AlfalfaGEDB | Msa0929790

M. sativa cultivar zhongmu-4 / Msa0929790

KEGG: K03248
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576
PFAM: PF12353.11

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0929790	XP_003631117.1	99.315	292	2	0	1	292	1	292	0.0	597

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0929790	sp\|Q6DRC4\|EIF3G_DANRE	41.584	303	145	10	4	289	3	290	4.48e-67	214

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa0929790	0.827783	1.292711e-54	-8.615850e-47
Msa0003330	Msa0929790	0.833619	4.804944e-56	-8.615850e-47
Msa0027590	Msa0929790	0.824163	9.364743e-54	-8.615850e-47
Msa0075350	Msa0929790	0.804476	2.121519e-49	-8.615850e-47
Msa0094210	Msa0929790	0.801913	7.195558e-49	-8.615850e-47
Msa0114570	Msa0929790	0.801918	7.178431e-49	-8.615850e-47
Msa0619230	Msa0929790	0.819760	9.803980e-53	-8.615850e-47
Msa0704860	Msa0929790	0.800690	1.280618e-48	-8.615850e-47
Msa0705800	Msa0929790	0.816491	5.381430e-52	-8.615850e-47
Msa0758420	Msa0929790	0.856929	2.306311e-62	-8.615850e-47
Msa0786650	Msa0929790	0.831394	1.711776e-55	-8.615850e-47
Msa0788380	Msa0929790	0.832055	1.175693e-55	-8.615850e-47
Msa0822580	Msa0929790	0.833580	4.914021e-56	-8.615850e-47
Msa0838070	Msa0929790	0.817493	3.204258e-52	-8.615850e-47
Msa0122550	Msa0929790	0.836340	9.911305e-57	-8.615850e-47
Msa0166970	Msa0929790	0.814076	1.851660e-51	-8.615850e-47
Msa0168320	Msa0929790	0.829767	4.281989e-55	-8.615850e-47
Msa0175000	Msa0929790	0.851572	8.134280e-61	-8.615850e-47
Msa0191450	Msa0929790	0.819757	9.823486e-53	-8.615850e-47
Msa0216200	Msa0929790	0.804529	2.068316e-49	-8.615850e-47
Msa0382670	Msa0929790	0.813716	2.223086e-51	-8.615850e-47
Msa0436750	Msa0929790	0.814529	1.471148e-51	-8.615850e-47
Msa0473570	Msa0929790	0.800511	1.392790e-48	-8.615850e-47
Msa0481520	Msa0929790	0.805846	1.096036e-49	-8.615850e-47
Msa0239420	Msa0929790	0.813377	2.639214e-51	-8.615850e-47
Msa0312890	Msa0929790	0.808330	3.266282e-50	-8.615850e-47
Msa0880050	Msa0929790	0.813843	2.084193e-51	-8.615850e-47
Msa0929790	Msa0930790	0.809463	1.868879e-50	-8.615850e-47
Msa0929790	Msa1041680	0.807663	4.527602e-50	-8.615850e-47
Msa0929790	Msa1082170	0.817886	2.612713e-52	-8.615850e-47
Msa0929790	Msa1124980	0.810525	1.103972e-50	-8.615850e-47
Msa0929790	Msa1166570	0.810476	1.131271e-50	-8.615850e-47
Msa0929790	Msa1167360	0.816589	5.115572e-52	-8.615850e-47
Msa0929790	Msa1218170	0.856883	2.380385e-62	-8.615850e-47
Msa0929790	Msa1236980	0.800710	1.268552e-48	-8.615850e-47
Msa0929790	Msa1278070	0.815400	9.425597e-52	-8.615850e-47
Msa0929790	Msa1286400	0.811144	8.106981e-51	-8.615850e-47
Msa0929790	Msa1390760	0.818789	1.631496e-52	-8.615850e-47
Msa0929790	Msa1423050	0.814718	1.336080e-51	-8.615850e-47
Msa0929790	Msa1463580	0.843146	1.676483e-58	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0929790	MtrunA17_Chr8g0393061	99.315	292	2	0	1	292	1	292	0.0	597
Msa0929790	MtrunA17_Chr8g0349601	76.289	291	56	3	3	292	2	280	2.43e-160	447
Msa0929790	MtrunA17_Chr5g0402101	50.000	110	52	2	185	292	107	215	3.44e-26	102
Msa0929790	MtrunA17_Chr4g0042151	38.462	78	48	0	213	290	46	123	3.72e-11	61.2
Msa0929790	MtrunA17_Chr8g0344491	42.857	77	44	0	212	288	148	224	5.24e-11	62.8
Msa0929790	MtrunA17_Chr1g0190351	36.842	76	48	0	215	290	318	393	7.16e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0929790	AT3G11400.1	72.973	296	74	5	1	292	1	294	8.41e-156	436
Msa0929790	AT3G11400.2	66.873	323	74	5	1	292	1	321	8.81e-151	425
Msa0929790	AT5G06000.1	64.626	294	93	6	1	291	1	286	1.45e-132	378
Msa0929790	AT1G54080.1	41.111	90	50	1	206	292	140	229	6.85e-12	65.9
Msa0929790	AT3G14100.1	41.111	90	50	1	206	292	136	225	1.05e-11	65.5
Msa0929790	AT1G54080.2	40.426	94	49	2	206	292	140	233	2.14e-11	64.3

Find 135 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCCAATGCTTAGGTTGTTCT+TGG	0.243434	6_2:+78608425	None:intergenic
CAATAAAGGTGCTGTTCTTA+TGG	0.252283	6_2:-78608900	Msa0929790:CDS
GCGCCGTTGAGCGCCGTTCC+TGG	0.290623	6_2:-78609356	Msa0929790:CDS
GTTGCAACAGATGCTGCTCC+TGG	0.291109	6_2:-78608782	Msa0929790:CDS
TTATGATAATCAGTATTATA+AGG	0.306122	6_2:-78608262	Msa0929790:three_prime_UTR
ATTCGATGATGATGGTAATA+AGG	0.312148	6_2:-78609436	Msa0929790:CDS
GACAGTGGGTCAGCAGTCTT+TGG	0.317010	6_2:+78608929	None:intergenic
GACTTCAAGGTGTCCATATA+AGG	0.326137	6_2:-78608843	Msa0929790:CDS
CGGAAAAGCTCAAGCAAATC+AGG	0.333826	6_2:+78608617	None:intergenic
ATCAACAAACTCAATGGATA+TGG	0.334085	6_2:-78608485	Msa0929790:CDS
CCAATGCTTAGGTTGTTCTT+GGG	0.335891	6_2:+78608426	None:intergenic
GTGATAGGTCCTGATGAAAA+TGG	0.346524	6_2:-78609483	Msa0929790:CDS
TCACCTGACGTGGTGGTAAC+AGG	0.357484	6_2:+78609502	None:intergenic
AAACAACAAACAGGCAGCTT+AGG	0.364621	6_2:-78609632	Msa0929790:five_prime_UTR
TTATGGTATGCAGGACTTGC+GGG	0.371975	6_2:-78608883	Msa0929790:CDS
GAAGCTAAGGTGGGGAGAAT+TGG	0.373757	6_2:-78609553	Msa0929790:CDS
GGAAGACGATGGCGAAGATC+TGG	0.395348	6_2:-78609529	Msa0929790:CDS
CCACTGTCTCAATTCAATAA+AGG	0.396074	6_2:-78608914	Msa0929790:CDS
GTTTACTCAAAATTACTTGT+TGG	0.406069	6_2:-78608236	Msa0929790:three_prime_UTR
CGTCGGTGCCCGCCTCACTA+TGG	0.408913	6_2:-78609304	Msa0929790:CDS
GCTTCAGCTGCCTCAGCAAA+GGG	0.410110	6_2:-78608758	Msa0929790:CDS
TGATAATAATTAGTATTATG+AGG	0.413976	6_2:-78608209	Msa0929790:three_prime_UTR
ACGCGCGTTGGCAAGTTTGC+GGG	0.418864	6_2:+78609389	None:intergenic
TCTGTTCTGTTCTGTTCCAC+TGG	0.425793	6_2:+78609661	None:intergenic
TTGCAACAGATGCTGCTCCT+GGG	0.430137	6_2:-78608781	Msa0929790:CDS
CGCCGTTCCTGGCCTAAGTT+CGG	0.430777	6_2:-78609345	Msa0929790:CDS
GGCTTCAGCTGCCTCAGCAA+AGG	0.431088	6_2:-78608759	Msa0929790:CDS
GGAGCAGCATCTGTTGCAAC+AGG	0.435145	6_2:+78608785	None:intergenic
ATGCAGGACTTGCGGGAAGA+AGG	0.440149	6_2:-78608876	Msa0929790:CDS
AGAACAAAGAAACAACAAAC+AGG	0.443471	6_2:-78609641	Msa0929790:five_prime_UTR
GACGCGCGTTGGCAAGTTTG+CGG	0.443758	6_2:+78609388	None:intergenic
ACTGGCATGAGTAGGGGCTT+TGG	0.446792	6_2:-78608548	Msa0929790:CDS
GCTTTGTGAACTTTGTTAGC+AGG	0.448198	6_2:-78608526	Msa0929790:CDS
TCCTCTCCGCACCAGCTCTC+AGG	0.449264	6_2:+78608717	None:intergenic
ATAATTAGTATTATGAGGAT+TGG	0.449313	6_2:-78608204	Msa0929790:three_prime_UTR
GGGTGGCCCATTCAACTCTC+AGG	0.454110	6_2:+78608447	None:intergenic
GCTGAGGCAGCTGAAGCCCC+AGG	0.456235	6_2:+78608764	None:intergenic
TATTATGAGGATTGGTTGCA+TGG	0.457193	6_2:-78608196	Msa0929790:three_prime_UTR
GAACGATGAGAATTCTGTTC+GGG	0.459314	6_2:-78608669	Msa0929790:CDS
TTTCCTGTTACCACCACGTC+AGG	0.468496	6_2:-78609505	Msa0929790:CDS
AACAACAAACAGGCAGCTTA+GGG	0.468649	6_2:-78609631	Msa0929790:five_prime_UTR
GGCTGTGCGAGATCCTTATA+TGG	0.469555	6_2:+78608830	None:intergenic
AGTCTTTGGATCCTCCTTGT+TGG	0.470984	6_2:+78608943	None:intergenic
GCTGGTGCGGAGAGGACTAC+TGG	0.480564	6_2:-78608710	Msa0929790:CDS
TGTTCTGTTCCACTGGTAAG+AGG	0.482314	6_2:+78609668	None:intergenic
CTGATGAAAATGGAATCAAA+AGG	0.493183	6_2:-78609473	Msa0929790:CDS
CCTTGTGTCCTCCGAGAGGT+TGG	0.493283	6_2:+78608643	None:intergenic
GGCGGCAATTCAGTCTGAAC+CGG	0.495287	6_2:-78609577	Msa0929790:CDS
TGCTTAGGTTGTTCTTGGGG+TGG	0.495372	6_2:+78608430	None:intergenic
TCTCATCCTGAGAGTTGAAT+GGG	0.497673	6_2:-78608453	Msa0929790:CDS
CCCAAGAACAACCTAAGCAT+TGG	0.499523	6_2:-78608426	Msa0929790:exon
GCGGGAAGAAGGGTGATCAT+TGG	0.499819	6_2:-78608865	Msa0929790:CDS
GTGCTGTTCTTATGGTATGC+AGG	0.503047	6_2:-78608892	Msa0929790:CDS
CTGAACCGGCGAAGCTAAGG+TGG	0.503185	6_2:-78609563	Msa0929790:CDS
CCAAGAACAACCTAAGCATT+GGG	0.503564	6_2:-78608425	Msa0929790:exon
ATCTCATCCTGAGAGTTGAA+TGG	0.503653	6_2:-78608454	Msa0929790:CDS
TCAAAAGACTGGCATGAGTA+GGG	0.504440	6_2:-78608555	Msa0929790:CDS
TTCAACACAAAGGAAATAGA+TGG	0.506863	6_2:+78608333	None:intergenic
TTACCACCACGTCAGGTGAT+AGG	0.508065	6_2:-78609498	Msa0929790:CDS
TCTCCCCACCTTAGCTTCGC+CGG	0.508727	6_2:+78609558	None:intergenic
TGCAGGACTTGCGGGAAGAA+GGG	0.508910	6_2:-78608875	Msa0929790:CDS
CTCAAGAGCACCCAATGCTT+AGG	0.508916	6_2:+78608415	None:intergenic
AAGAGGATGGATGACTGGAT+TGG	0.517939	6_2:+78609685	None:intergenic
GTTGCTATTGATCAAAAGAC+TGG	0.519323	6_2:-78608566	Msa0929790:CDS
CAATGCTTAGGTTGTTCTTG+GGG	0.520594	6_2:+78608427	None:intergenic
AGGGTGATCATTGGACTTCA+AGG	0.520801	6_2:-78608856	Msa0929790:CDS
CTCGAACGCCCCAAACCACT+TGG	0.521196	6_2:-78609261	Msa0929790:intron
AGGGCTATCAACAAACTCAA+TGG	0.522389	6_2:-78608491	Msa0929790:CDS
GAGTACAAATTCGATGATGA+TGG	0.524262	6_2:-78609444	Msa0929790:CDS
CTGGTAAGAGGATGGATGAC+TGG	0.526178	6_2:+78609680	None:intergenic
TCCGCACCAGCTCTCAGGCT+AGG	0.528088	6_2:+78608722	None:intergenic
GGTTTATCAACAAAAGTCTC+AGG	0.531499	6_2:+78608806	None:intergenic
TACTGACAGCACCAAAAGGC+CGG	0.531711	6_2:+78608597	None:intergenic
CTTATGGTATGCAGGACTTG+CGG	0.534636	6_2:-78608884	Msa0929790:CDS
CTTTGTGAACTTTGTTAGCA+GGG	0.538694	6_2:-78608525	Msa0929790:CDS
GGAACGATGAGAATTCTGTT+CGG	0.539699	6_2:-78608670	Msa0929790:CDS
GCGTTCGAGAAGGATCTCTT+CGG	0.539858	6_2:+78609275	None:intergenic
TGCAACAGATGCTGCTCCTG+GGG	0.541734	6_2:-78608780	Msa0929790:CDS
GAAATAGATGGTCCTGAACT+CGG	0.544141	6_2:+78608345	None:intergenic
GGCGTCTCCGAACTTAGGCC+AGG	0.544227	6_2:+78609338	None:intergenic
GCTAAGGTGGGGAGAATTGG+AGG	0.546676	6_2:-78609550	Msa0929790:CDS
TGATGAAAATGGAATCAAAA+GGG	0.546960	6_2:-78609472	Msa0929790:CDS
GGCAAGTTTGCGGGTTCGAG+TGG	0.547824	6_2:+78609398	None:intergenic
AGTCTGAACCGGCGAAGCTA+AGG	0.552460	6_2:-78609566	Msa0929790:CDS
GGCACCGACGTCTTCATGAA+CGG	0.554768	6_2:+78609317	None:intergenic
ACCCTACTGACAGCACCAAA+AGG	0.555974	6_2:+78608593	None:intergenic
AGGCCAGGAACGGCGCTCAA+CGG	0.556345	6_2:+78609353	None:intergenic
GCGTTTGCTGAGACGCGCGT+TGG	0.556548	6_2:+78609377	None:intergenic
CCAACCTCTCGGAGGACACA+AGG	0.558509	6_2:-78608643	Msa0929790:CDS
GGTGGAAACCATAGTGAGGC+GGG	0.568445	6_2:+78609296	None:intergenic
GTGGTTTGGGGCGTTCGAGA+AGG	0.575414	6_2:+78609265	None:intergenic
CTCCGAACTTAGGCCAGGAA+CGG	0.576631	6_2:+78609343	None:intergenic
ATCAAAAGACTGGCATGAGT+AGG	0.579916	6_2:-78608556	Msa0929790:CDS
TCCTAGCCTGAGAGCTGGTG+CGG	0.588822	6_2:-78608723	Msa0929790:CDS
TGGTTGCATGGTTCACGAGG+TGG	0.596153	6_2:-78608184	Msa0929790:three_prime_UTR
AGACTTCCGGAGATAAGAGA+GGG	0.599062	6_2:+78608383	None:intergenic
TGAACGGCGTCTCCGAACTT+AGG	0.601313	6_2:+78609333	None:intergenic
CTTTATTGAATTGAGACAGT+GGG	0.603664	6_2:+78608915	None:intergenic
CTGGCTCTGACATGAGGCGG+AGG	0.610847	6_2:-78608691	Msa0929790:CDS
GTACCTCCTAGCCTGAGAGC+TGG	0.611149	6_2:-78608728	Msa0929790:CDS
CAAAAGACTGGCATGAGTAG+GGG	0.615375	6_2:-78608554	Msa0929790:CDS
TGAACCGGCGAAGCTAAGGT+GGG	0.616663	6_2:-78609562	Msa0929790:CDS
CTGTTCCACTGGTAAGAGGA+TGG	0.618160	6_2:+78609672	None:intergenic
GCCTGAGAGCTGGTGCGGAG+AGG	0.623849	6_2:-78608718	Msa0929790:CDS
TACATATGCACCCTTTGCTG+AGG	0.623928	6_2:+78608748	None:intergenic
TAGCAGGGAAGATGCTCAGA+GGG	0.624825	6_2:-78608510	Msa0929790:CDS
TTCGAGAAGGATCTCTTCGG+TGG	0.624825	6_2:+78609278	None:intergenic
CAACCTCTCGGAGGACACAA+GGG	0.627480	6_2:-78608642	Msa0929790:CDS
GTCATCCATCCTCTTACCAG+TGG	0.628434	6_2:-78609677	Msa0929790:five_prime_UTR
CGGTGGAAACCATAGTGAGG+CGG	0.629968	6_2:+78609295	None:intergenic
GGACTACTGGCTCTGACATG+AGG	0.632778	6_2:-78608697	Msa0929790:CDS
TGTTCGGGTAACCAACCTCT+CGG	0.633411	6_2:-78608654	Msa0929790:CDS
AATCTAATCAGACATGGCGG+CGG	0.647531	6_2:-78609595	Msa0929790:exon
GATTGGTTGCATGGTTCACG+AGG	0.650928	6_2:-78608187	Msa0929790:three_prime_UTR
TCTTCTAATCTAATCAGACA+TGG	0.651706	6_2:-78609601	Msa0929790:exon
GCACCAGCTCTCAGGCTAGG+AGG	0.652161	6_2:+78608725	None:intergenic
AATAATACAATTCAACACAA+AGG	0.653042	6_2:+78608323	None:intergenic
GAACCGGCGAAGCTAAGGTG+GGG	0.653069	6_2:-78609561	Msa0929790:CDS
TAGACTTCCGGAGATAAGAG+AGG	0.655809	6_2:+78608382	None:intergenic
CCTTTATTGAATTGAGACAG+TGG	0.657041	6_2:+78608914	None:intergenic
CTACTGGCTCTGACATGAGG+CGG	0.663022	6_2:-78608694	Msa0929790:CDS
GCTCCCTTGTGTCCTCCGAG+AGG	0.679337	6_2:+78608639	None:intergenic
GGACCTATCACCTGACGTGG+TGG	0.679711	6_2:+78609495	None:intergenic
TTATCAACAAAAGTCTCAGG+CGG	0.681859	6_2:+78608809	None:intergenic
TTAGCAGGGAAGATGCTCAG+AGG	0.686366	6_2:-78608511	Msa0929790:CDS
ATCAACAACAGGTTCCAACA+AGG	0.686562	6_2:-78608957	Msa0929790:intron
GGAGAATTGGAGGAAGACGA+TGG	0.696314	6_2:-78609540	Msa0929790:CDS
TCAGGACCTATCACCTGACG+TGG	0.706707	6_2:+78609492	None:intergenic
AACAACAGGTTCCAACAAGG+AGG	0.706807	6_2:-78608954	Msa0929790:intron
CTTCGGTGGAAACCATAGTG+AGG	0.709928	6_2:+78609292	None:intergenic
ACTTCCGGAGATAAGAGAGG+GGG	0.712733	6_2:+78608385	None:intergenic
GACTTCCGGAGATAAGAGAG+GGG	0.719181	6_2:+78608384	None:intergenic
TCGGGTAACCAACCTCTCGG+AGG	0.730211	6_2:-78608651	Msa0929790:CDS
GACGCCGTTCATGAAGACGT+CGG	0.745318	6_2:-78609321	Msa0929790:CDS
TCTAATCTAATCAGACATGG+CGG	0.748948	6_2:-78609598	Msa0929790:exon

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTATGATAATCAGTATTATA+AGG	-	chr6_2:78609586-78609605	Msa0929790:exon	15.0%
!!	TGATAATAATTAGTATTATG+AGG	-	chr6_2:78609639-78609658	Msa0929790:five_prime_UTR	15.0%
!!	TTATGATAATCAGTATTATA+AGG	-	chr6_2:78609586-78609605	Msa0929790:exon	15.0%
!!	TGATAATAATTAGTATTATG+AGG	-	chr6_2:78609639-78609658	Msa0929790:five_prime_UTR	15.0%
!!	AATAATACAATTCAACACAA+AGG	+	chr6_2:78609528-78609547	None:intergenic	20.0%
!!	ATAATTAGTATTATGAGGAT+TGG	-	chr6_2:78609644-78609663	Msa0929790:five_prime_UTR	20.0%
!!!	CATTCTTTGATTTTTATACT+GGG	-	chr6_2:78609687-78609706	Msa0929790:five_prime_UTR	20.0%
!!	AATAATACAATTCAACACAA+AGG	+	chr6_2:78609528-78609547	None:intergenic	20.0%
!!	ATAATTAGTATTATGAGGAT+TGG	-	chr6_2:78609644-78609663	Msa0929790:five_prime_UTR	20.0%
!!!	CATTCTTTGATTTTTATACT+GGG	-	chr6_2:78609687-78609706	Msa0929790:five_prime_UTR	20.0%
!	TGATGAAAATGGAATCAAAA+GGG	-	chr6_2:78608376-78608395	Msa0929790:three_prime_UTR	25.0%
!!	GTAATTCATCATCTAAAGTA+AGG	+	chr6_2:78608760-78608779	None:intergenic	25.0%
!	TACTTTAGATGATGAATTAC+TGG	-	chr6_2:78608760-78608779	Msa0929790:CDS	25.0%
!	ACTTTAGATGATGAATTACT+GGG	-	chr6_2:78608761-78608780	Msa0929790:CDS	25.0%
!	GTTTACTCAAAATTACTTGT+TGG	-	chr6_2:78609612-78609631	Msa0929790:five_prime_UTR	25.0%
!!!	GCATTCTTTGATTTTTATAC+TGG	-	chr6_2:78609686-78609705	Msa0929790:five_prime_UTR	25.0%
!	TGATGAAAATGGAATCAAAA+GGG	-	chr6_2:78608376-78608395	Msa0929790:three_prime_UTR	25.0%
!!	GTAATTCATCATCTAAAGTA+AGG	+	chr6_2:78608760-78608779	None:intergenic	25.0%
!	TACTTTAGATGATGAATTAC+TGG	-	chr6_2:78608760-78608779	Msa0929790:CDS	25.0%
!	ACTTTAGATGATGAATTACT+GGG	-	chr6_2:78608761-78608780	Msa0929790:CDS	25.0%
!	GTTTACTCAAAATTACTTGT+TGG	-	chr6_2:78609612-78609631	Msa0929790:five_prime_UTR	25.0%
!!!	GCATTCTTTGATTTTTATAC+TGG	-	chr6_2:78609686-78609705	Msa0929790:five_prime_UTR	25.0%
	AGAACAAAGAAACAACAAAC+AGG	-	chr6_2:78608207-78608226	Msa0929790:three_prime_UTR	30.0%
	TCTTCTAATCTAATCAGACA+TGG	-	chr6_2:78608247-78608266	Msa0929790:three_prime_UTR	30.0%
!!	CTTTTGATTCCATTTTCATC+AGG	+	chr6_2:78608377-78608396	None:intergenic	30.0%
	CTGATGAAAATGGAATCAAA+AGG	-	chr6_2:78608375-78608394	Msa0929790:three_prime_UTR	30.0%
!!	ATTCGATGATGATGGTAATA+AGG	-	chr6_2:78608412-78608431	Msa0929790:three_prime_UTR	30.0%
!!	TAAAGAGAAAAAGTACCAAG+TGG	+	chr6_2:78608605-78608624	None:intergenic	30.0%
!	TTCATCATCTAAAGTAAGGA+AGG	+	chr6_2:78608756-78608775	None:intergenic	30.0%
	CTTTATTGAATTGAGACAGT+GGG	+	chr6_2:78608936-78608955	None:intergenic	30.0%
	ATCAACAAACTCAATGGATA+TGG	-	chr6_2:78609363-78609382	Msa0929790:CDS	30.0%
	TTCAACACAAAGGAAATAGA+TGG	+	chr6_2:78609518-78609537	None:intergenic	30.0%
	AGAACAAAGAAACAACAAAC+AGG	-	chr6_2:78608207-78608226	Msa0929790:three_prime_UTR	30.0%
	TCTTCTAATCTAATCAGACA+TGG	-	chr6_2:78608247-78608266	Msa0929790:three_prime_UTR	30.0%
!!	CTTTTGATTCCATTTTCATC+AGG	+	chr6_2:78608377-78608396	None:intergenic	30.0%
	CTGATGAAAATGGAATCAAA+AGG	-	chr6_2:78608375-78608394	Msa0929790:three_prime_UTR	30.0%
!!	ATTCGATGATGATGGTAATA+AGG	-	chr6_2:78608412-78608431	Msa0929790:three_prime_UTR	30.0%
!!	TAAAGAGAAAAAGTACCAAG+TGG	+	chr6_2:78608605-78608624	None:intergenic	30.0%
!	TTCATCATCTAAAGTAAGGA+AGG	+	chr6_2:78608756-78608775	None:intergenic	30.0%
	CTTTATTGAATTGAGACAGT+GGG	+	chr6_2:78608936-78608955	None:intergenic	30.0%
	ATCAACAAACTCAATGGATA+TGG	-	chr6_2:78609363-78609382	Msa0929790:CDS	30.0%
	TTCAACACAAAGGAAATAGA+TGG	+	chr6_2:78609518-78609537	None:intergenic	30.0%
!!	GATGACTGGATTGGATTTTT+GGG	+	chr6_2:78608157-78608176	None:intergenic	35.0%
	TCTAATCTAATCAGACATGG+CGG	-	chr6_2:78608250-78608269	Msa0929790:three_prime_UTR	35.0%
	GAGTACAAATTCGATGATGA+TGG	-	chr6_2:78608404-78608423	Msa0929790:three_prime_UTR	35.0%
!!	AAAAAGTACCAAGTGGTTTG+GGG	+	chr6_2:78608598-78608617	None:intergenic	35.0%
!!	GAAAAAGTACCAAGTGGTTT+GGG	+	chr6_2:78608599-78608618	None:intergenic	35.0%
!!	AGAAAAAGTACCAAGTGGTT+TGG	+	chr6_2:78608600-78608619	None:intergenic	35.0%
	CACAATCACACAAGAATGTT+CGG	-	chr6_2:78608711-78608730	Msa0929790:CDS	35.0%
	ATGCTACAATAGACTAGACT+AGG	+	chr6_2:78608842-78608861	None:intergenic	35.0%
	TCATGATCTGTATCAACAAC+AGG	-	chr6_2:78608880-78608899	Msa0929790:CDS	35.0%
	CCTTTATTGAATTGAGACAG+TGG	+	chr6_2:78608937-78608956	None:intergenic	35.0%
	CCACTGTCTCAATTCAATAA+AGG	-	chr6_2:78608934-78608953	Msa0929790:CDS	35.0%
!!	CAATAAAGGTGCTGTTCTTA+TGG	-	chr6_2:78608948-78608967	Msa0929790:CDS	35.0%
	TTATCAACAAAAGTCTCAGG+CGG	+	chr6_2:78609042-78609061	None:intergenic	35.0%
	GGTTTATCAACAAAAGTCTC+AGG	+	chr6_2:78609045-78609064	None:intergenic	35.0%
!	GTTGCTATTGATCAAAAGAC+TGG	-	chr6_2:78609282-78609301	Msa0929790:CDS	35.0%
	CTTTGTGAACTTTGTTAGCA+GGG	-	chr6_2:78609323-78609342	Msa0929790:CDS	35.0%
	TACAAAAACTGGTAGACTTC+CGG	+	chr6_2:78609481-78609500	None:intergenic	35.0%
	TGAACTCGGATTACAAAAAC+TGG	+	chr6_2:78609492-78609511	None:intergenic	35.0%
!	AGTTTTTGTAATCCGAGTTC+AGG	-	chr6_2:78609491-78609510	Msa0929790:CDS	35.0%
!	GTTTTCTCAAGATCACTTGT+TGG	-	chr6_2:78609559-78609578	Msa0929790:CDS	35.0%
!!	TATTATGAGGATTGGTTGCA+TGG	-	chr6_2:78609652-78609671	Msa0929790:five_prime_UTR	35.0%
!!	GATGACTGGATTGGATTTTT+GGG	+	chr6_2:78608157-78608176	None:intergenic	35.0%
	TCTAATCTAATCAGACATGG+CGG	-	chr6_2:78608250-78608269	Msa0929790:three_prime_UTR	35.0%
	GAGTACAAATTCGATGATGA+TGG	-	chr6_2:78608404-78608423	Msa0929790:three_prime_UTR	35.0%
!!	AAAAAGTACCAAGTGGTTTG+GGG	+	chr6_2:78608598-78608617	None:intergenic	35.0%
!!	GAAAAAGTACCAAGTGGTTT+GGG	+	chr6_2:78608599-78608618	None:intergenic	35.0%
!!	AGAAAAAGTACCAAGTGGTT+TGG	+	chr6_2:78608600-78608619	None:intergenic	35.0%
	CACAATCACACAAGAATGTT+CGG	-	chr6_2:78608711-78608730	Msa0929790:CDS	35.0%
	ATGCTACAATAGACTAGACT+AGG	+	chr6_2:78608842-78608861	None:intergenic	35.0%
	TCATGATCTGTATCAACAAC+AGG	-	chr6_2:78608880-78608899	Msa0929790:CDS	35.0%
	CCTTTATTGAATTGAGACAG+TGG	+	chr6_2:78608937-78608956	None:intergenic	35.0%
	CCACTGTCTCAATTCAATAA+AGG	-	chr6_2:78608934-78608953	Msa0929790:CDS	35.0%
!!	CAATAAAGGTGCTGTTCTTA+TGG	-	chr6_2:78608948-78608967	Msa0929790:CDS	35.0%
	TTATCAACAAAAGTCTCAGG+CGG	+	chr6_2:78609042-78609061	None:intergenic	35.0%
	GGTTTATCAACAAAAGTCTC+AGG	+	chr6_2:78609045-78609064	None:intergenic	35.0%
!	GTTGCTATTGATCAAAAGAC+TGG	-	chr6_2:78609282-78609301	Msa0929790:CDS	35.0%
	CTTTGTGAACTTTGTTAGCA+GGG	-	chr6_2:78609323-78609342	Msa0929790:CDS	35.0%
	TACAAAAACTGGTAGACTTC+CGG	+	chr6_2:78609481-78609500	None:intergenic	35.0%
	TGAACTCGGATTACAAAAAC+TGG	+	chr6_2:78609492-78609511	None:intergenic	35.0%
!	AGTTTTTGTAATCCGAGTTC+AGG	-	chr6_2:78609491-78609510	Msa0929790:CDS	35.0%
!	GTTTTCTCAAGATCACTTGT+TGG	-	chr6_2:78609559-78609578	Msa0929790:CDS	35.0%
!!	TATTATGAGGATTGGTTGCA+TGG	-	chr6_2:78609652-78609671	Msa0929790:five_prime_UTR	35.0%
!!	GGATGACTGGATTGGATTTT+TGG	+	chr6_2:78608158-78608177	None:intergenic	40.0%
	AAACAACAAACAGGCAGCTT+AGG	-	chr6_2:78608216-78608235	Msa0929790:three_prime_UTR	40.0%
	AACAACAAACAGGCAGCTTA+GGG	-	chr6_2:78608217-78608236	Msa0929790:three_prime_UTR	40.0%
	GTGATAGGTCCTGATGAAAA+TGG	-	chr6_2:78608365-78608384	Msa0929790:three_prime_UTR	40.0%
	ATCAACAACAGGTTCCAACA+AGG	-	chr6_2:78608891-78608910	Msa0929790:CDS	40.0%
!	GACTTCAAGGTGTCCATATA+AGG	-	chr6_2:78609005-78609024	Msa0929790:intron	40.0%
	GGAACGATGAGAATTCTGTT+CGG	-	chr6_2:78609178-78609197	Msa0929790:intron	40.0%
	GAACGATGAGAATTCTGTTC+GGG	-	chr6_2:78609179-78609198	Msa0929790:intron	40.0%
!!!	CTGATTTGCTTGAGCTTTTC+CGG	-	chr6_2:78609232-78609251	Msa0929790:intron	40.0%
	ATCAAAAGACTGGCATGAGT+AGG	-	chr6_2:78609292-78609311	Msa0929790:CDS	40.0%
	TCAAAAGACTGGCATGAGTA+GGG	-	chr6_2:78609293-78609312	Msa0929790:CDS	40.0%
	GCTTTGTGAACTTTGTTAGC+AGG	-	chr6_2:78609322-78609341	Msa0929790:CDS	40.0%
	AGGGCTATCAACAAACTCAA+TGG	-	chr6_2:78609357-78609376	Msa0929790:CDS	40.0%
	ATCTCATCCTGAGAGTTGAA+TGG	-	chr6_2:78609394-78609413	Msa0929790:CDS	40.0%
	TCTCATCCTGAGAGTTGAAT+GGG	-	chr6_2:78609395-78609414	Msa0929790:CDS	40.0%
!	CAATGCTTAGGTTGTTCTTG+GGG	+	chr6_2:78609424-78609443	None:intergenic	40.0%
!	CCAATGCTTAGGTTGTTCTT+GGG	+	chr6_2:78609425-78609444	None:intergenic	40.0%
	CCAAGAACAACCTAAGCATT+GGG	-	chr6_2:78609423-78609442	Msa0929790:CDS	40.0%
	GAAATAGATGGTCCTGAACT+CGG	+	chr6_2:78609506-78609525	None:intergenic	40.0%
!!	GGATGACTGGATTGGATTTT+TGG	+	chr6_2:78608158-78608177	None:intergenic	40.0%
	AAACAACAAACAGGCAGCTT+AGG	-	chr6_2:78608216-78608235	Msa0929790:three_prime_UTR	40.0%
	AACAACAAACAGGCAGCTTA+GGG	-	chr6_2:78608217-78608236	Msa0929790:three_prime_UTR	40.0%
	GTGATAGGTCCTGATGAAAA+TGG	-	chr6_2:78608365-78608384	Msa0929790:three_prime_UTR	40.0%
	ATCAACAACAGGTTCCAACA+AGG	-	chr6_2:78608891-78608910	Msa0929790:CDS	40.0%
!	GACTTCAAGGTGTCCATATA+AGG	-	chr6_2:78609005-78609024	Msa0929790:intron	40.0%
	GGAACGATGAGAATTCTGTT+CGG	-	chr6_2:78609178-78609197	Msa0929790:intron	40.0%
	GAACGATGAGAATTCTGTTC+GGG	-	chr6_2:78609179-78609198	Msa0929790:intron	40.0%
!!!	CTGATTTGCTTGAGCTTTTC+CGG	-	chr6_2:78609232-78609251	Msa0929790:intron	40.0%
	ATCAAAAGACTGGCATGAGT+AGG	-	chr6_2:78609292-78609311	Msa0929790:CDS	40.0%
	TCAAAAGACTGGCATGAGTA+GGG	-	chr6_2:78609293-78609312	Msa0929790:CDS	40.0%
	GCTTTGTGAACTTTGTTAGC+AGG	-	chr6_2:78609322-78609341	Msa0929790:CDS	40.0%
	AGGGCTATCAACAAACTCAA+TGG	-	chr6_2:78609357-78609376	Msa0929790:CDS	40.0%
	ATCTCATCCTGAGAGTTGAA+TGG	-	chr6_2:78609394-78609413	Msa0929790:CDS	40.0%
	TCTCATCCTGAGAGTTGAAT+GGG	-	chr6_2:78609395-78609414	Msa0929790:CDS	40.0%
!	CAATGCTTAGGTTGTTCTTG+GGG	+	chr6_2:78609424-78609443	None:intergenic	40.0%
!	CCAATGCTTAGGTTGTTCTT+GGG	+	chr6_2:78609425-78609444	None:intergenic	40.0%
	CCAAGAACAACCTAAGCATT+GGG	-	chr6_2:78609423-78609442	Msa0929790:CDS	40.0%
	GAAATAGATGGTCCTGAACT+CGG	+	chr6_2:78609506-78609525	None:intergenic	40.0%
	AAGAGGATGGATGACTGGAT+TGG	+	chr6_2:78608166-78608185	None:intergenic	45.0%
	TGTTCTGTTCCACTGGTAAG+AGG	+	chr6_2:78608183-78608202	None:intergenic	45.0%
	TCTGTTCTGTTCTGTTCCAC+TGG	+	chr6_2:78608190-78608209	None:intergenic	45.0%
	AATCTAATCAGACATGGCGG+CGG	-	chr6_2:78608253-78608272	Msa0929790:three_prime_UTR	45.0%
!	AGACTAGTTATCTAGCGACC+AGG	-	chr6_2:78608681-78608700	Msa0929790:CDS	45.0%
!	GACTAGTTATCTAGCGACCA+GGG	-	chr6_2:78608682-78608701	Msa0929790:CDS	45.0%
	ACTAGTTATCTAGCGACCAG+GGG	-	chr6_2:78608683-78608702	Msa0929790:CDS	45.0%
	GTGTGATTGTGTAAATCCCC+TGG	+	chr6_2:78608702-78608721	None:intergenic	45.0%
	AACAACAGGTTCCAACAAGG+AGG	-	chr6_2:78608894-78608913	Msa0929790:CDS	45.0%
	AGTCTTTGGATCCTCCTTGT+TGG	+	chr6_2:78608908-78608927	None:intergenic	45.0%
!	GTGCTGTTCTTATGGTATGC+AGG	-	chr6_2:78608956-78608975	Msa0929790:intron	45.0%
	CTTATGGTATGCAGGACTTG+CGG	-	chr6_2:78608964-78608983	Msa0929790:intron	45.0%
	TTATGGTATGCAGGACTTGC+GGG	-	chr6_2:78608965-78608984	Msa0929790:intron	45.0%
	AGGGTGATCATTGGACTTCA+AGG	-	chr6_2:78608992-78609011	Msa0929790:intron	45.0%
	TACATATGCACCCTTTGCTG+AGG	+	chr6_2:78609103-78609122	None:intergenic	45.0%
	CGGAAAAGCTCAAGCAAATC+AGG	+	chr6_2:78609234-78609253	None:intergenic	45.0%
	CAAAAGACTGGCATGAGTAG+GGG	-	chr6_2:78609294-78609313	Msa0929790:CDS	45.0%
	CCCAAGAACAACCTAAGCAT+TGG	-	chr6_2:78609422-78609441	Msa0929790:CDS	45.0%
!	CCCAATGCTTAGGTTGTTCT+TGG	+	chr6_2:78609426-78609445	None:intergenic	45.0%
	AGACTTCCGGAGATAAGAGA+GGG	+	chr6_2:78609468-78609487	None:intergenic	45.0%
	TAGACTTCCGGAGATAAGAG+AGG	+	chr6_2:78609469-78609488	None:intergenic	45.0%
	AAGAGGATGGATGACTGGAT+TGG	+	chr6_2:78608166-78608185	None:intergenic	45.0%
	TGTTCTGTTCCACTGGTAAG+AGG	+	chr6_2:78608183-78608202	None:intergenic	45.0%
	TCTGTTCTGTTCTGTTCCAC+TGG	+	chr6_2:78608190-78608209	None:intergenic	45.0%
	AATCTAATCAGACATGGCGG+CGG	-	chr6_2:78608253-78608272	Msa0929790:three_prime_UTR	45.0%
!	AGACTAGTTATCTAGCGACC+AGG	-	chr6_2:78608681-78608700	Msa0929790:CDS	45.0%
!	GACTAGTTATCTAGCGACCA+GGG	-	chr6_2:78608682-78608701	Msa0929790:CDS	45.0%
	ACTAGTTATCTAGCGACCAG+GGG	-	chr6_2:78608683-78608702	Msa0929790:CDS	45.0%
	GTGTGATTGTGTAAATCCCC+TGG	+	chr6_2:78608702-78608721	None:intergenic	45.0%
	AACAACAGGTTCCAACAAGG+AGG	-	chr6_2:78608894-78608913	Msa0929790:CDS	45.0%
	AGTCTTTGGATCCTCCTTGT+TGG	+	chr6_2:78608908-78608927	None:intergenic	45.0%
!	GTGCTGTTCTTATGGTATGC+AGG	-	chr6_2:78608956-78608975	Msa0929790:intron	45.0%
	CTTATGGTATGCAGGACTTG+CGG	-	chr6_2:78608964-78608983	Msa0929790:intron	45.0%
	TTATGGTATGCAGGACTTGC+GGG	-	chr6_2:78608965-78608984	Msa0929790:intron	45.0%
	AGGGTGATCATTGGACTTCA+AGG	-	chr6_2:78608992-78609011	Msa0929790:intron	45.0%
	TACATATGCACCCTTTGCTG+AGG	+	chr6_2:78609103-78609122	None:intergenic	45.0%
	CGGAAAAGCTCAAGCAAATC+AGG	+	chr6_2:78609234-78609253	None:intergenic	45.0%
	CAAAAGACTGGCATGAGTAG+GGG	-	chr6_2:78609294-78609313	Msa0929790:CDS	45.0%
	CCCAAGAACAACCTAAGCAT+TGG	-	chr6_2:78609422-78609441	Msa0929790:CDS	45.0%
!	CCCAATGCTTAGGTTGTTCT+TGG	+	chr6_2:78609426-78609445	None:intergenic	45.0%
	AGACTTCCGGAGATAAGAGA+GGG	+	chr6_2:78609468-78609487	None:intergenic	45.0%
	TAGACTTCCGGAGATAAGAG+AGG	+	chr6_2:78609469-78609488	None:intergenic	45.0%
	CTGGTAAGAGGATGGATGAC+TGG	+	chr6_2:78608171-78608190	None:intergenic	50.0%
	GTCATCCATCCTCTTACCAG+TGG	-	chr6_2:78608171-78608190	Msa0929790:three_prime_UTR	50.0%
	CTGTTCCACTGGTAAGAGGA+TGG	+	chr6_2:78608179-78608198	None:intergenic	50.0%
	GAAGCTAAGGTGGGGAGAAT+TGG	-	chr6_2:78608295-78608314	Msa0929790:three_prime_UTR	50.0%
	GGAGAATTGGAGGAAGACGA+TGG	-	chr6_2:78608308-78608327	Msa0929790:three_prime_UTR	50.0%
	TTTCCTGTTACCACCACGTC+AGG	-	chr6_2:78608343-78608362	Msa0929790:three_prime_UTR	50.0%
	TTACCACCACGTCAGGTGAT+AGG	-	chr6_2:78608350-78608369	Msa0929790:three_prime_UTR	50.0%
	CTTCGGTGGAAACCATAGTG+AGG	+	chr6_2:78608559-78608578	None:intergenic	50.0%
	TTCGAGAAGGATCTCTTCGG+TGG	+	chr6_2:78608573-78608592	None:intergenic	50.0%
	GCGTTCGAGAAGGATCTCTT+CGG	+	chr6_2:78608576-78608595	None:intergenic	50.0%
	GGCTGTGCGAGATCCTTATA+TGG	+	chr6_2:78609021-78609040	None:intergenic	50.0%
	TTGCAACAGATGCTGCTCCT+GGG	-	chr6_2:78609067-78609086	Msa0929790:intron	50.0%
	TGTTCGGGTAACCAACCTCT+CGG	-	chr6_2:78609194-78609213	Msa0929790:intron	50.0%
!	CTTGAGCTTTTCCGGCCTTT+TGG	-	chr6_2:78609240-78609259	Msa0929790:intron	50.0%
	TACTGACAGCACCAAAAGGC+CGG	+	chr6_2:78609254-78609273	None:intergenic	50.0%
!!!	GCCTTTTGGTGCTGTCAGTA+GGG	-	chr6_2:78609254-78609273	Msa0929790:intron	50.0%
	ACCCTACTGACAGCACCAAA+AGG	+	chr6_2:78609258-78609277	None:intergenic	50.0%
	TTAGCAGGGAAGATGCTCAG+AGG	-	chr6_2:78609337-78609356	Msa0929790:CDS	50.0%
	TAGCAGGGAAGATGCTCAGA+GGG	-	chr6_2:78609338-78609357	Msa0929790:CDS	50.0%
!	TGCTTAGGTTGTTCTTGGGG+TGG	+	chr6_2:78609421-78609440	None:intergenic	50.0%
!!	CTCAAGAGCACCCAATGCTT+AGG	+	chr6_2:78609436-78609455	None:intergenic	50.0%
	TTTGCCCCCTCTCTTATCTC+CGG	-	chr6_2:78609459-78609478	Msa0929790:CDS	50.0%
	ACTTCCGGAGATAAGAGAGG+GGG	+	chr6_2:78609466-78609485	None:intergenic	50.0%
	GACTTCCGGAGATAAGAGAG+GGG	+	chr6_2:78609467-78609486	None:intergenic	50.0%
!	GATTGGTTGCATGGTTCACG+AGG	-	chr6_2:78609661-78609680	Msa0929790:five_prime_UTR	50.0%
	CTGGTAAGAGGATGGATGAC+TGG	+	chr6_2:78608171-78608190	None:intergenic	50.0%
	GTCATCCATCCTCTTACCAG+TGG	-	chr6_2:78608171-78608190	Msa0929790:three_prime_UTR	50.0%
	CTGTTCCACTGGTAAGAGGA+TGG	+	chr6_2:78608179-78608198	None:intergenic	50.0%
	GAAGCTAAGGTGGGGAGAAT+TGG	-	chr6_2:78608295-78608314	Msa0929790:three_prime_UTR	50.0%
	GGAGAATTGGAGGAAGACGA+TGG	-	chr6_2:78608308-78608327	Msa0929790:three_prime_UTR	50.0%
	TTTCCTGTTACCACCACGTC+AGG	-	chr6_2:78608343-78608362	Msa0929790:three_prime_UTR	50.0%
	TTACCACCACGTCAGGTGAT+AGG	-	chr6_2:78608350-78608369	Msa0929790:three_prime_UTR	50.0%
	CTTCGGTGGAAACCATAGTG+AGG	+	chr6_2:78608559-78608578	None:intergenic	50.0%
	TTCGAGAAGGATCTCTTCGG+TGG	+	chr6_2:78608573-78608592	None:intergenic	50.0%
	GCGTTCGAGAAGGATCTCTT+CGG	+	chr6_2:78608576-78608595	None:intergenic	50.0%
	GGCTGTGCGAGATCCTTATA+TGG	+	chr6_2:78609021-78609040	None:intergenic	50.0%
	TTGCAACAGATGCTGCTCCT+GGG	-	chr6_2:78609067-78609086	Msa0929790:intron	50.0%
	TGTTCGGGTAACCAACCTCT+CGG	-	chr6_2:78609194-78609213	Msa0929790:intron	50.0%
!	CTTGAGCTTTTCCGGCCTTT+TGG	-	chr6_2:78609240-78609259	Msa0929790:intron	50.0%
	TACTGACAGCACCAAAAGGC+CGG	+	chr6_2:78609254-78609273	None:intergenic	50.0%
!!!	GCCTTTTGGTGCTGTCAGTA+GGG	-	chr6_2:78609254-78609273	Msa0929790:intron	50.0%
	ACCCTACTGACAGCACCAAA+AGG	+	chr6_2:78609258-78609277	None:intergenic	50.0%
	TTAGCAGGGAAGATGCTCAG+AGG	-	chr6_2:78609337-78609356	Msa0929790:CDS	50.0%
	TAGCAGGGAAGATGCTCAGA+GGG	-	chr6_2:78609338-78609357	Msa0929790:CDS	50.0%
!	TGCTTAGGTTGTTCTTGGGG+TGG	+	chr6_2:78609421-78609440	None:intergenic	50.0%
!!	CTCAAGAGCACCCAATGCTT+AGG	+	chr6_2:78609436-78609455	None:intergenic	50.0%
	TTTGCCCCCTCTCTTATCTC+CGG	-	chr6_2:78609459-78609478	Msa0929790:CDS	50.0%
	ACTTCCGGAGATAAGAGAGG+GGG	+	chr6_2:78609466-78609485	None:intergenic	50.0%
	GACTTCCGGAGATAAGAGAG+GGG	+	chr6_2:78609467-78609486	None:intergenic	50.0%
!	GATTGGTTGCATGGTTCACG+AGG	-	chr6_2:78609661-78609680	Msa0929790:five_prime_UTR	50.0%
	GGCGGCAATTCAGTCTGAAC+CGG	-	chr6_2:78608271-78608290	Msa0929790:three_prime_UTR	55.0%
	AGTCTGAACCGGCGAAGCTA+AGG	-	chr6_2:78608282-78608301	Msa0929790:three_prime_UTR	55.0%
	TGAACCGGCGAAGCTAAGGT+GGG	-	chr6_2:78608286-78608305	Msa0929790:three_prime_UTR	55.0%
	GCTAAGGTGGGGAGAATTGG+AGG	-	chr6_2:78608298-78608317	Msa0929790:three_prime_UTR	55.0%
	GGAAGACGATGGCGAAGATC+TGG	-	chr6_2:78608319-78608338	Msa0929790:three_prime_UTR	55.0%
	TCACCTGACGTGGTGGTAAC+AGG	+	chr6_2:78608349-78608368	None:intergenic	55.0%
	TCAGGACCTATCACCTGACG+TGG	+	chr6_2:78608359-78608378	None:intergenic	55.0%
	CTCCGAACTTAGGCCAGGAA+CGG	+	chr6_2:78608508-78608527	None:intergenic	55.0%
	TGAACGGCGTCTCCGAACTT+AGG	+	chr6_2:78608518-78608537	None:intergenic	55.0%
	GACGCCGTTCATGAAGACGT+CGG	-	chr6_2:78608527-78608546	Msa0929790:CDS	55.0%
!!	GGCACCGACGTCTTCATGAA+CGG	+	chr6_2:78608534-78608553	None:intergenic	55.0%
	GGTGGAAACCATAGTGAGGC+GGG	+	chr6_2:78608555-78608574	None:intergenic	55.0%
	CGGTGGAAACCATAGTGAGG+CGG	+	chr6_2:78608556-78608575	None:intergenic	55.0%
	GACAGTGGGTCAGCAGTCTT+TGG	+	chr6_2:78608922-78608941	None:intergenic	55.0%
	ATGCAGGACTTGCGGGAAGA+AGG	-	chr6_2:78608972-78608991	Msa0929790:intron	55.0%
	TGCAGGACTTGCGGGAAGAA+GGG	-	chr6_2:78608973-78608992	Msa0929790:intron	55.0%
	GCGGGAAGAAGGGTGATCAT+TGG	-	chr6_2:78608983-78609002	Msa0929790:intron	55.0%
	GGAGCAGCATCTGTTGCAAC+AGG	+	chr6_2:78609066-78609085	None:intergenic	55.0%
	GTTGCAACAGATGCTGCTCC+TGG	-	chr6_2:78609066-78609085	Msa0929790:intron	55.0%
	TGCAACAGATGCTGCTCCTG+GGG	-	chr6_2:78609068-78609087	Msa0929790:intron	55.0%
	GCTTCAGCTGCCTCAGCAAA+GGG	-	chr6_2:78609090-78609109	Msa0929790:intron	55.0%
!!	GGACTACTGGCTCTGACATG+AGG	-	chr6_2:78609151-78609170	Msa0929790:intron	55.0%
!!	CTACTGGCTCTGACATGAGG+CGG	-	chr6_2:78609154-78609173	Msa0929790:intron	55.0%
	CAACCTCTCGGAGGACACAA+GGG	-	chr6_2:78609206-78609225	Msa0929790:intron	55.0%
!!!	GGCCTTTTGGTGCTGTCAGT+AGG	-	chr6_2:78609253-78609272	Msa0929790:intron	55.0%
	ACTGGCATGAGTAGGGGCTT+TGG	-	chr6_2:78609300-78609319	Msa0929790:CDS	55.0%
	TGGTTGCATGGTTCACGAGG+TGG	-	chr6_2:78609664-78609683	Msa0929790:five_prime_UTR	55.0%
	GGCGGCAATTCAGTCTGAAC+CGG	-	chr6_2:78608271-78608290	Msa0929790:three_prime_UTR	55.0%
	AGTCTGAACCGGCGAAGCTA+AGG	-	chr6_2:78608282-78608301	Msa0929790:three_prime_UTR	55.0%
	TGAACCGGCGAAGCTAAGGT+GGG	-	chr6_2:78608286-78608305	Msa0929790:three_prime_UTR	55.0%
	GCTAAGGTGGGGAGAATTGG+AGG	-	chr6_2:78608298-78608317	Msa0929790:three_prime_UTR	55.0%
	GGAAGACGATGGCGAAGATC+TGG	-	chr6_2:78608319-78608338	Msa0929790:three_prime_UTR	55.0%
	TCACCTGACGTGGTGGTAAC+AGG	+	chr6_2:78608349-78608368	None:intergenic	55.0%
	TCAGGACCTATCACCTGACG+TGG	+	chr6_2:78608359-78608378	None:intergenic	55.0%
	CTCCGAACTTAGGCCAGGAA+CGG	+	chr6_2:78608508-78608527	None:intergenic	55.0%
	TGAACGGCGTCTCCGAACTT+AGG	+	chr6_2:78608518-78608537	None:intergenic	55.0%
	GACGCCGTTCATGAAGACGT+CGG	-	chr6_2:78608527-78608546	Msa0929790:CDS	55.0%
!!	GGCACCGACGTCTTCATGAA+CGG	+	chr6_2:78608534-78608553	None:intergenic	55.0%
	GGTGGAAACCATAGTGAGGC+GGG	+	chr6_2:78608555-78608574	None:intergenic	55.0%
	CGGTGGAAACCATAGTGAGG+CGG	+	chr6_2:78608556-78608575	None:intergenic	55.0%
	GACAGTGGGTCAGCAGTCTT+TGG	+	chr6_2:78608922-78608941	None:intergenic	55.0%
	ATGCAGGACTTGCGGGAAGA+AGG	-	chr6_2:78608972-78608991	Msa0929790:intron	55.0%
	TGCAGGACTTGCGGGAAGAA+GGG	-	chr6_2:78608973-78608992	Msa0929790:intron	55.0%
	GCGGGAAGAAGGGTGATCAT+TGG	-	chr6_2:78608983-78609002	Msa0929790:intron	55.0%
	GGAGCAGCATCTGTTGCAAC+AGG	+	chr6_2:78609066-78609085	None:intergenic	55.0%
	GTTGCAACAGATGCTGCTCC+TGG	-	chr6_2:78609066-78609085	Msa0929790:intron	55.0%
	TGCAACAGATGCTGCTCCTG+GGG	-	chr6_2:78609068-78609087	Msa0929790:intron	55.0%
	GCTTCAGCTGCCTCAGCAAA+GGG	-	chr6_2:78609090-78609109	Msa0929790:intron	55.0%
!!	GGACTACTGGCTCTGACATG+AGG	-	chr6_2:78609151-78609170	Msa0929790:intron	55.0%
!!	CTACTGGCTCTGACATGAGG+CGG	-	chr6_2:78609154-78609173	Msa0929790:intron	55.0%
	CAACCTCTCGGAGGACACAA+GGG	-	chr6_2:78609206-78609225	Msa0929790:intron	55.0%
!!!	GGCCTTTTGGTGCTGTCAGT+AGG	-	chr6_2:78609253-78609272	Msa0929790:intron	55.0%
	ACTGGCATGAGTAGGGGCTT+TGG	-	chr6_2:78609300-78609319	Msa0929790:CDS	55.0%
	TGGTTGCATGGTTCACGAGG+TGG	-	chr6_2:78609664-78609683	Msa0929790:five_prime_UTR	55.0%
	CTGAACCGGCGAAGCTAAGG+TGG	-	chr6_2:78608285-78608304	Msa0929790:three_prime_UTR	60.0%
	GAACCGGCGAAGCTAAGGTG+GGG	-	chr6_2:78608287-78608306	Msa0929790:three_prime_UTR	60.0%
	TCTCCCCACCTTAGCTTCGC+CGG	+	chr6_2:78608293-78608312	None:intergenic	60.0%
	GGACCTATCACCTGACGTGG+TGG	+	chr6_2:78608356-78608375	None:intergenic	60.0%
	GGCAAGTTTGCGGGTTCGAG+TGG	+	chr6_2:78608453-78608472	None:intergenic	60.0%
!	ACGCGCGTTGGCAAGTTTGC+GGG	+	chr6_2:78608462-78608481	None:intergenic	60.0%
!	GACGCGCGTTGGCAAGTTTG+CGG	+	chr6_2:78608463-78608482	None:intergenic	60.0%
	CGCCGTTCCTGGCCTAAGTT+CGG	-	chr6_2:78608503-78608522	Msa0929790:CDS	60.0%
!	GTGGTTTGGGGCGTTCGAGA+AGG	+	chr6_2:78608586-78608605	None:intergenic	60.0%
	CTCGAACGCCCCAAACCACT+TGG	-	chr6_2:78608587-78608606	Msa0929790:CDS	60.0%
	GGCTTCAGCTGCCTCAGCAA+AGG	-	chr6_2:78609089-78609108	Msa0929790:intron	60.0%
	GTACCTCCTAGCCTGAGAGC+TGG	-	chr6_2:78609120-78609139	Msa0929790:intron	60.0%
	TCCTAGCCTGAGAGCTGGTG+CGG	-	chr6_2:78609125-78609144	Msa0929790:intron	60.0%
	TCGGGTAACCAACCTCTCGG+AGG	-	chr6_2:78609197-78609216	Msa0929790:intron	60.0%
	CCTTGTGTCCTCCGAGAGGT+TGG	+	chr6_2:78609208-78609227	None:intergenic	60.0%
	CCAACCTCTCGGAGGACACA+AGG	-	chr6_2:78609205-78609224	Msa0929790:intron	60.0%
	GGGTGGCCCATTCAACTCTC+AGG	+	chr6_2:78609404-78609423	None:intergenic	60.0%
	CTGAACCGGCGAAGCTAAGG+TGG	-	chr6_2:78608285-78608304	Msa0929790:three_prime_UTR	60.0%
	GAACCGGCGAAGCTAAGGTG+GGG	-	chr6_2:78608287-78608306	Msa0929790:three_prime_UTR	60.0%
	TCTCCCCACCTTAGCTTCGC+CGG	+	chr6_2:78608293-78608312	None:intergenic	60.0%
	GGACCTATCACCTGACGTGG+TGG	+	chr6_2:78608356-78608375	None:intergenic	60.0%
	GGCAAGTTTGCGGGTTCGAG+TGG	+	chr6_2:78608453-78608472	None:intergenic	60.0%
!	ACGCGCGTTGGCAAGTTTGC+GGG	+	chr6_2:78608462-78608481	None:intergenic	60.0%
!	GACGCGCGTTGGCAAGTTTG+CGG	+	chr6_2:78608463-78608482	None:intergenic	60.0%
	CGCCGTTCCTGGCCTAAGTT+CGG	-	chr6_2:78608503-78608522	Msa0929790:CDS	60.0%
!	GTGGTTTGGGGCGTTCGAGA+AGG	+	chr6_2:78608586-78608605	None:intergenic	60.0%
	CTCGAACGCCCCAAACCACT+TGG	-	chr6_2:78608587-78608606	Msa0929790:CDS	60.0%
	GGCTTCAGCTGCCTCAGCAA+AGG	-	chr6_2:78609089-78609108	Msa0929790:intron	60.0%
	GTACCTCCTAGCCTGAGAGC+TGG	-	chr6_2:78609120-78609139	Msa0929790:intron	60.0%
	TCCTAGCCTGAGAGCTGGTG+CGG	-	chr6_2:78609125-78609144	Msa0929790:intron	60.0%
	TCGGGTAACCAACCTCTCGG+AGG	-	chr6_2:78609197-78609216	Msa0929790:intron	60.0%
	CCTTGTGTCCTCCGAGAGGT+TGG	+	chr6_2:78609208-78609227	None:intergenic	60.0%
	CCAACCTCTCGGAGGACACA+AGG	-	chr6_2:78609205-78609224	Msa0929790:intron	60.0%
	GGGTGGCCCATTCAACTCTC+AGG	+	chr6_2:78609404-78609423	None:intergenic	60.0%
!	GCGTTTGCTGAGACGCGCGT+TGG	+	chr6_2:78608474-78608493	None:intergenic	65.0%
	AGGCCAGGAACGGCGCTCAA+CGG	+	chr6_2:78608498-78608517	None:intergenic	65.0%
	GGCGTCTCCGAACTTAGGCC+AGG	+	chr6_2:78608513-78608532	None:intergenic	65.0%
	GCACCAGCTCTCAGGCTAGG+AGG	+	chr6_2:78609126-78609145	None:intergenic	65.0%
	TCCGCACCAGCTCTCAGGCT+AGG	+	chr6_2:78609129-78609148	None:intergenic	65.0%
	TCCTCTCCGCACCAGCTCTC+AGG	+	chr6_2:78609134-78609153	None:intergenic	65.0%
	GCTGGTGCGGAGAGGACTAC+TGG	-	chr6_2:78609138-78609157	Msa0929790:intron	65.0%
!!	CTGGCTCTGACATGAGGCGG+AGG	-	chr6_2:78609157-78609176	Msa0929790:intron	65.0%
	GCTCCCTTGTGTCCTCCGAG+AGG	+	chr6_2:78609212-78609231	None:intergenic	65.0%
!	GCGTTTGCTGAGACGCGCGT+TGG	+	chr6_2:78608474-78608493	None:intergenic	65.0%
	AGGCCAGGAACGGCGCTCAA+CGG	+	chr6_2:78608498-78608517	None:intergenic	65.0%
	GGCGTCTCCGAACTTAGGCC+AGG	+	chr6_2:78608513-78608532	None:intergenic	65.0%
	GCACCAGCTCTCAGGCTAGG+AGG	+	chr6_2:78609126-78609145	None:intergenic	65.0%
	TCCGCACCAGCTCTCAGGCT+AGG	+	chr6_2:78609129-78609148	None:intergenic	65.0%
	TCCTCTCCGCACCAGCTCTC+AGG	+	chr6_2:78609134-78609153	None:intergenic	65.0%
	GCTGGTGCGGAGAGGACTAC+TGG	-	chr6_2:78609138-78609157	Msa0929790:intron	65.0%
!!	CTGGCTCTGACATGAGGCGG+AGG	-	chr6_2:78609157-78609176	Msa0929790:intron	65.0%
	GCTCCCTTGTGTCCTCCGAG+AGG	+	chr6_2:78609212-78609231	None:intergenic	65.0%
!	CGTCGGTGCCCGCCTCACTA+TGG	-	chr6_2:78608544-78608563	Msa0929790:CDS	70.0%
	GCTGAGGCAGCTGAAGCCCC+AGG	+	chr6_2:78609087-78609106	None:intergenic	70.0%
	GCCTGAGAGCTGGTGCGGAG+AGG	-	chr6_2:78609130-78609149	Msa0929790:intron	70.0%
!	CGTCGGTGCCCGCCTCACTA+TGG	-	chr6_2:78608544-78608563	Msa0929790:CDS	70.0%
	GCTGAGGCAGCTGAAGCCCC+AGG	+	chr6_2:78609087-78609106	None:intergenic	70.0%
	GCCTGAGAGCTGGTGCGGAG+AGG	-	chr6_2:78609130-78609149	Msa0929790:intron	70.0%
!	GCGCCGTTGAGCGCCGTTCC+TGG	-	chr6_2:78608492-78608511	Msa0929790:CDS	75.0%
!	GCGCCGTTGAGCGCCGTTCC+TGG	-	chr6_2:78608492-78608511	Msa0929790:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	78608145	78609725	78608145	ID=Msa0929790;Name=Msa0929790
chr6_2	mRNA	78608145	78609725	78608145	ID=Msa0929790-mRNA-1;Parent=Msa0929790;Name=Msa0929790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=121\|1\|1\|1\|1\|1\|2\|288\|292
chr6_2	exon	78608145	78608968	78608145	ID=Msa0929790-mRNA-1:exon:13266;Parent=Msa0929790-mRNA-1
chr6_2	exon	78609262	78609725	78609262	ID=Msa0929790-mRNA-1:exon:13265;Parent=Msa0929790-mRNA-1
chr6_2	five_prime_UTR	78609605	78609725	78609605	ID=Msa0929790-mRNA-1:five_prime_utr;Parent=Msa0929790-mRNA-1
chr6_2	CDS	78609262	78609604	78609262	ID=Msa0929790-mRNA-1:cds;Parent=Msa0929790-mRNA-1
chr6_2	CDS	78608433	78608968	78608433	ID=Msa0929790-mRNA-1:cds;Parent=Msa0929790-mRNA-1
chr6_2	three_prime_UTR	78608145	78608432	78608145	ID=Msa0929790-mRNA-1:three_prime_utr;Parent=Msa0929790-mRNA-1

Gene Sequence

>Msa0929790

ATGGCGGCGGCAATTCAGTCTGAACCGGCGAAGCTAAGGTGGGGAGAATTGGAGGAAGACGATGGCGAAGATCTGGATTTCCTGTTACCACCACGTCAGGTGATAGGTCCTGATGAAAATGGAATCAAAAGGGTTATTGAGTACAAATTCGATGATGATGGTAATAAGGTTAAGATCACTACAACCACTCGAACCCGCAAACTTGCCAACGCGCGTCTCAGCAAACGCGCCGTTGAGCGCCGTTCCTGGCCTAAGTTCGGAGACGCCGTTCATGAAGACGTCGGTGCCCGCCTCACTATGGTTTCCACCGAAGAGATCCTTCTCGAACGCCCCAAACCACTTGGTTCCAACAAGGAGGATCCAAAGACTGCTGACCCACTGTCTCAATTCAATAAAGGTGCTGTTCTTATGGTATGCAGGACTTGCGGGAAGAAGGGTGATCATTGGACTTCAAGGTGTCCATATAAGGATCTCGCACAGCCGCCTGAGACTTTTGTTGATAAACCTGTTGCAACAGATGCTGCTCCTGGGGCTTCAGCTGCCTCAGCAAAGGGTGCATATGTACCTCCTAGCCTGAGAGCTGGTGCGGAGAGGACTACTGGCTCTGACATGAGGCGGAGGAACGATGAGAATTCTGTTCGGGTAACCAACCTCTCGGAGGACACAAGGGAGCCTGATTTGCTTGAGCTTTTCCGGCCTTTTGGTGCTGTCAGTAGGGTCTATGTTGCTATTGATCAAAAGACTGGCATGAGTAGGGGCTTTGGCTTTGTGAACTTTGTTAGCAGGGAAGATGCTCAGAGGGCTATCAACAAACTCAATGGATATGGCTACGACAATCTCATCCTGAGAGTTGAATGGGCCACCCCAAGAACAACCTAA

Protein sequence

>Msa0929790

MAAAIQSEPAKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKRVIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGARLTMVSTEEILLERPKPLGSNKEDPKTADPLSQFNKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPPETFVDKPVATDAAPGASAASAKGAYVPPSLRAGAERTTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT*