AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549790 MtrunA17_Chr4g0034491 96.433 757 14 1 1 744 1 757 0.0 1497
Msa0549790 MtrunA17_Chr4g0019701 66.221 299 84 6 6 296 6 295 7.62e-117 370
Msa0549790 MtrunA17_Chr4g0019701 42.776 353 171 14 395 740 451 779 3.92e-54 199
Msa0549790 MtrunA17_Chr4g0067151 30.350 257 155 13 13 253 73 321 2.28e-20 93.2
Msa0549790 MtrunA17_Chr4g0067151 32.787 183 104 8 128 291 7 189 5.81e-13 70.9
Msa0549790 MtrunA17_Chr1g0185501 29.457 258 156 13 13 253 64 312 1.26e-14 75.5
Msa0549790 MtrunA17_Chr8g0392701 27.673 318 164 15 10 308 7 277 1.82e-14 75.5
Msa0549790 MtrunA17_Chr2g0281451 28.889 180 118 7 84 253 32 211 2.66e-14 77.0
Msa0549790 MtrunA17_Chr6g0448921 28.177 181 120 7 83 253 32 212 5.56e-14 75.9
Msa0549790 MtrunA17_Chr5g0401671 25.556 270 173 11 34 283 321 582 6.95e-14 75.1
Msa0549790 MtrunA17_Chr1g0172501 33.854 192 107 8 34 214 371 553 6.98e-14 75.1
Msa0549790 MtrunA17_Chr1g0172501 27.132 258 169 11 14 260 310 559 1.31e-12 71.2
Msa0549790 MtrunA17_Chr3g0093681 33.854 192 107 8 34 214 371 553 1.25e-13 74.3
Msa0549790 MtrunA17_Chr3g0093681 27.132 258 169 11 14 260 310 559 5.37e-13 72.4
Msa0549790 MtrunA17_Chr4g0059031 27.273 264 164 10 14 255 398 655 1.52e-13 74.7
Msa0549790 MtrunA17_Chr5g0401661 25.455 275 177 10 29 283 406 672 2.81e-13 73.6
Msa0549790 MtrunA17_Chr2g0295791 24.176 273 182 10 10 265 204 468 3.15e-13 72.8
Msa0549790 MtrunA17_Chr2g0295791 25.890 309 195 15 5 291 160 456 2.06e-11 67.0
Msa0549790 MtrunA17_Chr8g0390861 27.778 234 153 8 30 255 880 1105 4.05e-13 73.6
Msa0549790 MtrunA17_Chr8g0390861 23.944 284 176 8 102 361 849 1116 1.67e-11 68.2
Msa0549790 MtrunA17_Chr1g0148791 25.424 236 149 8 34 254 679 902 1.41e-12 71.6
Msa0549790 MtrunA17_Chr5g0405851 32.812 192 109 8 34 214 268 450 1.64e-12 70.5
Msa0549790 MtrunA17_Chr5g0405851 27.848 237 152 11 31 256 224 452 1.88e-11 67.0
Msa0549790 MtrunA17_Chr8g0383711 25.168 298 189 12 14 291 14 297 1.65e-12 68.9
Msa0549790 MtrunA17_Chr2g0331981 29.688 192 116 9 34 213 72 256 3.43e-12 70.1
Msa0549790 MtrunA17_Chr3g0138311 25.974 231 150 8 34 254 678 897 7.26e-12 69.3
Msa0549790 MtrunA17_Chr4g0004241 29.167 192 117 9 34 213 72 256 8.17e-12 68.9
Msa0549790 MtrunA17_Chr2g0331341 29.279 222 119 14 109 293 3 223 8.62e-12 66.2
Msa0549790 MtrunA17_Chr2g0285951 27.320 194 112 8 17 190 29 213 5.60e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549790 AT3G18860.1 68.158 760 223 5 1 743 3 760 0.0 1103
Msa0549790 AT3G18860.2 68.158 760 223 5 1 743 3 760 0.0 1102
Msa0549790 AT3G49660.1 30.196 255 156 12 13 253 66 312 8.15e-24 103
Msa0549790 AT3G49660.1 27.451 306 201 12 5 292 11 313 6.50e-14 73.9
Msa0549790 AT4G02730.1 28.409 264 166 12 7 254 74 330 7.12e-18 86.3
Msa0549790 AT1G49040.1 29.148 223 145 9 81 291 868 1089 2.65e-15 80.9
Msa0549790 AT1G49040.1 28.980 245 154 10 30 262 866 1102 1.03e-14 79.0
Msa0549790 AT1G49040.1 28.148 270 161 11 4 253 925 1181 1.59e-14 78.6
Msa0549790 AT4G32551.2 27.948 229 152 6 34 254 746 969 8.12e-15 79.3
Msa0549790 AT4G32551.1 27.948 229 152 6 34 254 708 931 9.13e-15 79.0
Msa0549790 AT2G41500.1 29.004 231 145 11 34 253 313 535 6.14e-14 75.9
Msa0549790 AT2G41500.2 29.004 231 145 11 34 253 313 535 6.14e-14 75.9
Msa0549790 AT5G23430.3 28.729 181 119 7 83 253 32 212 3.48e-13 73.9
Msa0549790 AT5G23430.2 28.729 181 119 7 83 253 32 212 3.48e-13 73.9
Msa0549790 AT5G23430.1 28.729 181 119 7 83 253 32 212 3.48e-13 73.9
Msa0549790 AT1G48630.1 27.481 262 164 11 10 253 7 260 7.12e-13 70.9
Msa0549790 AT1G24530.1 28.704 216 119 8 109 294 194 404 2.08e-12 70.5
Msa0549790 AT1G52360.4 29.167 192 117 9 34 213 72 256 2.33e-12 71.2
Msa0549790 AT1G52360.1 29.167 192 117 9 34 213 72 256 2.33e-12 71.2
Msa0549790 AT3G18130.1 27.481 262 164 11 10 253 7 260 2.62e-12 69.3
Msa0549790 AT1G52360.2 29.167 192 117 9 34 213 116 300 2.63e-12 71.2
Msa0549790 AT1G52360.3 29.167 192 117 9 34 213 72 256 2.74e-12 70.9
Msa0549790 AT5G52820.1 26.596 282 158 10 59 291 190 471 5.12e-12 69.3
Msa0549790 AT1G61210.3 27.222 180 121 7 84 253 32 211 1.26e-11 68.9
Msa0549790 AT1G18080.1 29.583 240 141 12 10 229 7 238 1.29e-11 67.0
Msa0549790 AT2G32700.7 23.913 230 157 9 34 254 586 806 1.56e-11 68.6
Msa0549790 AT1G61210.2 27.222 180 121 7 84 253 32 211 1.79e-11 68.6
Msa0549790 AT1G61210.1 27.222 180 121 7 84 253 32 211 1.80e-11 68.6
Msa0549790 AT2G32700.2 23.913 230 157 9 34 254 567 787 1.90e-11 68.2
Msa0549790 AT2G32700.5 23.913 230 157 9 34 254 567 787 1.90e-11 68.2
Msa0549790 AT2G32700.1 23.913 230 157 9 34 254 567 787 1.90e-11 68.2
Msa0549790 AT2G32700.4 23.913 230 157 9 34 254 567 787 1.90e-11 68.2
Msa0549790 AT2G32700.3 23.913 230 157 9 34 254 567 787 1.90e-11 68.2
Msa0549790 AT2G32700.6 23.913 230 157 9 34 254 565 785 1.93e-11 68.2
Msa0549790 AT1G79990.2 31.361 169 99 8 57 213 93 256 2.50e-11 67.8
Msa0549790 AT1G79990.1 31.361 169 99 8 57 213 93 256 2.71e-11 67.8
Msa0549790 AT1G49040.3 27.746 173 102 5 103 253 836 1007 2.89e-11 67.8
Msa0549790 AT1G11160.4 26.519 181 123 7 83 253 31 211 5.41e-11 67.0
Msa0549790 AT1G11160.2 26.519 181 123 7 83 253 31 211 6.03e-11 66.6
Msa0549790 AT1G11160.1 26.519 181 123 7 83 253 31 211 6.04e-11 66.6
Msa0549790 AT5G64730.1 23.891 293 199 11 14 291 14 297 8.61e-11 64.3

Find 189 sgRNAs with CRISPR-Local

Find 820 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGGAATCGTTGGGTTTA+TGG 0.150998 4_1:+45002022 None:intergenic
TGTTTGGGATACAAAATTTA+TGG 0.153293 4_1:-45007301 Msa0549790:CDS
GATACAAAATTTATGGAAAA+TGG 0.165551 4_1:-45007294 Msa0549790:CDS
ACTACAGTTCTCTGAGATTA+TGG 0.176090 4_1:-45008103 Msa0549790:intron
ATTAATAACCCAAAAGTAAT+TGG 0.188672 4_1:+44998480 None:intergenic
CCACACGGTGGTGTTGTTTC+TGG 0.196876 4_1:-45009968 Msa0549790:CDS
AAGCTGAATCCAATTACTTT+TGG 0.209562 4_1:-44998489 Msa0549790:exon
TTCAGATTCTGCAAATTTAC+TGG 0.225599 4_1:+45002973 None:intergenic
AGCAACTAAAGCACGAAATT+TGG 0.240275 4_1:+44999217 None:intergenic
GAGGGTTGGAGGATTGAAAT+TGG 0.276314 4_1:-45006844 Msa0549790:CDS
CATATGATGCTGCTGATAAA+TGG 0.284265 4_1:-45005310 Msa0549790:CDS
GCATCAAATGCAGAGTTAAT+TGG 0.288447 4_1:-44998302 Msa0549790:three_prime_UTR
GCCTACCTGGTCGGATAATA+AGG 0.288926 4_1:+45003790 None:intergenic
GAGAAGGTGCAGAGTCTTAA+AGG 0.307254 4_1:-45009902 Msa0549790:CDS
AATGCAGAGTTAATTGGAAT+TGG 0.308994 4_1:-44998296 Msa0549790:three_prime_UTR
GGATACTCTTGTGTTGGTTT+GGG 0.315804 4_1:-45009939 Msa0549790:CDS
CGTGAAGTTCACAGCGTAAT+TGG 0.317010 4_1:+45010179 None:intergenic
AGTGCTATTGATTGAATCTA+AGG 0.317141 4_1:-45000226 Msa0549790:CDS
ATACAAAATTTATGGAAAAT+GGG 0.317845 4_1:-45007293 Msa0549790:CDS
GATGGTGTTCAGTATGATTA+TGG 0.317950 4_1:-45006405 Msa0549790:intron
TAGAGCATCCTGGTTGTGTT+TGG 0.330251 4_1:-45007317 Msa0549790:CDS
GGTCATCAATTGCAGGTTAC+TGG 0.336331 4_1:-45009881 Msa0549790:CDS
TGGATACTCTTGTGTTGGTT+TGG 0.338280 4_1:-45009940 Msa0549790:CDS
TTTGATACTGCTCAATTTGA+TGG 0.343640 4_1:-45003845 Msa0549790:CDS
TTGGAGATGGTATGCCTATC+AGG 0.348798 4_1:-45006279 Msa0549790:CDS
ACACCACCGTGTGGCAAATC+AGG 0.349373 4_1:+45009977 None:intergenic
TTGTTTCTTCTTCTATTGAT+TGG 0.352712 4_1:-45009835 Msa0549790:intron
AGTAAGTGGTGAAGTGTTAA+TGG 0.353713 4_1:-45008078 Msa0549790:CDS
CCCACAGGAGAGCTTGTTAC+AGG 0.356136 4_1:-45008827 Msa0549790:intron
ACGCATTTGGACTGTAAATC+AGG 0.364122 4_1:-45007238 Msa0549790:CDS
TCAGTGTTTGATGTGGATAT+TGG 0.367485 4_1:-45006298 Msa0549790:intron
ATCTTGATCGGACGGCTCTA+AGG 0.371747 4_1:+44998010 None:intergenic
AGATCCTACTTCAGCAATCT+TGG 0.375918 4_1:+44998535 None:intergenic
CTGAATAAACAATTGCAGTA+TGG 0.377369 4_1:+45008045 None:intergenic
TGAAGTGCAATAGCCCCGTC+TGG 0.377385 4_1:+45002700 None:intergenic
AGAGGGCGATTTGATTCTTC+CGG 0.381445 4_1:+45006432 None:intergenic
TTTGTACCTGATCGGTTGTA+TGG 0.382114 4_1:+45006250 None:intergenic
AGAGCATCCTGGTTGTGTTT+GGG 0.384125 4_1:-45007316 Msa0549790:CDS
AGAATTCATGCTTCTACAAC+TGG 0.385701 4_1:-45001959 Msa0549790:CDS
CTACAGTTCTCTGAGATTAT+GGG 0.388543 4_1:-45008102 Msa0549790:intron
CCAACCACAATGATATTTCC+TGG 0.389390 4_1:-45002917 Msa0549790:intron
TACTGAATATGCTATCTTCA+TGG 0.394037 4_1:-45002940 Msa0549790:CDS
GGAACATGGCAGAACAGAAA+TGG 0.394356 4_1:-45006597 Msa0549790:CDS
CTGATGGAATTGTACGCATT+TGG 0.398577 4_1:-45007251 Msa0549790:CDS
AAAAGCAGCAAAGGGTTCTA+AGG 0.399602 4_1:-44998561 Msa0549790:CDS
TTGAAGAAGCAAAGGACTTT+GGG 0.402515 4_1:-45010278 Msa0549790:five_prime_UTR
CAGTTCATACTTCAAAATAC+TGG 0.403359 4_1:-45005242 Msa0549790:CDS
ATTTCTTGTGTAGTACTTTG+AGG 0.407655 4_1:-45008922 Msa0549790:intron
GTCTTGAACAAGGTTCTTGT+AGG 0.407719 4_1:-45010043 Msa0549790:CDS
TTTAGTTGCTGTTGGATCAC+TGG 0.408298 4_1:-44999204 Msa0549790:intron
GCATGAATTCTTAAAGAGAT+TGG 0.411971 4_1:+45001971 None:intergenic
GTTGAAGAAGCAAAGGACTT+TGG 0.412470 4_1:-45010279 Msa0549790:five_prime_UTR
TGTGTGCACGTGTCTGATTA+TGG 0.415268 4_1:+44998382 None:intergenic
GTGTGTTAATCAGTGGGAAT+TGG 0.417163 4_1:-44998061 Msa0549790:three_prime_UTR
ATACTAGTCAACAGATTTGC+AGG 0.427032 4_1:+45002005 None:intergenic
TCAGTTGATTCACATGCATC+AGG 0.432496 4_1:-45008026 Msa0549790:CDS
TGTGTAGTACTTTGAGGAGG+TGG 0.434586 4_1:-45008916 Msa0549790:intron
TTGAAATTGGAGGAGTTACC+AGG 0.436590 4_1:-45006831 Msa0549790:CDS
TTGGCTGTGATGTCTGATCT+TGG 0.438344 4_1:-45008249 Msa0549790:CDS
AAAGCACGAAATTTGGAATC+AGG 0.440555 4_1:+44999224 None:intergenic
CTTTGAGGAGGTGGAGGAAT+GGG 0.444827 4_1:-45008907 Msa0549790:CDS
TTTAACAATGGCATCCAGTC+TGG 0.446187 4_1:+45003024 None:intergenic
TTTCTCAATACAAGTCTAGT+AGG 0.451806 4_1:-45007170 Msa0549790:intron
TTTCGTGCTTTAGTTGCTGT+TGG 0.452911 4_1:-44999212 Msa0549790:CDS
AAGATTGGTGAAGTTGTTGA+TGG 0.453927 4_1:-45006456 Msa0549790:CDS
TTGTATGGCAACTTCCTGAT+AGG 0.456527 4_1:+45006265 None:intergenic
TTCCGCGAACGTCGTCTTCG+TGG 0.457119 4_1:+45010155 None:intergenic
GTGACAAAACGGTTAGGTTA+TGG 0.457307 4_1:-45010087 Msa0549790:CDS
ATTGGAGGAGTTACCAGGCT+TGG 0.459142 4_1:-45006826 Msa0549790:CDS
AACAGATTTGCAGGAATCGT+TGG 0.461890 4_1:+45002014 None:intergenic
TACAGATACTGTTCGTGGCT+TGG 0.462670 4_1:-45008268 Msa0549790:intron
ACAGATTTGCAGGAATCGTT+GGG 0.462737 4_1:+45002015 None:intergenic
TATGCTAGAAAGAGGGTTGG+AGG 0.463864 4_1:-45006855 Msa0549790:intron
GAAGTTGTCTTTGACCGAGT+TGG 0.465297 4_1:-45003053 Msa0549790:CDS
GCCGTTGTCGCCGCCGCAGA+TGG 0.466421 4_1:+45010129 None:intergenic
TGGTAATTCTTCACCCAGAC+GGG 0.468152 4_1:-45002714 Msa0549790:CDS
CAATTACGCTGTGAACTTCA+CGG 0.469838 4_1:-45010178 Msa0549790:CDS
AGCTTTATAACTGCTTGAAT+CGG 0.476468 4_1:+45008851 None:intergenic
TCTTAAAGGTCATCAATTGC+AGG 0.479911 4_1:-45009888 Msa0549790:CDS
ACTGGTATTGTGGTTGATGA+TGG 0.480401 4_1:-45009863 Msa0549790:CDS
GTGTGCACGTGTCTGATTAT+GGG 0.482045 4_1:+44998383 None:intergenic
TTCGGTGGAATCCATGATAT+AGG 0.482787 4_1:+45010001 None:intergenic
GTTGTCAGAGAGGGAGATAA+CGG 0.489482 4_1:-45006634 Msa0549790:CDS
TTAGGAATATGCTTGAAAGT+AGG 0.492360 4_1:+45004682 None:intergenic
TTGATACTGCTCAATTTGAT+GGG 0.492366 4_1:-45003844 Msa0549790:CDS
AACCTCATCGCGTGACAAAA+CGG 0.497021 4_1:-45010098 Msa0549790:CDS
CCGTGTGGCAAATCAGGGTT+CGG 0.498948 4_1:+45009983 None:intergenic
AAATGCATTGAATAATGAAA+GGG 0.499063 4_1:+44998354 None:intergenic
GAACATGGCAGAACAGAAAT+GGG 0.499199 4_1:-45006596 Msa0549790:CDS
TGGTGTTGTTTCTGGTGGTA+TGG 0.501443 4_1:-45009960 Msa0549790:CDS
CTCTCTCGCTCTCTCTAGAA+TGG 0.502896 4_1:-45010221 Msa0549790:exon
TCCTATCTGCATCTCATGAT+GGG 0.503124 4_1:-45008224 Msa0549790:intron
AGCATTGCAAAAGCAGCAAA+GGG 0.507494 4_1:-44998569 Msa0549790:CDS
TACAAAATTTATGGAAAATG+GGG 0.508270 4_1:-45007292 Msa0549790:CDS
TACTTTCAAGCATATTCCTA+AGG 0.508389 4_1:-45004680 Msa0549790:intron
ATCCTATCTGCATCTCATGA+TGG 0.509522 4_1:-45008225 Msa0549790:CDS
GAGCATTGCAAAAGCAGCAA+AGG 0.509606 4_1:-44998570 Msa0549790:CDS
ATCTTCAGTGTATCCAAGCC+TGG 0.510656 4_1:+45006813 None:intergenic
TGGTATGGATACTCTTGTGT+TGG 0.512548 4_1:-45009945 Msa0549790:CDS
TTGGTTTGGGACTTGAATAG+TGG 0.519590 4_1:-45009926 Msa0549790:CDS
ATTTATGCTAGAAAGAGGGT+TGG 0.520811 4_1:-45006858 Msa0549790:intron
ACCCATCATGAGATGCAGAT+AGG 0.520890 4_1:+45008223 None:intergenic
TGTATAAATCAAGCTCTAGC+TGG 0.521315 4_1:+45007202 None:intergenic
AGAGACATGGGAGGCTCACA+AGG 0.527540 4_1:-45008876 Msa0549790:CDS
CTTGAGTATCAATGTAGAGT+AGG 0.528560 4_1:+45001416 None:intergenic
ACCATCTGCGGCGGCGACAA+CGG 0.529117 4_1:-45010130 Msa0549790:CDS
AAAATGCATTGAATAATGAA+AGG 0.535676 4_1:+44998353 None:intergenic
GTAGTACTTTGAGGAGGTGG+AGG 0.537286 4_1:-45008913 Msa0549790:intron
GTTAAATAGATTGTCAGAGA+TGG 0.540202 4_1:+44998119 None:intergenic
ACTTTGAGGAGGTGGAGGAA+TGG 0.546137 4_1:-45008908 Msa0549790:CDS
AAGTTGCCATACAACCGATC+AGG 0.546615 4_1:-45006256 Msa0549790:intron
CATCGCGTGACAAAACGGTT+AGG 0.555894 4_1:-45010093 Msa0549790:CDS
TGGTGAAGTTGTTGATGGAC+CGG 0.556485 4_1:-45006451 Msa0549790:CDS
GTTAATTTATGCTAGAAAGA+GGG 0.556604 4_1:-45006862 Msa0549790:intron
TGTTCTATCAGCAGCACTTG+AGG 0.557792 4_1:-45000184 Msa0549790:intron
GGTTGGAGGATTGAAATTGG+AGG 0.557821 4_1:-45006841 Msa0549790:CDS
TGGTGAAGTGTTAATGGAGA+TGG 0.558610 4_1:-45008072 Msa0549790:CDS
TCAAATCGCCCTCTCTTCGA+TGG 0.558656 4_1:-45006423 Msa0549790:CDS
ACCTGTAACAAGCTCTCCTG+TGG 0.558940 4_1:+45008826 None:intergenic
TTGTACTTACAGCCGGTGTA+CGG 0.561463 4_1:+45005182 None:intergenic
TCGCAAATTCGTCTTGAACA+AGG 0.562186 4_1:-45010053 Msa0549790:CDS
TTGGATACACTGAAGATCCC+AGG 0.564786 4_1:-45006807 Msa0549790:intron
ATTGCAGGTTACTGGTATTG+TGG 0.567738 4_1:-45009873 Msa0549790:CDS
ATTGTGACAGCATGTTCTGA+TGG 0.570097 4_1:-45007267 Msa0549790:CDS
GAAGGAGGTTGAAGAAGCAA+AGG 0.570201 4_1:-45010286 Msa0549790:five_prime_UTR
AAGAGAATATATAGGGAAGG+AGG 0.570937 4_1:-45010301 Msa0549790:five_prime_UTR
CCAGGAAATATCATTGTGGT+TGG 0.571275 4_1:+45002917 None:intergenic
CTGAGATTATGGGCAGTAAG+TGG 0.572984 4_1:-45008092 Msa0549790:CDS
ATAACGGAGTTGCGTATGCA+TGG 0.573334 4_1:-45006618 Msa0549790:CDS
GGCCACGAAGACGACGTTCG+CGG 0.576951 4_1:-45010157 Msa0549790:CDS
GAAGCAAAGGACTTTGGGTA+AGG 0.577694 4_1:-45010273 Msa0549790:five_prime_UTR
ACTTGCTCACGAAAAGAAAG+AGG 0.579161 4_1:+45005269 None:intergenic
AGTAATTGATATTACAAGGA+TGG 0.580730 4_1:-45002734 Msa0549790:CDS
TGGCTATTCAGTGTTTGATG+TGG 0.585313 4_1:-45006305 Msa0549790:intron
CACCACCGTGTGGCAAATCA+GGG 0.586231 4_1:+45009978 None:intergenic
ATGCAGTAATTGATATTACA+AGG 0.586946 4_1:-45002738 Msa0549790:intron
CCGAACCCTGATTTGCCACA+CGG 0.587140 4_1:-45009983 Msa0549790:CDS
TATAGACGTGTGTTAATCAG+TGG 0.587560 4_1:-44998068 Msa0549790:three_prime_UTR
TTTGTATCCCAAACACAACC+AGG 0.587884 4_1:+45007309 None:intergenic
GTTCAGAGCATAGAGCATCC+TGG 0.589154 4_1:-45007327 Msa0549790:CDS
CACGGTGGTGTTGTTTCTGG+TGG 0.591121 4_1:-45009965 Msa0549790:CDS
ATGGGCAATGCATAGAGACA+TGG 0.594108 4_1:-45008889 Msa0549790:CDS
TAATAAGGCATTATTGAACT+CGG 0.595227 4_1:+45003805 None:intergenic
ATTGAATCTAAGGATCAAGA+AGG 0.596449 4_1:-45000216 Msa0549790:CDS
GAATGTACAGATACTGTTCG+TGG 0.597426 4_1:-45008273 Msa0549790:intron
GAAGTGCAATAGCCCCGTCT+GGG 0.600322 4_1:+45002701 None:intergenic
TGCTGATAAATGGCTACTCA+AGG 0.601467 4_1:-45005300 Msa0549790:CDS
TCATTTCGTGATCCGTACAC+CGG 0.603848 4_1:-45005194 Msa0549790:CDS
ATCTGCGGCGGCGACAACGG+CGG 0.605668 4_1:-45010127 Msa0549790:CDS
CAGTCTGGTAAAATCCAACT+CGG 0.608266 4_1:+45003039 None:intergenic
TTGTGAACAGGAACTTCTGA+TGG 0.608359 4_1:-45006667 Msa0549790:intron
CCAAACAAAAGTTGTCAGAG+AGG 0.608732 4_1:-45006644 Msa0549790:CDS
ACTGAACACCATCGAAGAGA+GGG 0.608786 4_1:+45006415 None:intergenic
ATGGTAATTCTTCACCCAGA+CGG 0.609330 4_1:-45002715 Msa0549790:CDS
AATTGGATTATATGCAGTCG+AGG 0.610932 4_1:-44998044 Msa0549790:three_prime_UTR
GTGACACTACTTTAAAGACC+TGG 0.611314 4_1:-45008663 Msa0549790:CDS
TGATAAATGGCTACTCAAGG+AGG 0.613548 4_1:-45005297 Msa0549790:CDS
TAATGCCTTATTATCCGACC+AGG 0.616392 4_1:-45003795 Msa0549790:intron
AGATAGCATATTCAGTAGCA+AGG 0.619959 4_1:+45002946 None:intergenic
TCTTGTGTAGTACTTTGAGG+AGG 0.621080 4_1:-45008919 Msa0549790:intron
CAAACAAAAGTTGTCAGAGA+GGG 0.623484 4_1:-45006643 Msa0549790:CDS
TTTGATGTGGATATTGGAGA+TGG 0.624587 4_1:-45006292 Msa0549790:CDS
CCTGTAACAAGCTCTCCTGT+GGG 0.625764 4_1:+45008827 None:intergenic
TGGGCAATGCATAGAGACAT+GGG 0.626538 4_1:-45008888 Msa0549790:CDS
ATAGACGTGTGTTAATCAGT+GGG 0.628206 4_1:-44998067 Msa0549790:three_prime_UTR
TACTGAACACCATCGAAGAG+AGG 0.628823 4_1:+45006414 None:intergenic
TGTGGCAAATCAGGGTTCGG+TGG 0.629930 4_1:+45009986 None:intergenic
GGACTTGAATAGTGGTGAGA+AGG 0.631251 4_1:-45009918 Msa0549790:CDS
ACTACTTTAAAGACCTGGAA+GGG 0.635641 4_1:-45008658 Msa0549790:CDS
GACTCCAAGATTGCTGAAGT+AGG 0.638044 4_1:-44998539 Msa0549790:CDS
TAATCAGACACGTGCACACA+TGG 0.638294 4_1:-44998379 Msa0549790:three_prime_UTR
GATAAATGGCTACTCAAGGA+GGG 0.639126 4_1:-45005296 Msa0549790:CDS
GCAGTTATAAAGCTACCCAC+AGG 0.640686 4_1:-45008842 Msa0549790:CDS
CACTACTTTAAAGACCTGGA+AGG 0.647189 4_1:-45008659 Msa0549790:CDS
GCATCAGGACTTATTGTCAG+TGG 0.647307 4_1:-45008011 Msa0549790:CDS
CGCGGAATAACCATCTGCGG+CGG 0.647933 4_1:-45010139 Msa0549790:CDS
AGTTGCGTATGCATGGAACA+TGG 0.650590 4_1:-45006611 Msa0549790:CDS
GAGACATGGGAGGCTCACAA+GGG 0.670228 4_1:-45008875 Msa0549790:CDS
AATCATGTAGCCTACCTGGT+CGG 0.670619 4_1:+45003781 None:intergenic
GGTAATTCTTCACCCAGACG+GGG 0.681729 4_1:-45002713 Msa0549790:CDS
AGACATGGGAGGCTCACAAG+GGG 0.691916 4_1:-45008874 Msa0549790:CDS
AACCCTGATTTGCCACACGG+TGG 0.695182 4_1:-45009980 Msa0549790:CDS
CTAACCAGGAAATATCATTG+TGG 0.698335 4_1:+45002913 None:intergenic
GATTGTCGAGGATGAAAACG+TGG 0.708560 4_1:-44999249 Msa0549790:CDS
GTTCGCGGAATAACCATCTG+CGG 0.717853 4_1:-45010142 Msa0549790:CDS
CCAGAAACAACACCACCGTG+TGG 0.726363 4_1:+45009968 None:intergenic
GAAGTGTTAATGGAGATGGT+TGG 0.733230 4_1:-45008068 Msa0549790:CDS
GTTGCAGAAACATCGCAGTG+AGG 0.746482 4_1:-45001937 Msa0549790:intron
GCAATGCATAGAGACATGGG+AGG 0.774744 4_1:-45008885 Msa0549790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAGTATAAAAAATATAAAAT+TGG - chr4_1:44998048-44998067 Msa0549790:three_prime_UTR 10.0%
!!! ATTTTATAAGAAAAAGAAAA+TGG - chr4_1:45000857-45000876 Msa0549790:intron 10.0%
!! TTATAAACTTTAAATAATTC+AGG + chr4_1:45006619-45006638 None:intergenic 10.0%
!! ATTTATTTCAATATATACAT+TGG - chr4_1:45006776-45006795 Msa0549790:intron 10.0%
!! ATTCTATAACAATATATAAT+GGG + chr4_1:45007726-45007745 None:intergenic 10.0%
!! TATTCTATAACAATATATAA+TGG + chr4_1:45007727-45007746 None:intergenic 10.0%
!!! AAATTATGTATTGAAATTTT+GGG + chr4_1:45008376-45008395 None:intergenic 10.0%
!!! AAAATTATGTATTGAAATTT+TGG + chr4_1:45008377-45008396 None:intergenic 10.0%
!!! AAAAGATAAACATATTTTAT+AGG - chr4_1:45008896-45008915 Msa0549790:CDS 10.0%
!!! AAAGATAAACATATTTTATA+GGG - chr4_1:45008897-45008916 Msa0549790:CDS 10.0%
!!! TTGGTAAATTTAATTTTATA+TGG - chr4_1:45010237-45010256 Msa0549790:five_prime_UTR 10.0%
!!! TGGTAAATTTAATTTTATAT+GGG - chr4_1:45010238-45010257 Msa0549790:five_prime_UTR 10.0%
!! AAAAGAAAAAGAGAATATAT+AGG - chr4_1:44998125-44998144 Msa0549790:three_prime_UTR 15.0%
!! AAAGAAAAAGAGAATATATA+GGG - chr4_1:44998126-44998145 Msa0549790:three_prime_UTR 15.0%
!! TATTTATATTCTCACATATT+AGG - chr4_1:44999743-44999762 Msa0549790:intron 15.0%
!!! ATAACTTATAGTTTTTTGTT+TGG - chr4_1:44999896-44999915 Msa0549790:intron 15.0%
!!! ACTTTGTTTTCTTTATATTT+TGG - chr4_1:44999960-44999979 Msa0549790:intron 15.0%
!! TCAATATTTATTAAATCTAG+AGG + chr4_1:45000258-45000277 None:intergenic 15.0%
!!! CTTATTTCTATTTTATATTG+AGG - chr4_1:45000800-45000819 Msa0549790:intron 15.0%
!! ATACAAAATTTATGGAAAAT+GGG - chr4_1:45001141-45001160 Msa0549790:intron 15.0%
!! TTTAAAAACAAAACAAAAAC+AGG + chr4_1:45001479-45001498 None:intergenic 15.0%
!!! ACTGTAAAATCTTTTATATT+TGG + chr4_1:45001926-45001945 None:intergenic 15.0%
!!! AATATAAAAGATTTTACAGT+CGG - chr4_1:45001926-45001945 Msa0549790:intron 15.0%
!!! ATTTATTTTTTCCTAAAGAT+TGG - chr4_1:45001963-45001982 Msa0549790:CDS 15.0%
!!! ATTCTAATAAAGTTTACTTT+TGG - chr4_1:45002109-45002128 Msa0549790:intron 15.0%
!! GTTGAAAAAATGAATTTATA+TGG - chr4_1:45002309-45002328 Msa0549790:intron 15.0%
!! ATGTAATATGTAATGTTAAA+AGG - chr4_1:45004712-45004731 Msa0549790:intron 15.0%
!! TGTAATATGTAATGTTAAAA+GGG - chr4_1:45004713-45004732 Msa0549790:intron 15.0%
!!! TATTTCTAAAAAAATCTGTT+TGG - chr4_1:45004842-45004861 Msa0549790:intron 15.0%
!!! AAAAGTATTTAAAATTCCAT+AGG - chr4_1:45004916-45004935 Msa0549790:intron 15.0%
!!! GGTTTATATTTTATATCAAA+GGG + chr4_1:45005171-45005190 None:intergenic 15.0%
!! ATAAAATAAATTTGATCCAA+TGG + chr4_1:45005597-45005616 None:intergenic 15.0%
!!! AAACCATAAAAAAAGTTTTA+AGG - chr4_1:45006186-45006205 Msa0549790:intron 15.0%
!!! ATGGTTTTTAAATAAGAAAA+GGG + chr4_1:45006847-45006866 None:intergenic 15.0%
!!! AATGGTTTTTAAATAAGAAA+AGG + chr4_1:45006848-45006867 None:intergenic 15.0%
!!! TCTTCAAAAAAATCTTTTTT+GGG + chr4_1:45007291-45007310 None:intergenic 15.0%
!!! TTCTTCAAAAAAATCTTTTT+TGG + chr4_1:45007292-45007311 None:intergenic 15.0%
!!! TGTAAAATTAGTTTTTTGAA+AGG + chr4_1:45007438-45007457 None:intergenic 15.0%
!! TTCTATAACAATATATAATG+GGG + chr4_1:45007725-45007744 None:intergenic 15.0%
!!! AAGTAATAGGAATATTTTAT+TGG + chr4_1:45007755-45007774 None:intergenic 15.0%
!! TAGTAAGTAATGAATTAATA+GGG + chr4_1:45007783-45007802 None:intergenic 15.0%
!! TTAGTAAGTAATGAATTAAT+AGG + chr4_1:45007784-45007803 None:intergenic 15.0%
!!! TTTTGTTACTTTTAGTTTTA+GGG + chr4_1:45008880-45008899 None:intergenic 15.0%
!! AGTTTGAAAATAATTAATAG+TGG + chr4_1:45009543-45009562 None:intergenic 15.0%
!!! TATTGATTTTTCTTTAGTAT+TGG - chr4_1:45010218-45010237 Msa0549790:exon 15.0%
!!! TACAGGTATTTATACATTTT+CGG - chr4_1:44999624-44999643 Msa0549790:intron 20.0%
!!! ATTTTGTCATCGATTTATAA+TGG - chr4_1:44999873-44999892 Msa0549790:intron 20.0%
!! GATACAAAATTTATGGAAAA+TGG - chr4_1:45001140-45001159 Msa0549790:intron 20.0%
!! TACAAAATTTATGGAAAATG+GGG - chr4_1:45001142-45001161 Msa0549790:intron 20.0%
!! AAAATGAAATCAGTTATTCA+CGG + chr4_1:45001414-45001433 None:intergenic 20.0%
!!! AATAACTGATTTCATTTTCT+TGG - chr4_1:45001416-45001435 Msa0549790:intron 20.0%
!!! ATAACTGATTTCATTTTCTT+GGG - chr4_1:45001417-45001436 Msa0549790:CDS 20.0%
!! ATTATCAACACAATACAAAA+AGG + chr4_1:45001719-45001738 None:intergenic 20.0%
!! AAATGAATTTATATGGTCTT+TGG - chr4_1:45002316-45002335 Msa0549790:intron 20.0%
!! AATGAATTTATATGGTCTTT+GGG - chr4_1:45002317-45002336 Msa0549790:intron 20.0%
!!! ATATTCTGAAAATGAACTTT+TGG - chr4_1:45002465-45002484 Msa0549790:intron 20.0%
!!! TATTCTGAAAATGAACTTTT+GGG - chr4_1:45002466-45002485 Msa0549790:intron 20.0%
!! TAAAAAAGAGAGTAGTTATT+TGG - chr4_1:45002583-45002602 Msa0549790:intron 20.0%
!!! CTATGAAAAACTTCTAATTT+TGG + chr4_1:45003536-45003555 None:intergenic 20.0%
!! AACAATAAACAAGGTTAATT+GGG + chr4_1:45003708-45003727 None:intergenic 20.0%
!! AAACAATAAACAAGGTTAAT+TGG + chr4_1:45003709-45003728 None:intergenic 20.0%
!! TGTTGTTAAAACAATAAACA+AGG + chr4_1:45003717-45003736 None:intergenic 20.0%
!! ATGTTCAATGTTAAAAAGAT+AGG - chr4_1:45004076-45004095 Msa0549790:intron 20.0%
!!! CAGTAGTTATTTTTATAAGA+TGG - chr4_1:45004330-45004349 Msa0549790:intron 20.0%
!! TTTAACATTCTTAGGAAATT+TGG - chr4_1:45004872-45004891 Msa0549790:intron 20.0%
!! GTATATCAAACATTAAATGT+AGG + chr4_1:45005128-45005147 None:intergenic 20.0%
!! ACATTTAATGTTTGATATAC+AGG - chr4_1:45005128-45005147 Msa0549790:intron 20.0%
!!! GGGTTTATATTTTATATCAA+AGG + chr4_1:45005172-45005191 None:intergenic 20.0%
!!! AATAAAATTTTCTGAGTATC+TGG - chr4_1:45005330-45005349 Msa0549790:intron 20.0%
!! ATTGCATTACAATAAAATGA+TGG + chr4_1:45005795-45005814 None:intergenic 20.0%
!!! TGACCTTAAAACTTTTTTTA+TGG + chr4_1:45006192-45006211 None:intergenic 20.0%
!!! AAAAAAAGTTTTAAGGTCAA+TGG - chr4_1:45006193-45006212 Msa0549790:intron 20.0%
!!! CAAATTTTCTACATATATGT+TGG + chr4_1:45006657-45006676 None:intergenic 20.0%
!!! TGGTTTTTAAATAAGAAAAG+GGG + chr4_1:45006846-45006865 None:intergenic 20.0%
!! AAAATACCAATACATGTTAT+TGG - chr4_1:45007107-45007126 Msa0549790:intron 20.0%
!! TAAATACCAATAACATGTAT+TGG + chr4_1:45007116-45007135 None:intergenic 20.0%
!! ATACGTAAATATAAATGCAA+GGG + chr4_1:45007160-45007179 None:intergenic 20.0%
!! AATACGTAAATATAAATGCA+AGG + chr4_1:45007161-45007180 None:intergenic 20.0%
!!! TTTTTTGGGTTATAAAAAAC+CGG + chr4_1:45007277-45007296 None:intergenic 20.0%
!! ATGTTAAAATAGTATTGCAA+TGG - chr4_1:45007375-45007394 Msa0549790:intron 20.0%
!! TGTTAAAATAGTATTGCAAT+GGG - chr4_1:45007376-45007395 Msa0549790:intron 20.0%
!!! TTTAAGCTTAAAGGTATATA+GGG + chr4_1:45007514-45007533 None:intergenic 20.0%
!!! TTTTAAGCTTAAAGGTATAT+AGG + chr4_1:45007515-45007534 None:intergenic 20.0%
!!! TGAAAGTTTTTTAAGCTTAA+AGG + chr4_1:45007523-45007542 None:intergenic 20.0%
!! TAGGAAAATAGTTTAAATGA+AGG - chr4_1:45007659-45007678 Msa0549790:intron 20.0%
!! AGGAAAATAGTTTAAATGAA+GGG - chr4_1:45007660-45007679 Msa0549790:intron 20.0%
!!! AAATAATTTTAGCTTGTCTA+GGG + chr4_1:45007903-45007922 None:intergenic 20.0%
!!! AAAATAATTTTAGCTTGTCT+AGG + chr4_1:45007904-45007923 None:intergenic 20.0%
!! CAAGAAAACAAAACTTATTT+AGG + chr4_1:45007952-45007971 None:intergenic 20.0%
!!! TTTGGTTTTTTTTTTTTGCT+TGG - chr4_1:45007984-45008003 Msa0549790:CDS 20.0%
!! AACAAAATGATTTCTCATTA+AGG - chr4_1:45008398-45008417 Msa0549790:intron 20.0%
!!! ATTTCTCATTAAGGATTTTT+TGG - chr4_1:45008407-45008426 Msa0549790:intron 20.0%
!!! TTTCTCATTAAGGATTTTTT+GGG - chr4_1:45008408-45008427 Msa0549790:intron 20.0%
!!! ATTTGAGGATATTAGTTTTT+GGG + chr4_1:45008794-45008813 None:intergenic 20.0%
!!! AATTTGAGGATATTAGTTTT+TGG + chr4_1:45008795-45008814 None:intergenic 20.0%
!!! TGAGATTTTTCTTTAATTTG+AGG + chr4_1:45008809-45008828 None:intergenic 20.0%
!!! CTTTTGTTACTTTTAGTTTT+AGG + chr4_1:45008881-45008900 None:intergenic 20.0%
!! TAATATAGAATTGTTGTGTT+GGG - chr4_1:45008956-45008975 Msa0549790:intron 20.0%
!! AAATTGGAGATTACATATAA+TGG + chr4_1:45008995-45009014 None:intergenic 20.0%
!! TCACAAATTAGCAATATTTA+GGG + chr4_1:45009022-45009041 None:intergenic 20.0%
!! AACAAAAACAAAATGCATAT+TGG + chr4_1:45009163-45009182 None:intergenic 20.0%
!! AATAAATGAATTGGATAATC+AGG + chr4_1:45009396-45009415 None:intergenic 20.0%
!! AATAATTGGACAATATCATT+TGG - chr4_1:45009463-45009482 Msa0549790:intron 20.0%
!! TGAAAATAATTAATAGTGGT+GGG + chr4_1:45009539-45009558 None:intergenic 20.0%
!! TTGAAAATAATTAATAGTGG+TGG + chr4_1:45009540-45009559 None:intergenic 20.0%
!! ATTAATAACCCAAAAGTAAT+TGG + chr4_1:45009957-45009976 None:intergenic 20.0%
!! TTCGAAAAAAATGAAGAAAT+TGG - chr4_1:45009991-45010010 Msa0549790:CDS 20.0%
!! AAATGCATTGAATAATGAAA+GGG + chr4_1:45010083-45010102 None:intergenic 20.0%
!! AAAATGCATTGAATAATGAA+AGG + chr4_1:45010084-45010103 None:intergenic 20.0%
!!! TTTAATTTTATATGGGTAGT+CGG - chr4_1:45010245-45010264 Msa0549790:five_prime_UTR 20.0%
! AAAAAGAGAATATATAGGGA+AGG - chr4_1:44998130-44998149 Msa0549790:three_prime_UTR 25.0%
!! TTGTTTCTTCTTCTATTGAT+TGG - chr4_1:44998599-44998618 Msa0549790:CDS 25.0%
! TAGTCGATCTAAATCAAAAA+AGG + chr4_1:44998913-44998932 None:intergenic 25.0%
! GTAAAGAATAATAAGCTTAG+TGG - chr4_1:44998999-44999018 Msa0549790:intron 25.0%
!!! GTTGTGTAGAATTTTTAGTA+AGG - chr4_1:44999181-44999200 Msa0549790:intron 25.0%
! AGATCTAGAGATTAATGAAT+TGG - chr4_1:44999272-44999291 Msa0549790:intron 25.0%
!! AACTTTTCATTATCACTTGT+TGG - chr4_1:44999651-44999670 Msa0549790:intron 25.0%
!! ACTTTTCATTATCACTTGTT+GGG - chr4_1:44999652-44999671 Msa0549790:intron 25.0%
!! CACAACATTTGAAATGTTAT+TGG - chr4_1:44999699-44999718 Msa0549790:intron 25.0%
!! ACATGTTTACATACTTTTCA+AGG - chr4_1:44999803-44999822 Msa0549790:intron 25.0%
! TTAAAATGTCTGTCTAAAGA+TGG + chr4_1:44999847-44999866 None:intergenic 25.0%
!!! CTTTCCATATTTTTGCAAAA+CGG + chr4_1:45000458-45000477 None:intergenic 25.0%
!!! TTCTTTTTTAGTGTCCTTTT+AGG - chr4_1:45000560-45000579 Msa0549790:intron 25.0%
!!! TCTTTTTTAGTGTCCTTTTA+GGG - chr4_1:45000561-45000580 Msa0549790:intron 25.0%
! TCTGTCTTCATTAAGTTTAT+GGG - chr4_1:45000604-45000623 Msa0549790:intron 25.0%
!! AACAAACAAACTAGCTTATA+TGG + chr4_1:45000831-45000850 None:intergenic 25.0%
! GCGAAAAAAACTAAAACTAT+CGG + chr4_1:45001017-45001036 None:intergenic 25.0%
!!! TTGTCTTAACATTTTTCAGA+TGG - chr4_1:45001077-45001096 Msa0549790:intron 25.0%
!! TGTTTGGGATACAAAATTTA+TGG - chr4_1:45001133-45001152 Msa0549790:intron 25.0%
!!! ATTTTTCAGACTGAAAACTA+AGG + chr4_1:45001375-45001394 None:intergenic 25.0%
! AACAAAAACAGGAATACATA+TGG + chr4_1:45001468-45001487 None:intergenic 25.0%
! TGTTAATTTATGCTAGAAAG+AGG - chr4_1:45001571-45001590 Msa0549790:intron 25.0%
! GTTAATTTATGCTAGAAAGA+GGG - chr4_1:45001572-45001591 Msa0549790:intron 25.0%
! CAAATGTCAAGAGAAAAATA+AGG + chr4_1:45002062-45002081 None:intergenic 25.0%
! TATTAGAATGAGTGTAAAGA+AGG + chr4_1:45002098-45002117 None:intergenic 25.0%
!!! TCTTTTTTATTACATTGAGC+AGG + chr4_1:45002572-45002591 None:intergenic 25.0%
!! TTACGAGTGTTTTCAATTTT+AGG - chr4_1:45002819-45002838 Msa0549790:intron 25.0%
!! TACGAGTGTTTTCAATTTTA+GGG - chr4_1:45002820-45002839 Msa0549790:intron 25.0%
!! ATCATTCTTTTTCTACTTGA+TGG - chr4_1:45003347-45003366 Msa0549790:intron 25.0%
!! TCCATCACATTAATGTTTTA+AGG - chr4_1:45003470-45003489 Msa0549790:intron 25.0%
!!! CCATCACATTAATGTTTTAA+GGG - chr4_1:45003471-45003490 Msa0549790:intron 25.0%
! ATGACAAAATATAGCATGTT+AGG + chr4_1:45004010-45004029 None:intergenic 25.0%
! TTATAATATGAGCATCTGAT+TGG - chr4_1:45004052-45004071 Msa0549790:intron 25.0%
!! AGATTGTAGATTTTGTACTT+TGG - chr4_1:45004099-45004118 Msa0549790:intron 25.0%
! TTTGTACTTTGGTATTATTG+TGG - chr4_1:45004110-45004129 Msa0549790:intron 25.0%
! TTATTCTGATAGATCTTACT+TGG - chr4_1:45004216-45004235 Msa0549790:intron 25.0%
! TAAAGATGATATATTGACCT+AGG + chr4_1:45004359-45004378 None:intergenic 25.0%
! ACATAGTTATTCATTCTTCA+TGG - chr4_1:45004501-45004520 Msa0549790:intron 25.0%
!! TAATAAGGCATTATTGAACT+CGG + chr4_1:45004632-45004651 None:intergenic 25.0%
!!! AGATTTTTTTAGAAATACCC+AGG + chr4_1:45004839-45004858 None:intergenic 25.0%
! TATTTATCGTATGTGAAGTT+AGG + chr4_1:45005081-45005100 None:intergenic 25.0%
! TGTTTGATATTATTAGTGAC+AGG - chr4_1:45005207-45005226 Msa0549790:CDS 25.0%
!!! ATCTTTCAGTGTTTTAACAA+TGG + chr4_1:45005425-45005444 None:intergenic 25.0%
! ATGCAGTAATTGATATTACA+AGG - chr4_1:45005696-45005715 Msa0549790:intron 25.0%
! AGTAATTGATATTACAAGGA+TGG - chr4_1:45005700-45005719 Msa0549790:intron 25.0%
!! AAGCATTTTGAATCTGAAAA+AGG - chr4_1:45005758-45005777 Msa0549790:intron 25.0%
! TAGTATTGTTGTAGAAAAGA+TGG - chr4_1:45006035-45006054 Msa0549790:intron 25.0%
! ATTAAAATGTCTGCATGTAA+CGG + chr4_1:45006372-45006391 None:intergenic 25.0%
!! ACCATCTTTTAATCTCTTTT+GGG + chr4_1:45007318-45007337 None:intergenic 25.0%
!! AACCATCTTTTAATCTCTTT+TGG + chr4_1:45007319-45007338 None:intergenic 25.0%
!! TAACATTCCTTTTCTCATAA+GGG + chr4_1:45007361-45007380 None:intergenic 25.0%
!! TTAACATTCCTTTTCTCATA+AGG + chr4_1:45007362-45007381 None:intergenic 25.0%
! AACTACTGATAAGGATATTA+TGG - chr4_1:45007570-45007589 Msa0549790:intron 25.0%
! ACTACTGATAAGGATATTAT+GGG - chr4_1:45007571-45007590 Msa0549790:intron 25.0%
! GTTTAAATGAAGGGTAAAAT+TGG - chr4_1:45007669-45007688 Msa0549790:intron 25.0%
! AAATATGAAGGGTTTATGAA+AGG + chr4_1:45007835-45007854 None:intergenic 25.0%
!! TTCATAAACCCTTCATATTT+TGG - chr4_1:45007835-45007854 Msa0549790:intron 25.0%
!!! AAGTTTTGTTTTCTTGAATG+TGG - chr4_1:45007956-45007975 Msa0549790:intron 25.0%
!!! AGTTTTGTTTTCTTGAATGT+GGG - chr4_1:45007957-45007976 Msa0549790:intron 25.0%
! ATTAAGTATAGACAGTAAAG+CGG - chr4_1:45008041-45008060 Msa0549790:CDS 25.0%
!!! ATTAAGGATTTTTTGGGTAT+CGG - chr4_1:45008414-45008433 Msa0549790:intron 25.0%
!!! TACAGGTTTTGTTCTATATT+TGG + chr4_1:45008598-45008617 None:intergenic 25.0%
! TAATTAAGCTAGCTATCAAA+GGG - chr4_1:45008682-45008701 Msa0549790:intron 25.0%
! ATGCTCATTGAATACTTAAA+TGG + chr4_1:45008720-45008739 None:intergenic 25.0%
!!! TTAGTTTTCTTAACAAGTGT+GGG + chr4_1:45008939-45008958 None:intergenic 25.0%
!!! ATTAGTTTTCTTAACAAGTG+TGG + chr4_1:45008940-45008959 None:intergenic 25.0%
! CTAATATAGAATTGTTGTGT+TGG - chr4_1:45008955-45008974 Msa0549790:intron 25.0%
! CAATATTTAGGGGTTAAAAT+TGG + chr4_1:45009011-45009030 None:intergenic 25.0%
! CACAAATTAGCAATATTTAG+GGG + chr4_1:45009021-45009040 None:intergenic 25.0%
! GTCACAAATTAGCAATATTT+AGG + chr4_1:45009023-45009042 None:intergenic 25.0%
! TAGAACGGTAATAAATGAAT+TGG + chr4_1:45009405-45009424 None:intergenic 25.0%
!!! ATTATTTTAAGCAAATGGAG+AGG + chr4_1:45009449-45009468 None:intergenic 25.0%
! CTCCATTTGCTTAAAATAAT+TGG - chr4_1:45009449-45009468 Msa0549790:intron 25.0%
!!! GTCCAATTATTTTAAGCAAA+TGG + chr4_1:45009454-45009473 None:intergenic 25.0%
!! AGATACATAAAAGTATGTAG+TGG - chr4_1:45009494-45009513 Msa0549790:intron 25.0%
!! GATACATAAAAGTATGTAGT+GGG - chr4_1:45009495-45009514 Msa0549790:intron 25.0%
!!! ATCTTGTGACATTTTTTGTT+TGG - chr4_1:45010277-45010296 Msa0549790:five_prime_UTR 25.0%
! TTCTTCTTCTATTGATTGGT+AGG - chr4_1:44998603-44998622 Msa0549790:CDS 30.0%
! TCTTCTTCTATTGATTGGTA+GGG - chr4_1:44998604-44998623 Msa0549790:CDS 30.0%
ATCAAACATCGACAATTGTT+TGG - chr4_1:44998696-44998715 Msa0549790:intron 30.0%
!! ATTGTTTGGTCTTAGTAGTA+AGG - chr4_1:44998710-44998729 Msa0549790:intron 30.0%
!! TTGTTTGGTCTTAGTAGTAA+GGG - chr4_1:44998711-44998730 Msa0549790:intron 30.0%
AACTTGGTTCAATTTCGTTT+CGG - chr4_1:44998791-44998810 Msa0549790:intron 30.0%
CAATTTCCACTTTCGTATAA+TGG + chr4_1:44998869-44998888 None:intergenic 30.0%
TATACGAAAGTGGAAATTGT+TGG - chr4_1:44998870-44998889 Msa0549790:intron 30.0%
ATACGAAAGTGGAAATTGTT+GGG - chr4_1:44998871-44998890 Msa0549790:intron 30.0%
CGATCTAAATCAAAAAAGGT+TGG + chr4_1:44998909-44998928 None:intergenic 30.0%
AGTATCTATCGTAGATAAGA+TGG - chr4_1:44999118-44999137 Msa0549790:intron 30.0%
!! AGATAAGATGGTGGAAAATT+TGG - chr4_1:44999130-44999149 Msa0549790:intron 30.0%
! AAAATTTGGCTTAAGTGGTT+TGG - chr4_1:44999144-44999163 Msa0549790:intron 30.0%
! AAATTTGGCTTAAGTGGTTT+GGG - chr4_1:44999145-44999164 Msa0549790:intron 30.0%
ATGATACACTTCTGAATGTT+AGG - chr4_1:44999431-44999450 Msa0549790:intron 30.0%
AAGTACTACACAAGAAATTC+AGG + chr4_1:44999510-44999529 None:intergenic 30.0%
ATTTCTTGTGTAGTACTTTG+AGG - chr4_1:44999512-44999531 Msa0549790:intron 30.0%
! AGCTTTATAACTGCTTGAAT+CGG + chr4_1:44999586-44999605 None:intergenic 30.0%
! TTCTCTCATATTTCTATGAG+TGG - chr4_1:44999924-44999943 Msa0549790:intron 30.0%
! TTTCCTTGTGAACATGATTT+TGG - chr4_1:45000026-45000045 Msa0549790:intron 30.0%
! TTATATTCTTTTATGCTGCC+AGG - chr4_1:45000057-45000076 Msa0549790:intron 30.0%
! TATATTCTTTTATGCTGCCA+GGG - chr4_1:45000058-45000077 Msa0549790:intron 30.0%
CTGAATAAACAATTGCAGTA+TGG + chr4_1:45000392-45000411 None:intergenic 30.0%
! AAGACCGTTTTGCAAAAATA+TGG - chr4_1:45000451-45000470 Msa0549790:intron 30.0%
! CGTTTTGCAAAAATATGGAA+AGG - chr4_1:45000456-45000475 Msa0549790:intron 30.0%
TAATTCTTAAGCTCCCTAAA+AGG + chr4_1:45000577-45000596 None:intergenic 30.0%
GTCTGTCTTCATTAAGTTTA+TGG - chr4_1:45000603-45000622 Msa0549790:intron 30.0%
CTGTCTTCATTAAGTTTATG+GGG - chr4_1:45000605-45000624 Msa0549790:intron 30.0%
TGTCTTCATTAAGTTTATGG+GGG - chr4_1:45000606-45000625 Msa0549790:intron 30.0%
GCTTGATATTCTATTCTCTT+TGG - chr4_1:45000696-45000715 Msa0549790:intron 30.0%
AAATGTTAATCCTGAAGCTA+CGG + chr4_1:45000749-45000768 None:intergenic 30.0%
! TAGCTTCAGGATTAACATTT+TGG - chr4_1:45000749-45000768 Msa0549790:intron 30.0%
GTTGCAATAACAGTAGATAT+TGG + chr4_1:45000781-45000800 None:intergenic 30.0%
ATCGGCAATGCTAAATAAAA+CGG + chr4_1:45000999-45001018 None:intergenic 30.0%
TTTCTCAATACAAGTCTAGT+AGG - chr4_1:45001264-45001283 Msa0549790:intron 30.0%
TAAGAAATTCACAGTATGGA+CGG + chr4_1:45001351-45001370 None:intergenic 30.0%
AGGTTAAGAAATTCACAGTA+TGG + chr4_1:45001355-45001374 None:intergenic 30.0%
! AGTTTTCAGTCTGAAAAATG+TGG - chr4_1:45001376-45001395 Msa0549790:intron 30.0%
AAAGAGTTCAAATCAAACCT+GGG + chr4_1:45001647-45001666 None:intergenic 30.0%
AAAAGAGTTCAAATCAAACC+TGG + chr4_1:45001648-45001667 None:intergenic 30.0%
AACAGAATTACAGAGGTTAA+GGG + chr4_1:45001875-45001894 None:intergenic 30.0%
AATGTTGAGATTGACTATCT+TGG - chr4_1:45002243-45002262 Msa0549790:intron 30.0%
ATGTTGAGATTGACTATCTT+GGG - chr4_1:45002244-45002263 Msa0549790:intron 30.0%
! ATTGCAGAGAGAAATTTGTT+AGG - chr4_1:45002706-45002725 Msa0549790:CDS 30.0%
TTGAAAACACTCGTAAGAAA+AGG + chr4_1:45002815-45002834 None:intergenic 30.0%
!!! TGTTTTCAATTTTAGGGCTT+AGG - chr4_1:45002826-45002845 Msa0549790:intron 30.0%
AGTAACTGATCAGACTAAAT+GGG + chr4_1:45002895-45002914 None:intergenic 30.0%
AAGTAACTGATCAGACTAAA+TGG + chr4_1:45002896-45002915 None:intergenic 30.0%
CAGTTCATACTTCAAAATAC+TGG - chr4_1:45003192-45003211 Msa0549790:intron 30.0%
TATAACATTGTACTTACAGC+CGG + chr4_1:45003262-45003281 None:intergenic 30.0%
AATTCATGCAGGACAAAATA+AGG + chr4_1:45003451-45003470 None:intergenic 30.0%
CCCTTAAAACATTAATGTGA+TGG + chr4_1:45003474-45003493 None:intergenic 30.0%
TTAGGAATATGCTTGAAAGT+AGG + chr4_1:45003755-45003774 None:intergenic 30.0%
TACTTTCAAGCATATTCCTA+AGG - chr4_1:45003754-45003773 Msa0549790:intron 30.0%
!! TGCTTTCATACACTTTGTTT+TGG - chr4_1:45003779-45003798 Msa0549790:intron 30.0%
!!! TCAGATCATCCACATTTTTT+AGG + chr4_1:45003857-45003876 None:intergenic 30.0%
AAGCGTATAACTACAGTAAA+AGG + chr4_1:45003884-45003903 None:intergenic 30.0%
AATATAGCATGTTAGGACTA+AGG + chr4_1:45004003-45004022 None:intergenic 30.0%
GTCTATGTATTCTTGTGTAT+TGG - chr4_1:45004132-45004151 Msa0549790:intron 30.0%
TATGTATTCTTGTGTATTGG+AGG - chr4_1:45004135-45004154 Msa0549790:intron 30.0%
AGAAAACAAATTTGCAGCAA+AGG + chr4_1:45004247-45004266 None:intergenic 30.0%
!! TGCAAATTTGTTTTCTCTTC+AGG - chr4_1:45004251-45004270 Msa0549790:intron 30.0%
! TTTTTATAAGATGGTCACCT+AGG - chr4_1:45004339-45004358 Msa0549790:intron 30.0%
GACAATGGAAGTAAAAAACT+GGG + chr4_1:45004552-45004571 None:intergenic 30.0%
TGACAATGGAAGTAAAAAAC+TGG + chr4_1:45004553-45004572 None:intergenic 30.0%
! TTTTACTTCCATTGTCAGAA+AGG - chr4_1:45004556-45004575 Msa0549790:intron 30.0%
TTTACTTCCATTGTCAGAAA+GGG - chr4_1:45004557-45004576 Msa0549790:intron 30.0%
TTTGATACTGCTCAATTTGA+TGG - chr4_1:45004589-45004608 Msa0549790:intron 30.0%
TTGATACTGCTCAATTTGAT+GGG - chr4_1:45004590-45004609 Msa0549790:intron 30.0%
!!! TGAACTCGGCAATTTTTTTA+AGG + chr4_1:45004618-45004637 None:intergenic 30.0%
!! CTTTTGGTAGTAGAAACTTA+GGG - chr4_1:45004739-45004758 Msa0549790:intron 30.0%
!! TTTTGGTAGTAGAAACTTAG+GGG - chr4_1:45004740-45004759 Msa0549790:intron 30.0%
TGGACTCAAAAATTATTCCT+AGG - chr4_1:45004775-45004794 Msa0549790:intron 30.0%
AATGAGTATACCCATGTTAA+GGG + chr4_1:45004955-45004974 None:intergenic 30.0%
AGGTTATGAATTACATTCCT+GGG + chr4_1:45004993-45005012 None:intergenic 30.0%
AAGGTTATGAATTACATTCC+TGG + chr4_1:45004994-45005013 None:intergenic 30.0%
TTCACCATCGTAAAATTAAG+GGG + chr4_1:45005028-45005047 None:intergenic 30.0%
GTTCACCATCGTAAAATTAA+GGG + chr4_1:45005029-45005048 None:intergenic 30.0%
AGTTCACCATCGTAAAATTA+AGG + chr4_1:45005030-45005049 None:intergenic 30.0%
ATCAATAGGTACATTGGATT+AGG + chr4_1:45005055-45005074 None:intergenic 30.0%
AAACACAATTCACTTGACTA+GGG + chr4_1:45005192-45005211 None:intergenic 30.0%
TTCAGATTCTGCAAATTTAC+TGG + chr4_1:45005464-45005483 None:intergenic 30.0%
TACTGAATATGCTATCTTCA+TGG - chr4_1:45005494-45005513 Msa0549790:intron 30.0%
TTCAGAAATTTCAACTAACC+AGG + chr4_1:45005538-45005557 None:intergenic 30.0%
TGTTATCTCTGTAAAACCAT+TGG - chr4_1:45005578-45005597 Msa0549790:intron 30.0%
AATGATATCAAACAATGCAC+AGG + chr4_1:45005892-45005911 None:intergenic 30.0%
TGTGCATTGTTTGATATCAT+TGG - chr4_1:45005891-45005910 Msa0549790:intron 30.0%
!!! TACTCTCGTGTTGATTTTTA+TGG + chr4_1:45005943-45005962 None:intergenic 30.0%
! TAAATCAATGTAGTGGAGAT+CGG - chr4_1:45005961-45005980 Msa0549790:intron 30.0%
AAGGAGAGAAAATTAGATGA+AGG - chr4_1:45006115-45006134 Msa0549790:intron 30.0%
AGAAAATTAGATGAAGGTCA+GGG - chr4_1:45006121-45006140 Msa0549790:intron 30.0%
!!! AAGTTTTAAGGTCAATGGTT+TGG - chr4_1:45006198-45006217 Msa0549790:intron 30.0%
TTAAAATGTCTGCATGTAAC+GGG + chr4_1:45006371-45006390 None:intergenic 30.0%
! GTTACATGCAGACATTTTAA+TGG - chr4_1:45006371-45006390 Msa0549790:intron 30.0%
GCATGAATTCTTAAAGAGAT+TGG + chr4_1:45006466-45006485 None:intergenic 30.0%
TTCACATGATTCTTCAGAAA+TGG + chr4_1:45006866-45006885 None:intergenic 30.0%
! TGAATTTGTCCATCTTTTTG+TGG - chr4_1:45006887-45006906 Msa0549790:intron 30.0%
CAGAATTAACCACAAAAAGA+TGG + chr4_1:45006899-45006918 None:intergenic 30.0%
! CATCTTTTTGTGGTTAATTC+TGG - chr4_1:45006897-45006916 Msa0549790:intron 30.0%
TATAAAAAACCGGAAAACAC+AGG + chr4_1:45007267-45007286 None:intergenic 30.0%
AAATAGTATTGCAATGGGTA+TGG - chr4_1:45007381-45007400 Msa0549790:intron 30.0%
AATAGTATTGCAATGGGTAT+GGG - chr4_1:45007382-45007401 Msa0549790:intron 30.0%
ATAATTGAAGAACCCTTGAT+GGG - chr4_1:45007542-45007561 Msa0549790:intron 30.0%
AATGAAGGGTAAAATTGGAA+AGG - chr4_1:45007674-45007693 Msa0549790:intron 30.0%
! TAATAGGGTGTCTAAGTAAT+AGG + chr4_1:45007768-45007787 None:intergenic 30.0%
!!! ACTACTGATAAGGGTATTTT+GGG + chr4_1:45007866-45007885 None:intergenic 30.0%
!!! AACTACTGATAAGGGTATTT+TGG + chr4_1:45007867-45007886 None:intergenic 30.0%
! AGTGCTATTGATTGAATCTA+AGG - chr4_1:45008208-45008227 Msa0549790:intron 30.0%
ATTGAATCTAAGGATCAAGA+AGG - chr4_1:45008218-45008237 Msa0549790:intron 30.0%
!!! TGTCTTACACTATTTTTACC+TGG - chr4_1:45008275-45008294 Msa0549790:intron 30.0%
!!! GTCTTACACTATTTTTACCT+GGG - chr4_1:45008276-45008295 Msa0549790:intron 30.0%
!! TTACCAAGTGTTCTAAGTTT+TGG + chr4_1:45008318-45008337 None:intergenic 30.0%
! GAGTTTCATTTTATCTCAAG+AGG + chr4_1:45008466-45008485 None:intergenic 30.0%
GAAACTCTTAATGTTGCATT+TGG - chr4_1:45008479-45008498 Msa0549790:intron 30.0%
AGCAAAACATGACAAAAGTA+GGG + chr4_1:45008559-45008578 None:intergenic 30.0%
! TGATAGCTAGCTTAATTAGA+GGG + chr4_1:45008680-45008699 None:intergenic 30.0%
! TTGATAGCTAGCTTAATTAG+AGG + chr4_1:45008681-45008700 None:intergenic 30.0%
CTAATTAAGCTAGCTATCAA+AGG - chr4_1:45008681-45008700 Msa0549790:intron 30.0%
AATTAAGCTAGCTATCAAAG+GGG - chr4_1:45008683-45008702 Msa0549790:intron 30.0%
!!! GGATATTAGTTTTTGGGATT+GGG + chr4_1:45008788-45008807 None:intergenic 30.0%
!!! AGGATATTAGTTTTTGGGAT+TGG + chr4_1:45008789-45008808 None:intergenic 30.0%
TCTTCAATTTGAGGACTATT+AGG + chr4_1:45008833-45008852 None:intergenic 30.0%
AGTCCTCAAATTGAAGAAAA+AGG - chr4_1:45008836-45008855 Msa0549790:CDS 30.0%
! TGTCCTTTTTCTTCAATTTG+AGG + chr4_1:45008842-45008861 None:intergenic 30.0%
! TAGTTTTCTTAACAAGTGTG+GGG + chr4_1:45008938-45008957 None:intergenic 30.0%
!!! TGTATCTCATCGACTTTTTT+GGG - chr4_1:45009267-45009286 Msa0549790:intron 30.0%
AAATGGAAGAGACTAATAGA+TGG - chr4_1:45009593-45009612 Msa0549790:intron 30.0%
GGATTTGACAATGAAAAGTT+TGG + chr4_1:45009786-45009805 None:intergenic 30.0%
TCTTGTGAAAAAAATAGCAC+TGG - chr4_1:45009828-45009847 Msa0549790:intron 30.0%
! AAGCTGAATCCAATTACTTT+TGG - chr4_1:45009945-45009964 Msa0549790:CDS 30.0%
!! AGCTGAATCCAATTACTTTT+GGG - chr4_1:45009946-45009965 Msa0549790:CDS 30.0%
AATGCAGAGTTAATTGGAAT+TGG - chr4_1:45010138-45010157 Msa0549790:CDS 30.0%
GTTAAATAGATTGTCAGAGA+TGG + chr4_1:45010318-45010337 None:intergenic 30.0%
AAGAGAATATATAGGGAAGG+AGG - chr4_1:44998133-44998152 Msa0549790:three_prime_UTR 35.0%
TTGAAGAAGCAAAGGACTTT+GGG - chr4_1:44998156-44998175 Msa0549790:three_prime_UTR 35.0%
TCTTAAAGGTCATCAATTGC+AGG - chr4_1:44998546-44998565 Msa0549790:CDS 35.0%
TAGTCACCATTATACGAAAG+TGG - chr4_1:44998860-44998879 Msa0549790:intron 35.0%
TAATAAGCTTAGTGGAGATG+TGG - chr4_1:44999007-44999026 Msa0549790:intron 35.0%
ATCTATCGTAGATAAGATGG+TGG - chr4_1:44999121-44999140 Msa0549790:intron 35.0%
! ACTACTTTAAAGACCTGGAA+GGG - chr4_1:44999776-44999795 Msa0549790:intron 35.0%
CCTTTATGTCCTAAAATCGA+AGG + chr4_1:44999992-45000011 None:intergenic 35.0%
!!! CCTTCGATTTTAGGACATAA+AGG - chr4_1:44999989-45000008 Msa0549790:intron 35.0%
GAGAGTTAAGACACTAAAAC+AGG + chr4_1:45000100-45000119 None:intergenic 35.0%
AGTATCTGTACATTCCTCAA+AGG + chr4_1:45000156-45000175 None:intergenic 35.0%
! ATATTTTCTGATGCAGAGCA+AGG + chr4_1:45000284-45000303 None:intergenic 35.0%
!! ACTACAGTTCTCTGAGATTA+TGG - chr4_1:45000331-45000350 Msa0549790:intron 35.0%
!! CTACAGTTCTCTGAGATTAT+GGG - chr4_1:45000332-45000351 Msa0549790:intron 35.0%
! AGTAAGTGGTGAAGTGTTAA+TGG - chr4_1:45000356-45000375 Msa0549790:intron 35.0%
CTCAATACTGTTGAGTTTCA+TGG - chr4_1:45000531-45000550 Msa0549790:intron 35.0%
GGGAGCTTAAGAATTAATCT+TGG - chr4_1:45000581-45000600 Msa0549790:intron 35.0%
!!! TATGGGGGAATTTTTTGTTG+TGG - chr4_1:45000621-45000640 Msa0549790:intron 35.0%
!!! ATGGGGGAATTTTTTGTTGT+GGG - chr4_1:45000622-45000641 Msa0549790:intron 35.0%
!!! AATTTTTTGTTGTGGGGGTA+GGG - chr4_1:45000629-45000648 Msa0549790:intron 35.0%
AAGCAGATTCTTACAACTGT+TGG + chr4_1:45000680-45000699 None:intergenic 35.0%
GGCAATTTGATCAGTGATAA+TGG + chr4_1:45000927-45000946 None:intergenic 35.0%
! TGTATAAATCAAGCTCTAGC+TGG + chr4_1:45001235-45001254 None:intergenic 35.0%
!!! TAGTAGGTACGCTTTTTTGT+GGG - chr4_1:45001280-45001299 Msa0549790:intron 35.0%
ATAAGAGAAGCTGATGAAAC+GGG + chr4_1:45001328-45001347 None:intergenic 35.0%
GATAAGAGAAGCTGATGAAA+CGG + chr4_1:45001329-45001348 None:intergenic 35.0%
ATTTATGCTAGAAAGAGGGT+TGG - chr4_1:45001576-45001595 Msa0549790:intron 35.0%
ACTAGTGATATCTGATGATC+TGG - chr4_1:45001678-45001697 Msa0549790:intron 35.0%
CAAACAAAAGTTGTCAGAGA+GGG - chr4_1:45001791-45001810 Msa0549790:intron 35.0%
GAACAGAATTACAGAGGTTA+AGG + chr4_1:45001876-45001895 None:intergenic 35.0%
CAACAACTTCACCAATCTTT+AGG + chr4_1:45001977-45001996 None:intergenic 35.0%
AAGATTGGTGAAGTTGTTGA+TGG - chr4_1:45001978-45001997 Msa0549790:CDS 35.0%
GATGGTGTTCAGTATGATTA+TGG - chr4_1:45002029-45002048 Msa0549790:CDS 35.0%
TCAGTGTTTGATGTGGATAT+TGG - chr4_1:45002136-45002155 Msa0549790:intron 35.0%
TTTGATGTGGATATTGGAGA+TGG - chr4_1:45002142-45002161 Msa0549790:intron 35.0%
! GGGTAAATTTTGTACCTGAT+CGG + chr4_1:45002195-45002214 None:intergenic 35.0%
AATTAAAGTTGCAACCTCGT+GGG + chr4_1:45002215-45002234 None:intergenic 35.0%
! CATTCACTGTTCTAAGTTCT+TGG + chr4_1:45002412-45002431 None:intergenic 35.0%
!!! GTTAGGCTGTTTTTATTTCC+AGG - chr4_1:45002512-45002531 Msa0549790:intron 35.0%
GCTCTATCTGTGAATAAAAC+TGG - chr4_1:45002605-45002624 Msa0549790:intron 35.0%
ATCTGTGAATAAAACTGGTG+CGG - chr4_1:45002610-45002629 Msa0549790:intron 35.0%
! TCTTGCTCAATTTCTGCTTT+TGG - chr4_1:45002916-45002935 Msa0549790:intron 35.0%
TTCATAGGGTTACGTAATGA+GGG + chr4_1:45002999-45003018 None:intergenic 35.0%
ATTCATAGGGTTACGTAATG+AGG + chr4_1:45003000-45003019 None:intergenic 35.0%
! TGTAGTTTGTATGCTCCAAA+AGG - chr4_1:45003036-45003055 Msa0549790:CDS 35.0%
TTAGCAGATTATCAGTCACA+TGG + chr4_1:45003067-45003086 None:intergenic 35.0%
CATATGATGCTGCTGATAAA+TGG - chr4_1:45003124-45003143 Msa0549790:intron 35.0%
! TAATGTGATGGAATTCATGC+AGG + chr4_1:45003462-45003481 None:intergenic 35.0%
!! TTCCTTAACTTGTACCCTAA+GGG + chr4_1:45003512-45003531 None:intergenic 35.0%
!! ATTCCTTAACTTGTACCCTA+AGG + chr4_1:45003513-45003532 None:intergenic 35.0%
CACAAGCACGTATTAAAACA+TGG + chr4_1:45003676-45003695 None:intergenic 35.0%
TGGAAATTGCTGATATAGTC+TGG - chr4_1:45003799-45003818 Msa0549790:CDS 35.0%
AAATTGCTGATATAGTCTGG+AGG - chr4_1:45003802-45003821 Msa0549790:CDS 35.0%
AATTGCTGATATAGTCTGGA+GGG - chr4_1:45003803-45003822 Msa0549790:CDS 35.0%
!!! GAGGGATAATTTTTAGCTCT+AGG - chr4_1:45003821-45003840 Msa0549790:CDS 35.0%
!!! TTTTAGCTCTAGGAGTTCTA+AGG - chr4_1:45003831-45003850 Msa0549790:CDS 35.0%
!! GTTCTAAGGCCTAAAAAATG+TGG - chr4_1:45003845-45003864 Msa0549790:CDS 35.0%
! ATATTTTGTCATGACTCACG+AGG - chr4_1:45004018-45004037 Msa0549790:intron 35.0%
! TATTTTGTCATGACTCACGA+GGG - chr4_1:45004019-45004038 Msa0549790:intron 35.0%
ATTCTTGTGTATTGGAGGTA+AGG - chr4_1:45004140-45004159 Msa0549790:intron 35.0%
CACTAATCAATTCCACAAGT+TGG + chr4_1:45004414-45004433 None:intergenic 35.0%
! AACTATGTAGCTCTGCAATA+AGG + chr4_1:45004489-45004508 None:intergenic 35.0%
! AATGTTAAAAGGGCTCCTTT+TGG - chr4_1:45004723-45004742 Msa0549790:intron 35.0%
CCTAAGTTTCTACTACCAAA+AGG + chr4_1:45004741-45004760 None:intergenic 35.0%
!! CCTTTTGGTAGTAGAAACTT+AGG - chr4_1:45004738-45004757 Msa0549790:intron 35.0%
! TTTGGTAGTAGAAACTTAGG+GGG - chr4_1:45004741-45004760 Msa0549790:intron 35.0%
CATACCGTGGAATATAAAGT+CGG - chr4_1:45004803-45004822 Msa0549790:intron 35.0%
ATACCGTGGAATATAAAGTC+GGG - chr4_1:45004804-45004823 Msa0549790:intron 35.0%
GCACACTCTTTAACATTCTT+AGG - chr4_1:45004864-45004883 Msa0549790:intron 35.0%
CAATGAGTATACCCATGTTA+AGG + chr4_1:45004956-45004975 None:intergenic 35.0%
TTACATTCCTGGGAATACAT+GGG + chr4_1:45004983-45005002 None:intergenic 35.0%
ATTACATTCCTGGGAATACA+TGG + chr4_1:45004984-45005003 None:intergenic 35.0%
TCACCATCGTAAAATTAAGG+GGG + chr4_1:45005027-45005046 None:intergenic 35.0%
AGGATGATCAATAGGTACAT+TGG + chr4_1:45005061-45005080 None:intergenic 35.0%
GTGAAGTTAGGATGATCAAT+AGG + chr4_1:45005069-45005088 None:intergenic 35.0%
! ATGCCTTTTGATGTTAGACA+CGG - chr4_1:45005100-45005119 Msa0549790:intron 35.0%
CAAACACAATTCACTTGACT+AGG + chr4_1:45005193-45005212 None:intergenic 35.0%
! GTGCTATTGTCAATCTCATA+GGG - chr4_1:45005352-45005371 Msa0549790:intron 35.0%
AGATAGCATATTCAGTAGCA+AGG + chr4_1:45005491-45005510 None:intergenic 35.0%
CTAACCAGGAAATATCATTG+TGG + chr4_1:45005524-45005543 None:intergenic 35.0%
!! AAGTGTACTGATTAAGAAGC+AGG + chr4_1:45005626-45005645 None:intergenic 35.0%
TCTTAATCAGTACACTTCTC+TGG - chr4_1:45005629-45005648 Msa0549790:intron 35.0%
!! TTCTCTGGTCTTAAGGAAAA+TGG - chr4_1:45005644-45005663 Msa0549790:intron 35.0%
TGTTGTATGAGATGAAGTGT+TGG - chr4_1:45005917-45005936 Msa0549790:intron 35.0%
ACGAGAGTAAATCAATGTAG+TGG - chr4_1:45005954-45005973 Msa0549790:intron 35.0%
ATTCTAGACGAGTTACAGTT+AGG - chr4_1:45006007-45006026 Msa0549790:intron 35.0%
AGATGGTTGCATCTAAACTT+CGG - chr4_1:45006052-45006071 Msa0549790:intron 35.0%
GAGAAAATTAGATGAAGGTC+AGG - chr4_1:45006120-45006139 Msa0549790:intron 35.0%
GTTTCTCCTACATCTTTACT+TGG + chr4_1:45006170-45006189 None:intergenic 35.0%
TTTCTTGTACTTTGCTGATG+AGG - chr4_1:45006324-45006343 Msa0549790:intron 35.0%
ATACTAGTCAACAGATTTGC+AGG + chr4_1:45006432-45006451 None:intergenic 35.0%
AGAATTCATGCTTCTACAAC+TGG - chr4_1:45006475-45006494 Msa0549790:intron 35.0%
! AATAGAGCTTTTCATTGCTC+TGG - chr4_1:45006730-45006749 Msa0549790:intron 35.0%
! CTTTTTGTGGTTAATTCTGG+TGG - chr4_1:45006900-45006919 Msa0549790:intron 35.0%
CTTGAGTATCAATGTAGAGT+AGG + chr4_1:45007021-45007040 None:intergenic 35.0%
AAACAAAGTTGCTTCAACCT+AGG + chr4_1:45007084-45007103 None:intergenic 35.0%
!! AGGTTGAAGCAACTTTGTTT+TGG - chr4_1:45007084-45007103 Msa0549790:intron 35.0%
GCCCAAAAGAGATTAAAAGA+TGG - chr4_1:45007314-45007333 Msa0549790:CDS 35.0%
CATAATTGAAGAACCCTTGA+TGG - chr4_1:45007541-45007560 Msa0549790:intron 35.0%
ATATTATGGGAATCCCCATA+TGG - chr4_1:45007584-45007603 Msa0549790:intron 35.0%
TTTCATAAACCGTCCATATG+GGG + chr4_1:45007600-45007619 None:intergenic 35.0%
CTTTCATAAACCGTCCATAT+GGG + chr4_1:45007601-45007620 None:intergenic 35.0%
GGCTAAATTTACTAGTGAGT+AGG - chr4_1:45007640-45007659 Msa0549790:intron 35.0%
AAGGAAAAATCCAGCTCAAA+AGG - chr4_1:45007693-45007712 Msa0549790:intron 35.0%
AGGAAAAATCCAGCTCAAAA+GGG - chr4_1:45007694-45007713 Msa0549790:intron 35.0%
GGGCAAAACCAAAATATGAA+GGG + chr4_1:45007846-45007865 None:intergenic 35.0%
TGGGCAAAACCAAAATATGA+AGG + chr4_1:45007847-45007866 None:intergenic 35.0%
AAACTTATTTAGGCCCAGTT+TGG + chr4_1:45007942-45007961 None:intergenic 35.0%
TGTCTATACTTAATGCAGAC+GGG + chr4_1:45008035-45008054 None:intergenic 35.0%
CTGTCTATACTTAATGCAGA+CGG + chr4_1:45008036-45008055 None:intergenic 35.0%
GTTATTGCATGCTTACATTG+TGG + chr4_1:45008158-45008177 None:intergenic 35.0%
TCACCAAAACTTAGAACACT+TGG - chr4_1:45008312-45008331 Msa0549790:intron 35.0%
CAGCAAAACATGACAAAAGT+AGG + chr4_1:45008560-45008579 None:intergenic 35.0%
ATTAAGCTAGCTATCAAAGG+GGG - chr4_1:45008684-45008703 Msa0549790:intron 35.0%
!!! ATTAGTTTTTGGGATTGGGT+GGG + chr4_1:45008784-45008803 None:intergenic 35.0%
!!! TATTAGTTTTTGGGATTGGG+TGG + chr4_1:45008785-45008804 None:intergenic 35.0%
!! GGAGCTTTAGTTTGGAATAA+TGG + chr4_1:45009056-45009075 None:intergenic 35.0%
!! TGTTTTTGTTCAGATTGTCG+AGG - chr4_1:45009173-45009192 Msa0549790:intron 35.0%
! AAAGCACGAAATTTGGAATC+AGG + chr4_1:45009213-45009232 None:intergenic 35.0%
AGCAACTAAAGCACGAAATT+TGG + chr4_1:45009220-45009239 None:intergenic 35.0%
!!! CTGTATCTCATCGACTTTTT+TGG - chr4_1:45009266-45009285 Msa0549790:intron 35.0%
! AGTTTTTCTGTAAGTCAAGC+TGG - chr4_1:45009307-45009326 Msa0549790:intron 35.0%
TGTGTCTTTATCTCTCCAAA+TGG - chr4_1:45009567-45009586 Msa0549790:intron 35.0%
ATCTCTCCAAATGGAAGAAA+TGG - chr4_1:45009576-45009595 Msa0549790:intron 35.0%
TCTCTTCCATTTCTTCCATT+TGG + chr4_1:45009585-45009604 None:intergenic 35.0%
ACCTATTAGCAAAAACTGCT+GGG - chr4_1:45009638-45009657 Msa0549790:intron 35.0%
AAGTTTCATATCCTAGTCAG+TGG - chr4_1:45009668-45009687 Msa0549790:intron 35.0%
CATTCTTGCAACTTGTACAA+AGG + chr4_1:45009698-45009717 None:intergenic 35.0%
! CTTTTCAAACAGATGCTTGA+GGG - chr4_1:45009805-45009824 Msa0549790:intron 35.0%
! ATGCATTTTGTATCTGTGAC+TGG - chr4_1:45010095-45010114 Msa0549790:CDS 35.0%
! TGCATTTTGTATCTGTGACT+GGG - chr4_1:45010096-45010115 Msa0549790:CDS 35.0%
GCATCAAATGCAGAGTTAAT+TGG - chr4_1:45010132-45010151 Msa0549790:CDS 35.0%
TATAGACGTGTGTTAATCAG+TGG - chr4_1:45010366-45010385 Msa0549790:five_prime_UTR 35.0%
ATAGACGTGTGTTAATCAGT+GGG - chr4_1:45010367-45010386 Msa0549790:five_prime_UTR 35.0%
AATTGGATTATATGCAGTCG+AGG - chr4_1:45010390-45010409 Msa0549790:five_prime_UTR 35.0%
GTTGAAGAAGCAAAGGACTT+TGG - chr4_1:44998155-44998174 Msa0549790:three_prime_UTR 40.0%
CAATTACGCTGTGAACTTCA+CGG - chr4_1:44998256-44998275 Msa0549790:three_prime_UTR 40.0%
GTGACAAAACGGTTAGGTTA+TGG - chr4_1:44998347-44998366 Msa0549790:three_prime_UTR 40.0%
TCGCAAATTCGTCTTGAACA+AGG - chr4_1:44998381-44998400 Msa0549790:three_prime_UTR 40.0%
GTCTTGAACAAGGTTCTTGT+AGG - chr4_1:44998391-44998410 Msa0549790:three_prime_UTR 40.0%
! TGTAGGTCACACAAGTTTTG+TGG - chr4_1:44998408-44998427 Msa0549790:three_prime_UTR 40.0%
!! GTAGGTCACACAAGTTTTGT+GGG - chr4_1:44998409-44998428 Msa0549790:three_prime_UTR 40.0%
! GTTTTGTGGGACCTATATCA+TGG - chr4_1:44998422-44998441 Msa0549790:three_prime_UTR 40.0%
TTCGGTGGAATCCATGATAT+AGG + chr4_1:44998436-44998455 None:intergenic 40.0%
TGGTATGGATACTCTTGTGT+TGG - chr4_1:44998489-44998508 Msa0549790:exon 40.0%
!! TGGATACTCTTGTGTTGGTT+TGG - chr4_1:44998494-44998513 Msa0549790:exon 40.0%
!! GGATACTCTTGTGTTGGTTT+GGG - chr4_1:44998495-44998514 Msa0549790:exon 40.0%
!! TTGGTTTGGGACTTGAATAG+TGG - chr4_1:44998508-44998527 Msa0549790:CDS 40.0%
ATTGCAGGTTACTGGTATTG+TGG - chr4_1:44998561-44998580 Msa0549790:CDS 40.0%
!! ACTGGTATTGTGGTTGATGA+TGG - chr4_1:44998571-44998590 Msa0549790:CDS 40.0%
GTCTTAGTAGTAAGGGATTC+AGG - chr4_1:44998718-44998737 Msa0549790:intron 40.0%
GATTCAGGTGCTTAAGTAAG+TGG - chr4_1:44998733-44998752 Msa0549790:intron 40.0%
TTCGATCATGTTTCTTGCGT+AGG - chr4_1:44998763-44998782 Msa0549790:intron 40.0%
TCGATCATGTTTCTTGCGTA+GGG - chr4_1:44998764-44998783 Msa0549790:intron 40.0%
TGGAAATTGTTGGGTCATGA+GGG - chr4_1:44998880-44998899 Msa0549790:intron 40.0%
! TAAGATCAGCGCTTTTGTGT+GGG - chr4_1:44998960-44998979 Msa0549790:intron 40.0%
GTGCTAAGACTAGACATGAT+AGG - chr4_1:44999046-44999065 Msa0549790:intron 40.0%
! GGTGGAAAATTTGGCTTAAG+TGG - chr4_1:44999139-44999158 Msa0549790:intron 40.0%
! TGTCGGCTACATGGATAAAA+CGG + chr4_1:44999330-44999349 None:intergenic 40.0%
TTTGTCCCACTAAGTAGTGT+CGG + chr4_1:44999347-44999366 None:intergenic 40.0%
! TCTTGTGTAGTACTTTGAGG+AGG - chr4_1:44999515-44999534 Msa0549790:intron 40.0%
! GTGACACTACTTTAAAGACC+TGG - chr4_1:44999771-44999790 Msa0549790:intron 40.0%
! CACTACTTTAAAGACCTGGA+AGG - chr4_1:44999775-44999794 Msa0549790:intron 40.0%
! TAAACATGTTTTGCCCTTCC+AGG + chr4_1:44999792-44999811 None:intergenic 40.0%
!! CATACTTTTCAAGGACATGC+AGG - chr4_1:44999812-44999831 Msa0549790:intron 40.0%
! TCATATTTCTATGAGTGGCG+AGG - chr4_1:44999929-44999948 Msa0549790:intron 40.0%
ATGTCCTAAAATCGAAGGCA+CGG + chr4_1:44999987-45000006 None:intergenic 40.0%
CTGCCAAAATCATGTTCACA+AGG + chr4_1:45000032-45000051 None:intergenic 40.0%
GCAAATGCTGATAACCTTTG+AGG - chr4_1:45000139-45000158 Msa0549790:intron 40.0%
GAATGTACAGATACTGTTCG+TGG - chr4_1:45000161-45000180 Msa0549790:intron 40.0%
ATCCTATCTGCATCTCATGA+TGG - chr4_1:45000209-45000228 Msa0549790:CDS 40.0%
TCCTATCTGCATCTCATGAT+GGG - chr4_1:45000210-45000229 Msa0549790:CDS 40.0%
GTAACAGAAACAAGTCAAGC+AGG + chr4_1:45000313-45000332 None:intergenic 40.0%
! TGGTGAAGTGTTAATGGAGA+TGG - chr4_1:45000362-45000381 Msa0549790:intron 40.0%
! GAAGTGTTAATGGAGATGGT+TGG - chr4_1:45000366-45000385 Msa0549790:intron 40.0%
! TCAGTTGATTCACATGCATC+AGG - chr4_1:45000408-45000427 Msa0549790:intron 40.0%
!!! TGGGGGAATTTTTTGTTGTG+GGG - chr4_1:45000623-45000642 Msa0549790:intron 40.0%
!!! GAATTTTTTGTTGTGGGGGT+AGG - chr4_1:45000628-45000647 Msa0549790:intron 40.0%
!!! ATTTTTTGTTGTGGGGGTAG+GGG - chr4_1:45000630-45000649 Msa0549790:intron 40.0%
AGATTCTTACAACTGTTGGC+CGG + chr4_1:45000676-45000695 None:intergenic 40.0%
!! TCAGTGATAATGGAAGAGAC+AGG + chr4_1:45000917-45000936 None:intergenic 40.0%
!!! AGTTTTTTTCGCCACATCTC+AGG - chr4_1:45001025-45001044 Msa0549790:intron 40.0%
TTTGTATCCCAAACACAACC+AGG + chr4_1:45001128-45001147 None:intergenic 40.0%
ATTGTGACAGCATGTTCTGA+TGG - chr4_1:45001167-45001186 Msa0549790:intron 40.0%
CTGATGGAATTGTACGCATT+TGG - chr4_1:45001183-45001202 Msa0549790:intron 40.0%
ACGCATTTGGACTGTAAATC+AGG - chr4_1:45001196-45001215 Msa0549790:intron 40.0%
!!! CTAGTAGGTACGCTTTTTTG+TGG - chr4_1:45001279-45001298 Msa0549790:intron 40.0%
TTGAAATTGGAGGAGTTACC+AGG - chr4_1:45001603-45001622 Msa0549790:intron 40.0%
TTGTGAACAGGAACTTCTGA+TGG - chr4_1:45001767-45001786 Msa0549790:intron 40.0%
! CCTCTCTGACAACTTTTGTT+TGG + chr4_1:45001793-45001812 None:intergenic 40.0%
CCAAACAAAAGTTGTCAGAG+AGG - chr4_1:45001790-45001809 Msa0549790:intron 40.0%
GAACATGGCAGAACAGAAAT+GGG - chr4_1:45001838-45001857 Msa0549790:intron 40.0%
CTAAGGGAACAGAATTACAG+AGG + chr4_1:45001882-45001901 None:intergenic 40.0%
CAGAACTTGGGATTGACTAA+GGG + chr4_1:45001898-45001917 None:intergenic 40.0%
TATTTGGCACTGCAGAACTT+GGG + chr4_1:45001910-45001929 None:intergenic 40.0%
ATATTTGGCACTGCAGAACT+TGG + chr4_1:45001911-45001930 None:intergenic 40.0%
TGGCTATTCAGTGTTTGATG+TGG - chr4_1:45002129-45002148 Msa0549790:intron 40.0%
TTGTATGGCAACTTCCTGAT+AGG + chr4_1:45002172-45002191 None:intergenic 40.0%
TTTGTACCTGATCGGTTGTA+TGG + chr4_1:45002187-45002206 None:intergenic 40.0%
AGGTACAAAATTTACCCACG+AGG - chr4_1:45002198-45002217 Msa0549790:intron 40.0%
CAATTAAAGTTGCAACCTCG+TGG + chr4_1:45002216-45002235 None:intergenic 40.0%
GACAGTAACATCAATTGTCG+TGG + chr4_1:45002270-45002289 None:intergenic 40.0%
CAACCAACAACTGGTATGTT+AGG - chr4_1:45002495-45002514 Msa0549790:intron 40.0%
!!! AGGCTGTTTTTATTTCCAGG+AGG - chr4_1:45002515-45002534 Msa0549790:intron 40.0%
TACATATGCAATTTGCCTCC+TGG + chr4_1:45002533-45002552 None:intergenic 40.0%
TACTGTGACTTAAGACGTCA+AGG + chr4_1:45002680-45002699 None:intergenic 40.0%
TAGGACTTTAGATTGCAGAG+AGG - chr4_1:45002725-45002744 Msa0549790:CDS 40.0%
ACTGATCAGACTAAATGGGT+TGG + chr4_1:45002891-45002910 None:intergenic 40.0%
! AGTCACATGGACAAACCTTT+TGG + chr4_1:45003054-45003073 None:intergenic 40.0%
GCAGCATCATATGCATTATC+TGG + chr4_1:45003117-45003136 None:intergenic 40.0%
TGCTGATAAATGGCTACTCA+AGG - chr4_1:45003134-45003153 Msa0549790:intron 40.0%
TGATAAATGGCTACTCAAGG+AGG - chr4_1:45003137-45003156 Msa0549790:intron 40.0%
GATAAATGGCTACTCAAGGA+GGG - chr4_1:45003138-45003157 Msa0549790:intron 40.0%
ACTTGCTCACGAAAAGAAAG+AGG + chr4_1:45003168-45003187 None:intergenic 40.0%
TAATTACCAGATGTGCGAGA+AGG + chr4_1:45003421-45003440 None:intergenic 40.0%
! TCTTGTTATCTTGTGCCCTT+AGG - chr4_1:45003494-45003513 Msa0549790:intron 40.0%
! CTTGTTATCTTGTGCCCTTA+GGG - chr4_1:45003495-45003514 Msa0549790:intron 40.0%
AATTCCTTAGTATGTGCCCT+TGG - chr4_1:45003632-45003651 Msa0549790:intron 40.0%
ATTCCTTAGTATGTGCCCTT+GGG - chr4_1:45003633-45003652 Msa0549790:intron 40.0%
AATGCTAACATGTTCCCCAA+GGG + chr4_1:45003651-45003670 None:intergenic 40.0%
AAATGCTAACATGTTCCCCA+AGG + chr4_1:45003652-45003671 None:intergenic 40.0%
! AGTGTATGAAAGCACACCTT+AGG + chr4_1:45003773-45003792 None:intergenic 40.0%
CTGGGTTTGACTAACGTATT+GGG + chr4_1:45003957-45003976 None:intergenic 40.0%
!! GGATACGTTGATTCTGTTCA+AGG - chr4_1:45004161-45004180 Msa0549790:intron 40.0%
! CACAAGTTGGATCAAACACT+TGG + chr4_1:45004401-45004420 None:intergenic 40.0%
CAAGTGTTTGATCCAACTTG+TGG - chr4_1:45004399-45004418 Msa0549790:intron 40.0%
CAATAAGGAGGTTTGAGCAT+TGG + chr4_1:45004474-45004493 None:intergenic 40.0%
! TATGTAGCTCTGCAATAAGG+AGG + chr4_1:45004486-45004505 None:intergenic 40.0%
! TAATGCCTTATTATCCGACC+AGG - chr4_1:45004639-45004658 Msa0549790:intron 40.0%
TTCCTAGGAATAACATACCG+TGG - chr4_1:45004790-45004809 Msa0549790:intron 40.0%
TTCCACGGTATGTTATTCCT+AGG + chr4_1:45004795-45004814 None:intergenic 40.0%
ACTCCCGACTTTATATTCCA+CGG + chr4_1:45004810-45004829 None:intergenic 40.0%
!! TCCACTTTTCACCCTTAACA+TGG - chr4_1:45004941-45004960 Msa0549790:intron 40.0%
!! CCACTTTTCACCCTTAACAT+GGG - chr4_1:45004942-45004961 Msa0549790:intron 40.0%
! TGCCTTTTGATGTTAGACAC+GGG - chr4_1:45005101-45005120 Msa0549790:intron 40.0%
! GACAGGATTTTCTGTGTCTA+CGG - chr4_1:45005224-45005243 Msa0549790:CDS 40.0%
!! GGTGCTATTGTCAATCTCAT+AGG - chr4_1:45005351-45005370 Msa0549790:intron 40.0%
CAGTCTGGTAAAATCCAACT+CGG + chr4_1:45005398-45005417 None:intergenic 40.0%
TTTAACAATGGCATCCAGTC+TGG + chr4_1:45005413-45005432 None:intergenic 40.0%
CCAGGAAATATCATTGTGGT+TGG + chr4_1:45005520-45005539 None:intergenic 40.0%
CCAACCACAATGATATTTCC+TGG - chr4_1:45005517-45005536 Msa0549790:intron 40.0%
!! AGTACACTTCTCTGGTCTTA+AGG - chr4_1:45005637-45005656 Msa0549790:intron 40.0%
ATGGTAATTCTTCACCCAGA+CGG - chr4_1:45005719-45005738 Msa0549790:intron 40.0%
AGACTTGTAGATTCTGAGCA+AGG - chr4_1:45006096-45006115 Msa0549790:intron 40.0%
CTACAAGGATCAAATGGCAT+TGG + chr4_1:45006252-45006271 None:intergenic 40.0%
ACAGATTTGCAGGAATCGTT+GGG + chr4_1:45006422-45006441 None:intergenic 40.0%
AACAGATTTGCAGGAATCGT+TGG + chr4_1:45006423-45006442 None:intergenic 40.0%
TTTGTGGTTAATTCTGGTGG+TGG - chr4_1:45006903-45006922 Msa0549790:intron 40.0%
!! TTAATTCTGGTGGTGGATCT+TGG - chr4_1:45006910-45006929 Msa0549790:intron 40.0%
! CTGAAGTCTTTTCTTGACCT+AGG - chr4_1:45007064-45007083 Msa0549790:intron 40.0%
! ATTCCTTTTCTCATAAGGGC+TGG + chr4_1:45007357-45007376 None:intergenic 40.0%
CCTTTCATAAACCGTCCATA+TGG + chr4_1:45007602-45007621 None:intergenic 40.0%
CCATATGGACGGTTTATGAA+AGG - chr4_1:45007599-45007618 Msa0549790:intron 40.0%
ATGGACGGTTTATGAAAGGA+AGG - chr4_1:45007603-45007622 Msa0549790:intron 40.0%
GAAGACTAAGTTTACTCGTG+AGG + chr4_1:45007813-45007832 None:intergenic 40.0%
GAGAAGGCAACTACTGATAA+GGG + chr4_1:45007875-45007894 None:intergenic 40.0%
TGAGAAGGCAACTACTGATA+AGG + chr4_1:45007876-45007895 None:intergenic 40.0%
TTCTTGAATGTGGGTGCATT+TGG - chr4_1:45007966-45007985 Msa0549790:intron 40.0%
AAGTATAGACAGTAAAGCGG+TGG - chr4_1:45008044-45008063 Msa0549790:CDS 40.0%
GAGGATCACATCAAAAGTCA+AGG + chr4_1:45008180-45008199 None:intergenic 40.0%
TCAATAGCACTGCATAACTG+AGG + chr4_1:45008199-45008218 None:intergenic 40.0%
!! TATCTCAAGAGGAGTACTCT+TGG + chr4_1:45008455-45008474 None:intergenic 40.0%
TGGCACATAGACAAAACTGA+AGG - chr4_1:45008499-45008518 Msa0549790:intron 40.0%
CAAGACAGAACAGAACATAC+AGG + chr4_1:45008615-45008634 None:intergenic 40.0%
AGAATTGTTGTGTTGGGAAG+TGG - chr4_1:45008962-45008981 Msa0549790:intron 40.0%
! CTTCTTGAGGAGCTTTAGTT+TGG + chr4_1:45009064-45009083 None:intergenic 40.0%
TTTCGTGCTTTAGTTGCTGT+TGG - chr4_1:45009222-45009241 Msa0549790:intron 40.0%
! TTTAGTTGCTGTTGGATCAC+TGG - chr4_1:45009230-45009249 Msa0549790:intron 40.0%
ACTCGTTAGCAACAGTAGAA+CGG + chr4_1:45009420-45009439 None:intergenic 40.0%
GAAGAGACTAATAGATGGAG+AGG - chr4_1:45009598-45009617 Msa0549790:intron 40.0%
GACCTATTAGCAAAAACTGC+TGG - chr4_1:45009637-45009656 Msa0549790:intron 40.0%
! ACCCAGCAGTTTTTGCTAAT+AGG + chr4_1:45009642-45009661 None:intergenic 40.0%
CCTCAAGCATCTGTTTGAAA+AGG + chr4_1:45009807-45009826 None:intergenic 40.0%
! CCTTTTCAAACAGATGCTTG+AGG - chr4_1:45009804-45009823 Msa0549790:intron 40.0%
AGCATTGCAAAAGCAGCAAA+GGG - chr4_1:45009865-45009884 Msa0549790:CDS 40.0%
AAAAGCAGCAAAGGGTTCTA+AGG - chr4_1:45009873-45009892 Msa0549790:CDS 40.0%
AGATCCTACTTCAGCAATCT+TGG + chr4_1:45009902-45009921 None:intergenic 40.0%
! GCATTTTGTATCTGTGACTG+GGG - chr4_1:45010097-45010116 Msa0549790:CDS 40.0%
! CATTTTGTATCTGTGACTGG+GGG - chr4_1:45010098-45010117 Msa0549790:CDS 40.0%
! ATTTTGTATCTGTGACTGGG+GGG - chr4_1:45010099-45010118 Msa0549790:CDS 40.0%
GTGTGTTAATCAGTGGGAAT+TGG - chr4_1:45010373-45010392 Msa0549790:five_prime_UTR 40.0%
GAAGGAGGTTGAAGAAGCAA+AGG - chr4_1:44998148-44998167 Msa0549790:three_prime_UTR 45.0%
GAAGCAAAGGACTTTGGGTA+AGG - chr4_1:44998161-44998180 Msa0549790:three_prime_UTR 45.0%
CGTGAAGTTCACAGCGTAAT+TGG + chr4_1:44998258-44998277 None:intergenic 45.0%
AACCTCATCGCGTGACAAAA+CGG - chr4_1:44998336-44998355 Msa0549790:three_prime_UTR 45.0%
!! TGGTGTTGTTTCTGGTGGTA+TGG - chr4_1:44998474-44998493 Msa0549790:three_prime_UTR 45.0%
GGACTTGAATAGTGGTGAGA+AGG - chr4_1:44998516-44998535 Msa0549790:CDS 45.0%
! GAGAAGGTGCAGAGTCTTAA+AGG - chr4_1:44998532-44998551 Msa0549790:CDS 45.0%
GGTCATCAATTGCAGGTTAC+TGG - chr4_1:44998553-44998572 Msa0549790:CDS 45.0%
TCAGGTGCTTAAGTAAGTGG+TGG - chr4_1:44998736-44998755 Msa0549790:intron 45.0%
CAGGTGCTTAAGTAAGTGGT+GGG - chr4_1:44998737-44998756 Msa0549790:intron 45.0%
TCTTGCGTAGGGTGAAAACT+TGG - chr4_1:44998775-44998794 Msa0549790:intron 45.0%
ATTCACTTTCTGTGCTCCAC+AGG - chr4_1:44998822-44998841 Msa0549790:intron 45.0%
AATCTCCGTCATTGAACCTG+TGG + chr4_1:44998841-44998860 None:intergenic 45.0%
GTGGAAATTGTTGGGTCATG+AGG - chr4_1:44998879-44998898 Msa0549790:intron 45.0%
! GTAAGATCAGCGCTTTTGTG+TGG - chr4_1:44998959-44998978 Msa0549790:intron 45.0%
TGGAGATGTGGATGTTATGC+TGG - chr4_1:44999019-44999038 Msa0549790:intron 45.0%
TAGAGACAGAGAGAGAGAGA+TGG - chr4_1:44999093-44999112 Msa0549790:intron 45.0%
AGAGACAGAGAGAGAGAGAT+GGG - chr4_1:44999094-44999113 Msa0549790:intron 45.0%
!! ACTAAGTAGTGTCGGCTACA+TGG + chr4_1:44999339-44999358 None:intergenic 45.0%
ATGTAGCCGACACTACTTAG+TGG - chr4_1:44999338-44999357 Msa0549790:intron 45.0%
TGTAGCCGACACTACTTAGT+GGG - chr4_1:44999339-44999358 Msa0549790:intron 45.0%
! TGTGTAGTACTTTGAGGAGG+TGG - chr4_1:44999518-44999537 Msa0549790:intron 45.0%
ATGGGCAATGCATAGAGACA+TGG - chr4_1:44999545-44999564 Msa0549790:intron 45.0%
TGGGCAATGCATAGAGACAT+GGG - chr4_1:44999546-44999565 Msa0549790:intron 45.0%
GCAGTTATAAAGCTACCCAC+AGG - chr4_1:44999592-44999611 Msa0549790:intron 45.0%
TACAGATACTGTTCGTGGCT+TGG - chr4_1:45000166-45000185 Msa0549790:intron 45.0%
TTGGCTGTGATGTCTGATCT+TGG - chr4_1:45000185-45000204 Msa0549790:CDS 45.0%
ACCCATCATGAGATGCAGAT+AGG + chr4_1:45000214-45000233 None:intergenic 45.0%
! TATCTGCATCTCATGATGGG+TGG - chr4_1:45000213-45000232 Msa0549790:CDS 45.0%
!! ATCTGCATCTCATGATGGGT+GGG - chr4_1:45000214-45000233 Msa0549790:CDS 45.0%
CTGAGATTATGGGCAGTAAG+TGG - chr4_1:45000342-45000361 Msa0549790:intron 45.0%
GCATCAGGACTTATTGTCAG+TGG - chr4_1:45000423-45000442 Msa0549790:intron 45.0%
!!! GGGGGAATTTTTTGTTGTGG+GGG - chr4_1:45000624-45000643 Msa0549790:intron 45.0%
!!! TTTTTTGTTGTGGGGGTAGG+GGG - chr4_1:45000631-45000650 Msa0549790:intron 45.0%
TGTCATCCCACTCCTTATTC+CGG - chr4_1:45000654-45000673 Msa0549790:intron 45.0%
TACAACTGTTGGCCGGAATA+AGG + chr4_1:45000669-45000688 None:intergenic 45.0%
CTTTCACAATCCGTAGCTTC+AGG - chr4_1:45000736-45000755 Msa0549790:intron 45.0%
ATCAAATTGCCGTGCATGTG+AGG - chr4_1:45000936-45000955 Msa0549790:intron 45.0%
ATAAAACGGATGCGTTCGAG+TGG + chr4_1:45000985-45001004 None:intergenic 45.0%
AGCAACAAGTTCCTGAGATG+TGG + chr4_1:45001039-45001058 None:intergenic 45.0%
!! CATCTCAGGAACTTGTTGCT+CGG - chr4_1:45001039-45001058 Msa0549790:intron 45.0%
! TAGAGCATCCTGGTTGTGTT+TGG - chr4_1:45001117-45001136 Msa0549790:intron 45.0%
! AGAGCATCCTGGTTGTGTTT+GGG - chr4_1:45001118-45001137 Msa0549790:intron 45.0%
TATGCTAGAAAGAGGGTTGG+AGG - chr4_1:45001579-45001598 Msa0549790:intron 45.0%
GAGGGTTGGAGGATTGAAAT+TGG - chr4_1:45001590-45001609 Msa0549790:intron 45.0%
GGTTGGAGGATTGAAATTGG+AGG - chr4_1:45001593-45001612 Msa0549790:intron 45.0%
ATCTTCAGTGTATCCAAGCC+TGG + chr4_1:45001624-45001643 None:intergenic 45.0%
TTGGATACACTGAAGATCCC+AGG - chr4_1:45001627-45001646 Msa0549790:intron 45.0%
ACATAATCCGACAACCCATC+TGG - chr4_1:45001744-45001763 Msa0549790:intron 45.0%
!! TTCACAACCAGATGGGTTGT+CGG + chr4_1:45001754-45001773 None:intergenic 45.0%
GTTCCTGTTCACAACCAGAT+GGG + chr4_1:45001761-45001780 None:intergenic 45.0%
AGTTCCTGTTCACAACCAGA+TGG + chr4_1:45001762-45001781 None:intergenic 45.0%
GTTGTCAGAGAGGGAGATAA+CGG - chr4_1:45001800-45001819 Msa0549790:intron 45.0%
! ATAACGGAGTTGCGTATGCA+TGG - chr4_1:45001816-45001835 Msa0549790:intron 45.0%
AGTTGCGTATGCATGGAACA+TGG - chr4_1:45001823-45001842 Msa0549790:intron 45.0%
GGAACATGGCAGAACAGAAA+TGG - chr4_1:45001837-45001856 Msa0549790:intron 45.0%
GCAGAACTTGGGATTGACTA+AGG + chr4_1:45001899-45001918 None:intergenic 45.0%
! TGGTGAAGTTGTTGATGGAC+CGG - chr4_1:45001983-45002002 Msa0549790:CDS 45.0%
AGAGGGCGATTTGATTCTTC+CGG + chr4_1:45002005-45002024 None:intergenic 45.0%
ACTGAACACCATCGAAGAGA+GGG + chr4_1:45002022-45002041 None:intergenic 45.0%
TACTGAACACCATCGAAGAG+AGG + chr4_1:45002023-45002042 None:intergenic 45.0%
TTGGAGATGGTATGCCTATC+AGG - chr4_1:45002155-45002174 Msa0549790:intron 45.0%
AAGTTGCCATACAACCGATC+AGG - chr4_1:45002178-45002197 Msa0549790:intron 45.0%
CAGCCTAACATACCAGTTGT+TGG + chr4_1:45002501-45002520 None:intergenic 45.0%
GGGCTTAGGAATGATGTGTT+AGG - chr4_1:45002840-45002859 Msa0549790:intron 45.0%
TCATTTCGTGATCCGTACAC+CGG - chr4_1:45003240-45003259 Msa0549790:intron 45.0%
TTGTACTTACAGCCGGTGTA+CGG + chr4_1:45003255-45003274 None:intergenic 45.0%
TTGACCTGGTACGTAAGCAT+TGG + chr4_1:45003398-45003417 None:intergenic 45.0%
TGCCCTTAGGGTACAAGTTA+AGG - chr4_1:45003507-45003526 Msa0549790:intron 45.0%
TTCCTTAGTATGTGCCCTTG+GGG - chr4_1:45003634-45003653 Msa0549790:intron 45.0%
CCTGGGTTTGACTAACGTAT+TGG + chr4_1:45003958-45003977 None:intergenic 45.0%
CCAATACGTTAGTCAAACCC+AGG - chr4_1:45003955-45003974 Msa0549790:intron 45.0%
AAACCCAGGTTATGTCGCAA+AGG - chr4_1:45003969-45003988 Msa0549790:intron 45.0%
!! TCTGTTCAAGGCATTGCTCT+AGG - chr4_1:45004173-45004192 Msa0549790:intron 45.0%
CAAGCATCCCTTTCTGACAA+TGG + chr4_1:45004567-45004586 None:intergenic 45.0%
AATCATGTAGCCTACCTGGT+CGG + chr4_1:45004656-45004675 None:intergenic 45.0%
AACCAATCATGTAGCCTACC+TGG + chr4_1:45004660-45004679 None:intergenic 45.0%
!! CTTAGGGGGTGTTTGTTTCA+TGG - chr4_1:45004755-45004774 Msa0549790:intron 45.0%
AAAGTCGGGAGTTTGATTCC+TGG - chr4_1:45004818-45004837 Msa0549790:intron 45.0%
AAGTCGGGAGTTTGATTCCT+GGG - chr4_1:45004819-45004838 Msa0549790:intron 45.0%
CCCATGTTAAGGGTGAAAAG+TGG + chr4_1:45004945-45004964 None:intergenic 45.0%
ATTCCTGGGAATACATGGGT+GGG + chr4_1:45004979-45004998 None:intergenic 45.0%
!! TTAAGGGGGTGCTTGTTTGA+AGG + chr4_1:45005013-45005032 None:intergenic 45.0%
! GCACCCCCTTAATTTTACGA+TGG - chr4_1:45005021-45005040 Msa0549790:intron 45.0%
GTCCCGTGTCTAACATCAAA+AGG + chr4_1:45005106-45005125 None:intergenic 45.0%
GAAGTTGTCTTTGACCGAGT+TGG - chr4_1:45005381-45005400 Msa0549790:intron 45.0%
!! CGAGTTGGATTTTACCAGAC+TGG - chr4_1:45005396-45005415 Msa0549790:intron 45.0%
TGGTAATTCTTCACCCAGAC+GGG - chr4_1:45005720-45005739 Msa0549790:intron 45.0%
AGATCGGAATGTTGTGCTAG+AGG - chr4_1:45005977-45005996 Msa0549790:intron 45.0%
TGGTTGCATCTAAACTTCGG+TGG - chr4_1:45006055-45006074 Msa0549790:intron 45.0%
GCATCTAAACTTCGGTGGTT+TGG - chr4_1:45006060-45006079 Msa0549790:intron 45.0%
GGAAGGCCAAGTAAAGATGT+AGG - chr4_1:45006161-45006180 Msa0549790:intron 45.0%
! GGTTGGCTACAAGGATCAAA+TGG + chr4_1:45006258-45006277 None:intergenic 45.0%
! AAGTCTTATCCCACTAGGTG+AGG + chr4_1:45006279-45006298 None:intergenic 45.0%
TCACCTAGTGGGATAAGACT+TGG - chr4_1:45006278-45006297 Msa0549790:CDS 45.0%
! CAACCAAGTCTTATCCCACT+AGG + chr4_1:45006284-45006303 None:intergenic 45.0%
TGCAGGAATCGTTGGGTTTA+TGG + chr4_1:45006415-45006434 None:intergenic 45.0%
!! GAAAACACAGGAGCACTTCA+AGG + chr4_1:45007255-45007274 None:intergenic 45.0%
!! TGAAGTGCTCCTGTGTTTTC+CGG - chr4_1:45007255-45007274 Msa0549790:CDS 45.0%
TTGAAGAACCCTTGATGGGA+AGG - chr4_1:45007546-45007565 Msa0549790:intron 45.0%
AGTAGTTGCCTTCCCATCAA+GGG + chr4_1:45007557-45007576 None:intergenic 45.0%
TGGGAAGGCAACTACTGATA+AGG - chr4_1:45007561-45007580 Msa0549790:intron 45.0%
TATGGGAATCCCCATATGGA+CGG - chr4_1:45007588-45007607 Msa0549790:intron 45.0%
AGGAAGGCTAAGAAGAGTAG+TGG - chr4_1:45007619-45007638 Msa0549790:intron 45.0%
! CTTGTCTAGGGTAGATGAGA+AGG + chr4_1:45007891-45007910 None:intergenic 45.0%
ACCGAGAAGCTATTCCAAAC+TGG - chr4_1:45007925-45007944 Msa0549790:intron 45.0%
! CCCAGTTTGGAATAGCTTCT+CGG + chr4_1:45007929-45007948 None:intergenic 45.0%
CCGAGAAGCTATTCCAAACT+GGG - chr4_1:45007926-45007945 Msa0549790:intron 45.0%
CTATACTTAATGCAGACGGG+TGG + chr4_1:45008032-45008051 None:intergenic 45.0%
TATAGACAGTAAAGCGGTGG+TGG - chr4_1:45008047-45008066 Msa0549790:CDS 45.0%
TCTGAGAGCAAATCACTGCA+AGG + chr4_1:45008118-45008137 None:intergenic 45.0%
TGTTCTATCAGCAGCACTTG+AGG - chr4_1:45008250-45008269 Msa0549790:CDS 45.0%
!! GTGATGTGTTGTTTGAACCC+AGG + chr4_1:45008296-45008315 None:intergenic 45.0%
ATACAGCCGACTGCAATTGA+TGG + chr4_1:45008348-45008367 None:intergenic 45.0%
!!! GGATTTTTTGGGTATCGGCA+TGG - chr4_1:45008419-45008438 Msa0549790:intron 45.0%
! AGAGGGTTTTCCAAGTGCTT+CGG + chr4_1:45008663-45008682 None:intergenic 45.0%
! GGGTGCTATGATAGAGATCT+GGG + chr4_1:45008764-45008783 None:intergenic 45.0%
! TGGGTGCTATGATAGAGATC+TGG + chr4_1:45008765-45008784 None:intergenic 45.0%
TAAAGCTCCTCAAGAAGCAG+AGG - chr4_1:45009067-45009086 Msa0549790:intron 45.0%
GATTGTCGAGGATGAAAACG+TGG - chr4_1:45009185-45009204 Msa0549790:intron 45.0%
! GAGCATTGCAAAAGCAGCAA+AGG - chr4_1:45009864-45009883 Msa0549790:CDS 45.0%
GACTCCAAGATTGCTGAAGT+AGG - chr4_1:45009895-45009914 Msa0549790:CDS 45.0%
GTGTGCACGTGTCTGATTAT+GGG + chr4_1:45010054-45010073 None:intergenic 45.0%
TGTGTGCACGTGTCTGATTA+TGG + chr4_1:45010055-45010074 None:intergenic 45.0%
TAATCAGACACGTGCACACA+TGG - chr4_1:45010055-45010074 Msa0549790:CDS 45.0%
!! TAATAATAATAATAAATTGA+CGG - chr4_1:45003297-45003316 Msa0549790:intron 5.0%
!!! TTTTGAATAAAATAAAATAA+AGG - chr4_1:45003909-45003928 Msa0549790:intron 5.0%
!! ATTACATATTAATAATTAAT+GGG + chr4_1:45004699-45004718 None:intergenic 5.0%
!! TATTACATATTAATAATTAA+TGG + chr4_1:45004700-45004719 None:intergenic 5.0%
!!! ATTATTTAAAATATTGAATT+TGG - chr4_1:45009106-45009125 Msa0549790:intron 5.0%
!!! TTATTTAAAATATTGAATTT+GGG - chr4_1:45009107-45009126 Msa0549790:intron 5.0%
! CTCTCTCGCTCTCTCTAGAA+TGG - chr4_1:44998213-44998232 Msa0549790:three_prime_UTR 50.0%
GTTCGCGGAATAACCATCTG+CGG - chr4_1:44998292-44998311 Msa0549790:three_prime_UTR 50.0%
! AACCGTTTTGTCACGCGATG+AGG + chr4_1:44998341-44998360 None:intergenic 50.0%
CATCGCGTGACAAAACGGTT+AGG - chr4_1:44998341-44998360 Msa0549790:three_prime_UTR 50.0%
! GTGCTTAAGTAAGTGGTGGG+AGG - chr4_1:44998740-44998759 Msa0549790:intron 50.0%
GTGCTCCACAGGTTCAATGA+CGG - chr4_1:44998833-44998852 Msa0549790:intron 50.0%
! GTAGTACTTTGAGGAGGTGG+AGG - chr4_1:44999521-44999540 Msa0549790:intron 50.0%
! ACTTTGAGGAGGTGGAGGAA+TGG - chr4_1:44999526-44999545 Msa0549790:intron 50.0%
! CTTTGAGGAGGTGGAGGAAT+GGG - chr4_1:44999527-44999546 Msa0549790:intron 50.0%
GCAATGCATAGAGACATGGG+AGG - chr4_1:44999549-44999568 Msa0549790:intron 50.0%
CCTGTAACAAGCTCTCCTGT+GGG + chr4_1:44999610-44999629 None:intergenic 50.0%
ACCTGTAACAAGCTCTCCTG+TGG + chr4_1:44999611-44999630 None:intergenic 50.0%
! TGGTCCGTGCCTTCGATTTT+AGG - chr4_1:44999980-44999999 Msa0549790:intron 50.0%
! TTTTATGCTGCCAGGGAGTG+CGG - chr4_1:45000065-45000084 Msa0549790:intron 50.0%
GAAAAATATGCCGCACTCCC+TGG + chr4_1:45000078-45000097 None:intergenic 50.0%
TGTTGGCCGGAATAAGGAGT+GGG + chr4_1:45000663-45000682 None:intergenic 50.0%
TGAAAGTTGCAGCTGAGCTG+TGG + chr4_1:45000722-45000741 None:intergenic 50.0%
! GTTCAGAGCATAGAGCATCC+TGG - chr4_1:45001107-45001126 Msa0549790:intron 50.0%
ATTGGAGGAGTTACCAGGCT+TGG - chr4_1:45001608-45001627 Msa0549790:intron 50.0%
CAACCCATCTGGTTGTGAAC+AGG - chr4_1:45001755-45001774 Msa0549790:intron 50.0%
TCAAATCGCCCTCTCTTCGA+TGG - chr4_1:45002011-45002030 Msa0549790:CDS 50.0%
GGGTCAAGTCAACCAACAAC+TGG - chr4_1:45002486-45002505 Msa0549790:intron 50.0%
AGGGTTACGTAATGAGGGCA+AGG + chr4_1:45002994-45003013 None:intergenic 50.0%
TCAGCCAATGCTTACGTACC+AGG - chr4_1:45003391-45003410 Msa0549790:intron 50.0%
! TTCCCCAAGGGCACATACTA+AGG + chr4_1:45003639-45003658 None:intergenic 50.0%
GCACCTTTGCGACATAACCT+GGG + chr4_1:45003975-45003994 None:intergenic 50.0%
TGCACCTTTGCGACATAACC+TGG + chr4_1:45003976-45003995 None:intergenic 50.0%
!! GTTCAAGGCATTGCTCTAGG+TGG - chr4_1:45004176-45004195 Msa0549790:intron 50.0%
! GCCTTATTATCCGACCAGGT+AGG - chr4_1:45004643-45004662 Msa0549790:intron 50.0%
GCCTACCTGGTCGGATAATA+AGG + chr4_1:45004647-45004666 None:intergenic 50.0%
GACCAGGTAGGCTACATGAT+TGG - chr4_1:45004655-45004674 Msa0549790:intron 50.0%
! GGGTGAAAAGTGGACTCCTA+TGG + chr4_1:45004935-45004954 None:intergenic 50.0%
CATTCCTGGGAATACATGGG+TGG + chr4_1:45004980-45004999 None:intergenic 50.0%
GGTAATTCTTCACCCAGACG+GGG - chr4_1:45005721-45005740 Msa0549790:intron 50.0%
! TTCGGTGGTTTGGACATGTC+TGG - chr4_1:45006070-45006089 Msa0549790:intron 50.0%
! ACTAGGTGAGGTTGGCTACA+AGG + chr4_1:45006267-45006286 None:intergenic 50.0%
TTGTAGCCAACCTCACCTAG+TGG - chr4_1:45006266-45006285 Msa0549790:CDS 50.0%
TGTAGCCAACCTCACCTAGT+GGG - chr4_1:45006267-45006286 Msa0549790:CDS 50.0%
CTTATCCCACTAGGTGAGGT+TGG + chr4_1:45006275-45006294 None:intergenic 50.0%
GTTGCAGAAACATCGCAGTG+AGG - chr4_1:45006497-45006516 Msa0549790:intron 50.0%
ACGCCAGCCCTTATGAGAAA+AGG - chr4_1:45007351-45007370 Msa0549790:intron 50.0%
CAGTAGTTGCCTTCCCATCA+AGG + chr4_1:45007558-45007577 None:intergenic 50.0%
CCGACTGCAATTGATGGAGT+CGG + chr4_1:45008342-45008361 None:intergenic 50.0%
CCGACTCCATCAATTGCAGT+CGG - chr4_1:45008339-45008358 Msa0549790:intron 50.0%
CTATGCACCTCTGCTTCTTG+AGG + chr4_1:45009077-45009096 None:intergenic 50.0%
!! ACAAAGGTGCTCCACTGACT+AGG + chr4_1:45009682-45009701 None:intergenic 50.0%
TGTGGCAAATCAGGGTTCGG+TGG + chr4_1:44998451-44998470 None:intergenic 55.0%
CCGTGTGGCAAATCAGGGTT+CGG + chr4_1:44998454-44998473 None:intergenic 55.0%
! CCGAACCCTGATTTGCCACA+CGG - chr4_1:44998451-44998470 Msa0549790:three_prime_UTR 55.0%
! AACCCTGATTTGCCACACGG+TGG - chr4_1:44998454-44998473 Msa0549790:three_prime_UTR 55.0%
CACCACCGTGTGGCAAATCA+GGG + chr4_1:44998459-44998478 None:intergenic 55.0%
ACACCACCGTGTGGCAAATC+AGG + chr4_1:44998460-44998479 None:intergenic 55.0%
CCAGAAACAACACCACCGTG+TGG + chr4_1:44998469-44998488 None:intergenic 55.0%
!! CCACACGGTGGTGTTGTTTC+TGG - chr4_1:44998466-44998485 Msa0549790:three_prime_UTR 55.0%
!! CACGGTGGTGTTGTTTCTGG+TGG - chr4_1:44998469-44998488 Msa0549790:three_prime_UTR 55.0%
! TGGTTTGGGCATGTAGCGAG+AGG - chr4_1:44999159-44999178 Msa0549790:intron 55.0%
AGAGACATGGGAGGCTCACA+AGG - chr4_1:44999558-44999577 Msa0549790:intron 55.0%
GAGACATGGGAGGCTCACAA+GGG - chr4_1:44999559-44999578 Msa0549790:intron 55.0%
AGACATGGGAGGCTCACAAG+GGG - chr4_1:44999560-44999579 Msa0549790:intron 55.0%
!! CCCACAGGAGAGCTTGTTAC+AGG - chr4_1:44999607-44999626 Msa0549790:intron 55.0%
CTGTTGGCCGGAATAAGGAG+TGG + chr4_1:45000664-45000683 None:intergenic 55.0%
CCCTAGATGCCTCACATGCA+CGG + chr4_1:45000948-45000967 None:intergenic 55.0%
! CCGTGCATGTGAGGCATCTA+GGG - chr4_1:45000945-45000964 Msa0549790:intron 55.0%
GATGTGCGAGAAGGTTGACC+TGG + chr4_1:45003412-45003431 None:intergenic 55.0%
GGTCAACCTTCTCGCACATC+TGG - chr4_1:45003412-45003431 Msa0549790:intron 55.0%
TTGCCCACCCATGTATTCCC+AGG - chr4_1:45004973-45004992 Msa0549790:intron 55.0%
GAAGTGCAATAGCCCCGTCT+GGG + chr4_1:45005736-45005755 None:intergenic 55.0%
TGAAGTGCAATAGCCCCGTC+TGG + chr4_1:45005737-45005756 None:intergenic 55.0%
CAATCGCTCGAGGTAGAGGA+AGG - chr4_1:45006144-45006163 Msa0549790:intron 55.0%
! GGGGTTACACCCTTTTGAGC+TGG + chr4_1:45007706-45007725 None:intergenic 55.0%
CTTAATGCAGACGGGTGGTG+AGG + chr4_1:45008027-45008046 None:intergenic 55.0%
! AGACAGTAAAGCGGTGGTGG+TGG - chr4_1:45008050-45008069 Msa0549790:CDS 55.0%
!! CTCATGAGCACCGAAGCACT+TGG - chr4_1:45008650-45008669 Msa0549790:CDS 55.0%
! TAGTGGGTCCCACCACTAAG+TGG - chr4_1:45009511-45009530 Msa0549790:intron 55.0%
AGTGGGTCCCACCACTAAGT+GGG - chr4_1:45009512-45009531 Msa0549790:intron 55.0%
! TAGTGGTGGGACCCACTTAG+TGG + chr4_1:45009526-45009545 None:intergenic 55.0%
GTATCTGTGACTGGGGGGAA+AGG - chr4_1:45010104-45010123 Msa0549790:CDS 55.0%
TTCCGCGAACGTCGTCTTCG+TGG + chr4_1:44998282-44998301 None:intergenic 60.0%
CGCGGAATAACCATCTGCGG+CGG - chr4_1:44998295-44998314 Msa0549790:three_prime_UTR 60.0%
! GCCGTGCATGTGAGGCATCT+AGG - chr4_1:45000944-45000963 Msa0549790:intron 60.0%
AAGGTCAGGGCAATCGCTCG+AGG - chr4_1:45006134-45006153 Msa0549790:intron 60.0%
AGGGCAATCGCTCGAGGTAG+AGG - chr4_1:45006140-45006159 Msa0549790:intron 60.0%
GGTGGGACCCACTTAGTGGT+GGG + chr4_1:45009522-45009541 None:intergenic 60.0%
TGGTGGGACCCACTTAGTGG+TGG + chr4_1:45009523-45009542 None:intergenic 60.0%
GGCCACGAAGACGACGTTCG+CGG - chr4_1:44998277-44998296 Msa0549790:three_prime_UTR 65.0%
ACCATCTGCGGCGGCGACAA+CGG - chr4_1:44998304-44998323 Msa0549790:three_prime_UTR 65.0%
ATCTGCGGCGGCGACAACGG+CGG - chr4_1:44998307-44998326 Msa0549790:three_prime_UTR 70.0%
GCCGTTGTCGCCGCCGCAGA+TGG + chr4_1:44998308-44998327 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44998022 45010434 44998022 ID=Msa0549790;Name=Msa0549790
chr4_1 mRNA 44998022 45010434 44998022 ID=Msa0549790-mRNA-1;Parent=Msa0549790;Name=Msa0549790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=210|0.94|1|1|1|1|20|483|744
chr4_1 exon 44998022 44998639 44998022 ID=Msa0549790-mRNA-1:exon:11824;Parent=Msa0549790-mRNA-1
chr4_1 exon 44999205 44999270 44999205 ID=Msa0549790-mRNA-1:exon:11823;Parent=Msa0549790-mRNA-1
chr4_1 exon 45000185 45000254 45000185 ID=Msa0549790-mRNA-1:exon:11822;Parent=Msa0549790-mRNA-1
chr4_1 exon 45001417 45001493 45001417 ID=Msa0549790-mRNA-1:exon:11821;Parent=Msa0549790-mRNA-1
chr4_1 exon 45001938 45002074 45001938 ID=Msa0549790-mRNA-1:exon:11820;Parent=Msa0549790-mRNA-1
chr4_1 exon 45002677 45002754 45002677 ID=Msa0549790-mRNA-1:exon:11819;Parent=Msa0549790-mRNA-1
chr4_1 exon 45002918 45003083 45002918 ID=Msa0549790-mRNA-1:exon:11818;Parent=Msa0549790-mRNA-1
chr4_1 exon 45003796 45003882 45003796 ID=Msa0549790-mRNA-1:exon:11817;Parent=Msa0549790-mRNA-1
chr4_1 exon 45004681 45004718 45004681 ID=Msa0549790-mRNA-1:exon:11816;Parent=Msa0549790-mRNA-1
chr4_1 exon 45005192 45005338 45005192 ID=Msa0549790-mRNA-1:exon:11815;Parent=Msa0549790-mRNA-1
chr4_1 exon 45006257 45006316 45006257 ID=Msa0549790-mRNA-1:exon:11814;Parent=Msa0549790-mRNA-1
chr4_1 exon 45006406 45006475 45006406 ID=Msa0549790-mRNA-1:exon:11813;Parent=Msa0549790-mRNA-1
chr4_1 exon 45006591 45006679 45006591 ID=Msa0549790-mRNA-1:exon:11812;Parent=Msa0549790-mRNA-1
chr4_1 exon 45006808 45006869 45006808 ID=Msa0549790-mRNA-1:exon:11811;Parent=Msa0549790-mRNA-1
chr4_1 exon 45007171 45007360 45007171 ID=Msa0549790-mRNA-1:exon:11810;Parent=Msa0549790-mRNA-1
chr4_1 exon 45007979 45008118 45007979 ID=Msa0549790-mRNA-1:exon:11809;Parent=Msa0549790-mRNA-1
chr4_1 exon 45008225 45008285 45008225 ID=Msa0549790-mRNA-1:exon:11808;Parent=Msa0549790-mRNA-1
chr4_1 exon 45008623 45008691 45008623 ID=Msa0549790-mRNA-1:exon:11807;Parent=Msa0549790-mRNA-1
chr4_1 exon 45008828 45008931 45008828 ID=Msa0549790-mRNA-1:exon:11806;Parent=Msa0549790-mRNA-1
chr4_1 exon 45009836 45010434 45009836 ID=Msa0549790-mRNA-1:exon:11805;Parent=Msa0549790-mRNA-1
chr4_1 five_prime_UTR 45010225 45010434 45010225 ID=Msa0549790-mRNA-1:five_prime_utr;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45009836 45010224 45009836 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45008828 45008931 45008828 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45008623 45008691 45008623 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45008225 45008285 45008225 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45007979 45008118 45007979 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45007171 45007360 45007171 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45006808 45006869 45006808 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45006591 45006679 45006591 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45006406 45006475 45006406 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45006257 45006316 45006257 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45005192 45005338 45005192 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45004681 45004718 45004681 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45003796 45003882 45003796 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45002918 45003083 45002918 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45002677 45002754 45002677 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45001938 45002074 45001938 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45001417 45001493 45001417 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 45000185 45000254 45000185 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 44999205 44999270 44999205 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 CDS 44998505 44998639 44998505 ID=Msa0549790-mRNA-1:cds;Parent=Msa0549790-mRNA-1
chr4_1 three_prime_UTR 44998022 44998504 44998022 ID=Msa0549790-mRNA-1:three_prime_utr;Parent=Msa0549790-mRNA-1
Gene Sequence

>Msa0549790

ATGGACATTGATTTCAAAGAATACCAATTACGCTGTGAACTTCACGGCCACGAAGACGACGTTCGCGGAATAACCATCTGCGGCGGCGACAACGGCGGAATAGCAACCTCATCGCGTGACAAAACGGTTAGGTTATGGACTCAAGATAATCGCAAATTCGTCTTGAACAAGGTTCTTGTAGGTCACACAAGTTTTGTGGGACCTATATCATGGATTCCACCGAACCCTGATTTGCCACACGGTGGTGTTGTTTCTGGTGGTATGGATACTCTTGTGTTGGTTTGGGACTTGAATAGTGGTGAGAAGGTGCAGAGTCTTAAAGGTCATCAATTGCAGGTTACTGGTATTGTGGTTGATGATGGTGATCTTGTTTCTTCTTCTATTGATTGTACTTTGAGGAGGTGGAGGAATGGGCAATGCATAGAGACATGGGAGGCTCACAAGGGGCCGATTCAAGCAGTTATAAAGCTACCCACAGGAGAGCTTGTTACAGGTTCAAGTGACACTACTTTAAAGACCTGGAAGGGCAAAACATGTTTACATACTTTTCAAGGACATGCAGATACTGTTCGTGGCTTGGCTGTGATGTCTGATCTTGGAATCCTATCTGCATCTCATGATGGTTCTCTGAGATTATGGGCAGTAAGTGGTGAAGTGTTAATGGAGATGGTTGGCCATACTGCAATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGCGAAGACCGTTTTGCAAAAATATGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGTGTTTGGGATACAAAATTTATGGAAAATGGGGATATTGTGACAGCATGTTCTGATGGAATTGTACGCATTTGGACTGTAAATCAGGATTATTTTGCTGACCAGCTAGAGCTTGATTTATACACTTCGCAACTTTCTCAATACAAGTCTAGTAGAAAGAGGGTTGGAGGATTGAAATTGGAGGAGTTACCAGGCTTGGATACACTGAAGATCCCAGGAACTTCTGATGGCCAAACAAAAGTTGTCAGAGAGGGAGATAACGGAGTTGCGTATGCATGGAACATGGCAGAACAGAAATGGGATAAAATTGGTGAAGTTGTTGATGGACCGGAAGAATCAAATCGCCCTCTCTTCGATGGTGTTCAGTATGATTATGTGTTTGATGTGGATATTGGAGATGGTATGCCTATCAGGAAGTTGCCATACAACCGATCAGATAATGCATATGATGCTGCTGATAAATGGCTACTCAAGGAGGGTCTTCCTCTTTCTTTTCGTGAGCAAGTCGTACAGTTCATACTTCAAAATACTGGACAAAAAGATATTACTTTTGATGCTTCATTTCGTGATCCGTACACCGGCTATATCTCTGCGAAGCCTACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATACTGCTCAATTTGATGGGATCCTTAAAAAAATTGCCGAGTTCAATAATGCCTTATTATCCGACCAGGGAAATCAGAAGTTGTCTTTGACCGAGTTGGATTTTACCAGACTGGATGCCATTGTTAAAACACTGAAAGATACATCATATTATCATTCCAGTAAATTTGCAGAATCTGAAATAGCCTTGCTACTGAATATGCTATCTTCATGGCCAACCACAATGATATTTCCTGTAATTGATATTACAAGGATGGTAATTCTTCACCCAGACGGGGCTATTGCACTTCAGAAGCATTTTGAATCTGAAAAAGACATTTTAATGGAAGTGATTAAGAAAGTTACCATAAACCCAACGATTCCTGCAAATCTGTTGACTAGTATTCGTGCTGTCACCAATCTCTTTAAGAATTCATGCTTCTACAACTGGTTGCAGAAACATCGCAGTGAGATTCTTGATGCTTTCTCAAGTTGTAGTTCATCTACAAACAAAAATTTGCAGTTATCCTACTCTACATTGATACTCAATTATGCAGTGCTATTGATTGAATCTAAGGATCAAGAAGGTCAATCTCATGTTCTATCAGCAGCACTTGAGATTGTCGAGGATGAAAACGTGGCACCTGATTCCAAATTTCGTGCTTTAGTTGCTGTTGGATCACTGATGCTTGAGGGTCTTGTGAAAAAAATAGCACTGGACTTTGATGTTTTGAGCATTGCAAAAGCAGCAAAGGGTTCTAAGGACTCCAAGATTGCTGAAGTAGGATCTGACATCGAGCTAGTATCAAAGCAAAGCTGA
Protein sequence

>Msa0549790

MDIDFKEYQLRCELHGHEDDVRGITICGGDNGGIATSSRDKTVRLWTQDNRKFVLNKVLVGHTSFVGPISWIPPNPDLPHGGVVSGGMDTLVLVWDLNSGEKVQSLKGHQLQVTGIVVDDGDLVSSSIDCTLRRWRNGQCIETWEAHKGPIQAVIKLPTGELVTGSSDTTLKTWKGKTCLHTFQGHADTVRGLAVMSDLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDTKFMENGDIVTACSDGIVRIWTVNQDYFADQLELDLYTSQLSQYKSSRKRVGGLKLEELPGLDTLKIPGTSDGQTKVVREGDNGVAYAWNMAEQKWDKIGEVVDGPEESNRPLFDGVQYDYVFDVDIGDGMPIRKLPYNRSDNAYDAADKWLLKEGLPLSFREQVVQFILQNTGQKDITFDASFRDPYTGYISAKPTFKHIPKKGMLVFDTAQFDGILKKIAEFNNALLSDQGNQKLSLTELDFTRLDAIVKTLKDTSYYHSSKFAESEIALLLNMLSSWPTTMIFPVIDITRMVILHPDGAIALQKHFESEKDILMEVIKKVTINPTIPANLLTSIRAVTNLFKNSCFYNWLQKHRSEILDAFSSCSSSTNKNLQLSYSTLILNYAVLLIESKDQEGQSHVLSAALEIVEDENVAPDSKFRALVAVGSLMLEGLVKKIALDFDVLSIAKAAKGSKDSKIAEVGSDIELVSKQS*