATGATAAAGTAAAA+GGG | + | chr8_4:6846100-6846119 | None:intergenic | 10.0% |
| !! | ATAAAATATGATAAAGTAAA+AGG | + | chr8_4:6846101-6846120 | None:intergenic | 10.0% |
| !! | TTAAATTTAAATAAAGATAC+TGG | - | chr8_4:6846260-6846279 | Msa1310230:intron | 10.0% |
| !!! | AAAATTTTGAAAATGATATT+GGG | - | chr8_4:6846466-6846485 | Msa1310230:intron | 10.0% |
| !! | AATATAGTAAGTTAATATTA+TGG | - | chr8_4:6847666-6847685 | Msa1310230:intron | 10.0% |
| !!! | TTATTTTTTTCACATTGATT+AGG | - | chr8_4:6842245-6842264 | Msa1310230:intron | 15.0% |
| !!! | TGAATTTTTAACATTGATTA+GGG | - | chr8_4:6842469-6842488 | Msa1310230:intron | 15.0% |
| !! | ATATGTAGATTTAATATGAT+AGG | - | chr8_4:6842944-6842963 | Msa1310230:intron | 15.0% |
| !! | ATTCATTTACATAAAATTAG+GGG | + | chr8_4:6843121-6843140 | None:intergenic | 15.0% |
| !! | TTATGTAAATGAATTATGAT+TGG | - | chr8_4:6843127-6843146 | Msa1310230:intron | 15.0% |
| !! | AATTATTTATGTAAAGAATC+AGG | + | chr8_4:6843285-6843304 | None:intergenic | 15.0% |
| !! | TCTATAGAATTATAGAATTT+GGG | - | chr8_4:6843524-6843543 | Msa1310230:intron | 15.0% |
| !! | AAGAATTAAATAATATGGTT+TGG | - | chr8_4:6843756-6843775 | Msa1310230:intron | 15.0% |
| !! | TGAATTCTATAATTAAACAA+AGG | + | chr8_4:6843894-6843913 | None:intergenic | 15.0% |
| !!! | TCAATTCTTTATTTATTTGT+AGG | - | chr8_4:6844027-6844046 | Msa1310230:intron | 15.0% |
| !! | TATTGATCTAATAATGATAA+TGG | - | chr8_4:6844689-6844708 | Msa1310230:intron | 15.0% |
| !! | ATTAATTATTATGATGCAAA+GGG | - | chr8_4:6845645-6845664 | Msa1310230:intron | 15.0% |
| !!! | CAAAATTTTGAAAATGATAT+TGG | - | chr8_4:6846465-6846484 | Msa1310230:intron | 15.0% |
| !! | TATGACAAAATAAAATGTAT+GGG | + | chr8_4:6846810-6846829 | None:intergenic | 15.0% |
| !! | ATATGACAAAATAAAATGTA+TGG | + | chr8_4:6846811-6846830 | None:intergenic | 15.0% |
| !!! | TTTTTCCATTTTTTTTTTTC+AGG | - | chr8_4:6847867-6847886 | Msa1310230:intron | 15.0% |
| !! | GATTTAATGGTTAAAAATAT+TGG | + | chr8_4:6848118-6848137 | None:intergenic | 15.0% |
| !!! | TGAAATTTTCAACATTGATT+AGG | - | chr8_4:6842130-6842149 | Msa1310230:intron | 20.0% |
| !!! | CTGAATTTTTAACATTGATT+AGG | - | chr8_4:6842468-6842487 | Msa1310230:intron | 20.0% |
| !!! | TGAATTTTTTGACACTATTT+AGG | - | chr8_4:6842573-6842592 | Msa1310230:intron | 20.0% |
| !!! | GAATTTTTTGACACTATTTA+GGG | - | chr8_4:6842574-6842593 | Msa1310230:intron | 20.0% |
| !! | TATCTGCAAATAAAGAAATA+CGG | + | chr8_4:6843334-6843353 | None:intergenic | 20.0% |
| !!! | AATCAGATTTTCAAAAGAAA+CGG | + | chr8_4:6843472-6843491 | None:intergenic | 20.0% |
| !! | CTCTATAGAATTATAGAATT+TGG | - | chr8_4:6843523-6843542 | Msa1310230:intron | 20.0% |
| !! | TTAATCACTTATTTGATTGT+AGG | - | chr8_4:6843957-6843976 | Msa1310230:CDS | 20.0% |
| !! | ATTTATTTGTAGGATACAAA+TGG | - | chr8_4:6844037-6844056 | Msa1310230:intron | 20.0% |
| !!! | ACTGCTTGTTATAAATAAAT+TGG | + | chr8_4:6844211-6844230 | None:intergenic | 20.0% |
| !! | GCTTATTTATGTTTATCTTA+AGG | + | chr8_4:6844466-6844485 | None:intergenic | 20.0% |
| !!! | ATATAATTTGTACCCATTTT+CGG | + | chr8_4:6844828-6844847 | None:intergenic | 20.0% |
| !! | ACTATTTCAAAAGAAGAAAA+GGG | + | chr8_4:6844899-6844918 | None:intergenic | 20.0% |
| !! | TACTATTTCAAAAGAAGAAA+AGG | + | chr8_4:6844900-6844919 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTGAAATAGTAAA+TGG | - | chr8_4:6844902-6844921 | Msa1310230:intron | 20.0% |
| !! | AATTTCTATGTATTTATGCT+AGG | - | chr8_4:6844987-6845006 | Msa1310230:CDS | 20.0% |
| !! | AATGACAAATTTCTTATTGA+TGG | - | chr8_4:6845225-6845244 | Msa1310230:intron | 20.0% |
| !! | CATCATAATAATTAATCACA+GGG | + | chr8_4:6845641-6845660 | None:intergenic | 20.0% |
| !! | GATTAATTATTATGATGCAA+AGG | - | chr8_4:6845644-6845663 | Msa1310230:intron | 20.0% |
| !!! | ATTTTCTCTTTGATAGAAAA+TGG | + | chr8_4:6845888-6845907 | None:intergenic | 20.0% |
| !! | TTTCTATCAAAGAGAAAATT+TGG | - | chr8_4:6845889-6845908 | Msa1310230:intron | 20.0% |
| !! | TTTATTTAAAAACTCATGCA+AGG | + | chr8_4:6846003-6846022 | None:intergenic | 20.0% |
| !! | ATTAAGAACAATATTAACAG+TGG | - | chr8_4:6846174-6846193 | Msa1310230:intron | 20.0% |
| !! | AATTATAATTTCAATGTGCT+TGG | + | chr8_4:6846625-6846644 | None:intergenic | 20.0% |
| !! | ATGACAAAATAAAATGTATG+GGG | + | chr8_4:6846809-6846828 | None:intergenic | 20.0% |
| !!! | TAGATTAGATATTTTGTTGA+TGG | - | chr8_4:6847148-6847167 | Msa1310230:intron | 20.0% |
| !! | TGAAATTGATAAGAAAAGAA+AGG | - | chr8_4:6847199-6847218 | Msa1310230:intron | 20.0% |
| !! | TACCAAAAAGCTTATTATAT+TGG | - | chr8_4:6847427-6847446 | Msa1310230:intron | 20.0% |
| !!! | ATCCAATATAATAAGCTTTT+TGG | + | chr8_4:6847432-6847451 | None:intergenic | 20.0% |
| !! | ATATACAATTCATATCAAAC+TGG | - | chr8_4:6847498-6847517 | Msa1310230:intron | 20.0% |
| !!! | AATTATAGATTTTGTATGCT+CGG | - | chr8_4:6847597-6847616 | Msa1310230:intron | 20.0% |
| !!! | TTAGATTTGTGAAGTATTTT+AGG | - | chr8_4:6847639-6847658 | Msa1310230:intron | 20.0% |
| !! | TCATTTGTTTATTATTGCAT+TGG | - | chr8_4:6847745-6847764 | Msa1310230:intron | 20.0% |
| !!! | ATTATTGCATTGGTTTTTTA+TGG | - | chr8_4:6847755-6847774 | Msa1310230:intron | 20.0% |
| !!! | AAAAATGTATTTTATACCTG+AGG | - | chr8_4:6847944-6847963 | Msa1310230:five_prime_UTR | 20.0% |
| !!! | TAAGAATCAGTTTGATTTAA+TGG | + | chr8_4:6848131-6848150 | None:intergenic | 20.0% |
| ! | TAAAATTTCGTATGGAGTAA+TGG | + | chr8_4:6841767-6841786 | None:intergenic | 25.0% |
| ! | TGGGAAAATAAAATTTCGTA+TGG | + | chr8_4:6841775-6841794 | None:intergenic | 25.0% |
| !!! | ATATTGGTGTTAAGAAAGTT+CGG | + | chr8_4:6841822-6841841 | None:intergenic | 25.0% |
| !!! | ATCGTTGAAGGTATTTATAT+TGG | + | chr8_4:6841838-6841857 | None:intergenic | 25.0% |
| !! | AATCTGAGAAATTGTTGTTA+TGG | + | chr8_4:6841866-6841885 | None:intergenic | 25.0% |
| !!! | TTTTAACATTGATTAGCTTG+TGG | - | chr8_4:6842359-6842378 | Msa1310230:intron | 25.0% |
| ! | TATTGCCTAAGAATAAGAAA+TGG | - | chr8_4:6842547-6842566 | Msa1310230:intron | 25.0% |
| ! | TGTAGATTTAATATGATAGG+CGG | - | chr8_4:6842947-6842966 | Msa1310230:intron | 25.0% |
| ! | AAAAGAAGGGAAAATGTATT+TGG | + | chr8_4:6842989-6843008 | None:intergenic | 25.0% |
| !! | TACATTTTCCCTTCTTTTAT+TGG | - | chr8_4:6842991-6843010 | Msa1310230:three_prime_UTR | 25.0% |
| !! | TTTTGCTACCAATAAAAGAA+GGG | + | chr8_4:6843002-6843021 | None:intergenic | 25.0% |
| ! | AAAAGACAGGAATATGTATT+TGG | + | chr8_4:6843081-6843100 | None:intergenic | 25.0% |
| !! | CTTTTGATACTAAAAAAGAC+AGG | + | chr8_4:6843094-6843113 | None:intergenic | 25.0% |
| ! | ATCTGCAAATAAAGAAATAC+GGG | + | chr8_4:6843333-6843352 | None:intergenic | 25.0% |
| !!! | GTTTCTTTTGAAAATCTGAT+TGG | - | chr8_4:6843471-6843490 | Msa1310230:intron | 25.0% |
| !!! | ATTCAGTATTGATTTCAACT+TGG | - | chr8_4:6843930-6843949 | Msa1310230:intron | 25.0% |
| ! | ATTTGATTGTAGGATACTAA+CGG | - | chr8_4:6843967-6843986 | Msa1310230:CDS | 25.0% |
| !!! | CAACTGTAGGTTTTTTATTT+AGG | + | chr8_4:6844069-6844088 | None:intergenic | 25.0% |
| ! | CATAAATAGTCAAATGCATT+AGG | + | chr8_4:6844161-6844180 | None:intergenic | 25.0% |
| ! | ACAAGATATTCAACTGATAT+AGG | - | chr8_4:6844301-6844320 | Msa1310230:intron | 25.0% |
| ! | ATTCAACTGATATAGGTATT+CGG | - | chr8_4:6844308-6844327 | Msa1310230:intron | 25.0% |
| ! | TAAATACATTCGCTTTCAAA+GGG | + | chr8_4:6844586-6844605 | None:intergenic | 25.0% |
| ! | ATAAATACATTCGCTTTCAA+AGG | + | chr8_4:6844587-6844606 | None:intergenic | 25.0% |
| ! | TTTATTGTTGAAGTTGTTTG+TGG | - | chr8_4:6844633-6844652 | Msa1310230:CDS | 25.0% |
| !!! | TCTAATAATGATAATGGTAC+AGG | - | chr8_4:6844695-6844714 | Msa1310230:intron | 25.0% |
| ! | ATGTATTTATGCTAGGTTAT+TGG | - | chr8_4:6844994-6845013 | Msa1310230:CDS | 25.0% |
| ! | TGTATTTATGCTAGGTTATT+GGG | - | chr8_4:6844995-6845014 | Msa1310230:CDS | 25.0% |
| ! | ATCCAGAATATGATTAAAGA+AGG | - | chr8_4:6845141-6845160 | Msa1310230:intron | 25.0% |
| ! | TTCCTTCTTTAATCATATTC+TGG | + | chr8_4:6845146-6845165 | None:intergenic | 25.0% |
| ! | TCAAAATATAGGACAAATGT+TGG | + | chr8_4:6845412-6845431 | None:intergenic | 25.0% |
| ! | ATGTATTGCATAATAGTGTA+GGG | + | chr8_4:6845489-6845508 | None:intergenic | 25.0% |
| ! | TATGTATTGCATAATAGTGT+AGG | + | chr8_4:6845490-6845509 | None:intergenic | 25.0% |
| !!! | TATTAAGCACTGAAAACATA+AGG | + | chr8_4:6845534-6845553 | None:intergenic | 25.0% |
| ! | ATACTGGATATCAATGATAA+AGG | - | chr8_4:6845551-6845570 | Msa1310230:intron | 25.0% |
| ! | TACTGGATATCAATGATAAA+GGG | - | chr8_4:6845552-6845571 | Msa1310230:intron | 25.0% |
| ! | GCATCATAATAATTAATCAC+AGG | + | chr8_4:6845642-6845661 | None:intergenic | 25.0% |
| !!! | TGATTTACCTTCTCATTTTT+TGG | + | chr8_4:6845826-6845845 | None:intergenic | 25.0% |
| !! | GTTTTACAATGCATTATGAA+CGG | - | chr8_4:6846123-6846142 | Msa1310230:intron | 25.0% |
| ! | CCAAATATAAAACTAATTGC+CGG | - | chr8_4:6846306-6846325 | Msa1310230:intron | 25.0% |
| !!! | GTTTACTTTTTTAGCATCAA+TGG | - | chr8_4:6846539-6846558 | Msa1310230:intron | 25.0% |
| ! | CTAGTTAAGATGATTATCAA+AGG | + | chr8_4:6846868-6846887 | None:intergenic | 25.0% |
| !! | TTGATAATCATCTTAACTAG+TGG | - | chr8_4:6846868-6846887 | Msa1310230:intron | 25.0% |
| ! | TGATAATCATCTTAACTAGT+GGG | - | chr8_4:6846869-6846888 | Msa1310230:intron | 25.0% |
| ! | ACAAAAAAATATTACCGAGT+GGG | - | chr8_4:6846892-6846911 | Msa1310230:intron | 25.0% |
| !!! | TACTTTTAGAAGTAGAAATC+TGG | + | chr8_4:6847046-6847065 | None:intergenic | 25.0% |
| !! | AGTAAAGCATAGATTCTTTT+TGG | - | chr8_4:6847062-6847081 | Msa1310230:intron | 25.0% |
| !! | GTAAAGCATAGATTCTTTTT+GGG | - | chr8_4:6847063-6847082 | Msa1310230:intron | 25.0% |
| !! | TAAAGCATAGATTCTTTTTG+GGG | - | chr8_4:6847064-6847083 | Msa1310230:intron | 25.0% |
| !!! | TCCAATTTGTTACATAAGTT+TGG | - | chr8_4:6847257-6847276 | Msa1310230:intron | 25.0% |
| ! | ACCAAACTTATGTAACAAAT+TGG | + | chr8_4:6847261-6847280 | None:intergenic | 25.0% |
| !!! | TTATTTTACAAACCTAGTAG+TGG | + | chr8_4:6847327-6847346 | None:intergenic | 25.0% |
| ! | TTTATTATCTAGTGATGTGA+TGG | - | chr8_4:6847370-6847389 | Msa1310230:intron | 25.0% |
| ! | AAAGTTAGAAGCAAATGAAT+AGG | - | chr8_4:6847544-6847563 | Msa1310230:intron | 25.0% |
| ! | TGTGACCTGAAAAAAAAAAA+TGG | + | chr8_4:6847875-6847894 | None:intergenic | 25.0% |
| ! | ATATCTAGCAACAAAATATG+AGG | + | chr8_4:6847922-6847941 | None:intergenic | 25.0% |
| !! | TTGTTTGAGTTATTTAAGCA+CGG | - | chr8_4:6848027-6848046 | Msa1310230:five_prime_UTR | 25.0% |
| !!! | ATAGTAACGGCTTTATTTTC+GGG | + | chr8_4:6841721-6841740 | None:intergenic | 30.0% |
| !!! | GATAGTAACGGCTTTATTTT+CGG | + | chr8_4:6841722-6841741 | None:intergenic | 30.0% |
| !!! | GAAAGTTCGGTTTTTTTAGT+CGG | + | chr8_4:6841809-6841828 | None:intergenic | 30.0% |
| ! | GAGAAATTGTTGTTATGGTT+AGG | + | chr8_4:6841861-6841880 | None:intergenic | 30.0% |
| CATAACAGAGAAAAAAAGCA+TGG | + | chr8_4:6842010-6842029 | None:intergenic | 30.0% | |
| !! | TTTTCAACATTGATTAGGAG+TGG | - | chr8_4:6842135-6842154 | Msa1310230:intron | 30.0% |
| !! | ATGTGTTTGATTTGATGTTG+TGG | - | chr8_4:6842083-6842102 | Msa1310230:intron | 30.0% |
| !! | TTTTCACATTGATTAGGTAG+TGG | - | chr8_4:6842251-6842270 | Msa1310230:intron | 30.0% |
| AATTTCTCATTCTTCATACG+CGG | + | chr8_4:6842329-6842348 | None:intergenic | 30.0% | |
| !! | TTTTAACATTGATTAGGGAG+TGG | - | chr8_4:6842474-6842493 | Msa1310230:intron | 30.0% |
| !!! | GTGATTTTTTGAAATCCACA+TGG | - | chr8_4:6842520-6842539 | Msa1310230:intron | 30.0% |
| CAGTTCCATTTCTTATTCTT+AGG | + | chr8_4:6842555-6842574 | None:intergenic | 30.0% | |
| TAATGTCTGTGATATTGTTC+TGG | - | chr8_4:6842729-6842748 | Msa1310230:intron | 30.0% | |
| GTAATACCATTAACCAAATC+AGG | + | chr8_4:6842777-6842796 | None:intergenic | 30.0% | |
| ! | CTTTTGCTACCAATAAAAGA+AGG | + | chr8_4:6843003-6843022 | None:intergenic | 30.0% |
| TAGCGTAAAATGCTACTATA+CGG | + | chr8_4:6843220-6843239 | None:intergenic | 30.0% | |
| TTTACGCTATCAATATGTGA+CGG | - | chr8_4:6843231-6843250 | Msa1310230:intron | 30.0% | |
| ! | TTTTGTTGGACATTCTATCA+TGG | + | chr8_4:6843724-6843743 | None:intergenic | 30.0% |
| ATTGACACAATCTCACTAAT+AGG | + | chr8_4:6843837-6843856 | None:intergenic | 30.0% | |
| ATTCAAAGGTAAGATGACTA+TGG | + | chr8_4:6844122-6844141 | None:intergenic | 30.0% | |
| TTTACTAACAGCTCATTCAA+AGG | + | chr8_4:6844136-6844155 | None:intergenic | 30.0% | |
| AGTAAGATTAAAACAGCTTG+TGG | - | chr8_4:6844382-6844401 | Msa1310230:intron | 30.0% | |
| GTAAGATTAAAACAGCTTGT+GGG | - | chr8_4:6844383-6844402 | Msa1310230:intron | 30.0% | |
| !!! | TGTGTGTGTTTTGTTTTGAA+AGG | + | chr8_4:6844433-6844452 | None:intergenic | 30.0% |
| ATTTCAACTATGGATGCATT+TGG | + | chr8_4:6844493-6844512 | None:intergenic | 30.0% | |
| TAAGTTAAGTTTGCAATAGC+TGG | + | chr8_4:6844521-6844540 | None:intergenic | 30.0% | |
| GCTATTGCAAACTTAACTTA+AGG | - | chr8_4:6844521-6844540 | Msa1310230:CDS | 30.0% | |
| !! | AATAATGATAATGGTACAGG+TGG | - | chr8_4:6844698-6844717 | Msa1310230:intron | 30.0% |
| ! | CAAATGTTGTCGAACATTTT+GGG | - | chr8_4:6844750-6844769 | Msa1310230:intron | 30.0% |
| CTATAAACAATCAGTGAAAC+AGG | + | chr8_4:6844875-6844894 | None:intergenic | 30.0% | |
| !! | TAGTAAATGGCTAGCTTTAT+AGG | - | chr8_4:6844915-6844934 | Msa1310230:intron | 30.0% |
| !! | TCATTGTGCTGTTTAAAATC+AGG | + | chr8_4:6845122-6845141 | None:intergenic | 30.0% |
| GATGCATTTAGGAAATTAGA+AGG | + | chr8_4:6845365-6845384 | None:intergenic | 30.0% | |
| CTAATTTCCTAAATGCATCA+TGG | - | chr8_4:6845366-6845385 | Msa1310230:intron | 30.0% | |
| ! | ATGTTTTCAGTGCTTAATAC+TGG | - | chr8_4:6845535-6845554 | Msa1310230:intron | 30.0% |
| ACGACAACATTGAAACAATA+AGG | - | chr8_4:6845583-6845602 | Msa1310230:intron | 30.0% | |
| ! | GACATTACATTACCTGTTTT+AGG | - | chr8_4:6845744-6845763 | Msa1310230:intron | 30.0% |
| TTTCAGTCCAAAAAATGAGA+AGG | - | chr8_4:6845816-6845835 | Msa1310230:intron | 30.0% | |
| ACTGGCATAAACAAATTCAT+TGG | - | chr8_4:6846278-6846297 | Msa1310230:intron | 30.0% | |
| !!! | CCGGCAATTAGTTTTATATT+TGG | + | chr8_4:6846309-6846328 | None:intergenic | 30.0% |
| CCAACTGGTATAATTGTATT+CGG | - | chr8_4:6846404-6846423 | Msa1310230:exon | 30.0% | |
| ACTGTAAGAATTTACAGAAG+CGG | + | chr8_4:6846514-6846533 | None:intergenic | 30.0% | |
| ! | TTATGACTTGTCTGACAAAT+TGG | - | chr8_4:6846580-6846599 | Msa1310230:intron | 30.0% |
| CATAGATAAACATCAATTCC+TGG | + | chr8_4:6846722-6846741 | None:intergenic | 30.0% | |
| CAGGAATTGATGTTTATCTA+TGG | - | chr8_4:6846720-6846739 | Msa1310230:intron | 30.0% | |
| TGTTTATCTATGGTATTTGC+AGG | - | chr8_4:6846730-6846749 | Msa1310230:intron | 30.0% | |
| CAACAAAATACAGCAAAATG+CGG | + | chr8_4:6846839-6846858 | None:intergenic | 30.0% | |
| !! | TTTGCTGTATTTTGTTGTAG+AGG | - | chr8_4:6846842-6846861 | Msa1310230:intron | 30.0% |
| GACAAAAAAATATTACCGAG+TGG | - | chr8_4:6846891-6846910 | Msa1310230:intron | 30.0% | |
| TGTTAAGTACGAGAGAATTA+TGG | - | chr8_4:6846937-6846956 | Msa1310230:intron | 30.0% | |
| AGATGATATAAACTTCTACG+CGG | + | chr8_4:6847001-6847020 | None:intergenic | 30.0% | |
| TATCCAGGCATAAATAAGAA+AGG | + | chr8_4:6847094-6847113 | None:intergenic | 30.0% | |
| ! | TCTAAAGTTAGTACACAAGA+TGG | + | chr8_4:6847132-6847151 | None:intergenic | 30.0% |
| TACAATTCATATCAAACTGG+AGG | - | chr8_4:6847501-6847520 | Msa1310230:intron | 30.0% | |
| TATAAATGAATGAGTCGACA+AGG | + | chr8_4:6847997-6848016 | None:intergenic | 30.0% | |
| ! | TGTTTGAGTTATTTAAGCAC+GGG | - | chr8_4:6848028-6848047 | Msa1310230:five_prime_UTR | 30.0% |
| ! | ATCCCAACATTTTCAAATTC+TGG | - | chr8_4:6848058-6848077 | Msa1310230:five_prime_UTR | 30.0% |
| CTCCAGAATTTGAAAATGTT+GGG | + | chr8_4:6848063-6848082 | None:intergenic | 30.0% | |
| ACTCCAGAATTTGAAAATGT+TGG | + | chr8_4:6848064-6848083 | None:intergenic | 30.0% | |
| ! | TATGGAGTAATGGAAGGAAA+GGG | + | chr8_4:6841757-6841776 | None:intergenic | 35.0% |
| ! | ATTTCGTATGGAGTAATGGA+AGG | + | chr8_4:6841763-6841782 | None:intergenic | 35.0% |
| !!! | TTCGGTTTTTTTAGTCGGTA+GGG | + | chr8_4:6841804-6841823 | None:intergenic | 35.0% |
| AGATCTAACTGCAAACGAAA+CGG | + | chr8_4:6841968-6841987 | None:intergenic | 35.0% | |
| ! | CAGAGAAAAAAAGCATGGAT+CGG | + | chr8_4:6842005-6842024 | None:intergenic | 35.0% |
| !! | TTTGATTTGATGTTGTGGCA+TGG | - | chr8_4:6842204-6842223 | Msa1310230:intron | 35.0% |
| !!! | TGAAGTTTTGACTCCTGATT+TGG | - | chr8_4:6842761-6842780 | Msa1310230:intron | 35.0% |
| !! | TTGACTCCTGATTTGGTTAA+TGG | - | chr8_4:6842768-6842787 | Msa1310230:intron | 35.0% |
| TGTCTGCTTGATCTGTTAAT+TGG | - | chr8_4:6842849-6842868 | Msa1310230:intron | 35.0% | |
| GATTTAATATGATAGGCGGA+TGG | - | chr8_4:6842951-6842970 | Msa1310230:intron | 35.0% | |
| ! | TTTATTGGTAGCAAAAGTGC+AGG | - | chr8_4:6843006-6843025 | Msa1310230:three_prime_UTR | 35.0% |
| ! | TTTGTTCCCTCATTAAGTTG+CGG | - | chr8_4:6843168-6843187 | Msa1310230:intron | 35.0% |
| ! | AGTGTAGTTGCTATTACTCA+TGG | - | chr8_4:6843359-6843378 | Msa1310230:intron | 35.0% |
| ! | GTGTAGTTGCTATTACTCAT+GGG | - | chr8_4:6843360-6843379 | Msa1310230:intron | 35.0% |
| TGTTATTGAAGCTGCAAACA+AGG | - | chr8_4:6843386-6843405 | Msa1310230:intron | 35.0% | |
| GAATTATAGAATTTGGGTCC+CGG | - | chr8_4:6843530-6843549 | Msa1310230:intron | 35.0% | |
| AGTTGAATATCTTGTCGAGA+GGG | + | chr8_4:6844296-6844315 | None:intergenic | 35.0% | |
| !! | CTAGTTCTATAAGCTCTCAT+GGG | - | chr8_4:6844348-6844367 | Msa1310230:CDS | 35.0% |
| GCTGGTATACATTTCAACTA+TGG | + | chr8_4:6844503-6844522 | None:intergenic | 35.0% | |
| ACACAATAGAGACAGACAAA+TGG | + | chr8_4:6844614-6844633 | None:intergenic | 35.0% | |
| TTCGACAACATTTGCACATT+GGG | + | chr8_4:6844744-6844763 | None:intergenic | 35.0% | |
| ! | GCAAATGTTGTCGAACATTT+TGG | - | chr8_4:6844749-6844768 | Msa1310230:intron | 35.0% |
| AACAATAAGGAAGCGATTCA+AGG | - | chr8_4:6845596-6845615 | Msa1310230:intron | 35.0% | |
| !! | TTGTCTTTTCTCAAAAGCAC+AGG | + | chr8_4:6846339-6846358 | None:intergenic | 35.0% |
| !! | CTACTTTTCTTTGTACCAAC+TGG | - | chr8_4:6846389-6846408 | Msa1310230:CDS | 35.0% |
| CCGAATACAATTATACCAGT+TGG | + | chr8_4:6846407-6846426 | None:intergenic | 35.0% | |
| ! | ATTTTGTACCTTCCTAGTGT+TGG | + | chr8_4:6846451-6846470 | None:intergenic | 35.0% |
| TTGGAACTTCCTTAGAATAC+AGG | - | chr8_4:6846599-6846618 | Msa1310230:intron | 35.0% | |
| TCAATTCCTGGAAAACATTG+CGG | + | chr8_4:6846710-6846729 | None:intergenic | 35.0% | |
| !!! | GTTTTTTCATATCACCCACT+CGG | + | chr8_4:6846909-6846928 | None:intergenic | 35.0% |
| AGTACGAGAGAATTATGGTT+AGG | - | chr8_4:6846942-6846961 | Msa1310230:intron | 35.0% | |
| ATAAACTTCTACGCGGAATT+GGG | + | chr8_4:6846994-6847013 | None:intergenic | 35.0% | |
| TATAAACTTCTACGCGGAAT+TGG | + | chr8_4:6846995-6847014 | None:intergenic | 35.0% | |
| ! | GAACCTTTCTTATTTATGCC+TGG | - | chr8_4:6847088-6847107 | Msa1310230:intron | 35.0% |
| TTTCTTTACAAGCCACTACT+AGG | - | chr8_4:6847312-6847331 | Msa1310230:intron | 35.0% | |
| !!! | TTTTCAGGTCACATTAGTGT+TGG | - | chr8_4:6847882-6847901 | Msa1310230:five_prime_UTR | 35.0% |
| GGTGCAACAATAGAATATAG+AGG | + | chr8_4:6847976-6847995 | None:intergenic | 35.0% | |
| ! | GTATGGAGTAATGGAAGGAA+AGG | + | chr8_4:6841758-6841777 | None:intergenic | 40.0% |
| TTAGTCGGTAGGGGTTAAAT+GGG | + | chr8_4:6841794-6841813 | None:intergenic | 40.0% | |
| TTTAGTCGGTAGGGGTTAAA+TGG | + | chr8_4:6841795-6841814 | None:intergenic | 40.0% | |
| !!! | TCGGTTTTTTTAGTCGGTAG+GGG | + | chr8_4:6841803-6841822 | None:intergenic | 40.0% |
| !!! | GTTCGGTTTTTTTAGTCGGT+AGG | + | chr8_4:6841805-6841824 | None:intergenic | 40.0% |
| GTTATGGTTAGGATCGTTGA+AGG | + | chr8_4:6841850-6841869 | None:intergenic | 40.0% | |
| TGTTGCTGTGTTCGATGAAT+TGG | - | chr8_4:6842098-6842117 | Msa1310230:intron | 40.0% | |
| GTGTTTGATGTTGCTGAGTA+CGG | - | chr8_4:6842429-6842448 | Msa1310230:intron | 40.0% | |
| CTTAGGCAATATCAACCATG+TGG | + | chr8_4:6842538-6842557 | None:intergenic | 40.0% | |
| GTTAATGGTATTACCTTGCG+TGG | - | chr8_4:6842783-6842802 | Msa1310230:intron | 40.0% | |
| CTGCTTGATCTGTTAATTGG+TGG | - | chr8_4:6842852-6842871 | Msa1310230:intron | 40.0% | |
| CATTTCGTGCTAGCTGAATT+TGG | - | chr8_4:6842879-6842898 | Msa1310230:intron | 40.0% | |
| ! | AGCTGCAAACAAGGTATTCA+TGG | - | chr8_4:6843395-6843414 | Msa1310230:intron | 40.0% |
| TGAGCATAGCTCATTTGGAA+GGG | - | chr8_4:6843553-6843572 | Msa1310230:intron | 40.0% | |
| AAGCATTATCCCACTAATCG+GGG | + | chr8_4:6843798-6843817 | None:intergenic | 40.0% | |
| CAAGCATTATCCCACTAATC+GGG | + | chr8_4:6843799-6843818 | None:intergenic | 40.0% | |
| CCAAGCATTATCCCACTAAT+CGG | + | chr8_4:6843800-6843819 | None:intergenic | 40.0% | |
| GATAATGCTTGGTTGTGTTG+TGG | - | chr8_4:6843808-6843827 | Msa1310230:intron | 40.0% | |
| CCTAACACAAACACAACTGT+AGG | + | chr8_4:6844082-6844101 | None:intergenic | 40.0% | |
| CCTACAGTTGTGTTTGTGTT+AGG | - | chr8_4:6844079-6844098 | Msa1310230:intron | 40.0% | |
| CAGTTGAATATCTTGTCGAG+AGG | + | chr8_4:6844297-6844316 | None:intergenic | 40.0% | |
| !! | GCTAGTTCTATAAGCTCTCA+TGG | - | chr8_4:6844347-6844366 | Msa1310230:CDS | 40.0% |
| GTTCGACAACATTTGCACAT+TGG | + | chr8_4:6844745-6844764 | None:intergenic | 40.0% | |
| ! | ATCAAATCTGGCTCCGAAAA+TGG | - | chr8_4:6844812-6844831 | Msa1310230:intron | 40.0% |
| ! | TCAAATCTGGCTCCGAAAAT+GGG | - | chr8_4:6844813-6844832 | Msa1310230:intron | 40.0% |
| CAATCAGTGAAACAGGACTA+CGG | + | chr8_4:6844868-6844887 | None:intergenic | 40.0% | |
| AGGAAAAATTGTTCCTTCCG+AGG | - | chr8_4:6845161-6845180 | Msa1310230:intron | 40.0% | |
| TTCCTTCCGAGGTAACAATT+AGG | - | chr8_4:6845172-6845191 | Msa1310230:intron | 40.0% | |
| CAGAAGCCTAATTGTTACCT+CGG | + | chr8_4:6845181-6845200 | None:intergenic | 40.0% | |
| GGTAGTACATTTATCTGCTC+AGG | + | chr8_4:6845344-6845363 | None:intergenic | 40.0% | |
| TGCAAAGCCATGATGCATTT+AGG | + | chr8_4:6845376-6845395 | None:intergenic | 40.0% | |
| CCTCTGGGCAATCAAAATAT+AGG | + | chr8_4:6845423-6845442 | None:intergenic | 40.0% | |
| !!! | CCTATATTTTGATTGCCCAG+AGG | - | chr8_4:6845420-6845439 | Msa1310230:intron | 40.0% |
| ATAGTGTAGGGTCTATTACC+TGG | + | chr8_4:6845477-6845496 | None:intergenic | 40.0% | |
| ! | GTTGTGTTTCTACCATGTCT+TGG | - | chr8_4:6845691-6845710 | Msa1310230:CDS | 40.0% |
| ACAAGAAACTCACCAAGACA+TGG | + | chr8_4:6845706-6845725 | None:intergenic | 40.0% | |
| TTGTTTGCCTCATGTGCTAA+AGG | - | chr8_4:6845722-6845741 | Msa1310230:intron | 40.0% | |
| GTAATGTCCTTTAGCACATG+AGG | + | chr8_4:6845732-6845751 | None:intergenic | 40.0% | |
| TTGCAGCATCAACCTAAAAC+AGG | + | chr8_4:6845759-6845778 | None:intergenic | 40.0% | |
| !!! | TGTTTTAGGTTGATGCTGCA+AGG | - | chr8_4:6845758-6845777 | Msa1310230:intron | 40.0% |
| !! | TGTTGAGGAGGTATTTGAGT+CGG | - | chr8_4:6845783-6845802 | Msa1310230:intron | 40.0% |
| ! | TTCAAACCGCAATGTTTTCC+AGG | - | chr8_4:6846701-6846720 | Msa1310230:intron | 40.0% |
| AATATCCAGCACGCAATCAA+GGG | + | chr8_4:6846772-6846791 | None:intergenic | 40.0% | |
| AAATATCCAGCACGCAATCA+AGG | + | chr8_4:6846773-6846792 | None:intergenic | 40.0% | |
| TTGCGTGCTGGATATTTAAG+AGG | - | chr8_4:6846776-6846795 | Msa1310230:intron | 40.0% | |
| ACGAGAGAATTATGGTTAGG+AGG | - | chr8_4:6846945-6846964 | Msa1310230:intron | 40.0% | |
| TTGAACGTGTCATCTTATCC+AGG | + | chr8_4:6847109-6847128 | None:intergenic | 40.0% | |
| ! | GGAGGTGATGTTGAAACTTT+TGG | - | chr8_4:6847519-6847538 | Msa1310230:intron | 40.0% |
| AATATAGAGGCAACAACCTC+AGG | + | chr8_4:6847963-6847982 | None:intergenic | 40.0% | |
| AGGTGGTTGCGTGATAGTAA+CGG | + | chr8_4:6841734-6841753 | None:intergenic | 45.0% | |
| ! | GAAAGCGCGAAAACGTGAAT+TGG | + | chr8_4:6841946-6841965 | None:intergenic | 45.0% |
| TTTGATGTTGCTGAGTACGG+AGG | - | chr8_4:6842432-6842451 | Msa1310230:intron | 45.0% | |
| CGCATGCACGAAATCAAACA+CGG | + | chr8_4:6842644-6842663 | None:intergenic | 45.0% | |
| GTATTACCTTGCGTGGCATT+TGG | - | chr8_4:6842790-6842809 | Msa1310230:intron | 45.0% | |
| ! | TCCCTCATTAAGTTGCGGTT+TGG | - | chr8_4:6843173-6843192 | Msa1310230:intron | 45.0% |
| GCCAAACCGCAACTTAATGA+GGG | + | chr8_4:6843177-6843196 | None:intergenic | 45.0% | |
| TGCCAAACCGCAACTTAATG+AGG | + | chr8_4:6843178-6843197 | None:intergenic | 45.0% | |
| ! | TGCGGTTTGGCATTAGTGAA+AGG | - | chr8_4:6843186-6843205 | Msa1310230:intron | 45.0% |
| TCCAAATGAGCTATGCTCAC+CGG | + | chr8_4:6843552-6843571 | None:intergenic | 45.0% | |
| GTGAGCATAGCTCATTTGGA+AGG | - | chr8_4:6843552-6843571 | Msa1310230:intron | 45.0% | |
| TTTGCGGTCAAATAGCCTAG+TGG | + | chr8_4:6843651-6843670 | None:intergenic | 45.0% | |
| CTAATCGGGGTCAGTACTAT+AGG | + | chr8_4:6843785-6843804 | None:intergenic | 45.0% | |
| !! | ATAGTACTGACCCCGATTAG+TGG | - | chr8_4:6843785-6843804 | Msa1310230:intron | 45.0% |
| !! | TAGTACTGACCCCGATTAGT+GGG | - | chr8_4:6843786-6843805 | Msa1310230:intron | 45.0% |
| CCGATTAGTGGGATAATGCT+TGG | - | chr8_4:6843797-6843816 | Msa1310230:intron | 45.0% | |
| ! | AGCTCTCATGGGAAGCTTTT+TGG | - | chr8_4:6844359-6844378 | Msa1310230:CDS | 45.0% |
| !! | TGATAATGGTACAGGTGGTC+CGG | - | chr8_4:6844703-6844722 | Msa1310230:intron | 45.0% |
| ! | ATTTGATTTCCGCTCGCAGA+AGG | + | chr8_4:6844799-6844818 | None:intergenic | 45.0% |
| GGACTACGGATCTATCACTA+AGG | + | chr8_4:6844854-6844873 | None:intergenic | 45.0% | |
| CAATGCTCAGAAGTTGACGT+TGG | + | chr8_4:6845035-6845054 | None:intergenic | 45.0% | |
| CAGCTTAAACTCGATGCAGA+TGG | + | chr8_4:6845069-6845088 | None:intergenic | 45.0% | |
| AGCCTAATTGTTACCTCGGA+AGG | + | chr8_4:6845177-6845196 | None:intergenic | 45.0% | |
| CAACAAGCAATGCAAGACAG+TGG | - | chr8_4:6845201-6845220 | Msa1310230:intron | 45.0% | |
| ! | TGATGGTTTTCCTCGCAATG+AGG | - | chr8_4:6845242-6845261 | Msa1310230:intron | 45.0% |
| TGATTGCCCAGAGGAAGAAA+TGG | - | chr8_4:6845429-6845448 | Msa1310230:intron | 45.0% | |
| GTCTCTCCATTTCTTCCTCT+GGG | + | chr8_4:6845438-6845457 | None:intergenic | 45.0% | |
| TGGAGAGACGACTTCTTAGT+AGG | - | chr8_4:6845449-6845468 | Msa1310230:intron | 45.0% | |
| ACGACTTCTTAGTAGGAACC+AGG | - | chr8_4:6845456-6845475 | Msa1310230:intron | 45.0% | |
| TGCAAAGGGAAAAGTTCGCA+AGG | - | chr8_4:6845659-6845678 | Msa1310230:intron | 45.0% | |
| GACTCAAATACCTCCTCAAC+AGG | + | chr8_4:6845784-6845803 | None:intergenic | 45.0% | |
| GGCTTGATACACACAAGTCT+AGG | + | chr8_4:6846430-6846449 | None:intergenic | 45.0% | |
| GTGTGTATCAAGCCAACACT+AGG | - | chr8_4:6846436-6846455 | Msa1310230:intron | 45.0% | |
| GTATCAAGCCAACACTAGGA+AGG | - | chr8_4:6846440-6846459 | Msa1310230:intron | 45.0% | |
| TGTGCTTGGCCTGTATTCTA+AGG | + | chr8_4:6846611-6846630 | None:intergenic | 45.0% | |
| TATGGTTAGGAGGTGAGCAA+TGG | - | chr8_4:6846955-6846974 | Msa1310230:intron | 45.0% | |
| ATGGTTAGGAGGTGAGCAAT+GGG | - | chr8_4:6846956-6846975 | Msa1310230:intron | 45.0% | |
| ! | AAAGAAAGGCACGTGACTGA+TGG | - | chr8_4:6847213-6847232 | Msa1310230:intron | 45.0% |
| AGTGTGTAAGTGCCCTTTGT+GGG | - | chr8_4:6848081-6848100 | Msa1310230:five_prime_UTR | 45.0% | |
| GTCCACTACAAACCCACAAA+GGG | + | chr8_4:6848096-6848115 | None:intergenic | 45.0% | |
| !! | AAAAAAAGAATTATATAATT+TGG | - | chr8_4:6843671-6843690 | Msa1310230:intron | 5.0% |
| !!! | TTTAAAAAAATATTTTTTGT+TGG | + | chr8_4:6843738-6843757 | None:intergenic | 5.0% |
| !!! | TTTTAAAGAATTAAATAATA+TGG | - | chr8_4:6843751-6843770 | Msa1310230:intron | 5.0% |
| ! | GTAATGGAAGGAAAGGGAGG+TGG | + | chr8_4:6841751-6841770 | None:intergenic | 50.0% |
| ! | GGAGTAATGGAAGGAAAGGG+AGG | + | chr8_4:6841754-6841773 | None:intergenic | 50.0% |
| TCTCTCCTCTTTCGCGCAAA+AGG | - | chr8_4:6841896-6841915 | Msa1310230:intron | 50.0% | |
| ! | CGTTACCTTTTGCGCGAAAG+AGG | + | chr8_4:6841904-6841923 | None:intergenic | 50.0% |
| CTTTCACCAAATGCCACGCA+AGG | + | chr8_4:6842799-6842818 | None:intergenic | 50.0% | |
| CCAAATGAGCTATGCTCACC+GGG | + | chr8_4:6843551-6843570 | None:intergenic | 50.0% | |
| GCATTGCAGTATGCAGGTGT+CGG | - | chr8_4:6843575-6843594 | Msa1310230:intron | 50.0% | |
| CATTGCAGTATGCAGGTGTC+GGG | - | chr8_4:6843576-6843595 | Msa1310230:intron | 50.0% | |
| ! | ATTGCAGTATGCAGGTGTCG+GGG | - | chr8_4:6843577-6843596 | Msa1310230:intron | 50.0% |
| AGCTGAATGAGCGAGGAATC+CGG | + | chr8_4:6843610-6843629 | None:intergenic | 50.0% | |
| CCTCGCTCATTCAGCTTAAG+CGG | - | chr8_4:6843614-6843633 | Msa1310230:intron | 50.0% | |
| !! | GCGGTGAATTTCTAGCCACT+AGG | - | chr8_4:6843633-6843652 | Msa1310230:intron | 50.0% |
| ! | GATAATGGTACAGGTGGTCC+GGG | - | chr8_4:6844704-6844723 | Msa1310230:intron | 50.0% |
| CTGCGAGCGGAAATCAAATC+TGG | - | chr8_4:6844800-6844819 | Msa1310230:intron | 50.0% | |
| CTCAGAAGTTGACGTTGGTC+AGG | + | chr8_4:6845030-6845049 | None:intergenic | 50.0% | |
| CCACTCTCTCAAATGCTGCA+CGG | + | chr8_4:6845272-6845291 | None:intergenic | 50.0% | |
| ! | TGCATCATGGCTTTGCAGAC+TGG | - | chr8_4:6845379-6845398 | Msa1310230:intron | 50.0% |
| CGTCTCTCCATTTCTTCCTC+TGG | + | chr8_4:6845439-6845458 | None:intergenic | 50.0% | |
| ! | CAAAAGCACAGGTTGTGAGC+CGG | + | chr8_4:6846328-6846347 | None:intergenic | 50.0% |
| GAGTGTGTAAGTGCCCTTTG+TGG | - | chr8_4:6848080-6848099 | Msa1310230:five_prime_UTR | 50.0% | |
| TGCCCTTTGTGGGTTTGTAG+TGG | - | chr8_4:6848091-6848110 | Msa1310230:five_prime_UTR | 50.0% | |
| GGTCCACTACAAACCCACAA+AGG | + | chr8_4:6848097-6848116 | None:intergenic | 50.0% | |
| CCCGGTGAGCATAGCTCATT+TGG | - | chr8_4:6843548-6843567 | Msa1310230:intron | 55.0% | |
| !! | GGAAGGGCATTGCAGTATGC+AGG | - | chr8_4:6843569-6843588 | Msa1310230:intron | 55.0% |
| GCTGAATGAGCGAGGAATCC+GGG | + | chr8_4:6843609-6843628 | None:intergenic | 55.0% | |
| CCGCTTAAGCTGAATGAGCG+AGG | + | chr8_4:6843617-6843636 | None:intergenic | 55.0% | |
| ! | TGGGTACCTTTTCCACTGCC+CGG | + | chr8_4:6844725-6844744 | None:intergenic | 55.0% |
| GGGTTTACTCACCTCAGTGC+TGG | - | chr8_4:6844770-6844789 | Msa1310230:intron | 55.0% | |
| ! | GCACGGTTTTCCTCATTGCG+AGG | + | chr8_4:6845255-6845274 | None:intergenic | 55.0% |
| CCGTGCAGCATTTGAGAGAG+TGG | - | chr8_4:6845269-6845288 | Msa1310230:intron | 55.0% | |
| TGATGCTGCAAGGCCTGTTG+AGG | - | chr8_4:6845768-6845787 | Msa1310230:intron | 55.0% | |
| TGTTGCCCTTGATTGCGTGC+TGG | - | chr8_4:6846764-6846783 | Msa1310230:intron | 55.0% | |
| GCAGAAGGTCACCAGCACTG+AGG | + | chr8_4:6844784-6844803 | None:intergenic | 60.0% | |
| TGCTGGTGACCTTCTGCGAG+CGG | - | chr8_4:6844787-6844806 | Msa1310230:intron | 60.0% | |
| TGCTGCAAGGCCTGTTGAGG+AGG | - | chr8_4:6845771-6845790 | Msa1310230:intron | 60.0% | |
| !! | CAGGTGTCGGGGTTCGAACC+CGG | - | chr8_4:6843588-6843607 | Msa1310230:intron | 65.0% |
| GGTGGTCCGGGCAGTGGAAA+AGG | - | chr8_4:6844716-6844735 | Msa1310230:intron | 65.0% | |
| GGTACAGGTGGTCCGGGCAG+TGG | - | chr8_4:6844710-6844729 | Msa1310230:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 6841625 | 6848163 | 6841625 | ID=Msa1310230;Name=Msa1310230 |
| chr8_4 | mRNA | 6841625 | 6848163 | 6841625 | ID=Msa1310230-mRNA-1;Parent=Msa1310230;Name=Msa1310230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=320|1|1|1|0.77|0.7|10|312|208 |
| chr8_4 | exon | 6841625 | 6841899 | 6841625 | ID=Msa1310230-mRNA-1:exon:2351;Parent=Msa1310230-mRNA-1 |
| chr8_4 | exon | 6842991 | 6843036 | 6842991 | ID=Msa1310230-mRNA-1:exon:2350;Parent=Msa1310230-mRNA-1 |
| chr8_4 | exon | 6843951 | 6844022 | 6843951 | ID=Msa1310230-mRNA-1:exon:2349;Parent=Msa1310230-mRNA-1 |
| chr8_4 | exon | 6844108 | 6844215 | 6844108 | ID=Msa1310230-mRNA-1:exon:2348;Parent=Msa1310230-mRNA-1 |
| chr8_4 | exon | 6844311 | 6844391 | 6844311 | ID=Msa1310230-mRNA-1:exon:2347;Parent=Msa1310230-mRNA-1 |
| chr8_4 | exon | 6844498 | 6844654 | 6844498 | ID=Msa1310230-mRNA-1:exon:2346;Parent=Msa1310230-mRNA-1 |
| chr8_4 | exon | 6844954 | 6845071 | 6844954 | ID=Msa1310230-mRNA-1:exon:2345;Parent=Msa1310230-mRNA-1 |
| chr8_4 | exon | 6845688 | 6845739 | 6845688 | ID=Msa1310230-mRNA-1:exon:2344;Parent=Msa1310230-mRNA-1 |
| chr8_4 | exon | 6846381 | 6846437 | 6846381 | ID=Msa1310230-mRNA-1:exon:2343;Parent=Msa1310230-mRNA-1 |
| chr8_4 | exon | 6847871 | 6848163 | 6847871 | ID=Msa1310230-mRNA-1:exon:2342;Parent=Msa1310230-mRNA-1 |
| chr8_4 | five_prime_UTR | 6847871 | 6848163 | 6847871 | ID=Msa1310230-mRNA-1:five_prime_utr;Parent=Msa1310230-mRNA-1 |
| chr8_4 | five_prime_UTR | 6846411 | 6846437 | 6846411 | ID=Msa1310230-mRNA-1:five_prime_utr;Parent=Msa1310230-mRNA-1 |
| chr8_4 | CDS | 6846381 | 6846410 | 6846381 | ID=Msa1310230-mRNA-1:cds;Parent=Msa1310230-mRNA-1 |
| chr8_4 | CDS | 6845688 | 6845739 | 6845688 | ID=Msa1310230-mRNA-1:cds;Parent=Msa1310230-mRNA-1 |
| chr8_4 | CDS | 6844954 | 6845071 | 6844954 | ID=Msa1310230-mRNA-1:cds;Parent=Msa1310230-mRNA-1 |
| chr8_4 | CDS | 6844498 | 6844654 | 6844498 | ID=Msa1310230-mRNA-1:cds;Parent=Msa1310230-mRNA-1 |
| chr8_4 | CDS | 6844311 | 6844391 | 6844311 | ID=Msa1310230-mRNA-1:cds;Parent=Msa1310230-mRNA-1 |
| chr8_4 | CDS | 6844108 | 6844215 | 6844108 | ID=Msa1310230-mRNA-1:cds;Parent=Msa1310230-mRNA-1 |
| chr8_4 | CDS | 6843951 | 6844022 | 6843951 | ID=Msa1310230-mRNA-1:cds;Parent=Msa1310230-mRNA-1 |
| chr8_4 | CDS | 6843028 | 6843036 | 6843028 | ID=Msa1310230-mRNA-1:cds;Parent=Msa1310230-mRNA-1 |
| chr8_4 | three_prime_UTR | 6842991 | 6843027 | 6842991 | ID=Msa1310230-mRNA-1:three_prime_utr;Parent=Msa1310230-mRNA-1 |
| chr8_4 | three_prime_UTR | 6841625 | 6841899 | 6841625 | ID=Msa1310230-mRNA-1:three_prime_utr;Parent=Msa1310230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
