AlfalfaGEDB | Msa0658480

M. sativa cultivar zhongmu-4 / Msa0658480

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009506 GO:0009987 GO:0010467 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042802 GO:0042803 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044464 GO:0046983 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF06273.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0658480	XP_013446738.1	96.610	531	15	2	1	530	1	529	0.0	1007

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0658480	sp\|Q9LIN5\|IF4B1_ARATH	54.417	566	188	16	1	530	1	532	5.49e-149	440

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000940	Msa0658480	0.807486	4.937620e-50	-8.615850e-47
Msa0003220	Msa0658480	0.807258	5.520167e-50	-8.615850e-47
Msa0004540	Msa0658480	0.815848	7.492831e-52	-8.615850e-47
Msa0006880	Msa0658480	0.808457	3.068651e-50	-8.615850e-47
Msa0007850	Msa0658480	0.808086	3.680682e-50	-8.615850e-47
Msa0010770	Msa0658480	0.815212	1.037715e-51	-8.615850e-47
Msa0012940	Msa0658480	0.844599	6.841464e-59	-8.615850e-47
Msa0014830	Msa0658480	0.817492	3.206735e-52	-8.615850e-47
Msa0016740	Msa0658480	-0.814844	1.252264e-51	-8.615850e-47
Msa0029630	Msa0658480	0.824544	7.622725e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0658480	MtrunA17_Chr8g0381521	96.610	531	15	2	1	530	1	529	0.0	1007
Msa0658480	MtrunA17_Chr4g0037531	35.775	355	157	13	5	313	8	337	5.24e-31	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0658480	AT3G26400.1	54.417	566	188	16	1	530	1	532	5.58e-150	440
Msa0658480	AT1G13020.1	56.437	567	192	16	1	530	1	549	1.72e-137	409
Msa0658480	AT4G38710.2	42.025	326	130	15	28	312	36	343	6.35e-29	120
Msa0658480	AT4G38710.1	42.331	326	129	15	28	312	36	343	6.76e-29	119

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Find 256 sgRNAs with CRISPR-Local

Find 623 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGAGATTAAAGAG+AGG	0.591664	4_3:+68570913	None:intergenic
AAAATGTGGTTGTTGAGCCG+GGG	0.656326	4_3:+68570791	None:intergenic
AAAATTGAAGAGAATGAGAT+TGG	0.361009	4_3:+68570743	None:intergenic
AACATGCAAAAGATAAAGAA+GGG	0.575926	4_3:+68570841	None:intergenic
AACGTAGAGCGCCAAGTTCT+AGG	0.393943	4_3:-68570287	Msa0658480:CDS
AAGACAATTTCAAGGTAGCA+AGG	0.599199	4_3:-68564508	Msa0658480:CDS
AAGAGAAACCACCGCCAAGA+CGG	0.628351	4_3:+68570409	None:intergenic
AAGATGGTGCGCTGAAACCG+AGG	0.507806	4_3:-68569702	Msa0658480:CDS
AAGCAAAACCTCCCTGGGTT+TGG	0.412864	4_3:+68569654	None:intergenic
AATCAGAATCAGAATCGATA+TGG	0.439413	4_3:-68570174	Msa0658480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAACATGCAAAAGATAAAGA+AGG	+	chr4_3:68564033-68564052	None:intergenic	30.0%
GACATCTTCTTATTCTTCTT+CGG	+	chr4_3:68564309-68564328	None:intergenic	30.0%
AATCAGAATCAGAATCGATA+TGG	-	chr4_3:68564696-68564715	Msa0658480:CDS	30.0%
GATCAGAATTAACCTATCAA+CGG	+	chr4_3:68565294-68565313	None:intergenic	30.0%
AATAGTATAGGTGAATCAGA+TGG	-	chr4_3:68565413-68565432	Msa0658480:intron	30.0%
ATAGTATAGGTGAATCAGAT+GGG	-	chr4_3:68565414-68565433	Msa0658480:intron	30.0%
TGATGGTTTCTTATTCTATC+AGG	-	chr4_3:68565520-68565539	Msa0658480:intron	30.0%
GATGGTTTCTTATTCTATCA+GGG	-	chr4_3:68565521-68565540	Msa0658480:intron	30.0%
ATAGTGGTTAGCAAAACATA+AGG	-	chr4_3:68565639-68565658	Msa0658480:intron	30.0%
GTGTTTAATAGCTCAATAAC+TGG	+	chr4_3:68565704-68565723	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	68563883	68571009	68563883	ID=Msa0658480;Name=Msa0658480
chr4_3	mRNA	68563883	68571009	68563883	ID=Msa0658480-mRNA-1;Parent=Msa0658480;Name=Msa0658480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=282\|1\|1\|1\|0.5\|0.66\|3\|344\|530
chr4_3	exon	68563883	68564251	68563883	ID=Msa0658480-mRNA-1:exon:19898;Parent=Msa0658480-mRNA-1
chr4_3	exon	68564471	68564902	68564471	ID=Msa0658480-mRNA-1:exon:19897;Parent=Msa0658480-mRNA-1
chr4_3	exon	68569592	68571009	68569592	ID=Msa0658480-mRNA-1:exon:19896;Parent=Msa0658480-mRNA-1
chr4_3	five_prime_UTR	68570728	68571009	68570728	ID=Msa0658480-mRNA-1:five_prime_utr;Parent=Msa0658480-mRNA-1
chr4_3	CDS	68569592	68570727	68569592	ID=Msa0658480-mRNA-1:cds;Parent=Msa0658480-mRNA-1
chr4_3	CDS	68564471	68564902	68564471	ID=Msa0658480-mRNA-1:cds;Parent=Msa0658480-mRNA-1
chr4_3	CDS	68564227	68564251	68564227	ID=Msa0658480-mRNA-1:cds;Parent=Msa0658480-mRNA-1
chr4_3	three_prime_UTR	68563883	68564226	68563883	ID=Msa0658480-mRNA-1:three_prime_utr;Parent=Msa0658480-mRNA-1

Gene Sequence

>Msa0658480

ATGTCGAAACCCTGGGGCAATATCGGAGCTTGGGCGGCTGATTCGGAGGCCGCCGAAGCCGAAGAACGCGAAGCGGCAGCTAAGTCAGCGGCCGCTCCGTCAGACAACTTCCCTAGTCTCAAGGAAGCCGTAACTACCAAACCGAAGAAGAATAAGAAGATGTCGCTCTCTGAATTCACACGTGGAGGTTACTCCTCCGGTGGTGGCGCCGCTGATATCCCTCGTTTGACACCGGAGGAGATGCTTCGTCTTCCTACCGGTCCTAAGGAACGTTCTGCTGAGGAAATGCAGTTTAACCGTCTTGGCGGTGGTTTCTCTTCCTATGGCGGTGGTGGTGGTCGTGGAAGGGATCGTGAGGGAGCCTCTGGTGATGGTTCTTGGGGCGCTGGAAGAAGATCTTATGGTGGATTTGATGATGAACGTAGAGCGCCAAGTTCTAGGGTTTCGGAATTTGAACCGTCCAGGGCTGACGAGGTGGATAATTGGGCGTCGGTGAAGAAGTCGCTCCCGTCGTTTGATTCCGGTCGTCAGAATCAGAATCAGAATCGATATGGTGGTAGTGGTGGTGGTGGTGGTTTTGGTGGTGGTGAATCTAAGGCAGATGGAGTGGATAATTGGGCGGTTGGTAAGAAACCGCTTCCTGTTAGATCTTATGGTGGTTCTCGTGATTCTGGAATGGAACCAGATCGGTGGGCCAGAGGTTCTGCTGTGGAACCAGATCGGTGGGCTAGAGGAGCGCCGCGTGATACGGAGCAGCAACAGCAGCGTCCTAGGTTGGTTTTGGATCCAAGGAAAGGTGATGGTTCTGTCAATGAATCTCCGGTGGTGAAGACGAATAAGCCGAATCCATTTGGTGCAGCGAGGCCTAGGGAGGAAGTGTTGGCGGAGAAAGGATATGATTGGAAGAAGCTGGATTCTGAGATTGAGGCGAAAAAGACGAGCAGGCCTACAAGTTCACATTCCAGCAGGCCTTCAAGTGCTCAATCCAATCGCTCCGAGGGTCAAGATGGTGCGCTGAAACCGAGGCCAAAAGTGAATCCTTTTGGAGATGCCAAACCCAGGGAGGTTTTGCTTAGCGAGCGTGGTAAGGATTGGCGGAAGATGGATCTTGAATTGGAGCATCGCGCCGTTGATAGGCCTGAGACCATGGAGGAAAAATTATTAAAAGAAGAGATTGATAATTTGAAGAAGCAACTTGAGAAGGAGCCTACAGTTAATTCAAATGAGGAATCTGCGGATGGTGCTGGTGGAGACCAAACTGGTACACGTGCAATGCTACTAGAGAAAGAAAGGGAGCTGGAACTACTTATCCGTGATTTGGATGATAAAGTTCGTTTTGGGCAGAAAGCTGTTGAAAGGCCTGGTTCGTCAGCAGGAAAGACTGCTGGTTTTTCTGATAGGCCACCATCTCGGTCTGGCTCATTTGAGGATTCAAGAAGTGTGGATTTTACGGACCGACCTCGATCCCGTGGCACAGGTGATATGTCGATGCGCCCTACTGATGACAGAAGACAATTTCAAGGTAGCAAGGATAGGGGGTGGTTTTCGAATAGCAGAGATTTGAATAGGTCAAGTTCCAAAGAGAGATGGTGA

Protein sequence

>Msa0658480

MSKPWGNIGAWAADSEAAEAEEREAAAKSAAAPSDNFPSLKEAVTTKPKKNKKMSLSEFTRGGYSSGGGAADIPRLTPEEMLRLPTGPKERSAEEMQFNRLGGGFSSYGGGGGRGRDREGASGDGSWGAGRRSYGGFDDERRAPSSRVSEFEPSRADEVDNWASVKKSLPSFDSGRQNQNQNRYGGSGGGGGFGGGESKADGVDNWAVGKKPLPVRSYGGSRDSGMEPDRWARGSAVEPDRWARGAPRDTEQQQQRPRLVLDPRKGDGSVNESPVVKTNKPNPFGAARPREEVLAEKGYDWKKLDSEIEAKKTSRPTSSHSSRPSSAQSNRSEGQDGALKPRPKVNPFGDAKPREVLLSERGKDWRKMDLELEHRAVDRPETMEEKLLKEEIDNLKKQLEKEPTVNSNEESADGAGGDQTGTRAMLLEKERELELLIRDLDDKVRFGQKAVERPGSSAGKTAGFSDRPPSRSGSFEDSRSVDFTDRPRSRGTGDMSMRPTDDRRQFQGSKDRGWFSNSRDLNRSSSKERW*