Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216200 | XP_003598026.1 | 97.462 | 197 | 5 | 0 | 33 | 229 | 1 | 197 | 3.83e-138 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216200 | sp|Q9FLF0|RS92_ARATH | 89.305 | 187 | 20 | 0 | 33 | 219 | 1 | 187 | 1.17e-120 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216200 | B7FMD4 | 97.462 | 197 | 5 | 0 | 33 | 229 | 1 | 197 | 1.83e-138 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0216200 | 0.809374 | 1.953309e-50 | -8.615850e-47 |
| Msa0003330 | Msa0216200 | 0.837077 | 6.431193e-57 | -8.615850e-47 |
| Msa0042510 | Msa0216200 | 0.825161 | 5.451097e-54 | -8.615850e-47 |
| Msa0065330 | Msa0216200 | 0.832749 | 7.913887e-56 | -8.615850e-47 |
| Msa0079560 | Msa0216200 | 0.805277 | 1.442978e-49 | -8.615850e-47 |
| Msa0108750 | Msa0216200 | 0.821836 | 3.266840e-53 | -8.615850e-47 |
| Msa0128330 | Msa0216200 | 0.800998 | 1.107683e-48 | -8.615850e-47 |
| Msa0168320 | Msa0216200 | 0.808435 | 3.101122e-50 | -8.615850e-47 |
| Msa0191450 | Msa0216200 | 0.818755 | 1.660763e-52 | -8.615850e-47 |
| Msa0192300 | Msa0216200 | 0.821600 | 3.703361e-53 | -8.615850e-47 |
| Msa0216200 | Msa0233550 | 0.856806 | 2.507677e-62 | -8.615850e-47 |
| Msa0216200 | Msa0295560 | 0.814455 | 1.527208e-51 | -8.615850e-47 |
| Msa0216200 | Msa0301250 | 0.828132 | 1.065501e-54 | -8.615850e-47 |
| Msa0216200 | Msa0472480 | 0.806506 | 7.959190e-50 | -8.615850e-47 |
| Msa0216200 | Msa0482560 | 0.816809 | 4.565406e-52 | -8.615850e-47 |
| Msa0216200 | Msa0485220 | 0.823265 | 1.519844e-53 | -8.615850e-47 |
| Msa0216200 | Msa0511760 | 0.813160 | 2.946585e-51 | -8.615850e-47 |
| Msa0216200 | Msa0578010 | 0.834713 | 2.556791e-56 | -8.615850e-47 |
| Msa0216200 | Msa0619230 | 0.834526 | 2.848094e-56 | -8.615850e-47 |
| Msa0216200 | Msa0621190 | 0.812916 | 3.331351e-51 | -8.615850e-47 |
| Msa0216200 | Msa0656450 | 0.826912 | 2.091201e-54 | -8.615850e-47 |
| Msa0216200 | Msa0694400 | 0.807437 | 5.058086e-50 | -8.615850e-47 |
| Msa0216200 | Msa0758420 | 0.821260 | 4.437094e-53 | -8.615850e-47 |
| Msa0216200 | Msa0788380 | 0.829073 | 6.312794e-55 | -8.615850e-47 |
| Msa0216200 | Msa0929790 | 0.804529 | 2.068316e-49 | -8.615850e-47 |
| Msa0216200 | Msa0930360 | 0.838657 | 2.524289e-57 | -8.615850e-47 |
| Msa0216200 | Msa0930790 | 0.838002 | 3.723534e-57 | -8.615850e-47 |
| Msa0216200 | Msa1166570 | 0.802152 | 6.424974e-49 | -8.615850e-47 |
| Msa0216200 | Msa1180000 | 0.811979 | 5.337865e-51 | -8.615850e-47 |
| Msa0216200 | Msa1213850 | 0.812656 | 3.799285e-51 | -8.615850e-47 |
| Msa0216200 | Msa1258540 | 0.815427 | 9.298767e-52 | -8.615850e-47 |
| Msa0216200 | Msa1286400 | 0.806773 | 6.990333e-50 | -8.615850e-47 |
| Msa0216200 | Msa1317390 | 0.844704 | 6.411244e-59 | -8.615850e-47 |
| Msa0216200 | Msa1387750 | 0.825306 | 5.037738e-54 | -8.615850e-47 |
| Msa0216200 | Msa1390760 | 0.833128 | 6.370130e-56 | -8.615850e-47 |
| Msa0216200 | Msa1413570 | 0.828540 | 8.494191e-55 | -8.615850e-47 |
| Msa0216200 | Msa1453530 | 0.843059 | 1.768279e-58 | -8.615850e-47 |
| Msa0216200 | Msa1463570 | 0.804589 | 2.009126e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216200 | MtrunA17_Chr3g0077371 | 97.462 | 197 | 5 | 0 | 33 | 229 | 1 | 197 | 3.52e-142 | 395 |
| Msa0216200 | MtrunA17_Chr3g0077391 | 97.462 | 197 | 5 | 0 | 33 | 229 | 1 | 197 | 3.52e-142 | 395 |
| Msa0216200 | MtrunA17_Chr4g0009481 | 97.462 | 197 | 5 | 0 | 33 | 229 | 1 | 197 | 3.52e-142 | 395 |
| Msa0216200 | MtrunA17_Chr7g0241891 | 96.447 | 197 | 7 | 0 | 33 | 229 | 1 | 197 | 1.66e-140 | 391 |
| Msa0216200 | MtrunA17_Chr1g0182531 | 87.264 | 212 | 21 | 2 | 14 | 219 | 3 | 214 | 4.50e-125 | 353 |
| Msa0216200 | MtrunA17_Chr4g0060551 | 93.913 | 115 | 7 | 0 | 33 | 147 | 1 | 115 | 1.76e-75 | 223 |
| Msa0216200 | MtrunA17_Chr4g0009501 | 100.000 | 60 | 0 | 0 | 170 | 229 | 13 | 72 | 1.60e-37 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216200 | AT5G39850.1 | 89.305 | 187 | 20 | 0 | 33 | 219 | 1 | 187 | 1.18e-121 | 343 |
| Msa0216200 | AT5G15200.1 | 83.838 | 198 | 31 | 1 | 33 | 229 | 1 | 198 | 2.54e-115 | 328 |
| Msa0216200 | AT5G15200.2 | 88.321 | 137 | 16 | 0 | 33 | 169 | 1 | 137 | 5.30e-84 | 247 |
Find 88 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGGTGGTGGTCTTCC+TGG | 0.197404 | 2_1:+61925267 | Msa0216200:CDS |
| CCGCTGTTTGCCTGCCTACT+AGG | 0.239302 | 2_1:-61924273 | None:intergenic |
| GAACATCAAAGCAAAATATT+TGG | 0.247831 | 2_1:-61925650 | None:intergenic |
| ATCACCACCAGAAGCCTTCT+TGG | 0.255696 | 2_1:-61925322 | None:intergenic |
| TTTGTGTTTAAAATGTTAAT+TGG | 0.268490 | 2_1:-61925836 | None:intergenic |
| TTCCCATAGTTTCGGTAAAC+TGG | 0.276382 | 2_1:-61924327 | None:intergenic |
| TTGGATATCATTCTATTAAC+TGG | 0.281321 | 2_1:-61925817 | None:intergenic |
| CAGACTCTTGTCTTCAAATC+TGG | 0.288805 | 2_1:+61924648 | Msa0216200:CDS |
| CCTTAAGGCTGCTGCTTAGA+AGG | 0.307424 | 2_1:+61925427 | Msa0216200:three_prime_UTR |
| GTTCCAGTTTACCGAAACTA+TGG | 0.313978 | 2_1:+61924324 | Msa0216200:CDS |
| TTGAAGCTGGTCGGAGAGTA+TGG | 0.314070 | 2_1:+61924402 | Msa0216200:CDS |
| CATCATAGGCCTCATGCTTC+AGG | 0.346028 | 2_1:+61925749 | Msa0216200:three_prime_UTR |
| CCTTCTTGGCTGCAGCCTTA+AGG | 0.354248 | 2_1:-61925308 | None:intergenic |
| TTTGCTTTGATGTTCTCTTC+AGG | 0.360413 | 2_1:+61925658 | Msa0216200:three_prime_UTR |
| ACCATGCTAGGGTTCTTATC+AGG | 0.369101 | 2_1:+61924688 | Msa0216200:CDS |
| CCTTCTAAGCAGCAGCCTTA+AGG | 0.383756 | 2_1:-61925427 | None:intergenic |
| GCTGCAGCCAAGAAGGCTTC+TGG | 0.408125 | 2_1:+61925315 | Msa0216200:CDS |
| AGGCAAGACACTAGCATCAT+AGG | 0.409453 | 2_1:+61925735 | Msa0216200:three_prime_UTR |
| TGGACGACGTGGCTTCTTGA+AGG | 0.409761 | 2_1:-61924352 | None:intergenic |
| TCCATACGAGAAGGAGCGTT+TGG | 0.432310 | 2_1:+61924371 | Msa0216200:CDS |
| TCTTCTCATCCAATGTCAAA+AGG | 0.436967 | 2_1:-61924494 | None:intergenic |
| TCCCTCACCAGTCCCTTTGG+TGG | 0.444838 | 2_1:+61925255 | Msa0216200:CDS |
| TTATCAGGCAGAGACACATT+AGG | 0.445935 | 2_1:+61924703 | Msa0216200:CDS |
| CCTAGCATGGTGAATGGACT+TGG | 0.448468 | 2_1:-61924676 | None:intergenic |
| AATTAACTCACATATTCTCT+TGG | 0.449883 | 2_1:+61925371 | Msa0216200:three_prime_UTR |
| ACAAACGAAAGTGAATTATA+AGG | 0.452155 | 2_1:+61925854 | Msa0216200:three_prime_UTR |
| TTCTTTCGCTTCACGCGACC+AGG | 0.452567 | 2_1:-61925285 | None:intergenic |
| TTCTAGCATTGTTACGGATA+CGG | 0.467109 | 2_1:-61924470 | None:intergenic |
| CTCACCAGTCCCTTTGGTGG+TGG | 0.469552 | 2_1:+61925258 | Msa0216200:CDS |
| ACCAGGAAGACCACCACCAA+AGG | 0.473047 | 2_1:-61925268 | None:intergenic |
| AAAGGGTTCTAGCATTGTTA+CGG | 0.475438 | 2_1:-61924476 | None:intergenic |
| AGTGAACATCCCATCCTTCA+TGG | 0.476720 | 2_1:+61925200 | Msa0216200:CDS |
| GAACCCTCGTCGGATCTTTG+AGG | 0.484508 | 2_1:+61924515 | Msa0216200:CDS |
| GTTTCGGTAAACTGGAACGT+GGG | 0.491135 | 2_1:-61924319 | None:intergenic |
| AAGAAGGCTTCTGGTGGTGA+TGG | 0.495137 | 2_1:+61925324 | Msa0216200:CDS |
| GAATGAATCATTTAAAAGGA+AGG | 0.495858 | 2_1:+61924217 | None:intergenic |
| AACCCTCGTCGGATCTTTGA+GGG | 0.508041 | 2_1:+61924516 | Msa0216200:CDS |
| CTTGAAGTGAAAGAACCTTA+AGG | 0.510802 | 2_1:+61925412 | Msa0216200:three_prime_UTR |
| CTTCTCATCCAATGTCAAAA+GGG | 0.512873 | 2_1:-61924493 | None:intergenic |
| CCTTAAGGCTGCAGCCAAGA+AGG | 0.517095 | 2_1:+61925308 | Msa0216200:CDS |
| TCCAAACGCTCCTTCTCGTA+TGG | 0.519540 | 2_1:-61924372 | None:intergenic |
| CCAAGTCCATTCACCATGCT+AGG | 0.525789 | 2_1:+61924676 | Msa0216200:CDS |
| TCAACCCTCACCATGAAGGA+TGG | 0.531047 | 2_1:-61925210 | None:intergenic |
| AAGAACCCTAGCATGGTGAA+TGG | 0.539163 | 2_1:-61924682 | None:intergenic |
| GCTGCTGCTTAGAAGGCATC+CGG | 0.541095 | 2_1:+61925434 | Msa0216200:three_prime_UTR |
| CGTGAAGCGAAAGAACCTTA+AGG | 0.541128 | 2_1:+61925293 | Msa0216200:CDS |
| AGGAGAACATAGAACTATGA+AGG | 0.541200 | 2_1:+61925769 | Msa0216200:three_prime_UTR |
| TGGTCGGAGAGTATGGTCTT+CGG | 0.541482 | 2_1:+61924409 | Msa0216200:CDS |
| CTGTCTAGACATAAATAAGA+AGG | 0.541734 | 2_1:-61925523 | None:intergenic |
| TTGAGGAGAATGTTTAAGCA+TGG | 0.560766 | 2_1:+61924549 | Msa0216200:CDS |
| CAACCCTCACCATGAAGGAT+GGG | 0.569875 | 2_1:-61925209 | None:intergenic |
| AAGACCACCACCAAAGGGAC+TGG | 0.570564 | 2_1:-61925262 | None:intergenic |
| TGAATCAACCCTCACCATGA+AGG | 0.571223 | 2_1:-61925214 | None:intergenic |
| TTCCAGTTTACCGAAACTAT+GGG | 0.574123 | 2_1:+61924325 | Msa0216200:CDS |
| TATTGCTGATTGAATGCACT+TGG | 0.575443 | 2_1:+61925691 | Msa0216200:three_prime_UTR |
| ACCACCAAAGGGACTGGTGA+GGG | 0.576930 | 2_1:-61925256 | None:intergenic |
| GAACAAGCTCGATTATGTGT+TGG | 0.578338 | 2_1:+61924590 | Msa0216200:CDS |
| TTTGGATGCTGAGTTGAAGC+TGG | 0.579570 | 2_1:+61924389 | Msa0216200:CDS |
| CCAGGAAGACCACCACCAAA+GGG | 0.581024 | 2_1:-61925267 | None:intergenic |
| ATCCGGTGGTGACGAAAACA+AGG | 0.583864 | 2_1:+61925451 | Msa0216200:three_prime_UTR |
| GGTGTAAGAGAGAGCTGTGG+AGG | 0.589621 | 2_1:+61924430 | Msa0216200:CDS |
| TTCTGGTGGTGATGGAGATG+AGG | 0.590267 | 2_1:+61925332 | Msa0216200:CDS |
| CATCCCATCCTTCATGGTGA+GGG | 0.593258 | 2_1:+61925206 | Msa0216200:CDS |
| TCTTGTCTTCAAATCTGGCA+TGG | 0.593384 | 2_1:+61924653 | Msa0216200:CDS |
| CAAGTCCATTCACCATGCTA+GGG | 0.599707 | 2_1:+61924677 | Msa0216200:CDS |
| GCAGCCAAGAAGGCTTCTGG+TGG | 0.599775 | 2_1:+61925318 | Msa0216200:CDS |
| CTAGACATAAATAAGAAGGT+AGG | 0.603631 | 2_1:-61925519 | None:intergenic |
| AGTAGGCAGGCAAACAGCGG+CGG | 0.616203 | 2_1:+61924276 | Msa0216200:CDS |
| ACATCCCATCCTTCATGGTG+AGG | 0.616704 | 2_1:+61925205 | Msa0216200:CDS |
| GCTGCTTAGAAGGCATCCGG+TGG | 0.622553 | 2_1:+61925437 | Msa0216200:three_prime_UTR |
| GCCACGTCGTCCATACGAGA+AGG | 0.630150 | 2_1:+61924362 | Msa0216200:CDS |
| TGAAGACAAGAGTCTGAAGA+CGG | 0.630423 | 2_1:-61924641 | None:intergenic |
| CTATGTTCTCCTGAAGCATG+AGG | 0.638978 | 2_1:-61925758 | None:intergenic |
| CCTAGTAGGCAGGCAAACAG+CGG | 0.639138 | 2_1:+61924273 | Msa0216200:CDS |
| GATGCTGAGTTGAAGCTGGT+CGG | 0.640820 | 2_1:+61924393 | Msa0216200:CDS |
| CTAACTCACCCACAAAACAA+TGG | 0.644198 | 2_1:-61925589 | None:intergenic |
| GCCTGATAAGAACCCTAGCA+TGG | 0.650504 | 2_1:-61924689 | None:intergenic |
| TTTCGGTAAACTGGAACGTG+GGG | 0.652647 | 2_1:-61924318 | None:intergenic |
| CACCACCAAAGGGACTGGTG+AGG | 0.654247 | 2_1:-61925257 | None:intergenic |
| TGGTGGTGATGGAGATGAGG+AGG | 0.657794 | 2_1:+61925335 | Msa0216200:CDS |
| GTGTAAGAGAGAGCTGTGGA+GGG | 0.669438 | 2_1:+61924431 | Msa0216200:CDS |
| AGTTTCGGTAAACTGGAACG+TGG | 0.680410 | 2_1:-61924320 | None:intergenic |
| TTCGGTGTAAGAGAGAGCTG+TGG | 0.694839 | 2_1:+61924427 | Msa0216200:CDS |
| TCCTTCTCGTATGGACGACG+TGG | 0.696550 | 2_1:-61924363 | None:intergenic |
| TGGATGAGAAGAACCCTCGT+CGG | 0.698285 | 2_1:+61924505 | Msa0216200:CDS |
| CACCCTCAAAGATCCGACGA+GGG | 0.706490 | 2_1:-61924518 | None:intergenic |
| TCACCCTCAAAGATCCGACG+AGG | 0.715310 | 2_1:-61924519 | None:intergenic |
| CGGTGGTGACGAAAACAAGG+AGG | 0.739932 | 2_1:+61925454 | Msa0216200:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATTTAATTGTAAGTT+TGG | + | chr2_1:61924745-61924764 | Msa0216200:intron | 10.0% |
| !!! | GTTTTAAAAACAAAATATAT+TGG | - | chr2_1:61925623-61925642 | None:intergenic | 10.0% |
| !!! | ATATCATTTTTTGTTTTCAT+AGG | + | chr2_1:61925163-61925182 | Msa0216200:intron | 15.0% |
| !!! | TATCATTTTTTGTTTTCATA+GGG | + | chr2_1:61925164-61925183 | Msa0216200:intron | 15.0% |
| !!! | TATTGTTTTTGATATCTTAA+AGG | + | chr2_1:61925715-61925734 | Msa0216200:three_prime_UTR | 15.0% |
| !!! | TTTGTGTTTAAAATGTTAAT+TGG | - | chr2_1:61925839-61925858 | None:intergenic | 15.0% |
| !!! | TTTATTTCTGCCTTTTATTT+GGG | + | chr2_1:61925091-61925110 | Msa0216200:intron | 20.0% |
| !! | ATGTCAATAGAACTTACTTT+TGG | + | chr2_1:61924836-61924855 | Msa0216200:intron | 25.0% |
| !!! | TGTCAATAGAACTTACTTTT+GGG | + | chr2_1:61924837-61924856 | Msa0216200:intron | 25.0% |
| !! | ATGTCAATAGAACTTACTTT+TGG | + | chr2_1:61924836-61924855 | Msa0216200:intron | 25.0% |
| !!! | TGTCAATAGAACTTACTTTT+GGG | + | chr2_1:61924837-61924856 | Msa0216200:intron | 25.0% |
| !! | ACAAAGGTTTAAGCAAATTT+TGG | - | chr2_1:61925072-61925091 | None:intergenic | 25.0% |
| ! | TAAAAGGCAGAAATAAACAA+AGG | - | chr2_1:61925088-61925107 | None:intergenic | 25.0% |
| !!! | GTTTATTTCTGCCTTTTATT+TGG | + | chr2_1:61925090-61925109 | Msa0216200:intron | 25.0% |
| ! | TGAAAGAAAACCCAAATAAA+AGG | - | chr2_1:61925104-61925123 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTTTTCATAGGGT+TGG | + | chr2_1:61925168-61925187 | Msa0216200:intron | 25.0% |
| !!! | TTTTTTGTTTTCATAGGGTT+GGG | + | chr2_1:61925169-61925188 | Msa0216200:intron | 25.0% |
| ! | AATTAACTCACATATTCTCT+TGG | + | chr2_1:61925371-61925390 | Msa0216200:three_prime_UTR | 25.0% |
| ! | GAACATCAAAGCAAAATATT+TGG | - | chr2_1:61925653-61925672 | None:intergenic | 25.0% |
| ! | TTGGATATCATTCTATTAAC+TGG | - | chr2_1:61925820-61925839 | None:intergenic | 25.0% |
| ! | ACAAACGAAAGTGAATTATA+AGG | + | chr2_1:61925854-61925873 | Msa0216200:three_prime_UTR | 25.0% |
| ! | AGAGTTCGAATCGAATTTTT+GGG | + | chr2_1:61924794-61924813 | Msa0216200:intron | 30.0% |
| AACACAAAATTGTGCAAACA+GGG | - | chr2_1:61924923-61924942 | None:intergenic | 30.0% | |
| AAACACAAAATTGTGCAAAC+AGG | - | chr2_1:61924924-61924943 | None:intergenic | 30.0% | |
| !! | GTTTAAGCAAATTTTGGCAA+TGG | - | chr2_1:61925066-61925085 | None:intergenic | 30.0% |
| CTAGACATAAATAAGAAGGT+AGG | - | chr2_1:61925522-61925541 | None:intergenic | 30.0% | |
| CTGTCTAGACATAAATAAGA+AGG | - | chr2_1:61925526-61925545 | None:intergenic | 30.0% | |
| !! | ATTTTGCTACCATTGTTTTG+TGG | + | chr2_1:61925580-61925599 | Msa0216200:three_prime_UTR | 30.0% |
| !! | TTTTGCTACCATTGTTTTGT+GGG | + | chr2_1:61925581-61925600 | Msa0216200:three_prime_UTR | 30.0% |
| TTCCAGTTTACCGAAACTAT+GGG | + | chr2_1:61924325-61924344 | Msa0216200:CDS | 35.0% | |
| ! | TGAAGGTTTTCCCATAGTTT+CGG | - | chr2_1:61924338-61924357 | None:intergenic | 35.0% |
| TTCTAGCATTGTTACGGATA+CGG | - | chr2_1:61924473-61924492 | None:intergenic | 35.0% | |
| ! | AAAGGGTTCTAGCATTGTTA+CGG | - | chr2_1:61924479-61924498 | None:intergenic | 35.0% |
| CTTCTCATCCAATGTCAAAA+GGG | - | chr2_1:61924496-61924515 | None:intergenic | 35.0% | |
| TCTTCTCATCCAATGTCAAA+AGG | - | chr2_1:61924497-61924516 | None:intergenic | 35.0% | |
| TTGAGGAGAATGTTTAAGCA+TGG | + | chr2_1:61924549-61924568 | Msa0216200:CDS | 35.0% | |
| ! | GAGAGTTCGAATCGAATTTT+TGG | + | chr2_1:61924793-61924812 | Msa0216200:intron | 35.0% |
| ! | TCGAAGACAAAAAGTATGCT+TGG | + | chr2_1:61924978-61924997 | Msa0216200:intron | 35.0% |
| GGTAGAAAAACCAAGTCTTT+AGG | + | chr2_1:61924999-61925018 | Msa0216200:intron | 35.0% | |
| AGTATAGACACCTAAAGACT+TGG | - | chr2_1:61925012-61925031 | None:intergenic | 35.0% | |
| AGTCTTTAGGTGTCTATACT+TGG | + | chr2_1:61925012-61925031 | Msa0216200:intron | 35.0% | |
| CAATGGCAACAAAACATGTA+AGG | - | chr2_1:61925049-61925068 | None:intergenic | 35.0% | |
| TCATCGTTGTGAAACATGTT+TGG | + | chr2_1:61925128-61925147 | Msa0216200:intron | 35.0% | |
| !!! | TCTCTTGGTTTTGTTCATAC+TGG | + | chr2_1:61925386-61925405 | Msa0216200:three_prime_UTR | 35.0% |
| CTTGAAGTGAAAGAACCTTA+AGG | + | chr2_1:61925412-61925431 | Msa0216200:three_prime_UTR | 35.0% | |
| TTTGCTTTGATGTTCTCTTC+AGG | + | chr2_1:61925658-61925677 | Msa0216200:three_prime_UTR | 35.0% | |
| ! | TATTGCTGATTGAATGCACT+TGG | + | chr2_1:61925691-61925710 | Msa0216200:three_prime_UTR | 35.0% |
| AGGAGAACATAGAACTATGA+AGG | + | chr2_1:61925769-61925788 | Msa0216200:three_prime_UTR | 35.0% | |
| TTCACCACCAAAAACCTAGT+AGG | + | chr2_1:61924259-61924278 | Msa0216200:CDS | 40.0% | |
| GTTCCAGTTTACCGAAACTA+TGG | + | chr2_1:61924324-61924343 | Msa0216200:CDS | 40.0% | |
| TTCCCATAGTTTCGGTAAAC+TGG | - | chr2_1:61924330-61924349 | None:intergenic | 40.0% | |
| ! | TGCTAGAACCCTTTTGACAT+TGG | + | chr2_1:61924485-61924504 | Msa0216200:CDS | 40.0% |
| GAACAAGCTCGATTATGTGT+TGG | + | chr2_1:61924590-61924609 | Msa0216200:CDS | 40.0% | |
| TGAAGACAAGAGTCTGAAGA+CGG | - | chr2_1:61924644-61924663 | None:intergenic | 40.0% | |
| CAGACTCTTGTCTTCAAATC+TGG | + | chr2_1:61924648-61924667 | Msa0216200:CDS | 40.0% | |
| TCTTGTCTTCAAATCTGGCA+TGG | + | chr2_1:61924653-61924672 | Msa0216200:CDS | 40.0% | |
| TTATCAGGCAGAGACACATT+AGG | + | chr2_1:61924703-61924722 | Msa0216200:CDS | 40.0% | |
| !! | TTTGTTTTCATAGGGTTGGG+AGG | + | chr2_1:61925172-61925191 | Msa0216200:intron | 40.0% |
| CTAACTCACCCACAAAACAA+TGG | - | chr2_1:61925592-61925611 | None:intergenic | 40.0% | |
| ! | TTGCCTGCCTACTAGGTTTT+TGG | - | chr2_1:61924269-61924288 | None:intergenic | 45.0% |
| TTTCGGTAAACTGGAACGTG+GGG | - | chr2_1:61924321-61924340 | None:intergenic | 45.0% | |
| GTTTCGGTAAACTGGAACGT+GGG | - | chr2_1:61924322-61924341 | None:intergenic | 45.0% | |
| AGTTTCGGTAAACTGGAACG+TGG | - | chr2_1:61924323-61924342 | None:intergenic | 45.0% | |
| ! | TTTGGATGCTGAGTTGAAGC+TGG | + | chr2_1:61924389-61924408 | Msa0216200:CDS | 45.0% |
| CAAGTCCATTCACCATGCTA+GGG | + | chr2_1:61924677-61924696 | Msa0216200:CDS | 45.0% | |
| AAGAACCCTAGCATGGTGAA+TGG | - | chr2_1:61924685-61924704 | None:intergenic | 45.0% | |
| ACCATGCTAGGGTTCTTATC+AGG | + | chr2_1:61924688-61924707 | Msa0216200:CDS | 45.0% | |
| AGTGAACATCCCATCCTTCA+TGG | + | chr2_1:61925200-61925219 | Msa0216200:CDS | 45.0% | |
| TGAATCAACCCTCACCATGA+AGG | - | chr2_1:61925217-61925236 | None:intergenic | 45.0% | |
| CGTGAAGCGAAAGAACCTTA+AGG | + | chr2_1:61925293-61925312 | Msa0216200:CDS | 45.0% | |
| AGGCAAGACACTAGCATCAT+AGG | + | chr2_1:61925735-61925754 | Msa0216200:three_prime_UTR | 45.0% | |
| CTATGTTCTCCTGAAGCATG+AGG | - | chr2_1:61925761-61925780 | None:intergenic | 45.0% | |
| !! | CCTGCCTACTAGGTTTTTGG+TGG | - | chr2_1:61924266-61924285 | None:intergenic | 50.0% |
| CCACCAAAAACCTAGTAGGC+AGG | + | chr2_1:61924263-61924282 | Msa0216200:CDS | 50.0% | |
| !! | TCCATACGAGAAGGAGCGTT+TGG | + | chr2_1:61924371-61924390 | Msa0216200:CDS | 50.0% |
| TCCAAACGCTCCTTCTCGTA+TGG | - | chr2_1:61924375-61924394 | None:intergenic | 50.0% | |
| ! | GATGCTGAGTTGAAGCTGGT+CGG | + | chr2_1:61924393-61924412 | Msa0216200:CDS | 50.0% |
| TTGAAGCTGGTCGGAGAGTA+TGG | + | chr2_1:61924402-61924421 | Msa0216200:CDS | 50.0% | |
| ! | TGGTCGGAGAGTATGGTCTT+CGG | + | chr2_1:61924409-61924428 | Msa0216200:CDS | 50.0% |
| ! | TTCGGTGTAAGAGAGAGCTG+TGG | + | chr2_1:61924427-61924446 | Msa0216200:CDS | 50.0% |
| GTGTAAGAGAGAGCTGTGGA+GGG | + | chr2_1:61924431-61924450 | Msa0216200:CDS | 50.0% | |
| TGGATGAGAAGAACCCTCGT+CGG | + | chr2_1:61924505-61924524 | Msa0216200:CDS | 50.0% | |
| AACCCTCGTCGGATCTTTGA+GGG | + | chr2_1:61924516-61924535 | Msa0216200:CDS | 50.0% | |
| ! | TTGAGGGTGACGCACTTTTG+AGG | + | chr2_1:61924532-61924551 | Msa0216200:CDS | 50.0% |
| ! | CCTAGCATGGTGAATGGACT+TGG | - | chr2_1:61924679-61924698 | None:intergenic | 50.0% |
| CCAAGTCCATTCACCATGCT+AGG | + | chr2_1:61924676-61924695 | Msa0216200:CDS | 50.0% | |
| GCCTGATAAGAACCCTAGCA+TGG | - | chr2_1:61924692-61924711 | None:intergenic | 50.0% | |
| ! | TTTTCATAGGGTTGGGAGGC+AGG | + | chr2_1:61925176-61925195 | Msa0216200:intron | 50.0% |
| ACATCCCATCCTTCATGGTG+AGG | + | chr2_1:61925205-61925224 | Msa0216200:CDS | 50.0% | |
| CATCCCATCCTTCATGGTGA+GGG | + | chr2_1:61925206-61925225 | Msa0216200:CDS | 50.0% | |
| CAACCCTCACCATGAAGGAT+GGG | - | chr2_1:61925212-61925231 | None:intergenic | 50.0% | |
| TCAACCCTCACCATGAAGGA+TGG | - | chr2_1:61925213-61925232 | None:intergenic | 50.0% | |
| ! | TTTTCCCTCACCAGTCCCTT+TGG | + | chr2_1:61925252-61925271 | Msa0216200:CDS | 50.0% |
| ATCACCACCAGAAGCCTTCT+TGG | - | chr2_1:61925325-61925344 | None:intergenic | 50.0% | |
| ! | AAGAAGGCTTCTGGTGGTGA+TGG | + | chr2_1:61925324-61925343 | Msa0216200:CDS | 50.0% |
| !! | TTCTGGTGGTGATGGAGATG+AGG | + | chr2_1:61925332-61925351 | Msa0216200:CDS | 50.0% |
| CCTTCTAAGCAGCAGCCTTA+AGG | - | chr2_1:61925430-61925449 | None:intergenic | 50.0% | |
| ! | CCTTAAGGCTGCTGCTTAGA+AGG | + | chr2_1:61925427-61925446 | Msa0216200:three_prime_UTR | 50.0% |
| ! | ATCCGGTGGTGACGAAAACA+AGG | + | chr2_1:61925451-61925470 | Msa0216200:three_prime_UTR | 50.0% |
| !!! | CTCCTTGTTTTCGTCACCAC+CGG | - | chr2_1:61925456-61925475 | None:intergenic | 50.0% |
| CATCATAGGCCTCATGCTTC+AGG | + | chr2_1:61925749-61925768 | Msa0216200:three_prime_UTR | 50.0% | |
| CCTAGTAGGCAGGCAAACAG+CGG | + | chr2_1:61924273-61924292 | Msa0216200:CDS | 55.0% | |
| TGGACGACGTGGCTTCTTGA+AGG | - | chr2_1:61924355-61924374 | None:intergenic | 55.0% | |
| TCCTTCTCGTATGGACGACG+TGG | - | chr2_1:61924366-61924385 | None:intergenic | 55.0% | |
| GGTGTAAGAGAGAGCTGTGG+AGG | + | chr2_1:61924430-61924449 | Msa0216200:CDS | 55.0% | |
| GAACCCTCGTCGGATCTTTG+AGG | + | chr2_1:61924515-61924534 | Msa0216200:CDS | 55.0% | |
| CACCCTCAAAGATCCGACGA+GGG | - | chr2_1:61924521-61924540 | None:intergenic | 55.0% | |
| TCACCCTCAAAGATCCGACG+AGG | - | chr2_1:61924522-61924541 | None:intergenic | 55.0% | |
| ! | ACCACCAAAGGGACTGGTGA+GGG | - | chr2_1:61925259-61925278 | None:intergenic | 55.0% |
| AAGACCACCACCAAAGGGAC+TGG | - | chr2_1:61925265-61925284 | None:intergenic | 55.0% | |
| CCAGGAAGACCACCACCAAA+GGG | - | chr2_1:61925270-61925289 | None:intergenic | 55.0% | |
| ACCAGGAAGACCACCACCAA+AGG | - | chr2_1:61925271-61925290 | None:intergenic | 55.0% | |
| TTCTTTCGCTTCACGCGACC+AGG | - | chr2_1:61925288-61925307 | None:intergenic | 55.0% | |
| CCTTCTTGGCTGCAGCCTTA+AGG | - | chr2_1:61925311-61925330 | None:intergenic | 55.0% | |
| CCTTAAGGCTGCAGCCAAGA+AGG | + | chr2_1:61925308-61925327 | Msa0216200:CDS | 55.0% | |
| !! | TGGTGGTGATGGAGATGAGG+AGG | + | chr2_1:61925335-61925354 | Msa0216200:CDS | 55.0% |
| !! | GCTGCTGCTTAGAAGGCATC+CGG | + | chr2_1:61925434-61925453 | Msa0216200:three_prime_UTR | 55.0% |
| ! | CGGTGGTGACGAAAACAAGG+AGG | + | chr2_1:61925454-61925473 | Msa0216200:three_prime_UTR | 55.0% |
| CCGCTGTTTGCCTGCCTACT+AGG | - | chr2_1:61924276-61924295 | None:intergenic | 60.0% | |
| AGTAGGCAGGCAAACAGCGG+CGG | + | chr2_1:61924276-61924295 | Msa0216200:CDS | 60.0% | |
| GCCACGTCGTCCATACGAGA+AGG | + | chr2_1:61924362-61924381 | Msa0216200:CDS | 60.0% | |
| TCCCTCACCAGTCCCTTTGG+TGG | + | chr2_1:61925255-61925274 | Msa0216200:CDS | 60.0% | |
| ! | CACCACCAAAGGGACTGGTG+AGG | - | chr2_1:61925260-61925279 | None:intergenic | 60.0% |
| CTCACCAGTCCCTTTGGTGG+TGG | + | chr2_1:61925258-61925277 | Msa0216200:CDS | 60.0% | |
| !! | CCCTTTGGTGGTGGTCTTCC+TGG | + | chr2_1:61925267-61925286 | Msa0216200:CDS | 60.0% |
| GCTGCAGCCAAGAAGGCTTC+TGG | + | chr2_1:61925315-61925334 | Msa0216200:CDS | 60.0% | |
| GCAGCCAAGAAGGCTTCTGG+TGG | + | chr2_1:61925318-61925337 | Msa0216200:CDS | 60.0% | |
| !! | GCTGCTTAGAAGGCATCCGG+TGG | + | chr2_1:61925437-61925456 | Msa0216200:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 61924219 | 61925929 | 61924219 | ID=Msa0216200;Name=Msa0216200 |
| chr2_1 | mRNA | 61924219 | 61925929 | 61924219 | ID=Msa0216200-mRNA-1;Parent=Msa0216200;Name=Msa0216200-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.5|1|1|1|2|561|229 |
| chr2_1 | exon | 61924219 | 61924724 | 61924219 | ID=Msa0216200-mRNA-1:exon:17106;Parent=Msa0216200-mRNA-1 |
| chr2_1 | exon | 61925185 | 61925929 | 61925185 | ID=Msa0216200-mRNA-1:exon:17107;Parent=Msa0216200-mRNA-1 |
| chr2_1 | CDS | 61924219 | 61924724 | 61924219 | ID=Msa0216200-mRNA-1:cds;Parent=Msa0216200-mRNA-1 |
| chr2_1 | CDS | 61925185 | 61925368 | 61925185 | ID=Msa0216200-mRNA-1:cds;Parent=Msa0216200-mRNA-1 |
| chr2_1 | three_prime_UTR | 61925369 | 61925929 | 61925369 | ID=Msa0216200-mRNA-1:three_prime_utr;Parent=Msa0216200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
