AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0681090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681090 MtrunA17_Chr4g0027111 95.679 162 7 0 1 162 1 162 3.86e-110 310
Msa0681090 MtrunA17_Chr2g0321011 77.160 162 36 1 1 162 1 161 2.95e-87 252
Msa0681090 MtrunA17_Chr1g0179601 36.842 95 58 1 1 95 3 95 1.03e-18 78.2
Msa0681090 MtrunA17_Chr7g0265501 36.842 95 58 1 1 95 3 95 1.23e-18 77.8
Msa0681090 MtrunA17_Chr7g0265491 36.842 95 58 1 1 95 3 95 1.23e-18 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0681090 AT2G44860.2 68.712 163 46 2 1 162 1 159 3.00e-79 232
Msa0681090 AT2G44860.1 68.712 163 46 2 1 162 1 159 3.00e-79 232
Msa0681090 AT3G53020.1 36.842 95 58 1 1 95 3 95 1.15e-17 75.9
Msa0681090 AT2G36620.1 36.842 95 58 1 1 95 3 95 3.40e-17 74.7

Find 77 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGTTGTTAAGAAATTTC+TGG 0.224050 4_4:+41045598 Msa0681090:three_prime_UTR
GTGTGGCCGCCACTTATGTT+AGG 0.247021 4_4:-41043180 None:intergenic
GCTTGGATCTTAGCAATCTT+TGG 0.263538 4_4:-41045040 None:intergenic
GGCCACACCGCCCCGACATT+AGG 0.321803 4_4:+41043195 Msa0681090:five_prime_UTR
GGAATCCTCGGAAAGTAAAA+TGG 0.330997 4_4:+41044791 Msa0681090:CDS
GTGATTCACCCCTGCTGGCT+TGG 0.333600 4_4:-41045057 None:intergenic
ACGATTCTCCTCTGCTTGTT+GGG 0.350782 4_4:-41045306 None:intergenic
GCCACACCGCCCCGACATTA+GGG 0.361441 4_4:+41043196 Msa0681090:five_prime_UTR
ATGCTGCATCCTCCTTGATT+AGG 0.367570 4_4:+41045349 Msa0681090:three_prime_UTR
CACGATTCTCCTCTGCTTGT+TGG 0.372186 4_4:-41045307 None:intergenic
TATGTTGTTAAGAAATTTCT+GGG 0.372541 4_4:+41045599 Msa0681090:three_prime_UTR
CAGATGGAGCTTTAAGTAGA+TGG 0.394379 4_4:-41045247 None:intergenic
GTGAATCACACCACGCTAAC+AGG 0.412925 4_4:+41045071 Msa0681090:CDS
GTCCAAGGAGACTTCATCTT+AGG 0.446193 4_4:-41045534 None:intergenic
TAAAATGGACCAAGGCATAT+AGG 0.453354 4_4:+41044806 Msa0681090:CDS
TTCATCATTCACATTACTGA+TGG 0.454185 4_4:-41045397 None:intergenic
TAGCATCATTACGAACAAAC+TGG 0.456216 4_4:-41043446 None:intergenic
AAAGTGTTGATTTAGTTTGA+AGG 0.456272 4_4:+41043363 Msa0681090:five_prime_UTR
TCATCTCCTCCTCATTCCTC+AGG 0.468144 4_4:+41043226 Msa0681090:five_prime_UTR
TCTACTGTATACCCTGGTCA+TGG 0.468506 4_4:+41043420 Msa0681090:CDS
TGATGATAAACCCTAATGTC+GGG 0.474619 4_4:-41043206 None:intergenic
TCCATCTGCTGTGCTTGCGC+CGG 0.476430 4_4:+41045262 Msa0681090:CDS
TGCCTAAGATGAAGTCTCCT+TGG 0.496927 4_4:+41045532 Msa0681090:three_prime_UTR
GTGCACCCGCCTATATGCCT+TGG 0.497127 4_4:-41044815 None:intergenic
TTGCTAAGATCCAAGCCAGC+AGG 0.500416 4_4:+41045047 Msa0681090:CDS
GATCTTAGCAATCTTTGGAA+TGG 0.502280 4_4:-41045035 None:intergenic
GCAGAAGGTGCGGAAGGAAG+CGG 0.510082 4_4:+41045202 Msa0681090:CDS
AGATTCCTGTCGTATCTCTC+AGG 0.514561 4_4:-41044992 None:intergenic
TGTGGCCGCCACTTATGTTA+GGG 0.515450 4_4:-41043179 None:intergenic
TTGTAACTTAAGCCTAATCA+AGG 0.516618 4_4:-41045361 None:intergenic
TCCGGCGCAAGCACAGCAGA+TGG 0.523709 4_4:-41045263 None:intergenic
AAATGAGATTAGAGAAGTGT+TGG 0.527939 4_4:+41043388 Msa0681090:exon
CGATAGATTCAAGACGTCCA+AGG 0.534557 4_4:-41045549 None:intergenic
ACCGCCACCTTGATCTTCTC+CGG 0.535052 4_4:-41045281 None:intergenic
GTGGTGTGATTCACCCCTGC+TGG 0.542077 4_4:-41045062 None:intergenic
CAAGAAGCAGAAGGTGCGGA+AGG 0.551683 4_4:+41045196 Msa0681090:CDS
CTACTGTATACCCTGGTCAT+GGG 0.551883 4_4:+41043421 Msa0681090:CDS
CCTCGTAACCCTAACATAAG+TGG 0.552382 4_4:+41043171 None:intergenic
ATGATGATAAACCCTAATGT+CGG 0.553144 4_4:-41043207 None:intergenic
TCAAAATGAAGAGGAATCCT+CGG 0.559408 4_4:+41044779 Msa0681090:CDS
GTTTGTTCGTAATGATGCTA+AGG 0.562939 4_4:+41043449 Msa0681090:CDS
TCATCATTCACATTACTGAT+GGG 0.565492 4_4:-41045396 None:intergenic
ACCCTAATGTCGGGGCGGTG+TGG 0.567042 4_4:-41043197 None:intergenic
ACAAGAACTTCAAAATGAAG+AGG 0.570899 4_4:+41044770 Msa0681090:CDS
GAAGATGAACCTGAGGAATG+AGG 0.572909 4_4:-41043235 None:intergenic
CAATCTTTGGAATGGCCTTG+AGG 0.574848 4_4:-41045027 None:intergenic
ACAAACTGGATCCCATGACC+AGG 0.582418 4_4:-41043432 None:intergenic
GCTTGCGCCGGAGAAGATCA+AGG 0.582872 4_4:+41045274 Msa0681090:CDS
GCCGGAGAAGATCAAGGTGG+CGG 0.584956 4_4:+41045280 Msa0681090:CDS
ATCACTAACGTAATTCTCAA+AGG 0.587274 4_4:-41045438 None:intergenic
GGCGGTTTCCCAACAAGCAG+AGG 0.588475 4_4:+41045298 Msa0681090:CDS
AAGGCATATAGGCGGGTGCA+CGG 0.588735 4_4:+41044817 Msa0681090:CDS
ATGGACCAAGGCATATAGGC+GGG 0.589542 4_4:+41044810 Msa0681090:CDS
ATATAGGCGGGTGCACGGAA+AGG 0.591224 4_4:+41044822 Msa0681090:CDS
TGTTCTTCTACTGTATACCC+TGG 0.595309 4_4:+41043414 Msa0681090:CDS
GATGAGCGGCAAGAAGCAGA+AGG 0.613802 4_4:+41045187 Msa0681090:CDS
TGCTAAGATCCAAGCCAGCA+GGG 0.615872 4_4:+41045048 Msa0681090:CDS
TCTTACTGAGGAAGTCCTCA+AGG 0.619553 4_4:+41045012 Msa0681090:CDS
AGCAGAGGAGAATCGTGTCA+TGG 0.619555 4_4:+41045313 Msa0681090:CDS
CCACTTATGTTAGGGTTACG+AGG 0.623177 4_4:-41043171 None:intergenic
GCGGCAAGAAGCAGAAGGTG+CGG 0.634205 4_4:+41045192 Msa0681090:CDS
ACAGACCTGAGAGATACGAC+AGG 0.640425 4_4:+41044987 Msa0681090:CDS
TTAATCTCCCATAGGATGAG+CGG 0.649799 4_4:+41045173 Msa0681090:intron
TAATCAAGGAGGATGCAGCA+TGG 0.653262 4_4:-41045347 None:intergenic
GCTAAGATCCAAGCCAGCAG+GGG 0.666858 4_4:+41045049 Msa0681090:CDS
GATGATAAACCCTAATGTCG+GGG 0.670518 4_4:-41043205 None:intergenic
AAGAGAATAACCTGTTAGCG+TGG 0.670988 4_4:-41045081 None:intergenic
GATGAACCTGAGGAATGAGG+AGG 0.674826 4_4:-41043232 None:intergenic
AATGGACCAAGGCATATAGG+CGG 0.680334 4_4:+41044809 Msa0681090:CDS
TCGGAAAGTAAAATGGACCA+AGG 0.688428 4_4:+41044798 Msa0681090:CDS
CGTAACCCTAACATAAGTGG+CGG 0.694238 4_4:+41043174 Msa0681090:five_prime_UTR
GCACGGAAAGGACATGACAC+AGG 0.700411 4_4:+41044834 Msa0681090:CDS
TAACTTAAGCCTAATCAAGG+AGG 0.702718 4_4:-41045358 None:intergenic
GATAAACCCTAATGTCGGGG+CGG 0.703535 4_4:-41043202 None:intergenic
ATACGACAGGAATCTTACTG+AGG 0.719986 4_4:+41045000 Msa0681090:CDS
CAAACTGGATCCCATGACCA+GGG 0.724383 4_4:-41043431 None:intergenic
TGCGCCGGAGAAGATCAAGG+TGG 0.789068 4_4:+41045277 Msa0681090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTGAAAATTAATAG+CGG + chr4_4:41043526-41043545 Msa0681090:intron 10.0%
!!! TTTTATATATAATTGACTTA+GGG + chr4_4:41044104-41044123 Msa0681090:intron 10.0%
!! TTACATATAAAAGATAAATA+AGG - chr4_4:41044639-41044658 None:intergenic 10.0%
!!! ATTTATCTTTTATATGTAAA+TGG + chr4_4:41044640-41044659 Msa0681090:intron 10.0%
!!! AAATTTTTGAAAATTAATAG+CGG + chr4_4:41043526-41043545 Msa0681090:intron 10.0%
!!! TTTTATATATAATTGACTTA+GGG + chr4_4:41044104-41044123 Msa0681090:intron 10.0%
!! TTACATATAAAAGATAAATA+AGG - chr4_4:41044639-41044658 None:intergenic 10.0%
!!! ATTTATCTTTTATATGTAAA+TGG + chr4_4:41044640-41044659 Msa0681090:intron 10.0%
!! AAAGTTAAAATTCGATTAAA+TGG - chr4_4:41043330-41043349 None:intergenic 15.0%
!!! ATTACTTTTACATATACAAT+AGG - chr4_4:41043719-41043738 None:intergenic 15.0%
!!! ATTATGCTAATTTTGTTATT+AGG + chr4_4:41043859-41043878 Msa0681090:intron 15.0%
!!! TTATGCTAATTTTGTTATTA+GGG + chr4_4:41043860-41043879 Msa0681090:intron 15.0%
!! CTAAGTCAATTATATATAAA+AGG - chr4_4:41044105-41044124 None:intergenic 15.0%
!!! CTTTTATATATAATTGACTT+AGG + chr4_4:41044103-41044122 Msa0681090:intron 15.0%
!! AAAGTTAAAATTCGATTAAA+TGG - chr4_4:41043330-41043349 None:intergenic 15.0%
!!! ATTACTTTTACATATACAAT+AGG - chr4_4:41043719-41043738 None:intergenic 15.0%
!!! ATTATGCTAATTTTGTTATT+AGG + chr4_4:41043859-41043878 Msa0681090:intron 15.0%
!!! TTATGCTAATTTTGTTATTA+GGG + chr4_4:41043860-41043879 Msa0681090:intron 15.0%
!! CTAAGTCAATTATATATAAA+AGG - chr4_4:41044105-41044124 None:intergenic 15.0%
!!! CTTTTATATATAATTGACTT+AGG + chr4_4:41044103-41044122 Msa0681090:intron 15.0%
!!! TAGTGAATTTTGATGAATTA+AGG + chr4_4:41043567-41043586 Msa0681090:intron 20.0%
!!! TATTTTGCTCATTTATGAAT+CGG + chr4_4:41044013-41044032 Msa0681090:intron 20.0%
!!! TTTTCAAAATGAGTTGAAAA+AGG - chr4_4:41044233-41044252 None:intergenic 20.0%
!!! ATCTTTTATATGTAAATGGA+AGG + chr4_4:41044644-41044663 Msa0681090:intron 20.0%
!!! ACTTTTTACGTTTTTGTTTT+AGG + chr4_4:41044934-41044953 Msa0681090:intron 20.0%
!!! ATGAATTTTTGAAAGAGTTT+TGG + chr4_4:41045415-41045434 Msa0681090:three_prime_UTR 20.0%
!! TTATGTTGTTAAGAAATTTC+TGG + chr4_4:41045598-41045617 Msa0681090:three_prime_UTR 20.0%
!! TATGTTGTTAAGAAATTTCT+GGG + chr4_4:41045599-41045618 Msa0681090:three_prime_UTR 20.0%
!!! TAGTGAATTTTGATGAATTA+AGG + chr4_4:41043567-41043586 Msa0681090:intron 20.0%
!!! TATTTTGCTCATTTATGAAT+CGG + chr4_4:41044013-41044032 Msa0681090:intron 20.0%
!!! TTTTCAAAATGAGTTGAAAA+AGG - chr4_4:41044233-41044252 None:intergenic 20.0%
!!! ATCTTTTATATGTAAATGGA+AGG + chr4_4:41044644-41044663 Msa0681090:intron 20.0%
!!! ACTTTTTACGTTTTTGTTTT+AGG + chr4_4:41044934-41044953 Msa0681090:intron 20.0%
!!! ATGAATTTTTGAAAGAGTTT+TGG + chr4_4:41045415-41045434 Msa0681090:three_prime_UTR 20.0%
!! TTATGTTGTTAAGAAATTTC+TGG + chr4_4:41045598-41045617 Msa0681090:three_prime_UTR 20.0%
!! TATGTTGTTAAGAAATTTCT+GGG + chr4_4:41045599-41045618 Msa0681090:three_prime_UTR 20.0%
! ATTGTATAATCGTTGAGTAA+TGG - chr4_4:41043290-41043309 None:intergenic 25.0%
! AAATGGAAAATTAACGATGA+TGG - chr4_4:41043313-41043332 None:intergenic 25.0%
!!! AAAGTGTTGATTTAGTTTGA+AGG + chr4_4:41043363-41043382 Msa0681090:five_prime_UTR 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr4_4:41043814-41043833 Msa0681090:intron 25.0%
! ACAAAATTAGCATAATGTAG+TGG - chr4_4:41043855-41043874 None:intergenic 25.0%
! GATTCATAAATGAGCAAAAT+AGG - chr4_4:41044014-41044033 None:intergenic 25.0%
! TCAATACATAATCTTTGCTT+TGG + chr4_4:41044050-41044069 Msa0681090:intron 25.0%
! GTTGCGTATACATAAATAAA+TGG - chr4_4:41044078-41044097 None:intergenic 25.0%
! TTATTTATGTATACGCAACA+TGG + chr4_4:41044079-41044098 Msa0681090:intron 25.0%
! GGATAATCAATAAACTAAAC+AGG - chr4_4:41044618-41044637 None:intergenic 25.0%
! TAATGAGACTAGGAAATTAA+GGG - chr4_4:41044877-41044896 None:intergenic 25.0%
! ATAATGAGACTAGGAAATTA+AGG - chr4_4:41044878-41044897 None:intergenic 25.0%
! AAAACGTATACTAAAGCTTT+GGG - chr4_4:41045127-41045146 None:intergenic 25.0%
! AAAAACGTATACTAAAGCTT+TGG - chr4_4:41045128-41045147 None:intergenic 25.0%
!!! GTGATGTTGTTTTTTGTTTT+TGG + chr4_4:41045456-41045475 Msa0681090:three_prime_UTR 25.0%
! ATTGTATAATCGTTGAGTAA+TGG - chr4_4:41043290-41043309 None:intergenic 25.0%
! AAATGGAAAATTAACGATGA+TGG - chr4_4:41043313-41043332 None:intergenic 25.0%
!!! AAAGTGTTGATTTAGTTTGA+AGG + chr4_4:41043363-41043382 Msa0681090:five_prime_UTR 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr4_4:41043814-41043833 Msa0681090:intron 25.0%
! ACAAAATTAGCATAATGTAG+TGG - chr4_4:41043855-41043874 None:intergenic 25.0%
! GATTCATAAATGAGCAAAAT+AGG - chr4_4:41044014-41044033 None:intergenic 25.0%
! TCAATACATAATCTTTGCTT+TGG + chr4_4:41044050-41044069 Msa0681090:intron 25.0%
! GTTGCGTATACATAAATAAA+TGG - chr4_4:41044078-41044097 None:intergenic 25.0%
! TTATTTATGTATACGCAACA+TGG + chr4_4:41044079-41044098 Msa0681090:intron 25.0%
! GGATAATCAATAAACTAAAC+AGG - chr4_4:41044618-41044637 None:intergenic 25.0%
! TAATGAGACTAGGAAATTAA+GGG - chr4_4:41044877-41044896 None:intergenic 25.0%
! ATAATGAGACTAGGAAATTA+AGG - chr4_4:41044878-41044897 None:intergenic 25.0%
! AAAACGTATACTAAAGCTTT+GGG - chr4_4:41045127-41045146 None:intergenic 25.0%
! AAAAACGTATACTAAAGCTT+TGG - chr4_4:41045128-41045147 None:intergenic 25.0%
!!! GTGATGTTGTTTTTTGTTTT+TGG + chr4_4:41045456-41045475 Msa0681090:three_prime_UTR 25.0%
ATGATGATAAACCCTAATGT+CGG - chr4_4:41043210-41043229 None:intergenic 30.0%
TGGTGATAAATTGAAGAGAT+TGG - chr4_4:41043270-41043289 None:intergenic 30.0%
! AAATGAGATTAGAGAAGTGT+TGG + chr4_4:41043388-41043407 Msa0681090:exon 30.0%
TGTTATAGCTCTTGTTGAAT+TGG + chr4_4:41043490-41043509 Msa0681090:intron 30.0%
AAAATTAATAGCGGTGATAG+AGG + chr4_4:41043535-41043554 Msa0681090:intron 30.0%
AAATTAATAGCGGTGATAGA+GGG + chr4_4:41043536-41043555 Msa0681090:intron 30.0%
TGATGAATTAAGGATCTGTT+TGG + chr4_4:41043577-41043596 Msa0681090:intron 30.0%
AATTAAGGATCTGTTTGGAT+TGG + chr4_4:41043582-41043601 Msa0681090:intron 30.0%
!! GCTGTTTTCATAAGTTATCT+TGG - chr4_4:41043697-41043716 None:intergenic 30.0%
! TGTAGTGGTTTTCATACTTA+GGG - chr4_4:41043840-41043859 None:intergenic 30.0%
! ATGTAGTGGTTTTCATACTT+AGG - chr4_4:41043841-41043860 None:intergenic 30.0%
TCAAATAAGTCATTCCAAAC+AGG - chr4_4:41044130-41044149 None:intergenic 30.0%
! GGCTTGTGAAAATTTTCATA+AGG - chr4_4:41044212-41044231 None:intergenic 30.0%
GCAAAGTTGTTTATCCAAAT+AGG + chr4_4:41044348-41044367 Msa0681090:intron 30.0%
!!! TCTTCATTTTGAAGTTCTTG+TGG - chr4_4:41044771-41044790 None:intergenic 30.0%
ACAAGAACTTCAAAATGAAG+AGG + chr4_4:41044770-41044789 Msa0681090:CDS 30.0%
ATCAACACAATAATGAGACT+AGG - chr4_4:41044887-41044906 None:intergenic 30.0%
!! TATTGTGTTGATTACTCTCT+TGG + chr4_4:41044895-41044914 Msa0681090:intron 30.0%
TTGTAACTTAAGCCTAATCA+AGG - chr4_4:41045364-41045383 None:intergenic 30.0%
TCATCATTCACATTACTGAT+GGG - chr4_4:41045399-41045418 None:intergenic 30.0%
TTCATCATTCACATTACTGA+TGG - chr4_4:41045400-41045419 None:intergenic 30.0%
ATCACTAACGTAATTCTCAA+AGG - chr4_4:41045441-41045460 None:intergenic 30.0%
ATGATGATAAACCCTAATGT+CGG - chr4_4:41043210-41043229 None:intergenic 30.0%
TGGTGATAAATTGAAGAGAT+TGG - chr4_4:41043270-41043289 None:intergenic 30.0%
! AAATGAGATTAGAGAAGTGT+TGG + chr4_4:41043388-41043407 Msa0681090:exon 30.0%
TGTTATAGCTCTTGTTGAAT+TGG + chr4_4:41043490-41043509 Msa0681090:intron 30.0%
AAAATTAATAGCGGTGATAG+AGG + chr4_4:41043535-41043554 Msa0681090:intron 30.0%
AAATTAATAGCGGTGATAGA+GGG + chr4_4:41043536-41043555 Msa0681090:intron 30.0%
TGATGAATTAAGGATCTGTT+TGG + chr4_4:41043577-41043596 Msa0681090:intron 30.0%
AATTAAGGATCTGTTTGGAT+TGG + chr4_4:41043582-41043601 Msa0681090:intron 30.0%
!! GCTGTTTTCATAAGTTATCT+TGG - chr4_4:41043697-41043716 None:intergenic 30.0%
! TGTAGTGGTTTTCATACTTA+GGG - chr4_4:41043840-41043859 None:intergenic 30.0%
! ATGTAGTGGTTTTCATACTT+AGG - chr4_4:41043841-41043860 None:intergenic 30.0%
TCAAATAAGTCATTCCAAAC+AGG - chr4_4:41044130-41044149 None:intergenic 30.0%
! GGCTTGTGAAAATTTTCATA+AGG - chr4_4:41044212-41044231 None:intergenic 30.0%
GCAAAGTTGTTTATCCAAAT+AGG + chr4_4:41044348-41044367 Msa0681090:intron 30.0%
!!! TCTTCATTTTGAAGTTCTTG+TGG - chr4_4:41044771-41044790 None:intergenic 30.0%
ACAAGAACTTCAAAATGAAG+AGG + chr4_4:41044770-41044789 Msa0681090:CDS 30.0%
ATCAACACAATAATGAGACT+AGG - chr4_4:41044887-41044906 None:intergenic 30.0%
!! TATTGTGTTGATTACTCTCT+TGG + chr4_4:41044895-41044914 Msa0681090:intron 30.0%
TTGTAACTTAAGCCTAATCA+AGG - chr4_4:41045364-41045383 None:intergenic 30.0%
TCATCATTCACATTACTGAT+GGG - chr4_4:41045399-41045418 None:intergenic 30.0%
TTCATCATTCACATTACTGA+TGG - chr4_4:41045400-41045419 None:intergenic 30.0%
ATCACTAACGTAATTCTCAA+AGG - chr4_4:41045441-41045460 None:intergenic 30.0%
TGATGATAAACCCTAATGTC+GGG - chr4_4:41043209-41043228 None:intergenic 35.0%
TTGAAGAGATTGGTGAAGAA+GGG - chr4_4:41043260-41043279 None:intergenic 35.0%
ATTGAAGAGATTGGTGAAGA+AGG - chr4_4:41043261-41043280 None:intergenic 35.0%
TAGCATCATTACGAACAAAC+TGG - chr4_4:41043449-41043468 None:intergenic 35.0%
GTTTGTTCGTAATGATGCTA+AGG + chr4_4:41043449-41043468 Msa0681090:CDS 35.0%
!!! TTTTGTTATTAGGGCGATAG+TGG + chr4_4:41043869-41043888 Msa0681090:intron 35.0%
CATCAGCTAGCTAAATAAAC+TGG - chr4_4:41043903-41043922 None:intergenic 35.0%
! GCGCGAAAGAACAAAATTTT+AGG + chr4_4:41043937-41043956 Msa0681090:intron 35.0%
AATGAGCAAAATAGGTCATC+TGG - chr4_4:41044006-41044025 None:intergenic 35.0%
!!! GTAGTTTTGTGAGAAGGTTT+GGG + chr4_4:41044170-41044189 Msa0681090:intron 35.0%
! TTGGAGTATTAAGGCCTATT+TGG - chr4_4:41044365-41044384 None:intergenic 35.0%
! GCATAGCAATTGGAGTATTA+AGG - chr4_4:41044374-41044393 None:intergenic 35.0%
GAAATAGTAGATAGTGCTAC+AGG - chr4_4:41044412-41044431 None:intergenic 35.0%
!! AGTGGATTGCAGAAAAATAG+CGG - chr4_4:41044457-41044476 None:intergenic 35.0%
GAGATTAGCAGCATAAATAG+CGG - chr4_4:41044497-41044516 None:intergenic 35.0%
! GATAAGGTGATTTGGAGATT+TGG - chr4_4:41044530-41044549 None:intergenic 35.0%
ATTGGAGTGATAAGGTGATT+TGG - chr4_4:41044538-41044557 None:intergenic 35.0%
CTTATCACTCCAATCTAGAT+GGG + chr4_4:41044544-41044563 Msa0681090:intron 35.0%
TCAAAATGAAGAGGAATCCT+CGG + chr4_4:41044779-41044798 Msa0681090:CDS 35.0%
TAAAATGGACCAAGGCATAT+AGG + chr4_4:41044806-41044825 Msa0681090:CDS 35.0%
AGACTAGGAAATTAAGGGAA+AGG - chr4_4:41044872-41044891 None:intergenic 35.0%
! TGTTGATTACTCTCTTGGTT+TGG + chr4_4:41044900-41044919 Msa0681090:intron 35.0%
! GATCTTAGCAATCTTTGGAA+TGG - chr4_4:41045038-41045057 None:intergenic 35.0%
TCTGACATTTAATCTCCCAT+AGG + chr4_4:41045165-41045184 Msa0681090:intron 35.0%
TAACTTAAGCCTAATCAAGG+AGG - chr4_4:41045361-41045380 None:intergenic 35.0%
TGATGATAAACCCTAATGTC+GGG - chr4_4:41043209-41043228 None:intergenic 35.0%
TTGAAGAGATTGGTGAAGAA+GGG - chr4_4:41043260-41043279 None:intergenic 35.0%
ATTGAAGAGATTGGTGAAGA+AGG - chr4_4:41043261-41043280 None:intergenic 35.0%
TAGCATCATTACGAACAAAC+TGG - chr4_4:41043449-41043468 None:intergenic 35.0%
GTTTGTTCGTAATGATGCTA+AGG + chr4_4:41043449-41043468 Msa0681090:CDS 35.0%
!!! TTTTGTTATTAGGGCGATAG+TGG + chr4_4:41043869-41043888 Msa0681090:intron 35.0%
CATCAGCTAGCTAAATAAAC+TGG - chr4_4:41043903-41043922 None:intergenic 35.0%
! GCGCGAAAGAACAAAATTTT+AGG + chr4_4:41043937-41043956 Msa0681090:intron 35.0%
AATGAGCAAAATAGGTCATC+TGG - chr4_4:41044006-41044025 None:intergenic 35.0%
!!! GTAGTTTTGTGAGAAGGTTT+GGG + chr4_4:41044170-41044189 Msa0681090:intron 35.0%
! TTGGAGTATTAAGGCCTATT+TGG - chr4_4:41044365-41044384 None:intergenic 35.0%
! GCATAGCAATTGGAGTATTA+AGG - chr4_4:41044374-41044393 None:intergenic 35.0%
GAAATAGTAGATAGTGCTAC+AGG - chr4_4:41044412-41044431 None:intergenic 35.0%
!! AGTGGATTGCAGAAAAATAG+CGG - chr4_4:41044457-41044476 None:intergenic 35.0%
GAGATTAGCAGCATAAATAG+CGG - chr4_4:41044497-41044516 None:intergenic 35.0%
! GATAAGGTGATTTGGAGATT+TGG - chr4_4:41044530-41044549 None:intergenic 35.0%
ATTGGAGTGATAAGGTGATT+TGG - chr4_4:41044538-41044557 None:intergenic 35.0%
CTTATCACTCCAATCTAGAT+GGG + chr4_4:41044544-41044563 Msa0681090:intron 35.0%
TCAAAATGAAGAGGAATCCT+CGG + chr4_4:41044779-41044798 Msa0681090:CDS 35.0%
TAAAATGGACCAAGGCATAT+AGG + chr4_4:41044806-41044825 Msa0681090:CDS 35.0%
AGACTAGGAAATTAAGGGAA+AGG - chr4_4:41044872-41044891 None:intergenic 35.0%
! TGTTGATTACTCTCTTGGTT+TGG + chr4_4:41044900-41044919 Msa0681090:intron 35.0%
! GATCTTAGCAATCTTTGGAA+TGG - chr4_4:41045038-41045057 None:intergenic 35.0%
TCTGACATTTAATCTCCCAT+AGG + chr4_4:41045165-41045184 Msa0681090:intron 35.0%
TAACTTAAGCCTAATCAAGG+AGG - chr4_4:41045361-41045380 None:intergenic 35.0%
GATGATAAACCCTAATGTCG+GGG - chr4_4:41043208-41043227 None:intergenic 40.0%
TGTTCTTCTACTGTATACCC+TGG + chr4_4:41043414-41043433 Msa0681090:CDS 40.0%
TTTCATACTTAGGGCCTGTT+TGG - chr4_4:41043831-41043850 None:intergenic 40.0%
! TAATTGACTTAGGGCCTGTT+TGG + chr4_4:41044113-41044132 Msa0681090:intron 40.0%
!!! ATTCGCGTAGTTTTGTGAGA+AGG + chr4_4:41044164-41044183 Msa0681090:intron 40.0%
!!! CGTAGTTTTGTGAGAAGGTT+TGG + chr4_4:41044169-41044188 Msa0681090:intron 40.0%
AACTTTGCAGCTTATAGCAC+AGG - chr4_4:41044336-41044355 None:intergenic 40.0%
AGCAAAAGCAGCATAGCAAT+TGG - chr4_4:41044384-41044403 None:intergenic 40.0%
CCATCTAGATTGGAGTGATA+AGG - chr4_4:41044546-41044565 None:intergenic 40.0%
CCTTATCACTCCAATCTAGA+TGG + chr4_4:41044543-41044562 Msa0681090:intron 40.0%
TTGTGTCGCAGGATCAAATT+GGG + chr4_4:41044581-41044600 Msa0681090:intron 40.0%
GCTACACTTCACACTATATG+TGG + chr4_4:41044688-41044707 Msa0681090:intron 40.0%
GGAATCCTCGGAAAGTAAAA+TGG + chr4_4:41044791-41044810 Msa0681090:CDS 40.0%
! TTGGTCCATTTTACTTTCCG+AGG - chr4_4:41044799-41044818 None:intergenic 40.0%
TCGGAAAGTAAAATGGACCA+AGG + chr4_4:41044798-41044817 Msa0681090:CDS 40.0%
! GCGTTTTCTCTCAAACTCAA+AGG - chr4_4:41044966-41044985 None:intergenic 40.0%
ATACGACAGGAATCTTACTG+AGG + chr4_4:41045000-41045019 Msa0681090:CDS 40.0%
GCTTGGATCTTAGCAATCTT+TGG - chr4_4:41045043-41045062 None:intergenic 40.0%
AAGAGAATAACCTGTTAGCG+TGG - chr4_4:41045084-41045103 None:intergenic 40.0%
TTAATCTCCCATAGGATGAG+CGG + chr4_4:41045173-41045192 Msa0681090:intron 40.0%
!! CAGATGGAGCTTTAAGTAGA+TGG - chr4_4:41045250-41045269 None:intergenic 40.0%
GATGATAAACCCTAATGTCG+GGG - chr4_4:41043208-41043227 None:intergenic 40.0%
TGTTCTTCTACTGTATACCC+TGG + chr4_4:41043414-41043433 Msa0681090:CDS 40.0%
TTTCATACTTAGGGCCTGTT+TGG - chr4_4:41043831-41043850 None:intergenic 40.0%
! TAATTGACTTAGGGCCTGTT+TGG + chr4_4:41044113-41044132 Msa0681090:intron 40.0%
!!! ATTCGCGTAGTTTTGTGAGA+AGG + chr4_4:41044164-41044183 Msa0681090:intron 40.0%
!!! CGTAGTTTTGTGAGAAGGTT+TGG + chr4_4:41044169-41044188 Msa0681090:intron 40.0%
AACTTTGCAGCTTATAGCAC+AGG - chr4_4:41044336-41044355 None:intergenic 40.0%
AGCAAAAGCAGCATAGCAAT+TGG - chr4_4:41044384-41044403 None:intergenic 40.0%
CCATCTAGATTGGAGTGATA+AGG - chr4_4:41044546-41044565 None:intergenic 40.0%
CCTTATCACTCCAATCTAGA+TGG + chr4_4:41044543-41044562 Msa0681090:intron 40.0%
TTGTGTCGCAGGATCAAATT+GGG + chr4_4:41044581-41044600 Msa0681090:intron 40.0%
GCTACACTTCACACTATATG+TGG + chr4_4:41044688-41044707 Msa0681090:intron 40.0%
GGAATCCTCGGAAAGTAAAA+TGG + chr4_4:41044791-41044810 Msa0681090:CDS 40.0%
! TTGGTCCATTTTACTTTCCG+AGG - chr4_4:41044799-41044818 None:intergenic 40.0%
TCGGAAAGTAAAATGGACCA+AGG + chr4_4:41044798-41044817 Msa0681090:CDS 40.0%
! GCGTTTTCTCTCAAACTCAA+AGG - chr4_4:41044966-41044985 None:intergenic 40.0%
ATACGACAGGAATCTTACTG+AGG + chr4_4:41045000-41045019 Msa0681090:CDS 40.0%
GCTTGGATCTTAGCAATCTT+TGG - chr4_4:41045043-41045062 None:intergenic 40.0%
AAGAGAATAACCTGTTAGCG+TGG - chr4_4:41045084-41045103 None:intergenic 40.0%
TTAATCTCCCATAGGATGAG+CGG + chr4_4:41045173-41045192 Msa0681090:intron 40.0%
!! CAGATGGAGCTTTAAGTAGA+TGG - chr4_4:41045250-41045269 None:intergenic 40.0%
CGTAACCCTAACATAAGTGG+CGG + chr4_4:41043174-41043193 Msa0681090:five_prime_UTR 45.0%
GAAGATGAACCTGAGGAATG+AGG - chr4_4:41043238-41043257 None:intergenic 45.0%
AAGAAGGGAAGATGAACCTG+AGG - chr4_4:41043245-41043264 None:intergenic 45.0%
TCTACTGTATACCCTGGTCA+TGG + chr4_4:41043420-41043439 Msa0681090:CDS 45.0%
CTACTGTATACCCTGGTCAT+GGG + chr4_4:41043421-41043440 Msa0681090:CDS 45.0%
AGCTGATGTTAGCGTGTAGA+AGG + chr4_4:41043915-41043934 Msa0681090:intron 45.0%
! GAATGCAGTGCTGTTAACAG+TGG - chr4_4:41044475-41044494 None:intergenic 45.0%
GCAAGTAAGCCCATCTAGAT+TGG - chr4_4:41044556-41044575 None:intergenic 45.0%
CTTGTGTCGCAGGATCAAAT+TGG + chr4_4:41044580-41044599 Msa0681090:intron 45.0%
AATGGACCAAGGCATATAGG+CGG + chr4_4:41044809-41044828 Msa0681090:CDS 45.0%
AGATTCCTGTCGTATCTCTC+AGG - chr4_4:41044995-41045014 None:intergenic 45.0%
TCTTACTGAGGAAGTCCTCA+AGG + chr4_4:41045012-41045031 Msa0681090:CDS 45.0%
!! CAATCTTTGGAATGGCCTTG+AGG - chr4_4:41045030-41045049 None:intergenic 45.0%
ACGATTCTCCTCTGCTTGTT+GGG - chr4_4:41045309-41045328 None:intergenic 45.0%
TAATCAAGGAGGATGCAGCA+TGG - chr4_4:41045350-41045369 None:intergenic 45.0%
ATGCTGCATCCTCCTTGATT+AGG + chr4_4:41045349-41045368 Msa0681090:three_prime_UTR 45.0%
TGCCTAAGATGAAGTCTCCT+TGG + chr4_4:41045532-41045551 Msa0681090:three_prime_UTR 45.0%
GTCCAAGGAGACTTCATCTT+AGG - chr4_4:41045537-41045556 None:intergenic 45.0%
CGATAGATTCAAGACGTCCA+AGG - chr4_4:41045552-41045571 None:intergenic 45.0%
CGTAACCCTAACATAAGTGG+CGG + chr4_4:41043174-41043193 Msa0681090:five_prime_UTR 45.0%
GAAGATGAACCTGAGGAATG+AGG - chr4_4:41043238-41043257 None:intergenic 45.0%
AAGAAGGGAAGATGAACCTG+AGG - chr4_4:41043245-41043264 None:intergenic 45.0%
TCTACTGTATACCCTGGTCA+TGG + chr4_4:41043420-41043439 Msa0681090:CDS 45.0%
CTACTGTATACCCTGGTCAT+GGG + chr4_4:41043421-41043440 Msa0681090:CDS 45.0%
AGCTGATGTTAGCGTGTAGA+AGG + chr4_4:41043915-41043934 Msa0681090:intron 45.0%
! GAATGCAGTGCTGTTAACAG+TGG - chr4_4:41044475-41044494 None:intergenic 45.0%
GCAAGTAAGCCCATCTAGAT+TGG - chr4_4:41044556-41044575 None:intergenic 45.0%
CTTGTGTCGCAGGATCAAAT+TGG + chr4_4:41044580-41044599 Msa0681090:intron 45.0%
AATGGACCAAGGCATATAGG+CGG + chr4_4:41044809-41044828 Msa0681090:CDS 45.0%
AGATTCCTGTCGTATCTCTC+AGG - chr4_4:41044995-41045014 None:intergenic 45.0%
TCTTACTGAGGAAGTCCTCA+AGG + chr4_4:41045012-41045031 Msa0681090:CDS 45.0%
!! CAATCTTTGGAATGGCCTTG+AGG - chr4_4:41045030-41045049 None:intergenic 45.0%
ACGATTCTCCTCTGCTTGTT+GGG - chr4_4:41045309-41045328 None:intergenic 45.0%
TAATCAAGGAGGATGCAGCA+TGG - chr4_4:41045350-41045369 None:intergenic 45.0%
ATGCTGCATCCTCCTTGATT+AGG + chr4_4:41045349-41045368 Msa0681090:three_prime_UTR 45.0%
TGCCTAAGATGAAGTCTCCT+TGG + chr4_4:41045532-41045551 Msa0681090:three_prime_UTR 45.0%
GTCCAAGGAGACTTCATCTT+AGG - chr4_4:41045537-41045556 None:intergenic 45.0%
CGATAGATTCAAGACGTCCA+AGG - chr4_4:41045552-41045571 None:intergenic 45.0%
TGTGGCCGCCACTTATGTTA+GGG - chr4_4:41043182-41043201 None:intergenic 50.0%
GATAAACCCTAATGTCGGGG+CGG - chr4_4:41043205-41043224 None:intergenic 50.0%
TCATCTCCTCCTCATTCCTC+AGG + chr4_4:41043226-41043245 Msa0681090:five_prime_UTR 50.0%
GATGAACCTGAGGAATGAGG+AGG - chr4_4:41043235-41043254 None:intergenic 50.0%
CAAACTGGATCCCATGACCA+GGG - chr4_4:41043434-41043453 None:intergenic 50.0%
ACAAACTGGATCCCATGACC+AGG - chr4_4:41043435-41043454 None:intergenic 50.0%
TTGATCCTGCGACACAAGTC+AGG - chr4_4:41044578-41044597 None:intergenic 50.0%
ATGGACCAAGGCATATAGGC+GGG + chr4_4:41044810-41044829 Msa0681090:CDS 50.0%
ACAGACCTGAGAGATACGAC+AGG + chr4_4:41044987-41045006 Msa0681090:CDS 50.0%
TTGCTAAGATCCAAGCCAGC+AGG + chr4_4:41045047-41045066 Msa0681090:CDS 50.0%
TGCTAAGATCCAAGCCAGCA+GGG + chr4_4:41045048-41045067 Msa0681090:CDS 50.0%
GTGAATCACACCACGCTAAC+AGG + chr4_4:41045071-41045090 Msa0681090:CDS 50.0%
CTTCTTGCCGCTCATCCTAT+GGG - chr4_4:41045183-41045202 None:intergenic 50.0%
CACGATTCTCCTCTGCTTGT+TGG - chr4_4:41045310-41045329 None:intergenic 50.0%
AGCAGAGGAGAATCGTGTCA+TGG + chr4_4:41045313-41045332 Msa0681090:CDS 50.0%
TGTGGCCGCCACTTATGTTA+GGG - chr4_4:41043182-41043201 None:intergenic 50.0%
GATAAACCCTAATGTCGGGG+CGG - chr4_4:41043205-41043224 None:intergenic 50.0%
TCATCTCCTCCTCATTCCTC+AGG + chr4_4:41043226-41043245 Msa0681090:five_prime_UTR 50.0%
GATGAACCTGAGGAATGAGG+AGG - chr4_4:41043235-41043254 None:intergenic 50.0%
CAAACTGGATCCCATGACCA+GGG - chr4_4:41043434-41043453 None:intergenic 50.0%
ACAAACTGGATCCCATGACC+AGG - chr4_4:41043435-41043454 None:intergenic 50.0%
TTGATCCTGCGACACAAGTC+AGG - chr4_4:41044578-41044597 None:intergenic 50.0%
ATGGACCAAGGCATATAGGC+GGG + chr4_4:41044810-41044829 Msa0681090:CDS 50.0%
ACAGACCTGAGAGATACGAC+AGG + chr4_4:41044987-41045006 Msa0681090:CDS 50.0%
TTGCTAAGATCCAAGCCAGC+AGG + chr4_4:41045047-41045066 Msa0681090:CDS 50.0%
TGCTAAGATCCAAGCCAGCA+GGG + chr4_4:41045048-41045067 Msa0681090:CDS 50.0%
GTGAATCACACCACGCTAAC+AGG + chr4_4:41045071-41045090 Msa0681090:CDS 50.0%
CTTCTTGCCGCTCATCCTAT+GGG - chr4_4:41045183-41045202 None:intergenic 50.0%
CACGATTCTCCTCTGCTTGT+TGG - chr4_4:41045310-41045329 None:intergenic 50.0%
AGCAGAGGAGAATCGTGTCA+TGG + chr4_4:41045313-41045332 Msa0681090:CDS 50.0%
GTGTGGCCGCCACTTATGTT+AGG - chr4_4:41043183-41043202 None:intergenic 55.0%
! ACTTGCCTGACTTGTGTCGC+AGG + chr4_4:41044570-41044589 Msa0681090:intron 55.0%
AAGGCATATAGGCGGGTGCA+CGG + chr4_4:41044817-41044836 Msa0681090:CDS 55.0%
ATATAGGCGGGTGCACGGAA+AGG + chr4_4:41044822-41044841 Msa0681090:CDS 55.0%
GCACGGAAAGGACATGACAC+AGG + chr4_4:41044834-41044853 Msa0681090:CDS 55.0%
GCTAAGATCCAAGCCAGCAG+GGG + chr4_4:41045049-41045068 Msa0681090:CDS 55.0%
GCTTCTTGCCGCTCATCCTA+TGG - chr4_4:41045184-41045203 None:intergenic 55.0%
GATGAGCGGCAAGAAGCAGA+AGG + chr4_4:41045187-41045206 Msa0681090:CDS 55.0%
! CAAGAAGCAGAAGGTGCGGA+AGG + chr4_4:41045196-41045215 Msa0681090:CDS 55.0%
ACCGCCACCTTGATCTTCTC+CGG - chr4_4:41045284-41045303 None:intergenic 55.0%
GTGTGGCCGCCACTTATGTT+AGG - chr4_4:41043183-41043202 None:intergenic 55.0%
! ACTTGCCTGACTTGTGTCGC+AGG + chr4_4:41044570-41044589 Msa0681090:intron 55.0%
AAGGCATATAGGCGGGTGCA+CGG + chr4_4:41044817-41044836 Msa0681090:CDS 55.0%
ATATAGGCGGGTGCACGGAA+AGG + chr4_4:41044822-41044841 Msa0681090:CDS 55.0%
GCACGGAAAGGACATGACAC+AGG + chr4_4:41044834-41044853 Msa0681090:CDS 55.0%
GCTAAGATCCAAGCCAGCAG+GGG + chr4_4:41045049-41045068 Msa0681090:CDS 55.0%
GCTTCTTGCCGCTCATCCTA+TGG - chr4_4:41045184-41045203 None:intergenic 55.0%
GATGAGCGGCAAGAAGCAGA+AGG + chr4_4:41045187-41045206 Msa0681090:CDS 55.0%
! CAAGAAGCAGAAGGTGCGGA+AGG + chr4_4:41045196-41045215 Msa0681090:CDS 55.0%
ACCGCCACCTTGATCTTCTC+CGG - chr4_4:41045284-41045303 None:intergenic 55.0%
GTGCACCCGCCTATATGCCT+TGG - chr4_4:41044818-41044837 None:intergenic 60.0%
! GTGATTCACCCCTGCTGGCT+TGG - chr4_4:41045060-41045079 None:intergenic 60.0%
GTGGTGTGATTCACCCCTGC+TGG - chr4_4:41045065-41045084 None:intergenic 60.0%
GCGGCAAGAAGCAGAAGGTG+CGG + chr4_4:41045192-41045211 Msa0681090:CDS 60.0%
! GCAGAAGGTGCGGAAGGAAG+CGG + chr4_4:41045202-41045221 Msa0681090:CDS 60.0%
TCCATCTGCTGTGCTTGCGC+CGG + chr4_4:41045262-41045281 Msa0681090:CDS 60.0%
GCTTGCGCCGGAGAAGATCA+AGG + chr4_4:41045274-41045293 Msa0681090:CDS 60.0%
TGCGCCGGAGAAGATCAAGG+TGG + chr4_4:41045277-41045296 Msa0681090:CDS 60.0%
GCCGGAGAAGATCAAGGTGG+CGG + chr4_4:41045280-41045299 Msa0681090:CDS 60.0%
GGCGGTTTCCCAACAAGCAG+AGG + chr4_4:41045298-41045317 Msa0681090:CDS 60.0%
GTGCACCCGCCTATATGCCT+TGG - chr4_4:41044818-41044837 None:intergenic 60.0%
! GTGATTCACCCCTGCTGGCT+TGG - chr4_4:41045060-41045079 None:intergenic 60.0%
GTGGTGTGATTCACCCCTGC+TGG - chr4_4:41045065-41045084 None:intergenic 60.0%
GCGGCAAGAAGCAGAAGGTG+CGG + chr4_4:41045192-41045211 Msa0681090:CDS 60.0%
! GCAGAAGGTGCGGAAGGAAG+CGG + chr4_4:41045202-41045221 Msa0681090:CDS 60.0%
TCCATCTGCTGTGCTTGCGC+CGG + chr4_4:41045262-41045281 Msa0681090:CDS 60.0%
GCTTGCGCCGGAGAAGATCA+AGG + chr4_4:41045274-41045293 Msa0681090:CDS 60.0%
TGCGCCGGAGAAGATCAAGG+TGG + chr4_4:41045277-41045296 Msa0681090:CDS 60.0%
GCCGGAGAAGATCAAGGTGG+CGG + chr4_4:41045280-41045299 Msa0681090:CDS 60.0%
GGCGGTTTCCCAACAAGCAG+AGG + chr4_4:41045298-41045317 Msa0681090:CDS 60.0%
GCCACACCGCCCCGACATTA+GGG + chr4_4:41043196-41043215 Msa0681090:five_prime_UTR 65.0%
ACCCTAATGTCGGGGCGGTG+TGG - chr4_4:41043200-41043219 None:intergenic 65.0%
TCCGGCGCAAGCACAGCAGA+TGG - chr4_4:41045266-41045285 None:intergenic 65.0%
GCCACACCGCCCCGACATTA+GGG + chr4_4:41043196-41043215 Msa0681090:five_prime_UTR 65.0%
ACCCTAATGTCGGGGCGGTG+TGG - chr4_4:41043200-41043219 None:intergenic 65.0%
TCCGGCGCAAGCACAGCAGA+TGG - chr4_4:41045266-41045285 None:intergenic 65.0%
GGCCACACCGCCCCGACATT+AGG + chr4_4:41043195-41043214 Msa0681090:five_prime_UTR 70.0%
GGCCACACCGCCCCGACATT+AGG + chr4_4:41043195-41043214 Msa0681090:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 41043174 41045627 41043174 ID=Msa0681090;Name=Msa0681090
chr4_4 mRNA 41043174 41045627 41043174 ID=Msa0681090-mRNA-1;Parent=Msa0681090;Name=Msa0681090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=103|1|1|1|0.75|0.6|5|284|162
chr4_4 exon 41043174 41043247 41043174 ID=Msa0681090-mRNA-1:exon:9731;Parent=Msa0681090-mRNA-1
chr4_4 exon 41043361 41043470 41043361 ID=Msa0681090-mRNA-1:exon:9732;Parent=Msa0681090-mRNA-1
chr4_4 exon 41044742 41044855 41044742 ID=Msa0681090-mRNA-1:exon:9733;Parent=Msa0681090-mRNA-1
chr4_4 exon 41044956 41045092 41044956 ID=Msa0681090-mRNA-1:exon:9734;Parent=Msa0681090-mRNA-1
chr4_4 exon 41045187 41045627 41045187 ID=Msa0681090-mRNA-1:exon:9735;Parent=Msa0681090-mRNA-1
chr4_4 five_prime_UTR 41043174 41043247 41043174 ID=Msa0681090-mRNA-1:five_prime_utr;Parent=Msa0681090-mRNA-1
chr4_4 five_prime_UTR 41043361 41043389 41043361 ID=Msa0681090-mRNA-1:five_prime_utr;Parent=Msa0681090-mRNA-1
chr4_4 CDS 41043390 41043470 41043390 ID=Msa0681090-mRNA-1:cds;Parent=Msa0681090-mRNA-1
chr4_4 CDS 41044742 41044855 41044742 ID=Msa0681090-mRNA-1:cds;Parent=Msa0681090-mRNA-1
chr4_4 CDS 41044956 41045092 41044956 ID=Msa0681090-mRNA-1:cds;Parent=Msa0681090-mRNA-1
chr4_4 CDS 41045187 41045343 41045187 ID=Msa0681090-mRNA-1:cds;Parent=Msa0681090-mRNA-1
chr4_4 three_prime_UTR 41045344 41045627 41045344 ID=Msa0681090-mRNA-1:three_prime_utr;Parent=Msa0681090-mRNA-1
Gene Sequence

>Msa0681090

ATGAGATTAGAGAAGTGTTGGTTCTGTTCTTCTACTGTATACCCTGGTCATGGGATCCAGTTTGTTCGTAATGATGCTAAGATTTTTAGATTTTGTAGATCTAAGTGCCACAAGAACTTCAAAATGAAGAGGAATCCTCGGAAAGTAAAATGGACCAAGGCATATAGGCGGGTGCACGGAAAGGACATGACACAGGATTCAACCTTTGAGTTTGAGAGAAAACGCAACAGACCTGAGAGATACGACAGGAATCTTACTGAGGAAGTCCTCAAGGCCATTCCAAAGATTGCTAAGATCCAAGCCAGCAGGGGTGAATCACACCACGCTAACAGGATGAGCGGCAAGAAGCAGAAGGTGCGGAAGGAAGCGGCTAAAGAGTATGAGCAGAGCATCCATCTACTTAAAGCTCCATCTGCTGTGCTTGCGCCGGAGAAGATCAAGGTGGCGGTTTCCCAACAAGCAGAGGAGAATCGTGTCATGGAAGAGTGA
Protein sequence

>Msa0681090

MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLTEEVLKAIPKIAKIQASRGESHHANRMSGKKQKVRKEAAKEYEQSIHLLKAPSAVLAPEKIKVAVSQQAEENRVMEE*