AlfalfaGEDB | Msa1281610

M. sativa cultivar zhongmu-4 / Msa1281610

KEGG: K10685
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008641 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016874 GO:0016877 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0019948 GO:0022414 GO:0030054 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055044 GO:0061458 GO:0070647 GO:0071704 GO:1901564
PFAM: PF00899.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281610	sp\|Q9SJT1\|SAE2_ARATH	75.763	524	104	2	4	504	8	531	0.0	838

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281610	A0A072TPF5	95.276	635	8	1	1	613	1	635	0.0	1235

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014830	Msa1281610	0.805516	1.285591e-49	-8.615850e-47
Msa0439890	Msa1281610	0.810683	1.020147e-50	-8.615850e-47
Msa0462880	Msa1281610	0.810884	9.232920e-51	-8.615850e-47
Msa0549790	Msa1281610	0.824621	7.310832e-54	-8.615850e-47
Msa0610090	Msa1281610	0.804256	2.357370e-49	-8.615850e-47
Msa0658480	Msa1281610	0.810788	9.685125e-51	-8.615850e-47
Msa1240340	Msa1281610	0.828434	9.008788e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281610	MtrunA17_Chr8g0352371	95.276	635	8	1	1	613	1	635	0.0	1235
Msa1281610	MtrunA17_Chr4g0074481	41.711	187	92	3	9	180	48	232	1.48e-39	150
Msa1281610	MtrunA17_Chr0c01g0489601	29.139	453	254	14	6	405	210	648	1.75e-36	145
Msa1281610	MtrunA17_Chr5g0431171	40.217	184	102	2	6	181	493	676	5.96e-33	135
Msa1281610	MtrunA17_Chr5g0431151	40.659	182	100	2	8	181	496	677	1.79e-30	127
Msa1281610	MtrunA17_Chr5g0444711	28.105	153	108	2	9	160	91	242	1.22e-19	92.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281610	AT2G21470.1	69.952	619	146	6	4	599	8	609	0.0	870
Msa1281610	AT2G21470.3	69.614	622	146	7	4	599	8	612	0.0	865
Msa1281610	AT2G21470.2	75.763	524	104	2	4	504	8	531	0.0	838
Msa1281610	AT5G19180.1	37.981	208	111	4	6	197	43	248	3.26e-39	150
Msa1281610	AT5G19180.2	37.981	208	111	4	6	197	43	248	3.58e-39	149
Msa1281610	AT5G06460.1	39.674	184	103	2	6	181	487	670	4.00e-32	133
Msa1281610	AT2G30110.1	40.761	184	101	2	6	181	490	673	6.76e-30	126
Msa1281610	AT5G55130.1	29.560	159	109	3	3	160	87	243	3.87e-18	88.2
Msa1281610	AT1G05350.1	28.235	170	96	4	6	154	80	244	5.08e-14	75.1
Msa1281610	AT5G55130.2	26.950	141	99	3	23	160	77	216	1.76e-12	70.1

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Find 124 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTTGATCACGTATT+TGG	0.071426	8_3:-21300671	Msa1281610:CDS
AAAATGACATTAAAAGTTAT+AGG	0.357518	8_3:-21300067	Msa1281610:intron
AAAATTTATGAGAGAGAAAG+AGG	0.428612	8_3:+21304252	None:intergenic
AAACACTCTGCTTATGCCAG+TGG	0.641266	8_3:-21298972	Msa1281610:CDS
AAACCAACACATACCTTTGA+TGG	0.425453	8_3:+21301215	None:intergenic
AAAGTTCTCATGGTTGGTGC+TGG	0.510374	8_3:-21304068	Msa1281610:CDS
AAATATTTGATCACGTATTT+GGG	0.339346	8_3:-21300670	Msa1281610:CDS
AAATTTATGAGAGAGAAAGA+GGG	0.580793	8_3:+21304253	None:intergenic
AACATACGTGCTGCTTCATT+TGG	0.360112	8_3:-21300209	Msa1281610:CDS
AACCAACACATACCTTTGAT+GGG	0.507387	8_3:+21301216	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCACAAATCAGATCAAAA+GGG	+	chr8_3:21297373-21297392	None:intergenic	30.0%
ATTTAGTACATGTTTGGTTG+TGG	-	chr8_3:21297598-21297617	Msa1281610:intron	30.0%
ATTAACCCTGTTATTATTGG+GGG	-	chr8_3:21297719-21297738	Msa1281610:intron	30.0%
CGGTTCAGTTATTAAAACAT+TGG	+	chr8_3:21297751-21297770	None:intergenic	30.0%
ATGGTTCAACAACTTTAACT+CGG	-	chr8_3:21297796-21297815	Msa1281610:intron	30.0%
CAATGATTTAAAAACCAACC+CGG	+	chr8_3:21297907-21297926	None:intergenic	30.0%
ACAATTAAATTACCTGACCA+AGG	+	chr8_3:21298648-21298667	None:intergenic	30.0%
TAGATAATCAATCTTTCGAG+TGG	-	chr8_3:21298905-21298924	Msa1281610:intron	30.0%
ATAGAAACAGTATGAAGAAG+AGG	+	chr8_3:21299410-21299429	None:intergenic	30.0%
CATAGAACATATGATGCAAT+AGG	-	chr8_3:21299839-21299858	Msa1281610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	21296742	21304283	21296742	ID=Msa1281610;Name=Msa1281610
chr8_3	mRNA	21296742	21304283	21296742	ID=Msa1281610-mRNA-1;Parent=Msa1281610;Name=Msa1281610-mRNA-1;_AED=0.12;_eAED=0.12;_QI=83\|0.9\|0.90\|1\|1\|1\|11\|340\|613
chr8_3	exon	21296742	21297412	21296742	ID=Msa1281610-mRNA-1:exon:7796;Parent=Msa1281610-mRNA-1
chr8_3	exon	21297549	21297580	21297549	ID=Msa1281610-mRNA-1:exon:7795;Parent=Msa1281610-mRNA-1
chr8_3	exon	21298662	21298841	21298662	ID=Msa1281610-mRNA-1:exon:7794;Parent=Msa1281610-mRNA-1
chr8_3	exon	21298931	21299024	21298931	ID=Msa1281610-mRNA-1:exon:7793;Parent=Msa1281610-mRNA-1
chr8_3	exon	21300068	21300297	21300068	ID=Msa1281610-mRNA-1:exon:7792;Parent=Msa1281610-mRNA-1
chr8_3	exon	21300406	21300864	21300406	ID=Msa1281610-mRNA-1:exon:7791;Parent=Msa1281610-mRNA-1
chr8_3	exon	21301229	21301330	21301229	ID=Msa1281610-mRNA-1:exon:7790;Parent=Msa1281610-mRNA-1
chr8_3	exon	21302371	21302589	21302371	ID=Msa1281610-mRNA-1:exon:7789;Parent=Msa1281610-mRNA-1
chr8_3	exon	21302669	21302752	21302669	ID=Msa1281610-mRNA-1:exon:7788;Parent=Msa1281610-mRNA-1
chr8_3	exon	21304007	21304096	21304007	ID=Msa1281610-mRNA-1:exon:7787;Parent=Msa1281610-mRNA-1
chr8_3	exon	21304180	21304283	21304180	ID=Msa1281610-mRNA-1:exon:7786;Parent=Msa1281610-mRNA-1
chr8_3	five_prime_UTR	21304201	21304283	21304201	ID=Msa1281610-mRNA-1:five_prime_utr;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21304180	21304200	21304180	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21304007	21304096	21304007	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21302669	21302752	21302669	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21302371	21302589	21302371	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21301229	21301330	21301229	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21300406	21300864	21300406	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21300068	21300297	21300068	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21298931	21299024	21298931	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21298662	21298841	21298662	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21297549	21297580	21297549	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	CDS	21297082	21297412	21297082	ID=Msa1281610-mRNA-1:cds;Parent=Msa1281610-mRNA-1
chr8_3	three_prime_UTR	21296742	21297081	21296742	ID=Msa1281610-mRNA-1:three_prime_utr;Parent=Msa1281610-mRNA-1

Gene Sequence

>Msa1281610

ATGGCTTCTTCCATTATCAAAGATGCAAAAGTTCTCATGGTTGGTGCTGGTGGAATTGGTTGCGAGCTTCTGAAAACTCTTGCTCTCTCTGGCTTCTCTGACATACACATCATTGACATGGACACTATAGAAGTCAGTAACCTGAACAGACAGTTTTTGTTTCGACAATCCCATGTTGGGCAGTCCAAGGCTAAAGTTGCTAGGGATGCTGTTTTAAAATTTAGGCCCAAGATAAACATCACATCATATCATGCAAATGTCAAAGATCCTGATTTCAATGTGGACTTCTTTAAGCAATTTAATGTTGTTCTTAATGGGCTGGACAACCTAGATGCACGGCGACATGTGAATCGTTTGTGCTTGGCAGCTGATGTTCCTTTAGTTGAAAGTGGAACTACTGGGTTCCTTGGTCAGGTTACAGTTCATGTCAAAGGAAGAACAGAGTGCTATGAGTGTCAGCCTAAACCAGCTCCAAAGACATATCCAGTCTGTACTATCACAAGTACCCCATCAAAGTTTGTTCACTGTATTGTGTGGGCAAAAGAACTACTATTTTCTAAGTTATTTGGCGACAAAAATCAAGACAATGATTTAAATGTTCGCTCAAGCGATGCTGCCAGCTCATCAAAAAACATAGAGGATATATTTGAACATAGCAAAGATGAAGACATCAGTCAATATGGAAAGAAAATATTTGATCACGTATTTGGGTATAATATTGAATTAGCTTTGTCCAATGAGGAGACATGGAAAAATCGAAATAGACCTAAACCTATATACAGCAAGGATGTCCTGTCTGATGAATTGGATAAACAGAATGGAAATCTGGACAATGATAATGCTTGTGGCGATGGATTTTCAGTTTCTGCCATGTCATCTTTGGGCATGAAGAACCCGCAAGATATCTGGAGTCTTAGAGAAAATGCTAGAGTATTTCTCGAAGCATTGAGACTATTTTTCACAAAAAGAGAAAAGGATATTGGCAATCTGAGCTTTGATAAAGATGACCAGTTGGCTGTAGAATTTGTTACTGCAGCTGCAAACATACGTGCTGCTTCATTTGGCATACCTTTACATAGTCTTTTTGAAGCTAAAGGAATTGCTGGTAACATTGTGCATGCTGTGGCGACAACAAATGCTGTTATTGCTGGTTTGATTGTCATTGAAGCCATCAAGGTGCTGAAAAATGACATTAAAAGTTATAGAATGACATATTGTCTGGAACATCCAGCAAGAAACACTCTGCTTATGCCAGTGGAGCCATTTGAGCCTAACAAATCATGTTATGTTTGTTCTGAGAGTCCTGTATTGCTTGAAATAAACACAAACCGTTCAAAGTTGAAGGATGTTGTCGAAAAGATCATCAAGGCTAAGCTTGGGATGAGCCTTCCACTTGTCATGAATGCTTCAAACCTCCTCTATGAAGCTGGTGATATTGAGGATGACATGGTTGCAATTTATAATGCCAACCTTGAAAAGGAATTGAAGTGCAACATTAACATAAAGCACAGAGAGGAATTTGATGAAGAGAAAGAACCCGATGGTATGGTTCTCTCAGGATGGACTCAACCAGCTGCAGCTGCAGAAAATGAAGACAAATCTGTTAGTAACGGTGCAAGCACCTCAGACGCACCAATAACAGCAGTAGAAAAATCTGAAAATGATGATGATGTTGGTATAATTTCTCCGGTGAAGAAAAGAAAGCTTCCTGATGATTCTGATAAGTCGAATACTGCTGATGACGAAAGGCATCACAAGAAATTGCAAGTAATCGATGATGAAGACGATCTTGTCATGCTCGATGGGAATTTAGATGGGTTTAAAAAGAGAAGAGTGTCATAG

Protein sequence

>Msa1281610

MASSIIKDAKVLMVGAGGIGCELLKTLALSGFSDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPKINITSYHANVKDPDFNVDFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKELLFSKLFGDKNQDNDLNVRSSDAASSSKNIEDIFEHSKDEDISQYGKKIFDHVFGYNIELALSNEETWKNRNRPKPIYSKDVLSDELDKQNGNLDNDNACGDGFSVSAMSSLGMKNPQDIWSLRENARVFLEALRLFFTKREKDIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLHSLFEAKGIAGNIVHAVATTNAVIAGLIVIEAIKVLKNDIKSYRMTYCLEHPARNTLLMPVEPFEPNKSCYVCSESPVLLEINTNRSKLKDVVEKIIKAKLGMSLPLVMNASNLLYEAGDIEDDMVAIYNANLEKELKCNINIKHREEFDEEKEPDGMVLSGWTQPAAAAENEDKSVSNGASTSDAPITAVEKSENDDDVGIISPVKKRKLPDDSDKSNTADDERHHKKLQVIDDEDDLVMLDGNLDGFKKRRVS*