AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0439890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439890 MtrunA17_Chr8g0386041 100.000 118 0 0 1 118 1 118 8.12e-84 240
Msa0439890 MtrunA17_Chr7g0224251 64.407 118 42 0 1 118 1 118 3.02e-57 173
Msa0439890 MtrunA17_Chr7g0224241 62.037 108 41 0 1 108 1 108 2.70e-48 157
Msa0439890 MtrunA17_Chr7g0268701 47.009 117 59 3 4 118 5 120 1.22e-34 115
Msa0439890 MtrunA17_Chr6g0454091 48.718 117 56 2 3 118 4 117 1.50e-33 113
Msa0439890 MtrunA17_Chr7g0218501 45.299 117 60 2 4 118 5 119 2.61e-31 107
Msa0439890 MtrunA17_Chr8g0386061 72.917 48 13 0 1 48 1 48 1.17e-20 79.0
Msa0439890 MtrunA17_Chr8g0386071 73.770 61 14 1 44 102 14 74 3.07e-20 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439890 AT4G24990.2 81.356 118 22 0 1 118 1 118 7.45e-71 207
Msa0439890 AT4G24990.1 81.356 118 22 0 1 118 1 118 7.45e-71 207
Msa0439890 AT3G26980.1 63.333 120 42 1 1 118 1 120 1.75e-53 164
Msa0439890 AT1G77870.1 49.167 120 59 1 1 118 1 120 7.55e-36 119
Msa0439890 AT1G22050.1 46.154 117 61 2 3 118 4 119 4.55e-35 117
Msa0439890 AT5G15460.2 47.826 115 57 1 4 115 5 119 1.30e-31 108
Msa0439890 AT5G15460.1 47.826 115 57 1 4 115 5 119 1.30e-31 108
Msa0439890 AT5G15460.4 47.826 115 57 1 4 115 5 119 1.30e-31 108
Msa0439890 AT3G01050.2 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0439890 AT3G01050.3 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0439890 AT3G01050.1 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0439890 AT3G01050.4 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0439890 AT3G01050.5 45.217 115 61 1 4 118 5 117 1.42e-31 108
Msa0439890 AT5G15460.3 47.143 70 34 1 49 115 24 93 1.81e-14 64.3

Find 41 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGAAAAGTTTGGGTTAA+TGG 0.165799 3_3:-6266921 Msa0439890:three_prime_UTR
TATATATTTATAGAAAAGTT+TGG 0.233718 3_3:-6266929 Msa0439890:three_prime_UTR
GATTAGTTCTGGTAAAATAT+TGG 0.241614 3_3:-6268247 Msa0439890:CDS
TTATACGATGGTTCTGATAT+TGG 0.261582 3_3:-6271323 Msa0439890:CDS
GAAGTGAAATTGATTAGTTC+TGG 0.322349 3_3:-6268258 Msa0439890:CDS
ACAAGAACAGACAACCTTCT+TGG 0.322618 3_3:+6267082 None:intergenic
TGAAATGCCGGAAGAAGATT+TGG 0.328122 3_3:-6271363 Msa0439890:exon
ATAAGATTAGGGTTTGAGTA+AGG 0.343070 3_3:-6271423 Msa0439890:five_prime_UTR
GCCATCTCTAGCAAAATCTA+AGG 0.369339 3_3:-6268142 Msa0439890:CDS
GGGATCGAATATTACCTTAC+TGG 0.371716 3_3:+6271552 None:intergenic
TTCACTTCATTTGCTGACTT+TGG 0.374456 3_3:+6268273 None:intergenic
GCACCATTTGGTGATATTGC+AGG 0.375129 3_3:-6268195 Msa0439890:CDS
ATATCAACCAAATCTTCTTC+CGG 0.380506 3_3:+6271356 None:intergenic
ATTGTCTCTGATTGGCCTAA+AGG 0.386290 3_3:-6271251 Msa0439890:intron
ATCAAAAGAAAGATAAGATT+AGG 0.389904 3_3:-6271435 Msa0439890:five_prime_UTR
AGTCAAAACAATCTTTGAAA+TGG 0.392525 3_3:-6271609 Msa0439890:five_prime_UTR
TCAAAAGAAAGATAAGATTA+GGG 0.393619 3_3:-6271434 Msa0439890:five_prime_UTR
GTTCTGATATTGGACCCTTT+AGG 0.396203 3_3:-6271313 Msa0439890:CDS
ATTTGGTTGATATCAAGTTT+AGG 0.398560 3_3:-6271346 Msa0439890:CDS
ATATATTTATAGAAAAGTTT+GGG 0.404295 3_3:-6266928 Msa0439890:three_prime_UTR
AGCAAAGAATTGTCTCTGAT+TGG 0.406651 3_3:-6271259 Msa0439890:CDS
TAAGATTAGGGTTTGAGTAA+GGG 0.461711 3_3:-6271422 Msa0439890:five_prime_UTR
ACAGGGATGCTGAAAATAGA+AGG 0.467632 3_3:+6266974 None:intergenic
AGTGAAAACGCCATGCATAA+TGG 0.483681 3_3:+6266820 None:intergenic
GGATCGAATATTACCTTACT+GGG 0.493683 3_3:+6271553 None:intergenic
CACCATTTGGTGATATTGCA+GGG 0.494798 3_3:-6268194 Msa0439890:CDS
ATCAAAGTGAATTGAAATGC+CGG 0.499497 3_3:-6271375 Msa0439890:exon
AAATCAAATCAAACCCAGTA+AGG 0.505665 3_3:-6271566 Msa0439890:intron
TGCATAATGGTAGCAATCAA+TGG 0.508344 3_3:+6266833 None:intergenic
AGCAGCAGATGAATACCTAA+AGG 0.527922 3_3:+6271298 None:intergenic
GGTCAGTGTAAAGCACCATT+TGG 0.539107 3_3:-6268207 Msa0439890:CDS
GCAGCAGATGAATACCTAAA+GGG 0.552811 3_3:+6271299 None:intergenic
TCTCTAGCAAAATCTAAGGC+TGG 0.561259 3_3:-6268138 Msa0439890:intron
GGTTGACGATTCATCCAAGA+AGG 0.562796 3_3:-6267096 Msa0439890:CDS
TGTGAAGACAGTTTGTGAGT+TGG 0.568556 3_3:-6267052 Msa0439890:exon
TTGGAAAACAACAAGACTGT+TGG 0.569386 3_3:-6268228 Msa0439890:CDS
AAGGATTTCGATCAAGCAGA+TGG 0.570386 3_3:+6266993 None:intergenic
TTGATTGCTACCATTATGCA+TGG 0.587552 3_3:-6266830 Msa0439890:three_prime_UTR
ATCAAGTTTAGGTTATACGA+TGG 0.616001 3_3:-6271335 Msa0439890:CDS
ACCATTTGGTGATATTGCAG+GGG 0.625339 3_3:-6268193 Msa0439890:CDS
CCATTTGGTGATATTGCAGG+GGG 0.647774 3_3:-6268192 Msa0439890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAGTAATATAATTAAAA+GGG + chr3_3:6266977-6266996 None:intergenic 10.0%
!! TGAATAGTAATATAATTAAA+AGG + chr3_3:6266978-6266997 None:intergenic 10.0%
!!! TTTATTTACTGTTTTTATTT+TGG - chr3_3:6267320-6267339 Msa0439890:intron 10.0%
!!! TTTTTTTAAAATATTTTTGG+AGG + chr3_3:6267760-6267779 None:intergenic 10.0%
!! TGAATAGAATAAAATATTAT+GGG - chr3_3:6268758-6268777 Msa0439890:intron 10.0%
!! TATATATTTATAGAAAAGTT+TGG - chr3_3:6271577-6271596 Msa0439890:five_prime_UTR 10.0%
!! ATATATTTATAGAAAAGTTT+GGG - chr3_3:6271578-6271597 Msa0439890:five_prime_UTR 10.0%
!! AAGAAAATAAAAACATTGAA+AGG - chr3_3:6266853-6266872 Msa0439890:three_prime_UTR 15.0%
!!! CATTTTTGATTGAAAATTTT+AGG - chr3_3:6267047-6267066 Msa0439890:three_prime_UTR 15.0%
!! TTTCATATTTATATATGAAG+TGG - chr3_3:6267557-6267576 Msa0439890:intron 15.0%
!! CTGAATAGAATAAAATATTA+TGG - chr3_3:6268757-6268776 Msa0439890:intron 15.0%
!!! GTTATTTTTATCTTAATTTC+CGG - chr3_3:6269742-6269761 Msa0439890:intron 15.0%
!!! AAACATATTTTTCATGATTT+AGG + chr3_3:6269794-6269813 None:intergenic 15.0%
!! TTATATTGAGTGATATATTA+TGG - chr3_3:6269967-6269986 Msa0439890:intron 15.0%
!! TTATATTGAGTGATATATTA+TGG - chr3_3:6269967-6269986 Msa0439890:intron 15.0%
!!! TCATTTTCTCAAAATATTAT+TGG + chr3_3:6270951-6270970 None:intergenic 15.0%
!! ATCAAAAGAAAGATAAGATT+AGG - chr3_3:6267071-6267090 Msa0439890:CDS 20.0%
!! TCAAAAGAAAGATAAGATTA+GGG - chr3_3:6267072-6267091 Msa0439890:CDS 20.0%
!! GAAAAAAAAAACAAACCTTT+AGG + chr3_3:6267273-6267292 None:intergenic 20.0%
!!! TTACTGTTTTTATTTTGGTT+AGG - chr3_3:6267325-6267344 Msa0439890:intron 20.0%
!!! AGTTTGACTTTAAATTTCAT+CGG - chr3_3:6267456-6267475 Msa0439890:intron 20.0%
!!! TTTTTATTAGAAGATAACCA+AGG - chr3_3:6267638-6267657 Msa0439890:intron 20.0%
!!! TTGATTTTAGATCTTTATTG+AGG + chr3_3:6267836-6267855 None:intergenic 20.0%
!! AATCAATTTAATCTTTGTTG+AGG + chr3_3:6267885-6267904 None:intergenic 20.0%
!! TGAGTAAAAGAAAATTATGA+TGG + chr3_3:6268556-6268575 None:intergenic 20.0%
!!! TATTTTATTCTATTCAGAGA+AGG + chr3_3:6268754-6268773 None:intergenic 20.0%
!!! AAGATTTTTGTAACTCAATA+AGG - chr3_3:6269241-6269260 Msa0439890:intron 20.0%
!!! AGATTTTTGTAACTCAATAA+GGG - chr3_3:6269242-6269261 Msa0439890:intron 20.0%
!! GATTGTGATATAATTACTAA+AGG - chr3_3:6269266-6269285 Msa0439890:intron 20.0%
!! ATGTTAAAATTACACAGAAA+AGG - chr3_3:6269463-6269482 Msa0439890:intron 20.0%
!! ACTTATATTCCATGTATTAT+TGG + chr3_3:6269724-6269743 None:intergenic 20.0%
!! AAAAATATGTTTAACATGCT+CGG - chr3_3:6269802-6269821 Msa0439890:intron 20.0%
!! TGATTATTGTTAATTCTAAC+AGG - chr3_3:6270045-6270064 Msa0439890:intron 20.0%
!!! TGAAAAAAGAATTTTCTACA+GGG + chr3_3:6270547-6270566 None:intergenic 20.0%
!!! TTGAAAAAAGAATTTTCTAC+AGG + chr3_3:6270548-6270567 None:intergenic 20.0%
!!! GGGTTTTCATTTTTAAATTA+CGG + chr3_3:6270824-6270843 None:intergenic 20.0%
!! TTCAAATCAAAAGATATTGT+AGG + chr3_3:6271333-6271352 None:intergenic 20.0%
!!! TACAATATCTTTTGATTTGA+AGG - chr3_3:6271332-6271351 Msa0439890:CDS 20.0%
!!! CTTTCCTTTTTTTTCTTCTT+CGG + chr3_3:6266836-6266855 None:intergenic 25.0%
!! AGTCAAAACAATCTTTGAAA+TGG - chr3_3:6266897-6266916 Msa0439890:three_prime_UTR 25.0%
!! ATTTGGTTGATATCAAGTTT+AGG - chr3_3:6267160-6267179 Msa0439890:intron 25.0%
!! TTAGGTTTGATTGTTGATTA+GGG - chr3_3:6267343-6267362 Msa0439890:intron 25.0%
!!! GTGTCACTTTTTTTTAGTTT+TGG - chr3_3:6267365-6267384 Msa0439890:intron 25.0%
!!! TTTCTGTGTTGTTTTTATTG+AGG - chr3_3:6268341-6268360 Msa0439890:intron 25.0%
! TTGTAACAGCAGAAAATATA+CGG + chr3_3:6268368-6268387 None:intergenic 25.0%
! TAAGGAAAATAGATTGACAT+TGG + chr3_3:6268795-6268814 None:intergenic 25.0%
! AAAGCTGTTAATATCAGTAT+TGG + chr3_3:6268855-6268874 None:intergenic 25.0%
! AATTACTAAAGGAGAAAACT+AGG - chr3_3:6269277-6269296 Msa0439890:intron 25.0%
! TTAAAATTACACAGAAAAGG+TGG - chr3_3:6269466-6269485 Msa0439890:intron 25.0%
! ATACAAAAACTAAGATGTGT+AGG - chr3_3:6269568-6269587 Msa0439890:intron 25.0%
!! TTTTATGCAAGGAATCATAA+TGG + chr3_3:6269643-6269662 None:intergenic 25.0%
! ATTATGATTCCTTGCATAAA+AGG - chr3_3:6269642-6269661 Msa0439890:intron 25.0%
! AGTAGGGTTCTTATTATTAT+AGG + chr3_3:6269670-6269689 None:intergenic 25.0%
! GATGTATCGTTAAAATAGTA+GGG + chr3_3:6269686-6269705 None:intergenic 25.0%
! AGATGTATCGTTAAAATAGT+AGG + chr3_3:6269687-6269706 None:intergenic 25.0%
! TATTCCATGTATTATTGGAA+GGG + chr3_3:6269719-6269738 None:intergenic 25.0%
! ATATTCCATGTATTATTGGA+AGG + chr3_3:6269720-6269739 None:intergenic 25.0%
!! TTCTCTTTTACAACTTATTG+AGG - chr3_3:6270129-6270148 Msa0439890:intron 25.0%
!!! GATTAGTTCTGGTAAAATAT+TGG - chr3_3:6270259-6270278 Msa0439890:intron 25.0%
! TGCATTAACAATAGAAACTA+TGG + chr3_3:6270400-6270419 None:intergenic 25.0%
!!! CATATTACTTTAGAGTGTTT+GGG + chr3_3:6270877-6270896 None:intergenic 25.0%
!!! CAAACACTCTAAAGTAATAT+GGG - chr3_3:6270876-6270895 Msa0439890:intron 25.0%
!!! CATTAGAATTGGTTTTATCT+TGG + chr3_3:6271151-6271170 None:intergenic 25.0%
! AAGTTAGCAATCATTAGAAT+TGG + chr3_3:6271162-6271181 None:intergenic 25.0%
! AACTTAAAACCATACATGTT+TGG - chr3_3:6271177-6271196 Msa0439890:intron 25.0%
! ACTTAAAACCATACATGTTT+GGG - chr3_3:6271178-6271197 Msa0439890:intron 25.0%
! GGGTTATATGAACATAATAA+TGG - chr3_3:6271232-6271251 Msa0439890:intron 25.0%
! ATGAACATAATAATGGTTGA+AGG - chr3_3:6271239-6271258 Msa0439890:intron 25.0%
!! TTGTATACGTATTTTACACA+GGG + chr3_3:6271552-6271571 None:intergenic 25.0%
!! TATAGAAAAGTTTGGGTTAA+TGG - chr3_3:6271585-6271604 Msa0439890:five_prime_UTR 25.0%
!! TTTTTATTACAACGTCGAAA+AGG - chr3_3:6271634-6271653 Msa0439890:five_prime_UTR 25.0%
TAAAAACATTGAAAGGAGCT+AGG - chr3_3:6266860-6266879 Msa0439890:three_prime_UTR 30.0%
AAATCAAATCAAACCCAGTA+AGG - chr3_3:6266940-6266959 Msa0439890:three_prime_UTR 30.0%
ATAAGATTAGGGTTTGAGTA+AGG - chr3_3:6267083-6267102 Msa0439890:CDS 30.0%
TAAGATTAGGGTTTGAGTAA+GGG - chr3_3:6267084-6267103 Msa0439890:CDS 30.0%
ATCAAAGTGAATTGAAATGC+CGG - chr3_3:6267131-6267150 Msa0439890:intron 30.0%
ATATCAACCAAATCTTCTTC+CGG + chr3_3:6267153-6267172 None:intergenic 30.0%
! ATCAAGTTTAGGTTATACGA+TGG - chr3_3:6267171-6267190 Msa0439890:intron 30.0%
!! TTATACGATGGTTCTGATAT+TGG - chr3_3:6267183-6267202 Msa0439890:intron 30.0%
! GTTAGGTTTGATTGTTGATT+AGG - chr3_3:6267342-6267361 Msa0439890:intron 30.0%
!! TCTTTGAGATGTTAGTTTAG+TGG - chr3_3:6267429-6267448 Msa0439890:intron 30.0%
ACTTTAAATTTCATCGGCAA+CGG - chr3_3:6267462-6267481 Msa0439890:intron 30.0%
!! CTTGCTCTTTTCTTTTAAGT+TGG - chr3_3:6267532-6267551 Msa0439890:intron 30.0%
TCAAAATGAAACTCCTAGTT+TGG + chr3_3:6267583-6267602 None:intergenic 30.0%
!!! TAGGAGTTTCATTTTGAGTT+TGG - chr3_3:6267586-6267605 Msa0439890:intron 30.0%
TTAGAAGATAACCAAGGATT+TGG - chr3_3:6267644-6267663 Msa0439890:intron 30.0%
!! TTGGAGCTGTTTGATTTTTA+TGG - chr3_3:6267663-6267682 Msa0439890:intron 30.0%
TTTAGTAAAATCACTGTGCT+GGG + chr3_3:6268199-6268218 None:intergenic 30.0%
! TTTTAGTAAAATCACTGTGC+TGG + chr3_3:6268200-6268219 None:intergenic 30.0%
ACAACACAGAAACCTAAAAT+GGG + chr3_3:6268333-6268352 None:intergenic 30.0%
AACAACACAGAAACCTAAAA+TGG + chr3_3:6268334-6268353 None:intergenic 30.0%
AACTCATACAGAATTCTGAT+TGG + chr3_3:6268907-6268926 None:intergenic 30.0%
AATCTTAAACTCCATTTACC+TGG + chr3_3:6269227-6269246 None:intergenic 30.0%
ATTTCATCATCTGTGAGATA+TGG + chr3_3:6269506-6269525 None:intergenic 30.0%
AAAACTAAGATGTGTAGGTA+TGG - chr3_3:6269573-6269592 Msa0439890:intron 30.0%
ACACTGTCTAACATCATTAA+CGG - chr3_3:6269602-6269621 Msa0439890:intron 30.0%
! TTATAGGAACCTTTTATGCA+AGG + chr3_3:6269654-6269673 None:intergenic 30.0%
ATTCCATGTATTATTGGAAG+GGG + chr3_3:6269718-6269737 None:intergenic 30.0%
AGTTGTAAAAGAGAACCTAA+AGG + chr3_3:6270124-6270143 None:intergenic 30.0%
TATTGAGGATTATGTATGCA+CGG - chr3_3:6270144-6270163 Msa0439890:intron 30.0%
! AAACGTTTTGCCTACATTAT+GGG + chr3_3:6270210-6270229 None:intergenic 30.0%
! GAAGTGAAATTGATTAGTTC+TGG - chr3_3:6270248-6270267 Msa0439890:intron 30.0%
TGAAATAGATGAGGTAGAAA+TGG - chr3_3:6270463-6270482 Msa0439890:intron 30.0%
! GCTGAAAAACATAATTTGCA+GGG - chr3_3:6270485-6270504 Msa0439890:intron 30.0%
! AATCTTTTTACCTTGCGTAT+AGG - chr3_3:6270566-6270585 Msa0439890:intron 30.0%
!! CCATATTACTTTAGAGTGTT+TGG + chr3_3:6270878-6270897 None:intergenic 30.0%
!! CCAAACACTCTAAAGTAATA+TGG - chr3_3:6270875-6270894 Msa0439890:intron 30.0%
CTTAAAACCATACATGTTTG+GGG - chr3_3:6271179-6271198 Msa0439890:intron 30.0%
ATAACATGCTTCATACTTGA+TGG + chr3_3:6271285-6271304 None:intergenic 30.0%
! CTTTTACTTAACAGAGAAGA+AGG - chr3_3:6271389-6271408 Msa0439890:five_prime_UTR 30.0%
! CTTGTATACGTATTTTACAC+AGG + chr3_3:6271553-6271572 None:intergenic 30.0%
!!! TTTTTTTCTTCTTCGGTTGG+TGG + chr3_3:6266829-6266848 None:intergenic 35.0%
!!! CCTTTTTTTTCTTCTTCGGT+TGG + chr3_3:6266832-6266851 None:intergenic 35.0%
CCAACCGAAGAAGAAAAAAA+AGG - chr3_3:6266829-6266848 Msa0439890:three_prime_UTR 35.0%
GGATCGAATATTACCTTACT+GGG + chr3_3:6266956-6266975 None:intergenic 35.0%
AGCAAAGAATTGTCTCTGAT+TGG - chr3_3:6267247-6267266 Msa0439890:intron 35.0%
!!! AGTTTTGGAACTTGTTTGCT+TGG - chr3_3:6267380-6267399 Msa0439890:intron 35.0%
ATATATGAAGTGGCCAAACT+AGG - chr3_3:6267567-6267586 Msa0439890:intron 35.0%
TGGTTGTTTGTGTCAATATG+TGG - chr3_3:6267683-6267702 Msa0439890:intron 35.0%
!! TCAATATGTGGTGTTGTTCA+TGG - chr3_3:6267695-6267714 Msa0439890:intron 35.0%
! GTGTTTATGGCCTTAATCTT+GGG + chr3_3:6267725-6267744 None:intergenic 35.0%
! TGTGTTTATGGCCTTAATCT+TGG + chr3_3:6267726-6267745 None:intergenic 35.0%
GCTTAAGACGATTGTGTTTA+TGG + chr3_3:6267738-6267757 None:intergenic 35.0%
TTGTGCTAACTCACCAAATT+AGG - chr3_3:6267920-6267939 Msa0439890:intron 35.0%
TTCTTCTCCTAGAAGAGAAT+CGG - chr3_3:6268094-6268113 Msa0439890:intron 35.0%
AAAAAACCCGATTCTCTTCT+AGG + chr3_3:6268104-6268123 None:intergenic 35.0%
!!! AGAAGAGAATCGGGTTTTTT+TGG - chr3_3:6268104-6268123 Msa0439890:intron 35.0%
!!! GAAGAGAATCGGGTTTTTTT+GGG - chr3_3:6268105-6268124 Msa0439890:intron 35.0%
!!! AAGAGAATCGGGTTTTTTTG+GGG - chr3_3:6268106-6268125 Msa0439890:intron 35.0%
! AACCTAAAATGGGCTTGATT+TGG + chr3_3:6268323-6268342 None:intergenic 35.0%
GGTATGAATGTGGGTTTATT+TGG - chr3_3:6268492-6268511 Msa0439890:intron 35.0%
TTTCATTCACACAGACAAAC+AGG - chr3_3:6268703-6268722 Msa0439890:intron 35.0%
TTTATTAAGAGGGTCCATGA+AGG - chr3_3:6269056-6269075 Msa0439890:intron 35.0%
AGGAATGAAAGGTAAAAGTG+TGG - chr3_3:6269130-6269149 Msa0439890:intron 35.0%
TCTCTAGACAATGATCACAA+CGG - chr3_3:6269192-6269211 Msa0439890:intron 35.0%
TCTAATAACCATGTCCTCAT+TGG + chr3_3:6269330-6269349 None:intergenic 35.0%
AGAGAGGAATGCAAAACAAA+AGG - chr3_3:6269363-6269382 Msa0439890:intron 35.0%
CAGAGCAGTATATTCTTTCA+TGG + chr3_3:6269438-6269457 None:intergenic 35.0%
GAAAGAATATACTGCTCTGT+TGG - chr3_3:6269439-6269458 Msa0439890:intron 35.0%
GCAAGGAATCATAATGGTTT+AGG + chr3_3:6269637-6269656 None:intergenic 35.0%
! AATCATTTTACAGGGTAGAC+CGG + chr3_3:6269764-6269783 None:intergenic 35.0%
TCTACCCTGTAAAATGATTG+AGG - chr3_3:6269765-6269784 Msa0439890:intron 35.0%
! GTGTCCTCAATCATTTTACA+GGG + chr3_3:6269772-6269791 None:intergenic 35.0%
AACATGCTCGGTATAACATT+TGG - chr3_3:6269814-6269833 Msa0439890:intron 35.0%
! ACTCTCTGCAAGGAAAATTT+TGG - chr3_3:6269867-6269886 Msa0439890:intron 35.0%
GTTTGAACTGAGTAAGTGAA+GGG + chr3_3:6269893-6269912 None:intergenic 35.0%
AGTTTGAACTGAGTAAGTGA+AGG + chr3_3:6269894-6269913 None:intergenic 35.0%
AATACTCATGTAGCTCCTTT+AGG - chr3_3:6270106-6270125 Msa0439890:intron 35.0%
ATTGAGGATTATGTATGCAC+GGG - chr3_3:6270145-6270164 Msa0439890:intron 35.0%
! TGTTCTTTTCCCCATAATGT+AGG - chr3_3:6270197-6270216 Msa0439890:intron 35.0%
! AACGTTTTGCCTACATTATG+GGG + chr3_3:6270209-6270228 None:intergenic 35.0%
! GAAACGTTTTGCCTACATTA+TGG + chr3_3:6270211-6270230 None:intergenic 35.0%
!! TTCACTTCATTTGCTGACTT+TGG + chr3_3:6270236-6270255 None:intergenic 35.0%
TTGGAAAACAACAAGACTGT+TGG - chr3_3:6270278-6270297 Msa0439890:intron 35.0%
GGCTGAATTACATGTTAATG+TGG + chr3_3:6270434-6270453 None:intergenic 35.0%
TCATCTATTTCATCAAGAGG+TGG + chr3_3:6270455-6270474 None:intergenic 35.0%
ACCTCTTGATGAAATAGATG+AGG - chr3_3:6270454-6270473 Msa0439890:intron 35.0%
ACCTCATCTATTTCATCAAG+AGG + chr3_3:6270458-6270477 None:intergenic 35.0%
! GGCTGAAAAACATAATTTGC+AGG - chr3_3:6270484-6270503 Msa0439890:intron 35.0%
! AATTTTCTACAGGGAAAAGC+TGG + chr3_3:6270538-6270557 None:intergenic 35.0%
TAGAAGTTGTTGAAAGCCTA+AGG - chr3_3:6270627-6270646 Msa0439890:intron 35.0%
AGAAGTTGTTGAAAGCCTAA+GGG - chr3_3:6270628-6270647 Msa0439890:intron 35.0%
!! TTACTTTAGAGTGTTTGGGT+AGG + chr3_3:6270873-6270892 None:intergenic 35.0%
CTTTGTAACACCGACATTTA+TGG + chr3_3:6271044-6271063 None:intergenic 35.0%
! ATAACTTCTCAAAGGCATGT+CGG + chr3_3:6271074-6271093 None:intergenic 35.0%
!!! TGGTTTTATCTTGGACAAGT+GGG + chr3_3:6271142-6271161 None:intergenic 35.0%
!!! TTGGTTTTATCTTGGACAAG+TGG + chr3_3:6271143-6271162 None:intergenic 35.0%
TGCATAATGGTAGCAATCAA+TGG + chr3_3:6271676-6271695 None:intergenic 35.0%
TTGATTGCTACCATTATGCA+TGG - chr3_3:6271676-6271695 Msa0439890:five_prime_UTR 35.0%
GGGATCGAATATTACCTTAC+TGG + chr3_3:6266957-6266976 None:intergenic 40.0%
TGAAATGCCGGAAGAAGATT+TGG - chr3_3:6267143-6267162 Msa0439890:intron 40.0%
GTTCTGATATTGGACCCTTT+AGG - chr3_3:6267193-6267212 Msa0439890:intron 40.0%
GCAGCAGATGAATACCTAAA+GGG + chr3_3:6267210-6267229 None:intergenic 40.0%
AGCAGCAGATGAATACCTAA+AGG + chr3_3:6267211-6267230 None:intergenic 40.0%
!! ATTGTCTCTGATTGGCCTAA+AGG - chr3_3:6267255-6267274 Msa0439890:intron 40.0%
TTAAATTTCATCGGCAACGG+CGG - chr3_3:6267465-6267484 Msa0439890:intron 40.0%
ATCAAACAGCTCCAAATCCT+TGG + chr3_3:6267658-6267677 None:intergenic 40.0%
!! ACCAATCCTCAAGTTGACAA+CGG - chr3_3:6268007-6268026 Msa0439890:intron 40.0%
!!! ACATCTGGTTTTTCCAGAGT+TGG - chr3_3:6268031-6268050 Msa0439890:intron 40.0%
!! ATTCTTCGAGTTGCCCATTT+GGG + chr3_3:6268064-6268083 None:intergenic 40.0%
!! AATTCTTCGAGTTGCCCATT+TGG + chr3_3:6268065-6268084 None:intergenic 40.0%
TCTTCTCCTAGAAGAGAATC+GGG - chr3_3:6268095-6268114 Msa0439890:intron 40.0%
ATTCTTTGAGTCGCCCATTT+GGG + chr3_3:6268143-6268162 None:intergenic 40.0%
CGACTCAAAGAATCAAACCT+GGG - chr3_3:6268150-6268169 Msa0439890:CDS 40.0%
! AGCCAAATCAAGCCCATTTT+AGG - chr3_3:6268318-6268337 Msa0439890:intron 40.0%
! TCTCGTCTGTGTTAGTTTCA+TGG - chr3_3:6268465-6268484 Msa0439890:intron 40.0%
! CTCGTCTGTGTTAGTTTCAT+GGG - chr3_3:6268466-6268485 Msa0439890:intron 40.0%
! TCTGTGTTAGTTTCATGGGT+AGG - chr3_3:6268470-6268489 Msa0439890:intron 40.0%
! CTGTGTTAGTTTCATGGGTA+GGG - chr3_3:6268471-6268490 Msa0439890:intron 40.0%
GAAGACTGAATAATGACGAG+AGG - chr3_3:6268519-6268538 Msa0439890:intron 40.0%
TGAATAATGACGAGAGGACA+CGG - chr3_3:6268525-6268544 Msa0439890:intron 40.0%
TTCCTTATCAACAGCCGTTA+CGG - chr3_3:6268808-6268827 Msa0439890:intron 40.0%
ACTAACTTCGATCTCCGTAA+CGG + chr3_3:6268825-6268844 None:intergenic 40.0%
!! GAGGCATCGGTTTATTAAGA+GGG - chr3_3:6269046-6269065 Msa0439890:intron 40.0%
!! GATCTAGTTCTTCACCTTCA+TGG + chr3_3:6269073-6269092 None:intergenic 40.0%
AGAACTAGATCTAGCATCAG+TGG - chr3_3:6269082-6269101 Msa0439890:intron 40.0%
GAACTAGATCTAGCATCAGT+GGG - chr3_3:6269083-6269102 Msa0439890:intron 40.0%
ATGGCAGAAGTAGGAATGAA+AGG - chr3_3:6269119-6269138 Msa0439890:intron 40.0%
GTGTGGTAGTTGTAGTTAGT+TGG - chr3_3:6269147-6269166 Msa0439890:intron 40.0%
TCTAGAGACTATGTCCTTGT+TGG + chr3_3:6269180-6269199 None:intergenic 40.0%
AGACAATGATCACAACGGAT+AGG - chr3_3:6269197-6269216 Msa0439890:intron 40.0%
AATGATCACAACGGATAGGA+AGG - chr3_3:6269201-6269220 Msa0439890:intron 40.0%
AAAGGAGAAAACTAGGAGTG+TGG - chr3_3:6269284-6269303 Msa0439890:intron 40.0%
TGGTAGTTGTAGATTCTGCT+CGG - chr3_3:6269304-6269323 Msa0439890:intron 40.0%
AGACAACTGTCAGATTAGAG+AGG - chr3_3:6269347-6269366 Msa0439890:intron 40.0%
TGACCCCTTCCAATAATACA+TGG - chr3_3:6269712-6269731 Msa0439890:intron 40.0%
! GGTGTCCTCAATCATTTTAC+AGG + chr3_3:6269773-6269792 None:intergenic 40.0%
! CACCATTTGGTGATATTGCA+GGG - chr3_3:6270312-6270331 Msa0439890:intron 40.0%
! ACCATTTGGTGATATTGCAG+GGG - chr3_3:6270313-6270332 Msa0439890:intron 40.0%
GCCATCTCTAGCAAAATCTA+AGG - chr3_3:6270364-6270383 Msa0439890:intron 40.0%
! GCCTTAGATTTTGCTAGAGA+TGG + chr3_3:6270368-6270387 None:intergenic 40.0%
! TCTCTAGCAAAATCTAAGGC+TGG - chr3_3:6270368-6270387 Msa0439890:intron 40.0%
GTAACAAAGTCCTATACGCA+AGG + chr3_3:6270579-6270598 None:intergenic 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG - chr3_3:6270645-6270664 Msa0439890:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr3_3:6270651-6270670 Msa0439890:intron 40.0%
ATTGAGGGTTTAGGAGAAGA+AGG - chr3_3:6270660-6270679 Msa0439890:intron 40.0%
TTGAGGGTTTAGGAGAAGAA+GGG - chr3_3:6270661-6270680 Msa0439890:intron 40.0%
! TTTAGAGTGTTTGGGTAGGA+GGG + chr3_3:6270869-6270888 None:intergenic 40.0%
ACACCTTGGACCATAAATGT+CGG - chr3_3:6271031-6271050 Msa0439890:intron 40.0%
GTTTAGTAGATGAGATGCCT+CGG + chr3_3:6271097-6271116 None:intergenic 40.0%
CAACTTTCCCCAAACATGTA+TGG + chr3_3:6271189-6271208 None:intergenic 40.0%
TAATGGTTGAAGGAGATACC+TGG - chr3_3:6271249-6271268 Msa0439890:intron 40.0%
AATGGTTGAAGGAGATACCT+GGG - chr3_3:6271250-6271269 Msa0439890:intron 40.0%
ACAAGAACAGACAACCTTCT+TGG + chr3_3:6271427-6271446 None:intergenic 40.0%
TGTGAAGACAGTTTGTGAGT+TGG - chr3_3:6271454-6271473 Msa0439890:intron 40.0%
! ATCAAGCAGATGGTTTTCTG+TGG + chr3_3:6271506-6271525 None:intergenic 40.0%
AAGGATTTCGATCAAGCAGA+TGG + chr3_3:6271516-6271535 None:intergenic 40.0%
ACAGGGATGCTGAAAATAGA+AGG + chr3_3:6271535-6271554 None:intergenic 40.0%
AGTGAAAACGCCATGCATAA+TGG + chr3_3:6271689-6271708 None:intergenic 40.0%
!! TATGTGGTGTTGTTCATGGC+TGG - chr3_3:6267699-6267718 Msa0439890:intron 45.0%
CGGGGTCAAAGATCCTAATT+TGG + chr3_3:6267936-6267955 None:intergenic 45.0%
!! ACTTGAGGATTGGTCCCATA+GGG + chr3_3:6268001-6268020 None:intergenic 45.0%
!! AACTTGAGGATTGGTCCCAT+AGG + chr3_3:6268002-6268021 None:intergenic 45.0%
!! CCAATCCTCAAGTTGACAAC+GGG - chr3_3:6268008-6268027 Msa0439890:intron 45.0%
AGTTGGACTACCTCCCAAAT+GGG - chr3_3:6268048-6268067 Msa0439890:intron 45.0%
GCAACTCGAAGAATTGAACC+CGG - chr3_3:6268070-6268089 Msa0439890:intron 45.0%
CAACTCGAAGAATTGAACCC+GGG - chr3_3:6268071-6268090 Msa0439890:intron 45.0%
! TCTCTTCTAGGAGAAGAACC+CGG + chr3_3:6268092-6268111 None:intergenic 45.0%
GATTCTTTGAGTCGCCCATT+TGG + chr3_3:6268144-6268163 None:intergenic 45.0%
GCGACTCAAAGAATCAAACC+TGG - chr3_3:6268149-6268168 Msa0439890:CDS 45.0%
! CTCTTCTAGGAAAAGAACCC+AGG + chr3_3:6268170-6268189 None:intergenic 45.0%
!! GGGCTTGATTTGGCTTACAT+TGG + chr3_3:6268313-6268332 None:intergenic 45.0%
TCATGGGTAGGGTATGAATG+TGG - chr3_3:6268482-6268501 Msa0439890:intron 45.0%
CATGGGTAGGGTATGAATGT+GGG - chr3_3:6268483-6268502 Msa0439890:intron 45.0%
GAATAATGACGAGAGGACAC+GGG - chr3_3:6268526-6268545 Msa0439890:intron 45.0%
ACAAACAGGCGTATAGCTCT+TGG - chr3_3:6268717-6268736 Msa0439890:intron 45.0%
GAGATCATGAGACTAGGAGA+GGG + chr3_3:6268958-6268977 None:intergenic 45.0%
GGAATGGAGATCATGAGACT+AGG + chr3_3:6268964-6268983 None:intergenic 45.0%
TTGGCACCACTTGATTCAAG+TGG - chr3_3:6269024-6269043 Msa0439890:intron 45.0%
ATGCCTCCACTTGAATCAAG+TGG + chr3_3:6269033-6269052 None:intergenic 45.0%
! CTTGATTCAAGTGGAGGCAT+CGG - chr3_3:6269033-6269052 Msa0439890:intron 45.0%
!! GGAGGCATCGGTTTATTAAG+AGG - chr3_3:6269045-6269064 Msa0439890:intron 45.0%
ATCTAGCATCAGTGGGAAAG+AGG - chr3_3:6269090-6269109 Msa0439890:intron 45.0%
AGTGGGAAAGAGGAAAAGCA+TGG - chr3_3:6269100-6269119 Msa0439890:intron 45.0%
! AGGAAAAGCATGGCAGAAGT+AGG - chr3_3:6269110-6269129 Msa0439890:intron 45.0%
ACAGAAAAGGTGGAAACGAG+AGG - chr3_3:6269476-6269495 Msa0439890:intron 45.0%
TTGTCGTCAAACTCTCTGCA+AGG - chr3_3:6269857-6269876 Msa0439890:intron 45.0%
! GGTCAGTGTAAAGCACCATT+TGG - chr3_3:6270299-6270318 Msa0439890:intron 45.0%
! GCACCATTTGGTGATATTGC+AGG - chr3_3:6270311-6270330 Msa0439890:intron 45.0%
! CCATTTGGTGATATTGCAGG+GGG - chr3_3:6270314-6270333 Msa0439890:intron 45.0%
! TGAAAGCCTAAGGGTGTGTT+TGG - chr3_3:6270637-6270656 Msa0439890:intron 45.0%
CTCAATCCAAACACACCCTT+AGG + chr3_3:6270646-6270665 None:intergenic 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG - chr3_3:6270644-6270663 Msa0439890:intron 45.0%
!! CTTTAGAGTGTTTGGGTAGG+AGG + chr3_3:6270870-6270889 None:intergenic 45.0%
AACCTATGAAGCACAGACAC+TGG - chr3_3:6270905-6270924 Msa0439890:intron 45.0%
GTAATCACATGCCTCGTTGT+CGG - chr3_3:6270982-6271001 Msa0439890:intron 45.0%
TTTATGGTCCAAGGTGTGTC+TGG + chr3_3:6271028-6271047 None:intergenic 45.0%
ACACCGACATTTATGGTCCA+AGG + chr3_3:6271037-6271056 None:intergenic 45.0%
! TGCCTTTGAGAAGTTATCCG+AGG - chr3_3:6271077-6271096 Msa0439890:intron 45.0%
TGCCTCGGATAACTTCTCAA+AGG + chr3_3:6271082-6271101 None:intergenic 45.0%
CTCTACCAGACTTACAAGGT+GGG + chr3_3:6271213-6271232 None:intergenic 45.0%
CACCTTGTAAGTCTGGTAGA+GGG - chr3_3:6271212-6271231 Msa0439890:intron 45.0%
AACCCTCTACCAGACTTACA+AGG + chr3_3:6271217-6271236 None:intergenic 45.0%
GGTTGACGATTCATCCAAGA+AGG - chr3_3:6271410-6271429 Msa0439890:five_prime_UTR 45.0%
!!! ATGTTTTTTTAAAATATTTT+TGG + chr3_3:6267763-6267782 None:intergenic 5.0%
! TCATGGCTGGCCCAAGATTA+AGG - chr3_3:6267712-6267731 Msa0439890:intron 50.0%
TAGGATCTTTGACCCCGAGT+AGG - chr3_3:6267939-6267958 Msa0439890:intron 50.0%
TAAGCCGTCAGGATACCTTG+AGG + chr3_3:6267967-6267986 None:intergenic 50.0%
CCCGTTGTCAACTTGAGGAT+TGG + chr3_3:6268011-6268030 None:intergenic 50.0%
GATGTCCCGTTGTCAACTTG+AGG + chr3_3:6268016-6268035 None:intergenic 50.0%
! CAAGTTGACAACGGGACATC+TGG - chr3_3:6268016-6268035 Msa0439890:intron 50.0%
TTTGGGAGGTAGTCCAACTC+TGG + chr3_3:6268047-6268066 None:intergenic 50.0%
GAGTTGGACTACCTCCCAAA+TGG - chr3_3:6268047-6268066 Msa0439890:intron 50.0%
! CTCTTCTAGGAGAAGAACCC+GGG + chr3_3:6268091-6268110 None:intergenic 50.0%
!!! GAATCGGGTTTTTTTGGGGC+TGG - chr3_3:6268110-6268129 Msa0439890:intron 50.0%
TGCTGGGATGACTCTCTTCT+AGG + chr3_3:6268183-6268202 None:intergenic 50.0%
CTCCGTAACGGCTGTTGATA+AGG + chr3_3:6268813-6268832 None:intergenic 50.0%
GGAGATCATGAGACTAGGAG+AGG + chr3_3:6268959-6268978 None:intergenic 50.0%
CCAGAATTGGACAGCTGGAA+TGG + chr3_3:6268980-6268999 None:intergenic 50.0%
CCATTCCAGCTGTCCAATTC+TGG - chr3_3:6268977-6268996 Msa0439890:intron 50.0%
ATCAGTCACAGACACAGGGA+CGG + chr3_3:6269005-6269024 None:intergenic 50.0%
TCCCTGTGTCTGTGACTGAT+TGG - chr3_3:6269005-6269024 Msa0439890:intron 50.0%
GCCAATCAGTCACAGACACA+GGG + chr3_3:6269009-6269028 None:intergenic 50.0%
TGCCAATCAGTCACAGACAC+AGG + chr3_3:6269010-6269029 None:intergenic 50.0%
GCACCACTTGATTCAAGTGG+AGG - chr3_3:6269027-6269046 Msa0439890:intron 50.0%
! TAGTTGGTGCTCAGCCAACA+AGG - chr3_3:6269163-6269182 Msa0439890:intron 50.0%
GGATAGGAAGGCCAGGTAAA+TGG - chr3_3:6269213-6269232 Msa0439890:intron 50.0%
TAGATTCTGCTCGGCCAATG+AGG - chr3_3:6269313-6269332 Msa0439890:intron 50.0%
CCCCCTGCAATATCACCAAA+TGG + chr3_3:6270317-6270336 None:intergenic 50.0%
AGGGTTTAGGAGAAGAAGGG+AGG - chr3_3:6270664-6270683 Msa0439890:intron 50.0%
GGGTTTAGGAGAAGAAGGGA+GGG - chr3_3:6270665-6270684 Msa0439890:intron 50.0%
GGTTTAGGAGAAGAAGGGAG+GGG - chr3_3:6270666-6270685 Msa0439890:intron 50.0%
TTGGGTAGGAGGGTTTAGGA+GGG + chr3_3:6270859-6270878 None:intergenic 50.0%
TTTGGGTAGGAGGGTTTAGG+AGG + chr3_3:6270860-6270879 None:intergenic 50.0%
GTGTTTGGGTAGGAGGGTTT+AGG + chr3_3:6270863-6270882 None:intergenic 50.0%
GTCCAGTGTCTGTGCTTCAT+AGG + chr3_3:6270910-6270929 None:intergenic 50.0%
CGTGTTAGTATCCGACAACG+AGG + chr3_3:6270996-6271015 None:intergenic 50.0%
GTTAGACACCAGACACACCT+TGG - chr3_3:6271017-6271036 Msa0439890:intron 50.0%
GTTGTCCCACCTTGTAAGTC+TGG - chr3_3:6271205-6271224 Msa0439890:intron 50.0%
CCTCTACCAGACTTACAAGG+TGG + chr3_3:6271214-6271233 None:intergenic 50.0%
CCACCTTGTAAGTCTGGTAG+AGG - chr3_3:6271211-6271230 Msa0439890:intron 50.0%
!! CTTGATGGTGACTCTAACCC+AGG + chr3_3:6271270-6271289 None:intergenic 50.0%
! ATACCTTGAGGCGCCTACTC+GGG + chr3_3:6267955-6267974 None:intergenic 55.0%
! GATACCTTGAGGCGCCTACT+CGG + chr3_3:6267956-6267975 None:intergenic 55.0%
TTAGCCCCTTTGGGCCCTAT+GGG - chr3_3:6267984-6268003 Msa0439890:intron 55.0%
TTGGTCCCATAGGGCCCAAA+GGG + chr3_3:6267992-6268011 None:intergenic 55.0%
ATTGGTCCCATAGGGCCCAA+AGG + chr3_3:6267993-6268012 None:intergenic 55.0%
!! CTTCGAGTTGCCCATTTGGG+AGG + chr3_3:6268061-6268080 None:intergenic 55.0%
GGCTGGACTACCTCCCAAAT+GGG - chr3_3:6268127-6268146 Msa0439890:intron 55.0%
CTTTGAGTCGCCCATTTGGG+AGG + chr3_3:6268140-6268159 None:intergenic 55.0%
TCACAACGGATAGGAAGGCC+AGG - chr3_3:6269206-6269225 Msa0439890:intron 55.0%
TTAGGAGAAGAAGGGAGGGG+AGG - chr3_3:6270669-6270688 Msa0439890:intron 55.0%
TAGGAGAAGAAGGGAGGGGA+GGG - chr3_3:6270670-6270689 Msa0439890:intron 55.0%
AGGAGGGTTTAGGAGGGGAA+GGG + chr3_3:6270853-6270872 None:intergenic 55.0%
TAGGAGGGTTTAGGAGGGGA+AGG + chr3_3:6270854-6270873 None:intergenic 55.0%
TGGGTAGGAGGGTTTAGGAG+GGG + chr3_3:6270858-6270877 None:intergenic 55.0%
! TACCTTGAGGCGCCTACTCG+GGG + chr3_3:6267954-6267973 None:intergenic 60.0%
! GGCGCCTCAAGGTATCCTGA+CGG - chr3_3:6267960-6267979 Msa0439890:intron 60.0%
TCCTGACGGCTTAGCCCCTT+TGG - chr3_3:6267974-6267993 Msa0439890:intron 60.0%
CCTGACGGCTTAGCCCCTTT+GGG - chr3_3:6267975-6267994 Msa0439890:intron 60.0%
CTTAGCCCCTTTGGGCCCTA+TGG - chr3_3:6267983-6268002 Msa0439890:intron 60.0%
TGGTCCCATAGGGCCCAAAG+GGG + chr3_3:6267991-6268010 None:intergenic 60.0%
GGGCTGGACTACCTCCCAAA+TGG - chr3_3:6268126-6268145 Msa0439890:intron 60.0%
CGGAGCCAGAATTGGACAGC+TGG + chr3_3:6268985-6269004 None:intergenic 60.0%
CACAGGGACGGAGCCAGAAT+TGG + chr3_3:6268993-6269012 None:intergenic 60.0%
CTGCTCGGCCAATGAGGACA+TGG - chr3_3:6269319-6269338 Msa0439890:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr3_3:6270848-6270867 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr3_3:6270849-6270868 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr3_3:6270850-6270869 None:intergenic 60.0%
CCCAAAGGGGCTAAGCCGTC+AGG + chr3_3:6267978-6267997 None:intergenic 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr3_3:6270844-6270863 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr3_3:6270845-6270864 None:intergenic 65.0%
GACCCCGAGTAGGCGCCTCA+AGG - chr3_3:6267949-6267968 Msa0439890:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 6266809 6271719 6266809 ID=Msa0439890;Name=Msa0439890
chr3_3 mRNA 6266809 6271719 6266809 ID=Msa0439890-mRNA-1;Parent=Msa0439890;Name=Msa0439890-mRNA-1;_AED=0.17;_eAED=0.17;_QI=231|1|1|1|0.66|0.5|4|261|118
chr3_3 exon 6266809 6267125 6266809 ID=Msa0439890-mRNA-1:exon:1297;Parent=Msa0439890-mRNA-1
chr3_3 exon 6268139 6268309 6268139 ID=Msa0439890-mRNA-1:exon:1296;Parent=Msa0439890-mRNA-1
chr3_3 exon 6271252 6271459 6271252 ID=Msa0439890-mRNA-1:exon:1295;Parent=Msa0439890-mRNA-1
chr3_3 exon 6271567 6271719 6271567 ID=Msa0439890-mRNA-1:exon:1294;Parent=Msa0439890-mRNA-1
chr3_3 five_prime_UTR 6271567 6271719 6271567 ID=Msa0439890-mRNA-1:five_prime_utr;Parent=Msa0439890-mRNA-1
chr3_3 five_prime_UTR 6271382 6271459 6271382 ID=Msa0439890-mRNA-1:five_prime_utr;Parent=Msa0439890-mRNA-1
chr3_3 CDS 6271252 6271381 6271252 ID=Msa0439890-mRNA-1:cds;Parent=Msa0439890-mRNA-1
chr3_3 CDS 6268139 6268309 6268139 ID=Msa0439890-mRNA-1:cds;Parent=Msa0439890-mRNA-1
chr3_3 CDS 6267070 6267125 6267070 ID=Msa0439890-mRNA-1:cds;Parent=Msa0439890-mRNA-1
chr3_3 three_prime_UTR 6266809 6267069 6266809 ID=Msa0439890-mRNA-1:three_prime_utr;Parent=Msa0439890-mRNA-1
Gene Sequence

>Msa0439890

ATGCCGGAAGAAGATTTGGTTGATATCAAGTTTAGGTTATACGATGGTTCTGATATTGGACCCTTTAGGTATTCATCTGCTGCTACTGTTGATATGCTTAAGCAAAGAATTGTCTCTGATTGGCCTAAAGGCAAAACGTTTCTGCCAAAGTCAGCAAATGAAGTGAAATTGATTAGTTCTGGTAAAATATTGGAAAACAACAAGACTGTTGGTCAGTGTAAAGCACCATTTGGTGATATTGCAGGGGGAGTTATAATCATGCATGTTGTTGTACAGCCATCTCTAGCAAAATCTAAGGCTGAGAAGAAGGTTGACGATTCATCCAAGAAGGTTGTCTGTTCTTGTTCTATAATGTGA

Protein sequence

>Msa0439890

MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPKGKTFLPKSANEVKLISSGKILENNKTVGQCKAPFGDIAGGVIIMHVVVQPSLAKSKAEKKVDDSSKKVVCSCSIM*