Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286400 | sp|P40590|RL34_PEA | 98.319 | 119 | 2 | 0 | 1 | 119 | 1 | 119 | 2.57e-79 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286400 | A0A2K3P8V8 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 1.62e-78 | 236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108750 | Msa1286400 | 0.813367 | 2.652702e-51 | -8.615850e-47 |
| Msa0681090 | Msa1286400 | 0.802178 | 6.344978e-49 | -8.615850e-47 |
| Msa0216200 | Msa1286400 | 0.806773 | 6.990333e-50 | -8.615850e-47 |
| Msa0377600 | Msa1286400 | 0.826441 | 2.709001e-54 | -8.615850e-47 |
| Msa0929790 | Msa1286400 | 0.811144 | 8.106981e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286400 | MtrunA17_Chr8g0361721 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 3.12e-82 | 236 |
| Msa1286400 | MtrunA17_Chr7g0217171 | 98.333 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 8.58e-82 | 235 |
| Msa1286400 | MtrunA17_Chr5g0417101 | 97.500 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 3.25e-80 | 231 |
| Msa1286400 | MtrunA17_Chr7g0217651 | 75.510 | 49 | 12 | 0 | 1 | 49 | 1 | 49 | 2.23e-21 | 80.1 |
| Msa1286400 | MtrunA17_Chr8g0343321 | 76.364 | 55 | 12 | 1 | 66 | 119 | 66 | 120 | 1.64e-20 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286400 | AT1G26880.1 | 91.667 | 120 | 10 | 0 | 1 | 120 | 1 | 120 | 1.82e-75 | 219 |
| Msa1286400 | AT1G69620.1 | 91.597 | 119 | 10 | 0 | 1 | 119 | 1 | 119 | 2.15e-74 | 216 |
| Msa1286400 | AT3G28900.1 | 87.500 | 120 | 15 | 0 | 1 | 120 | 1 | 120 | 3.50e-72 | 211 |
| Msa1286400 | AT1G26880.2 | 91.304 | 92 | 8 | 0 | 1 | 92 | 1 | 92 | 7.83e-58 | 174 |
Find 43 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTCTCTTTCCAGTAAC+AGG | 0.236829 | 8_3:-34251550 | None:intergenic |
| TTCACAGTCCTCCTGTTTCT+AGG | 0.273382 | 8_3:-34254008 | None:intergenic |
| TGGTCCACTAGCTCTCTTCT+TGG | 0.301308 | 8_3:-34251521 | None:intergenic |
| GGACCAAAATGCCCTGTTAC+TGG | 0.307357 | 8_3:+34251538 | Msa1286400:CDS |
| AACCCTATGTTGGTTGGATT+TGG | 0.320720 | 8_3:-34251362 | None:intergenic |
| TAGAATCATCCGTGCTTTCT+TGG | 0.341279 | 8_3:+34254196 | Msa1286400:intron |
| TTTCCAGTAACAGGGCATTT+TGG | 0.356509 | 8_3:-34251541 | None:intergenic |
| AAAGGAAAAGCAAGCTTTGA+AGG | 0.424350 | 8_3:+34254265 | Msa1286400:CDS |
| CCTCCTGTTTCTAGGTAGCC+TGG | 0.424353 | 8_3:-34254000 | None:intergenic |
| CTGGAGGTGCTGTTAGAGAA+AGG | 0.447721 | 8_3:+34254054 | Msa1286400:CDS |
| GATCCAGGCTACCTAGAAAC+AGG | 0.450559 | 8_3:+34253997 | Msa1286400:CDS |
| GTTACTGGAAAGAGAATTCA+AGG | 0.455575 | 8_3:+34251553 | Msa1286400:CDS |
| CCTATGTTGGTTGGATTTGG+TGG | 0.458968 | 8_3:-34251359 | None:intergenic |
| CCACCAAATCCAACCAACAT+AGG | 0.484896 | 8_3:+34251359 | Msa1286400:CDS |
| GTAGCTGTGGCGCCTGCGGT+AGG | 0.491000 | 8_3:-34251335 | None:intergenic |
| TTCTTCTTTCAGCGACGAGA+CGG | 0.502438 | 8_3:-34251280 | None:intergenic |
| TTTGACAACCCTATGTTGGT+TGG | 0.518215 | 8_3:-34251368 | None:intergenic |
| TTGTGCTTCCCAAAAGCTAC+TGG | 0.519830 | 8_3:-34254622 | None:intergenic |
| CCACCGAGTACAAGAGATCC+AGG | 0.525177 | 8_3:+34253982 | Msa1286400:CDS |
| CTGGATCTCTTGTACTCGGT+GGG | 0.533931 | 8_3:-34253981 | None:intergenic |
| AGAAGAAGAAAATGGTTCAG+AGG | 0.548716 | 8_3:+34251308 | Msa1286400:exon |
| AGGACTGTGAATCGTGCCTA+TGG | 0.552813 | 8_3:+34254020 | Msa1286400:CDS |
| CACCAAATCCAACCAACATA+GGG | 0.555718 | 8_3:+34251360 | Msa1286400:CDS |
| TACTCGGTGGGTCTTAGATG+TGG | 0.556789 | 8_3:-34253969 | None:intergenic |
| CGACGAGACGGAGACGGAGA+AGG | 0.567607 | 8_3:-34251268 | None:intergenic |
| TTCAGAGGCTTACCTACCGC+AGG | 0.575371 | 8_3:+34251323 | Msa1286400:CDS |
| ACAACCAAGAAGAGAGCTAG+TGG | 0.581836 | 8_3:+34251517 | Msa1286400:CDS |
| CCTGGATCTCTTGTACTCGG+TGG | 0.582178 | 8_3:-34253982 | None:intergenic |
| TAGCCTGGATCTCTTGTACT+CGG | 0.586947 | 8_3:-34253985 | None:intergenic |
| ATTTCAGGCTACAAAACGAA+CGG | 0.587848 | 8_3:-34254583 | None:intergenic |
| TTTCAGCGACGAGACGGAGA+CGG | 0.588001 | 8_3:-34251274 | None:intergenic |
| CATAGGGTTGTCAAAACACC+CGG | 0.588675 | 8_3:+34251376 | Msa1286400:CDS |
| GCTCTTCAACCAAGAAAGCA+CGG | 0.590956 | 8_3:-34254205 | None:intergenic |
| TGGATTTGGTGGCGTAGCTG+TGG | 0.606099 | 8_3:-34251348 | None:intergenic |
| GAATTCTCTTTCCAGTAACA+GGG | 0.607378 | 8_3:-34251549 | None:intergenic |
| ACTGTGAATCGTGCCTATGG+TGG | 0.611220 | 8_3:+34254023 | Msa1286400:CDS |
| TGGCGTAGCTGTGGCGCCTG+CGG | 0.611290 | 8_3:-34251339 | None:intergenic |
| CTTGAAGATCCAAAAGACAA+AGG | 0.616073 | 8_3:+34254247 | Msa1286400:CDS |
| TCCAGATAAAACTCCACCAT+AGG | 0.634243 | 8_3:-34254036 | None:intergenic |
| CAAACAAAACTGTATCACAA+TGG | 0.639917 | 8_3:-34254441 | None:intergenic |
| TACTGGAAAGAGAATTCAAG+GGG | 0.654631 | 8_3:+34251555 | Msa1286400:CDS |
| TTACTGGAAAGAGAATTCAA+GGG | 0.686108 | 8_3:+34251554 | Msa1286400:CDS |
| CCAGGCTACCTAGAAACAGG+AGG | 0.698083 | 8_3:+34254000 | Msa1286400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTACGTAATTTAAAAA+AGG | + | chr8_3:34252099-34252118 | Msa1286400:intron | 10.0% |
| !!! | AATTTTTTAATTTAACAATG+AGG | + | chr8_3:34252283-34252302 | Msa1286400:intron | 10.0% |
| !! | TAAATAATTACATGTATTAT+AGG | + | chr8_3:34253345-34253364 | Msa1286400:intron | 10.0% |
| !! | TTATACTCTTAAAAAAAATC+AGG | - | chr8_3:34252503-34252522 | None:intergenic | 15.0% |
| !! | AAAGCAATAAAACTTAAAAA+GGG | - | chr8_3:34252639-34252658 | None:intergenic | 15.0% |
| !!! | TTTTTAAGTTTTATTGCTTT+GGG | + | chr8_3:34252639-34252658 | Msa1286400:intron | 15.0% |
| !! | TAGCATATATTTATTTATCA+AGG | + | chr8_3:34253197-34253216 | Msa1286400:intron | 15.0% |
| !! | AATACACTTAAATAAAACAA+GGG | - | chr8_3:34253809-34253828 | None:intergenic | 15.0% |
| !! | AAATACACTTAAATAAAACA+AGG | - | chr8_3:34253810-34253829 | None:intergenic | 15.0% |
| !! | AGTTTATTGTAATAGTCTAA+GGG | + | chr8_3:34251900-34251919 | Msa1286400:intron | 20.0% |
| !!! | TTTTAATTTAACAATGAGGT+TGG | + | chr8_3:34252287-34252306 | Msa1286400:intron | 20.0% |
| !! | CAAAGCAATAAAACTTAAAA+AGG | - | chr8_3:34252640-34252659 | None:intergenic | 20.0% |
| !!! | CTTTTTAAGTTTTATTGCTT+TGG | + | chr8_3:34252638-34252657 | Msa1286400:intron | 20.0% |
| !! | AATATTCATTCCAAAAGAAA+AGG | + | chr8_3:34252823-34252842 | Msa1286400:intron | 20.0% |
| !! | TTATTTATCAAGGTTGTTAA+AGG | + | chr8_3:34253207-34253226 | Msa1286400:intron | 20.0% |
| !! | TAGAAAAATAACAGTAAAAC+AGG | + | chr8_3:34253285-34253304 | Msa1286400:intron | 20.0% |
| !! | ATTACATGTATTATAGGATA+AGG | + | chr8_3:34253351-34253370 | Msa1286400:intron | 20.0% |
| !!! | ATTGAAAAACTTTTCATTTC+AGG | - | chr8_3:34254601-34254620 | None:intergenic | 20.0% |
| !!! | TAATTTGATTTGTTGAATGC+AGG | + | chr8_3:34251475-34251494 | Msa1286400:intron | 25.0% |
| !!! | AACCTCATTCTAAAACATTA+CGG | - | chr8_3:34251743-34251762 | None:intergenic | 25.0% |
| ! | AATACATTTAGTATAGTAGC+TGG | + | chr8_3:34251859-34251878 | Msa1286400:intron | 25.0% |
| ! | GAGTTTATTGTAATAGTCTA+AGG | + | chr8_3:34251899-34251918 | Msa1286400:intron | 25.0% |
| ! | AAATATCATTCTTGTGTGTT+TGG | - | chr8_3:34252156-34252175 | None:intergenic | 25.0% |
| !! | AATGATGTTTCGTAAACTTT+TGG | + | chr8_3:34252338-34252357 | Msa1286400:intron | 25.0% |
| !! | ATGATGTTTCGTAAACTTTT+GGG | + | chr8_3:34252339-34252358 | Msa1286400:intron | 25.0% |
| ! | ACATAACATTACCCTTAAAA+GGG | - | chr8_3:34252539-34252558 | None:intergenic | 25.0% |
| ! | AACATAACATTACCCTTAAA+AGG | - | chr8_3:34252540-34252559 | None:intergenic | 25.0% |
| ! | AACAGAATTGAACTAAAAGT+AGG | - | chr8_3:34252605-34252624 | None:intergenic | 25.0% |
| !!! | TACTAGTTTTCCTTTTCTTT+TGG | - | chr8_3:34252836-34252855 | None:intergenic | 25.0% |
| ! | CAAAATACAATTTCAAAGAC+AGG | - | chr8_3:34252904-34252923 | None:intergenic | 25.0% |
| !!! | GTCTTTGAAATTGTATTTTG+TGG | + | chr8_3:34252904-34252923 | Msa1286400:intron | 25.0% |
| !!! | TTTTTTTTTGGTACAATGTC+TGG | - | chr8_3:34253063-34253082 | None:intergenic | 25.0% |
| ! | ATTTATGTGATTACTATGTC+TGG | - | chr8_3:34253099-34253118 | None:intergenic | 25.0% |
| ! | TAAGTAAGAACTAAGATGAA+TGG | - | chr8_3:34253267-34253286 | None:intergenic | 25.0% |
| ! | ATAAGTACATGTCAAACTTT+GGG | - | chr8_3:34253427-34253446 | None:intergenic | 25.0% |
| ! | AATAAGTACATGTCAAACTT+TGG | - | chr8_3:34253428-34253447 | None:intergenic | 25.0% |
| ! | AGGTTATTAGGTTAAAAACA+GGG | - | chr8_3:34253604-34253623 | None:intergenic | 25.0% |
| ! | TAGGTTATTAGGTTAAAAAC+AGG | - | chr8_3:34253605-34253624 | None:intergenic | 25.0% |
| !! | TGACTTAAAATTTCCACTTT+TGG | - | chr8_3:34253678-34253697 | None:intergenic | 25.0% |
| !! | TTATGCTACATTGATACTTT+TGG | + | chr8_3:34253828-34253847 | Msa1286400:intron | 25.0% |
| !! | TATGCTACATTGATACTTTT+GGG | + | chr8_3:34253829-34253848 | Msa1286400:intron | 25.0% |
| !!! | TTTGTTCTGCTTAACTTTTT+TGG | + | chr8_3:34254077-34254096 | Msa1286400:intron | 25.0% |
| !! | AAACGAGATAAAGATCTTTT+TGG | + | chr8_3:34254301-34254320 | Msa1286400:three_prime_UTR | 25.0% |
| GAAGAAGAAGAAGAAGAAAA+TGG | + | chr8_3:34251300-34251319 | Msa1286400:exon | 30.0% | |
| TTACTGGAAAGAGAATTCAA+GGG | + | chr8_3:34251554-34251573 | Msa1286400:CDS | 30.0% | |
| ! | TTCTTGTGTGTTTGGTTTAA+GGG | - | chr8_3:34252148-34252167 | None:intergenic | 30.0% |
| ! | ATTCTTGTGTGTTTGGTTTA+AGG | - | chr8_3:34252149-34252168 | None:intergenic | 30.0% |
| AAAATATCCAGTTATGTCGT+TGG | + | chr8_3:34252191-34252210 | Msa1286400:intron | 30.0% | |
| ! | TAACAGCAAACATTTTGCAA+TGG | - | chr8_3:34252252-34252271 | None:intergenic | 30.0% |
| !!! | TTTTGGGATCCTGTATATAT+AGG | + | chr8_3:34252355-34252374 | Msa1286400:intron | 30.0% |
| !! | GATTTTAGTCATTGCAATAG+CGG | + | chr8_3:34252685-34252704 | Msa1286400:intron | 30.0% |
| AAGAAAAGGAAAACTAGTAC+TGG | + | chr8_3:34252837-34252856 | Msa1286400:intron | 30.0% | |
| ! | AATTGCTGTCATTTGTATGT+CGG | + | chr8_3:34253017-34253036 | Msa1286400:intron | 30.0% |
| ACGACTAGAATAATGAGATT+TGG | + | chr8_3:34253140-34253159 | Msa1286400:intron | 30.0% | |
| TATCTAACTGTATCCAGAAA+AGG | + | chr8_3:34253513-34253532 | Msa1286400:intron | 30.0% | |
| GTTAAAAACAGGGGAATTAA+AGG | - | chr8_3:34253594-34253613 | None:intergenic | 30.0% | |
| GGTTATTAGGTTAAAAACAG+GGG | - | chr8_3:34253603-34253622 | None:intergenic | 30.0% | |
| ACCTAATAACCTAACTTAGT+TGG | + | chr8_3:34253612-34253631 | Msa1286400:intron | 30.0% | |
| CCTAATAACCTAACTTAGTT+GGG | + | chr8_3:34253613-34253632 | Msa1286400:intron | 30.0% | |
| !! | TTATTGCTTTTGCATTACTC+AGG | + | chr8_3:34253858-34253877 | Msa1286400:intron | 30.0% |
| !!! | TCGTTAGTTTTGTGCTTATT+TGG | + | chr8_3:34254380-34254399 | Msa1286400:three_prime_UTR | 30.0% |
| CAAACAAAACTGTATCACAA+TGG | - | chr8_3:34254444-34254463 | None:intergenic | 30.0% | |
| ! | TTGTCTCAATTTTCTCTTGA+TGG | + | chr8_3:34254461-34254480 | Msa1286400:three_prime_UTR | 30.0% |
| CAGTAAAATTGCAGTAAGAA+TGG | - | chr8_3:34254554-34254573 | None:intergenic | 30.0% | |
| ! | TACAAAACGAACGGTATTTT+CGG | - | chr8_3:34254577-34254596 | None:intergenic | 30.0% |
| ! | TTTTCAATACCAGTAGCTTT+TGG | + | chr8_3:34254613-34254632 | Msa1286400:three_prime_UTR | 30.0% |
| ! | TTTCAATACCAGTAGCTTTT+GGG | + | chr8_3:34254614-34254633 | Msa1286400:three_prime_UTR | 30.0% |
| AGAAGAAGAAAATGGTTCAG+AGG | + | chr8_3:34251308-34251327 | Msa1286400:exon | 35.0% | |
| ! | AAAGGTTAGTTACCACTTAC+CGG | - | chr8_3:34251398-34251417 | None:intergenic | 35.0% |
| CAACAAAGTGAAGAGAAGAA+AGG | - | chr8_3:34251416-34251435 | None:intergenic | 35.0% | |
| !! | TTTGATTTGTTGAATGCAGG+TGG | + | chr8_3:34251478-34251497 | Msa1286400:intron | 35.0% |
| GAATTCTCTTTCCAGTAACA+GGG | - | chr8_3:34251552-34251571 | None:intergenic | 35.0% | |
| TGAATTCTCTTTCCAGTAAC+AGG | - | chr8_3:34251553-34251572 | None:intergenic | 35.0% | |
| GTTACTGGAAAGAGAATTCA+AGG | + | chr8_3:34251553-34251572 | Msa1286400:CDS | 35.0% | |
| TACTGGAAAGAGAATTCAAG+GGG | + | chr8_3:34251555-34251574 | Msa1286400:CDS | 35.0% | |
| !!! | TGCCGTAATGTTTTAGAATG+AGG | + | chr8_3:34251738-34251757 | Msa1286400:intron | 35.0% |
| GTAATATGACGAGTTCTCAT+TGG | + | chr8_3:34251780-34251799 | Msa1286400:intron | 35.0% | |
| ! | TAATAGTCTAAGGGTGTGTT+TGG | + | chr8_3:34251909-34251928 | Msa1286400:intron | 35.0% |
| TTTGGATTGAGGGTTTAAGA+GGG | + | chr8_3:34251927-34251946 | Msa1286400:intron | 35.0% | |
| ! | TTTGGTTTAAGGGTTTAGCT+GGG | - | chr8_3:34252138-34252157 | None:intergenic | 35.0% |
| AATCAAACCAACGACATAAC+TGG | - | chr8_3:34252201-34252220 | None:intergenic | 35.0% | |
| ! | TAGGACTAAGCTTTTGAACA+AGG | - | chr8_3:34252389-34252408 | None:intergenic | 35.0% |
| GTTAATCGCGGAAAAATTGT+CGG | + | chr8_3:34252432-34252451 | Msa1286400:intron | 35.0% | |
| !! | CCTAATAGTGGATGCTATAA+CGG | - | chr8_3:34252464-34252483 | None:intergenic | 35.0% |
| CGTTATAGCATCCACTATTA+GGG | + | chr8_3:34252462-34252481 | Msa1286400:intron | 35.0% | |
| !! | TGTCATTTCGAACCCTTTTA+AGG | + | chr8_3:34252524-34252543 | Msa1286400:intron | 35.0% |
| ! | GTCATTTCGAACCCTTTTAA+GGG | + | chr8_3:34252525-34252544 | Msa1286400:intron | 35.0% |
| TATACCGCTATAGCATGTTA+GGG | + | chr8_3:34252724-34252743 | Msa1286400:intron | 35.0% | |
| ! | AAAACTAGTACTGGATGTGA+TGG | + | chr8_3:34252846-34252865 | Msa1286400:intron | 35.0% |
| ! | GAAATTGTATTTTGTGGAGC+TGG | + | chr8_3:34252910-34252929 | Msa1286400:intron | 35.0% |
| AGACCAGCTATAATAAAGTG+TGG | - | chr8_3:34252992-34253011 | None:intergenic | 35.0% | |
| AAGTGCATCAGCAAATCATA+CGG | - | chr8_3:34253177-34253196 | None:intergenic | 35.0% | |
| !! | ATGCATAACGGACTTATACA+AGG | - | chr8_3:34253560-34253579 | None:intergenic | 35.0% |
| CCCAACTAAGTTAGGTTATT+AGG | - | chr8_3:34253616-34253635 | None:intergenic | 35.0% | |
| TAACATGACCCAACTAAGTT+AGG | - | chr8_3:34253624-34253643 | None:intergenic | 35.0% | |
| ! | GGCGCGTTTTTAATAGTAAT+TGG | + | chr8_3:34253879-34253898 | Msa1286400:intron | 35.0% |
| ATTGGTGAAATACGTAACAG+TGG | + | chr8_3:34253897-34253916 | Msa1286400:intron | 35.0% | |
| CTTGAAGATCCAAAAGACAA+AGG | + | chr8_3:34254247-34254266 | Msa1286400:CDS | 35.0% | |
| !! | CTTGCTTTTCCTTTGTCTTT+TGG | - | chr8_3:34254259-34254278 | None:intergenic | 35.0% |
| ! | AAAGGAAAAGCAAGCTTTGA+AGG | + | chr8_3:34254265-34254284 | Msa1286400:CDS | 35.0% |
| ! | CGAGATAAAGATCTTTTTGG+AGG | + | chr8_3:34254304-34254323 | Msa1286400:three_prime_UTR | 35.0% |
| !! | GATCTTTTTGGAGGAGTTTT+AGG | + | chr8_3:34254313-34254332 | Msa1286400:three_prime_UTR | 35.0% |
| ATTTCAGGCTACAAAACGAA+CGG | - | chr8_3:34254586-34254605 | None:intergenic | 35.0% | |
| CACCAAATCCAACCAACATA+GGG | + | chr8_3:34251360-34251379 | Msa1286400:CDS | 40.0% | |
| ! | AACCCTATGTTGGTTGGATT+TGG | - | chr8_3:34251365-34251384 | None:intergenic | 40.0% |
| TTTGACAACCCTATGTTGGT+TGG | - | chr8_3:34251371-34251390 | None:intergenic | 40.0% | |
| !!! | GTGTTTTGACAACCCTATGT+TGG | - | chr8_3:34251375-34251394 | None:intergenic | 40.0% |
| ! | AAGGTTAGTTACCACTTACC+GGG | - | chr8_3:34251397-34251416 | None:intergenic | 40.0% |
| ! | TTGTTGTCGTTTACTAAGCG+AGG | + | chr8_3:34251430-34251449 | Msa1286400:intron | 40.0% |
| !! | TTTCCAGTAACAGGGCATTT+TGG | - | chr8_3:34251544-34251563 | None:intergenic | 40.0% |
| TGTTCGAAGATATGCTCTGA+TGG | + | chr8_3:34251667-34251686 | Msa1286400:intron | 40.0% | |
| !! | AGGTTCGAAGTGTTGTTATG+TGG | + | chr8_3:34251758-34251777 | Msa1286400:intron | 40.0% |
| GACGAGTTCTCATTGGATTT+CGG | + | chr8_3:34251787-34251806 | Msa1286400:intron | 40.0% | |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | + | chr8_3:34251917-34251936 | Msa1286400:intron | 40.0% |
| GTTTGGATTGAGGGTTTAAG+AGG | + | chr8_3:34251926-34251945 | Msa1286400:intron | 40.0% | |
| TTGGATTGAGGGTTTAAGAG+GGG | + | chr8_3:34251928-34251947 | Msa1286400:intron | 40.0% | |
| TTGGTTTAAGGGTTTAGCTG+GGG | - | chr8_3:34252137-34252156 | None:intergenic | 40.0% | |
| ! | GTTTGGTTTAAGGGTTTAGC+TGG | - | chr8_3:34252139-34252158 | None:intergenic | 40.0% |
| GCGGAAAAGCCTATATATAC+AGG | - | chr8_3:34252367-34252386 | None:intergenic | 40.0% | |
| ! | GACTAAGCTTTTGAACAAGG+CGG | - | chr8_3:34252386-34252405 | None:intergenic | 40.0% |
| ! | TAGTGGATGCTATAACGGTT+TGG | - | chr8_3:34252459-34252478 | None:intergenic | 40.0% |
| CCGTTATAGCATCCACTATT+AGG | + | chr8_3:34252461-34252480 | Msa1286400:intron | 40.0% | |
| CATCCACTATTAGGGTTTCA+GGG | + | chr8_3:34252470-34252489 | Msa1286400:intron | 40.0% | |
| ATAGCGGTATAGCAGATAGA+AGG | - | chr8_3:34252715-34252734 | None:intergenic | 40.0% | |
| CTATACCGCTATAGCATGTT+AGG | + | chr8_3:34252723-34252742 | Msa1286400:intron | 40.0% | |
| GTGCCACACTTTATTATAGC+TGG | + | chr8_3:34252986-34253005 | Msa1286400:intron | 40.0% | |
| TGTTAGCAATTGTCACCTCA+AGG | - | chr8_3:34253243-34253262 | None:intergenic | 40.0% | |
| CTCTAAACATCATGCAGCTT+AGG | - | chr8_3:34253403-34253422 | None:intergenic | 40.0% | |
| ! | ACTTATACAAGGCACCATGA+GGG | - | chr8_3:34253549-34253568 | None:intergenic | 40.0% |
| ! | GCACTAAAAGGCATGCATAA+CGG | - | chr8_3:34253572-34253591 | None:intergenic | 40.0% |
| !! | GGGGAATTAAAGGCACTAAA+AGG | - | chr8_3:34253584-34253603 | None:intergenic | 40.0% |
| TCCAGATAAAACTCCACCAT+AGG | - | chr8_3:34254039-34254058 | None:intergenic | 40.0% | |
| !! | TATGGTGGAGTTTTATCTGG+AGG | + | chr8_3:34254038-34254057 | Msa1286400:CDS | 40.0% |
| ACACTGCTTAATCATGTCTC+TGG | + | chr8_3:34254168-34254187 | Msa1286400:intron | 40.0% | |
| TAGAATCATCCGTGCTTTCT+TGG | + | chr8_3:34254196-34254215 | Msa1286400:intron | 40.0% | |
| TTCTTCTTTCAGCGACGAGA+CGG | - | chr8_3:34251283-34251302 | None:intergenic | 45.0% | |
| ! | CCTATGTTGGTTGGATTTGG+TGG | - | chr8_3:34251362-34251381 | None:intergenic | 45.0% |
| CCACCAAATCCAACCAACAT+AGG | + | chr8_3:34251359-34251378 | Msa1286400:CDS | 45.0% | |
| CATAGGGTTGTCAAAACACC+CGG | + | chr8_3:34251376-34251395 | Msa1286400:CDS | 45.0% | |
| TTGTCAAAACACCCGGTAAG+TGG | + | chr8_3:34251383-34251402 | Msa1286400:intron | 45.0% | |
| ACAACCAAGAAGAGAGCTAG+TGG | + | chr8_3:34251517-34251536 | Msa1286400:CDS | 45.0% | |
| ! | CTAAGGGTGTGTTTGGATTG+AGG | + | chr8_3:34251916-34251935 | Msa1286400:intron | 45.0% |
| ATTGAGGGTTTAAGAGGGGA+AGG | + | chr8_3:34251932-34251951 | Msa1286400:intron | 45.0% | |
| TTGAGGGTTTAAGAGGGGAA+GGG | + | chr8_3:34251933-34251952 | Msa1286400:intron | 45.0% | |
| TTTAAGGGTTTAGCTGGGGA+GGG | - | chr8_3:34252133-34252152 | None:intergenic | 45.0% | |
| TAGTGCGCTACTGACAACAT+AGG | - | chr8_3:34252408-34252427 | None:intergenic | 45.0% | |
| GCATCCACTATTAGGGTTTC+AGG | + | chr8_3:34252469-34252488 | Msa1286400:intron | 45.0% | |
| TCTCCCTGAAACCCTAATAG+TGG | - | chr8_3:34252476-34252495 | None:intergenic | 45.0% | |
| GACTCCCTAACATGCTATAG+CGG | - | chr8_3:34252731-34252750 | None:intergenic | 45.0% | |
| GAGTCGCTGCTACACTATTT+GGG | + | chr8_3:34252746-34252765 | Msa1286400:intron | 45.0% | |
| ! | ACTAGTACTGGATGTGATGG+TGG | + | chr8_3:34252849-34252868 | Msa1286400:intron | 45.0% |
| TTGTGGAGCTGGTACAGAAT+CGG | + | chr8_3:34252921-34252940 | Msa1286400:intron | 45.0% | |
| !!! | AAAGGTTTTGCCTAGCCTTG+AGG | + | chr8_3:34253225-34253244 | Msa1286400:intron | 45.0% |
| TTCTTCCGCATCAGTCATGT+TGG | + | chr8_3:34253472-34253491 | Msa1286400:intron | 45.0% | |
| ACCATCCAACATGACTGATG+CGG | - | chr8_3:34253480-34253499 | None:intergenic | 45.0% | |
| ! | GACTTATACAAGGCACCATG+AGG | - | chr8_3:34253550-34253569 | None:intergenic | 45.0% |
| CTGGTTAAGGAAGCCAAAAG+TGG | + | chr8_3:34253662-34253681 | Msa1286400:intron | 45.0% | |
| AAATGTTAACCAATGCCCCC+GGG | - | chr8_3:34253786-34253805 | None:intergenic | 45.0% | |
| GAAATGTTAACCAATGCCCC+CGG | - | chr8_3:34253787-34253806 | None:intergenic | 45.0% | |
| TAGCCTGGATCTCTTGTACT+CGG | - | chr8_3:34253988-34254007 | None:intergenic | 45.0% | |
| ! | TTCACAGTCCTCCTGTTTCT+AGG | - | chr8_3:34254011-34254030 | None:intergenic | 45.0% |
| !! | GCCTATGGTGGAGTTTTATC+TGG | + | chr8_3:34254035-34254054 | Msa1286400:CDS | 45.0% |
| GCTCTTCAACCAAGAAAGCA+CGG | - | chr8_3:34254208-34254227 | None:intergenic | 45.0% | |
| TTGTGCTTCCCAAAAGCTAC+TGG | - | chr8_3:34254625-34254644 | None:intergenic | 45.0% | |
| !! | AGTAGCTTTTGGGAAGCACA+AGG | + | chr8_3:34254624-34254643 | Msa1286400:three_prime_UTR | 45.0% |
| !!! | ATTTTATTCTTTTTTTTTTT+TGG | - | chr8_3:34253075-34253094 | None:intergenic | 5.0% |
| ! | TGGTCCACTAGCTCTCTTCT+TGG | - | chr8_3:34251524-34251543 | None:intergenic | 50.0% |
| GGACCAAAATGCCCTGTTAC+TGG | + | chr8_3:34251538-34251557 | Msa1286400:CDS | 50.0% | |
| ! | TAGTAGCTGGTCGAGTTGTG+AGG | + | chr8_3:34251872-34251891 | Msa1286400:intron | 50.0% |
| GGTTTAAGAGGGGAAGGGAA+TGG | + | chr8_3:34251938-34251957 | Msa1286400:intron | 50.0% | |
| TAAGAGGGGAAGGGAATGGA+AGG | + | chr8_3:34251942-34251961 | Msa1286400:intron | 50.0% | |
| AAGAGGGGAAGGGAATGGAA+GGG | + | chr8_3:34251943-34251962 | Msa1286400:intron | 50.0% | |
| GTTTAAGGGTTTAGCTGGGG+AGG | - | chr8_3:34252134-34252153 | None:intergenic | 50.0% | |
| GGAGTCGCTGCTACACTATT+TGG | + | chr8_3:34252745-34252764 | Msa1286400:intron | 50.0% | |
| !! | TGGATGTGATGGTGGACTGT+GGG | + | chr8_3:34252857-34252876 | Msa1286400:intron | 50.0% |
| GCAATTGTCACCTCAAGGCT+AGG | - | chr8_3:34253238-34253257 | None:intergenic | 50.0% | |
| TCCGCATCAGTCATGTTGGA+TGG | + | chr8_3:34253476-34253495 | Msa1286400:intron | 50.0% | |
| ! | GGGATTAGGACTGCCTTTTC+TGG | - | chr8_3:34253529-34253548 | None:intergenic | 50.0% |
| AAGGCAGTCCTAATCCCTCA+TGG | + | chr8_3:34253532-34253551 | Msa1286400:intron | 50.0% | |
| ! | ACAAGGCACCATGAGGGATT+AGG | - | chr8_3:34253543-34253562 | None:intergenic | 50.0% |
| TAACTCCTTAACCAGTGCCC+CGG | + | chr8_3:34253765-34253784 | Msa1286400:intron | 50.0% | |
| AATGTTAACCAATGCCCCCG+GGG | - | chr8_3:34253785-34253804 | None:intergenic | 50.0% | |
| ! | TACTCGGTGGGTCTTAGATG+TGG | - | chr8_3:34253972-34253991 | None:intergenic | 50.0% |
| CTGGATCTCTTGTACTCGGT+GGG | - | chr8_3:34253984-34254003 | None:intergenic | 50.0% | |
| GATCCAGGCTACCTAGAAAC+AGG | + | chr8_3:34253997-34254016 | Msa1286400:CDS | 50.0% | |
| AGGACTGTGAATCGTGCCTA+TGG | + | chr8_3:34254020-34254039 | Msa1286400:CDS | 50.0% | |
| ACTGTGAATCGTGCCTATGG+TGG | + | chr8_3:34254023-34254042 | Msa1286400:CDS | 50.0% | |
| !! | CTGGAGGTGCTGTTAGAGAA+AGG | + | chr8_3:34254054-34254073 | Msa1286400:CDS | 50.0% |
| TTTCAGCGACGAGACGGAGA+CGG | - | chr8_3:34251277-34251296 | None:intergenic | 55.0% | |
| TTCAGAGGCTTACCTACCGC+AGG | + | chr8_3:34251323-34251342 | Msa1286400:CDS | 55.0% | |
| !! | TGGATTTGGTGGCGTAGCTG+TGG | - | chr8_3:34251351-34251370 | None:intergenic | 55.0% |
| GCGCACTACTGCGTTAATCG+CGG | + | chr8_3:34252420-34252439 | Msa1286400:intron | 55.0% | |
| !! | CTGGATGTGATGGTGGACTG+TGG | + | chr8_3:34252856-34252875 | Msa1286400:intron | 55.0% |
| !! | ATGTGATGGTGGACTGTGGG+CGG | + | chr8_3:34252860-34252879 | Msa1286400:intron | 55.0% |
| GTCATGTTAACCAGTGCCCC+CGG | + | chr8_3:34253635-34253654 | Msa1286400:intron | 55.0% | |
| TCATGTTAACCAGTGCCCCC+GGG | + | chr8_3:34253636-34253655 | Msa1286400:intron | 55.0% | |
| AACTCCTTAACCAGTGCCCC+GGG | + | chr8_3:34253766-34253785 | Msa1286400:intron | 55.0% | |
| CCTGGATCTCTTGTACTCGG+TGG | - | chr8_3:34253985-34254004 | None:intergenic | 55.0% | |
| CCACCGAGTACAAGAGATCC+AGG | + | chr8_3:34253982-34254001 | Msa1286400:CDS | 55.0% | |
| !! | CCTCCTGTTTCTAGGTAGCC+TGG | - | chr8_3:34254003-34254022 | None:intergenic | 55.0% |
| CCAGGCTACCTAGAAACAGG+AGG | + | chr8_3:34254000-34254019 | Msa1286400:CDS | 55.0% | |
| CATGTTAACCAGTGCCCCCG+GGG | + | chr8_3:34253637-34253656 | Msa1286400:intron | 60.0% | |
| TTCCTTAACCAGTGCCCCGG+GGG | - | chr8_3:34253654-34253673 | None:intergenic | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | - | chr8_3:34253655-34253674 | None:intergenic | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | - | chr8_3:34253656-34253675 | None:intergenic | 60.0% | |
| GGCTTCCTTAACCAGTGCCC+CGG | - | chr8_3:34253657-34253676 | None:intergenic | 60.0% | |
| ACTCCTTAACCAGTGCCCCG+GGG | + | chr8_3:34253767-34253786 | Msa1286400:intron | 60.0% | |
| CGACGAGACGGAGACGGAGA+AGG | - | chr8_3:34251271-34251290 | None:intergenic | 65.0% | |
| CTCCTTAACCAGTGCCCCGG+GGG | + | chr8_3:34253768-34253787 | Msa1286400:intron | 65.0% | |
| GTAGCTGTGGCGCCTGCGGT+AGG | - | chr8_3:34251338-34251357 | None:intergenic | 70.0% | |
| TGGCGTAGCTGTGGCGCCTG+CGG | - | chr8_3:34251342-34251361 | None:intergenic | 70.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | + | chr8_3:34253649-34253668 | Msa1286400:intron | 70.0% |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr8_3:34253649-34253668 | None:intergenic | 70.0% |
| ! | AACCAGTGCCCCGGGGGCAT+TGG | + | chr8_3:34253774-34253793 | Msa1286400:intron | 70.0% |
| AACCAATGCCCCCGGGGCAC+TGG | - | chr8_3:34253779-34253798 | None:intergenic | 70.0% | |
| AACCAGTGCCCCCGGGGCAC+TGG | + | chr8_3:34253643-34253662 | Msa1286400:intron | 75.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+TGG | - | chr8_3:34253648-34253667 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 34251244 | 34254658 | 34251244 | ID=Msa1286400;Name=Msa1286400 |
| chr8_3 | mRNA | 34251244 | 34254658 | 34251244 | ID=Msa1286400-mRNA-1;Parent=Msa1286400;Name=Msa1286400-mRNA-1;_AED=0.12;_eAED=0.12;_QI=75|1|1|1|0.75|0.6|5|341|120 |
| chr8_3 | exon | 34251244 | 34251397 | 34251244 | ID=Msa1286400-mRNA-1:exon:10213;Parent=Msa1286400-mRNA-1 |
| chr8_3 | exon | 34251497 | 34251576 | 34251497 | ID=Msa1286400-mRNA-1:exon:10214;Parent=Msa1286400-mRNA-1 |
| chr8_3 | exon | 34253966 | 34254075 | 34253966 | ID=Msa1286400-mRNA-1:exon:10215;Parent=Msa1286400-mRNA-1 |
| chr8_3 | exon | 34254199 | 34254554 | 34254199 | ID=Msa1286400-mRNA-1:exon:10216;Parent=Msa1286400-mRNA-1 |
| chr8_3 | exon | 34254580 | 34254658 | 34254580 | ID=Msa1286400-mRNA-1:exon:10217;Parent=Msa1286400-mRNA-1 |
| chr8_3 | five_prime_UTR | 34251244 | 34251318 | 34251244 | ID=Msa1286400-mRNA-1:five_prime_utr;Parent=Msa1286400-mRNA-1 |
| chr8_3 | CDS | 34251319 | 34251397 | 34251319 | ID=Msa1286400-mRNA-1:cds;Parent=Msa1286400-mRNA-1 |
| chr8_3 | CDS | 34251497 | 34251576 | 34251497 | ID=Msa1286400-mRNA-1:cds;Parent=Msa1286400-mRNA-1 |
| chr8_3 | CDS | 34253966 | 34254075 | 34253966 | ID=Msa1286400-mRNA-1:cds;Parent=Msa1286400-mRNA-1 |
| chr8_3 | CDS | 34254199 | 34254292 | 34254199 | ID=Msa1286400-mRNA-1:cds;Parent=Msa1286400-mRNA-1 |
| chr8_3 | three_prime_UTR | 34254293 | 34254554 | 34254293 | ID=Msa1286400-mRNA-1:three_prime_utr;Parent=Msa1286400-mRNA-1 |
| chr8_3 | three_prime_UTR | 34254580 | 34254658 | 34254580 | ID=Msa1286400-mRNA-1:three_prime_utr;Parent=Msa1286400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
