Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291300 | XP_013446004.1 | 97.596 | 416 | 7 | 2 | 1 | 415 | 1 | 414 | 0.0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291300 | sp|Q0J035|PANK2_ORYSJ | 63.359 | 393 | 137 | 5 | 14 | 402 | 77 | 466 | 1.99e-169 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291300 | A0A072TS59 | 97.596 | 416 | 7 | 2 | 1 | 415 | 1 | 414 | 0.0 | 832 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060070 | Msa1291300 | 0.813935 | 1.989326e-51 | -8.615850e-47 |
| Msa0614380 | Msa1291300 | 0.804120 | 2.515462e-49 | -8.615850e-47 |
| Msa0124320 | Msa1291300 | 0.810947 | 8.947560e-51 | -8.615850e-47 |
| Msa0136630 | Msa1291300 | 0.819892 | 9.147135e-53 | -8.615850e-47 |
| Msa1291300 | Msa1360020 | 0.843805 | 1.118041e-58 | -8.615850e-47 |
| Msa1291300 | Msa1430550 | 0.814214 | 1.726859e-51 | -8.615850e-47 |
| Msa0380600 | Msa1291300 | 0.811389 | 7.172971e-51 | -8.615850e-47 |
| Msa0430240 | Msa1291300 | 0.808481 | 3.031903e-50 | -8.615850e-47 |
| Msa1184690 | Msa1291300 | 0.803369 | 3.602046e-49 | -8.615850e-47 |
| Msa1214170 | Msa1291300 | 0.846788 | 1.742520e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291300 | MtrunA17_Chr8g0365801 | 97.596 | 416 | 7 | 2 | 1 | 415 | 1 | 414 | 0.0 | 832 |
| Msa1291300 | MtrunA17_Chr3g0117581 | 60.192 | 417 | 143 | 6 | 1 | 402 | 45 | 453 | 6.12e-169 | 496 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291300 | AT4G32180.2 | 59.155 | 426 | 145 | 9 | 1 | 408 | 50 | 464 | 4.80e-165 | 483 |
| Msa1291300 | AT4G32180.3 | 59.155 | 426 | 145 | 9 | 1 | 408 | 50 | 464 | 4.80e-165 | 483 |
| Msa1291300 | AT4G32180.1 | 59.155 | 426 | 145 | 9 | 1 | 408 | 50 | 464 | 1.94e-163 | 483 |
| Msa1291300 | AT1G60440.1 | 62.183 | 394 | 132 | 3 | 19 | 412 | 4 | 380 | 4.54e-156 | 446 |
| Msa1291300 | AT1G60440.2 | 69.128 | 298 | 90 | 1 | 115 | 412 | 8 | 303 | 4.97e-132 | 382 |
| Msa1291300 | AT1G60440.3 | 55.330 | 394 | 120 | 4 | 19 | 412 | 4 | 341 | 2.83e-128 | 374 |
Find 101 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATAGGTGGAGGCACTTTC+TGG | 0.182686 | 8_3:+46652806 | Msa1291300:CDS |
| GATTTCTCTGAAGTATTTCT+AGG | 0.205074 | 8_3:-46651386 | None:intergenic |
| CCATATCTTCTTGTTAATAT+TGG | 0.206082 | 8_3:+46652618 | Msa1291300:CDS |
| TACTTAAATGCCCTTCGTTT+TGG | 0.210747 | 8_3:+46654489 | Msa1291300:CDS |
| TATCTGTTGCTGTTAATTTC+TGG | 0.211148 | 8_3:+46654574 | Msa1291300:CDS |
| TGCACAAAATGAATATTATA+TGG | 0.225916 | 8_3:-46649771 | None:intergenic |
| GTTGCTGGAATTAAGTTATC+AGG | 0.258626 | 8_3:+46652967 | Msa1291300:CDS |
| ATAGATATTGGTTGACTTCC+GGG | 0.270706 | 8_3:-46651700 | None:intergenic |
| TTAATTACCTTAATAGATAT+TGG | 0.275525 | 8_3:-46651712 | None:intergenic |
| ATGCTTGTCGGAGATATTTA+TGG | 0.278415 | 8_3:+46653010 | Msa1291300:CDS |
| AAAGGCAATGTCTGATAAAA+AGG | 0.281844 | 8_3:+46653227 | Msa1291300:CDS |
| GCATGATTTGTTGTTGTAAC+TGG | 0.284304 | 8_3:+46655495 | Msa1291300:three_prime_UTR |
| AGAATGATTTCAAATAATAT+TGG | 0.285969 | 8_3:+46653294 | Msa1291300:CDS |
| GGAGGCACTTTCTGGGGTTT+AGG | 0.287312 | 8_3:+46652814 | Msa1291300:CDS |
| CTTCAGCTTTGATGAGTTGC+TGG | 0.304425 | 8_3:+46652952 | Msa1291300:CDS |
| ACATGGCCTCAAAGAATTAT+TGG | 0.307848 | 8_3:+46655328 | Msa1291300:CDS |
| AGGAACCATCCTGTTCTTAA+AGG | 0.312390 | 8_3:+46651419 | Msa1291300:CDS |
| AAGTCAACCAATATCTATTA+AGG | 0.312782 | 8_3:+46651705 | Msa1291300:CDS |
| GATAGTGTATCCATTGTAAA+AGG | 0.314727 | 8_3:-46654555 | None:intergenic |
| CTTTAATGAAGATTTGTAAT+AGG | 0.314760 | 8_3:+46655559 | Msa1291300:three_prime_UTR |
| AATAGATATTGGTTGACTTC+CGG | 0.321055 | 8_3:-46651701 | None:intergenic |
| TTGCGGCATGAAGGATTTCT+TGG | 0.322380 | 8_3:+46655275 | Msa1291300:CDS |
| CCGAGAAGCCTATACCTATA+TGG | 0.323228 | 8_3:+46652551 | Msa1291300:CDS |
| ACATGAGTTGTTGATGGATT+AGG | 0.328971 | 8_3:-46649902 | None:intergenic |
| GATGGATTAGGATCGGAATT+TGG | 0.330679 | 8_3:-46649890 | None:intergenic |
| TATCATCTTGCTCTCGATAT+TGG | 0.342399 | 8_3:+46649926 | Msa1291300:CDS |
| TATCCCTAGCCTTTCTTTGA+AGG | 0.348131 | 8_3:-46652182 | None:intergenic |
| ACTGCAATAGCATCTAGTTT+TGG | 0.351488 | 8_3:+46653204 | Msa1291300:CDS |
| TTGATCACCCATATAGGTAT+AGG | 0.360507 | 8_3:-46652559 | None:intergenic |
| CCAATATTAACAAGAAGATA+TGG | 0.371904 | 8_3:-46652618 | None:intergenic |
| TAACTTGGTCGGACTTTGTT+GGG | 0.379531 | 8_3:-46655363 | None:intergenic |
| CCATATAGGTATAGGCTTCT+CGG | 0.381859 | 8_3:-46652551 | None:intergenic |
| TTGAGCTTTCCTTTAAGAAC+AGG | 0.385427 | 8_3:-46651428 | None:intergenic |
| CTTCTTGTTAATATTGGATC+TGG | 0.386128 | 8_3:+46652624 | Msa1291300:CDS |
| TTGCCTTTGATCACCCATAT+AGG | 0.387321 | 8_3:-46652565 | None:intergenic |
| TATAGGTGGAGGCACTTTCT+GGG | 0.396912 | 8_3:+46652807 | Msa1291300:CDS |
| GGAAAGTTTGAGCGAGTTAG+TGG | 0.402390 | 8_3:+46652778 | Msa1291300:CDS |
| TCTTGACAAGGAAGATGAAA+TGG | 0.404418 | 8_3:+46652207 | Msa1291300:CDS |
| TTCATATAGGTGGAAGGAAA+TGG | 0.417291 | 8_3:+46652757 | Msa1291300:intron |
| GCTTGACCAATAATTCTTTG+AGG | 0.417859 | 8_3:-46655334 | None:intergenic |
| TGATAAACATGAGTTGTTGA+TGG | 0.420275 | 8_3:-46649908 | None:intergenic |
| TGCGGCTTAGATGATGTTAT+TGG | 0.423231 | 8_3:+46655463 | Msa1291300:exon |
| ATCCCTAGCCTTTCTTTGAA+GGG | 0.426273 | 8_3:-46652181 | None:intergenic |
| AGATTACAGACCCGAAGATA+TGG | 0.429533 | 8_3:+46653257 | Msa1291300:CDS |
| TATTATATGGGTTGGTAGGT+TGG | 0.441294 | 8_3:-46649758 | None:intergenic |
| TTACAAATCTTCATTAAAGA+AGG | 0.443378 | 8_3:-46655555 | None:intergenic |
| CAACTAGATGGTGAATTGTT+TGG | 0.453366 | 8_3:+46655413 | Msa1291300:CDS |
| TGAATATTATATGGGTTGGT+AGG | 0.460283 | 8_3:-46649762 | None:intergenic |
| GAAATGGATTGTCTTGTTGC+AGG | 0.461214 | 8_3:+46652223 | Msa1291300:CDS |
| ATCAACAGCGAAAGTTAACT+TGG | 0.461877 | 8_3:-46655378 | None:intergenic |
| AAGAGATCGAGCCATATCTT+CGG | 0.465688 | 8_3:-46653268 | None:intergenic |
| CGAGTTAGTGGAACGAGTAT+AGG | 0.467173 | 8_3:+46652790 | Msa1291300:CDS |
| ACCTCCAGGATGAAGTTTCA+TGG | 0.470308 | 8_3:-46651504 | None:intergenic |
| GCACAAAATGAATATTATAT+GGG | 0.481847 | 8_3:-46649770 | None:intergenic |
| TTAACTTGGTCGGACTTTGT+TGG | 0.484620 | 8_3:-46655364 | None:intergenic |
| ATGCAGACCCCTTCAAAGAA+AGG | 0.486872 | 8_3:+46652173 | Msa1291300:CDS |
| CGAGAAGCCTATACCTATAT+GGG | 0.487207 | 8_3:+46652552 | Msa1291300:CDS |
| AGAGATCGAGCCATATCTTC+GGG | 0.493566 | 8_3:-46653267 | None:intergenic |
| TCCCTAGCCTTTCTTTGAAG+GGG | 0.495185 | 8_3:-46652180 | None:intergenic |
| ACCATTGTTGTGAAGGCCAC+AGG | 0.503696 | 8_3:+46652133 | Msa1291300:intron |
| AATACTTCAGAGAAATCAAA+AGG | 0.505429 | 8_3:+46651392 | Msa1291300:CDS |
| CATCTTGCTCTCGATATTGG+AGG | 0.519040 | 8_3:+46649929 | Msa1291300:CDS |
| GAAGGATTTCTTGGAGCTGT+AGG | 0.521139 | 8_3:+46655284 | Msa1291300:CDS |
| CGGAGATATTTATGGTGGAA+TGG | 0.522518 | 8_3:+46653018 | Msa1291300:CDS |
| GATTTCAAATAATATTGGAC+AGG | 0.523645 | 8_3:+46653299 | Msa1291300:CDS |
| ATAGGTGGAGGCACTTTCTG+GGG | 0.526740 | 8_3:+46652808 | Msa1291300:CDS |
| GTTGTGAAGGCCACAGGTGG+TGG | 0.533246 | 8_3:+46652139 | Msa1291300:intron |
| GCAATGTTCTTGCGGCATGA+AGG | 0.537851 | 8_3:+46655266 | Msa1291300:CDS |
| AAAATGAATATTATATGGGT+TGG | 0.538111 | 8_3:-46649766 | None:intergenic |
| AAGATGCATGGTCAACTAGA+TGG | 0.539599 | 8_3:+46655401 | Msa1291300:CDS |
| AAAGAGGTAGATATGCTTGT+CGG | 0.545876 | 8_3:+46652998 | Msa1291300:CDS |
| TTTCAATTCATATAGGTGGA+AGG | 0.547834 | 8_3:+46652751 | Msa1291300:intron |
| ATCTGGTGTTAGCATGATCA+AGG | 0.553570 | 8_3:+46652641 | Msa1291300:CDS |
| ACCCCTTCAAAGAAAGGCTA+GGG | 0.559074 | 8_3:+46652179 | Msa1291300:CDS |
| TTCGCTGTTGATAAGATGCA+TGG | 0.566331 | 8_3:+46655389 | Msa1291300:CDS |
| AGAATTATTGGTCAAGCAAG+AGG | 0.566501 | 8_3:+46655340 | Msa1291300:CDS |
| TTGCTGGAATTAAGTTATCA+GGG | 0.566970 | 8_3:+46652968 | Msa1291300:CDS |
| AGTTGTTGATGGATTAGGAT+CGG | 0.569966 | 8_3:-46649897 | None:intergenic |
| AAGACCATGAAACTTCATCC+TGG | 0.584192 | 8_3:+46651500 | Msa1291300:CDS |
| GACCCCTTCAAAGAAAGGCT+AGG | 0.589090 | 8_3:+46652178 | Msa1291300:CDS |
| CAGAGAAATCAAAAGGCAGA+AGG | 0.591700 | 8_3:+46651399 | Msa1291300:CDS |
| TCCTCTTCAACCCAAAACGA+AGG | 0.596388 | 8_3:-46654500 | None:intergenic |
| CTTGTCGGAGATATTTATGG+TGG | 0.598989 | 8_3:+46653013 | Msa1291300:CDS |
| AGTCGGCACCAAGAAAATCC+CGG | 0.600104 | 8_3:+46651682 | Msa1291300:CDS |
| ATACCTATATGGGTGATCAA+AGG | 0.601771 | 8_3:+46652562 | Msa1291300:CDS |
| GTTAGTGGAACGAGTATAGG+TGG | 0.612326 | 8_3:+46652793 | Msa1291300:CDS |
| ATGTTTATCAGAACTCATGA+AGG | 0.615934 | 8_3:-46655309 | None:intergenic |
| AGGCGAAAGCAATGTTCTTG+CGG | 0.618547 | 8_3:+46655258 | Msa1291300:CDS |
| TGGTGATGAATTCAGGTAGT+CGG | 0.618928 | 8_3:+46651665 | Msa1291300:intron |
| ACAGCGAAAGTTAACTTGGT+CGG | 0.621202 | 8_3:-46655374 | None:intergenic |
| TGGTGGAATGGACTATGCAA+AGG | 0.622264 | 8_3:+46653030 | Msa1291300:CDS |
| GCTTTCCTTTAAGAACAGGA+TGG | 0.628821 | 8_3:-46651424 | None:intergenic |
| CCTCTTCAACCCAAAACGAA+GGG | 0.633918 | 8_3:-46654499 | None:intergenic |
| TTTGTATGAACCACCACCTG+TGG | 0.635445 | 8_3:-46652149 | None:intergenic |
| GCTAGGGATAAATCTTGACA+AGG | 0.666525 | 8_3:+46652195 | Msa1291300:CDS |
| AGTGGAACGAGTATAGGTGG+AGG | 0.675883 | 8_3:+46652796 | Msa1291300:CDS |
| TTATCAGGGCAACAACAAAG+AGG | 0.690955 | 8_3:+46652982 | Msa1291300:CDS |
| ACCATGAAACTTCATCCTGG+AGG | 0.702347 | 8_3:+46651503 | Msa1291300:CDS |
| TATTGAGTGTAGTGTGTATG+CGG | 0.711094 | 8_3:+46655445 | Msa1291300:CDS |
| ATTGTTGTGAAGGCCACAGG+TGG | 0.737174 | 8_3:+46652136 | Msa1291300:intron |
| TTCATGAGTTCTGATAAACA+TGG | 0.742858 | 8_3:+46655311 | Msa1291300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTGATGTTTAAATAT+GGG | - | chr8_3:46652325-46652344 | None:intergenic | 10.0% |
| !! | ATTTATTTGATGTTTAAATA+TGG | - | chr8_3:46652326-46652345 | None:intergenic | 10.0% |
| !! | AATATTAAAAAATTCAGAAT+TGG | - | chr8_3:46652703-46652722 | None:intergenic | 10.0% |
| !! | ATTTAAAAAAAAAGATTTAG+TGG | + | chr8_3:46653571-46653590 | Msa1291300:intron | 10.0% |
| !! | AAGAAGAAAAATAAACAAAA+TGG | + | chr8_3:46649844-46649863 | Msa1291300:exon | 15.0% |
| !! | TAATAAACGTTTAAATAAGT+TGG | - | chr8_3:46650151-46650170 | None:intergenic | 15.0% |
| !!! | TGATCATTTTTTTTTTATGA+AGG | + | chr8_3:46650667-46650686 | Msa1291300:intron | 15.0% |
| !! | TTAATTACCTTAATAGATAT+TGG | - | chr8_3:46651715-46651734 | None:intergenic | 15.0% |
| !! | AGAATGATTTCAAATAATAT+TGG | + | chr8_3:46653294-46653313 | Msa1291300:CDS | 15.0% |
| !!! | TGAATCTTTGTTTATTTTTT+AGG | + | chr8_3:46655225-46655244 | Msa1291300:intron | 15.0% |
| !! | AAAATGAATATTATATGGGT+TGG | - | chr8_3:46649769-46649788 | None:intergenic | 20.0% |
| !! | GCACAAAATGAATATTATAT+GGG | - | chr8_3:46649773-46649792 | None:intergenic | 20.0% |
| !! | TGCACAAAATGAATATTATA+TGG | - | chr8_3:46649774-46649793 | None:intergenic | 20.0% |
| !! | ATCAAAATTGATCAGAATAT+TGG | - | chr8_3:46650071-46650090 | None:intergenic | 20.0% |
| !!! | AATATTCTGATCAATTTTGA+TGG | + | chr8_3:46650070-46650089 | Msa1291300:intron | 20.0% |
| !!! | TTTTAGAATTAAGCTGTTTT+TGG | + | chr8_3:46650121-46650140 | Msa1291300:intron | 20.0% |
| !!! | TTTAGAATTAAGCTGTTTTT+GGG | + | chr8_3:46650122-46650141 | Msa1291300:intron | 20.0% |
| !!! | TATGCCTTAAGTTATTTTTT+TGG | - | chr8_3:46650369-46650388 | None:intergenic | 20.0% |
| !! | AAAAAAATAACTTAAGGCAT+AGG | + | chr8_3:46650368-46650387 | Msa1291300:intron | 20.0% |
| !! | TAATAGGATAATCCAATATA+AGG | + | chr8_3:46650441-46650460 | Msa1291300:intron | 20.0% |
| !! | ACAAATTTCGAATTTATAGA+AGG | + | chr8_3:46650575-46650594 | Msa1291300:intron | 20.0% |
| !!! | TTGGAACTTGTTAAAAAAAA+AGG | + | chr8_3:46650775-46650794 | Msa1291300:intron | 20.0% |
| !!! | GCTTAAAATTATGTTTTCTT+AGG | + | chr8_3:46651173-46651192 | Msa1291300:intron | 20.0% |
| !!! | AAAAGATGATGATTATTTTG+TGG | + | chr8_3:46651343-46651362 | Msa1291300:CDS | 20.0% |
| !! | AATATTTGATTACAGTGTAT+GGG | - | chr8_3:46651586-46651605 | None:intergenic | 20.0% |
| !! | TTACATCAATTAATTGTAAC+TGG | + | chr8_3:46651645-46651664 | Msa1291300:intron | 20.0% |
| !!! | ATACATTGCATTTTATTGAA+TGG | - | chr8_3:46652062-46652081 | None:intergenic | 20.0% |
| !! | TTAAACATCAAATAAATGAC+TGG | + | chr8_3:46652329-46652348 | Msa1291300:intron | 20.0% |
| !! | AAGATTATTTATTGAACGAA+TGG | - | chr8_3:46652373-46652392 | None:intergenic | 20.0% |
| !!! | AACATATATGCTAAACTTTT+GGG | - | chr8_3:46652402-46652421 | None:intergenic | 20.0% |
| !!! | TCAATGTTTTCAATTCATAT+AGG | + | chr8_3:46652744-46652763 | Msa1291300:intron | 20.0% |
| !!! | TTTTTAGGACATATTCATTA+TGG | + | chr8_3:46652880-46652899 | Msa1291300:intron | 20.0% |
| !!! | TTTTAGGACATATTCATTAT+GGG | + | chr8_3:46652881-46652900 | Msa1291300:intron | 20.0% |
| !! | ATTGTATCATCATATTAATC+AGG | - | chr8_3:46653085-46653104 | None:intergenic | 20.0% |
| !!! | ATTACTCTAAACGTTTTAAA+TGG | + | chr8_3:46653103-46653122 | Msa1291300:intron | 20.0% |
| !! | AAAAAATAAAACCAAATTGC+AGG | - | chr8_3:46653454-46653473 | None:intergenic | 20.0% |
| !! | ATACAGAGAAGAAAAAAATA+GGG | - | chr8_3:46653536-46653555 | None:intergenic | 20.0% |
| !! | AATACAGAGAAGAAAAAAAT+AGG | - | chr8_3:46653537-46653556 | None:intergenic | 20.0% |
| !! | TTGTTTATTAATCCTATACT+AGG | + | chr8_3:46653840-46653859 | Msa1291300:intron | 20.0% |
| !! | ATTGGTACAAATTATAGTTA+GGG | - | chr8_3:46654255-46654274 | None:intergenic | 20.0% |
| !! | AATTGGTACAAATTATAGTT+AGG | - | chr8_3:46654254-46654273 | None:intergenic | 20.0% |
| !!! | AACTATAATTTGTACCAATT+TGG | + | chr8_3:46654038-46654057 | Msa1291300:intron | 20.0% |
| !!! | AACTATAATTTGTACCAATT+TGG | - | chr8_3:46654038-46654057 | None:intergenic | 20.0% |
| !! | ATTGGTACAAATTATAGTTA+AGG | + | chr8_3:46654255-46654274 | Msa1291300:intron | 20.0% |
| !! | TTGGTACAAATTATAGTTAA+GGG | + | chr8_3:46654256-46654275 | Msa1291300:intron | 20.0% |
| !! | CATTAAAATTGAACAGAAAA+TGG | + | chr8_3:46654384-46654403 | Msa1291300:intron | 20.0% |
| !! | AATCTCAAATGAGTTATTAT+TGG | - | chr8_3:46654694-46654713 | None:intergenic | 20.0% |
| !!! | TGTTTATTTTTTAGGTCTAA+AGG | + | chr8_3:46655233-46655252 | Msa1291300:intron | 20.0% |
| !! | TTACAAATCTTCATTAAAGA+AGG | - | chr8_3:46655558-46655577 | None:intergenic | 20.0% |
| !! | CTTTAATGAAGATTTGTAAT+AGG | + | chr8_3:46655559-46655578 | Msa1291300:three_prime_UTR | 20.0% |
| !!! | CTATTTTTCTATTACATTTC+TGG | - | chr8_3:46655587-46655606 | None:intergenic | 20.0% |
| !!! | TTTTCATTGATATAAACAAG+TGG | - | chr8_3:46655613-46655632 | None:intergenic | 20.0% |
| ! | ACTACTACTAACAGTAAAAA+TGG | - | chr8_3:46649995-46650014 | None:intergenic | 25.0% |
| ! | ATTGATCAGAATATTGGAAA+AGG | - | chr8_3:46650065-46650084 | None:intergenic | 25.0% |
| ! | CAAGCCAAAAAAATAACTTA+AGG | + | chr8_3:46650362-46650381 | Msa1291300:intron | 25.0% |
| ! | TACACAAACACTTGTATAAT+AGG | + | chr8_3:46650425-46650444 | Msa1291300:intron | 25.0% |
| !! | CTTGGTAATTTCTTAACAAT+AGG | + | chr8_3:46650490-46650509 | Msa1291300:intron | 25.0% |
| ! | TCGAATTTATAGAAGGATTA+TGG | + | chr8_3:46650582-46650601 | Msa1291300:intron | 25.0% |
| !! | TTCTGATTTTGTTAGAATTG+TGG | + | chr8_3:46650806-46650825 | Msa1291300:intron | 25.0% |
| ! | ATACAATACAAGAGAATCAA+AGG | - | chr8_3:46650924-46650943 | None:intergenic | 25.0% |
| ! | GATTCTCTTGTATTGTATAT+AGG | + | chr8_3:46650926-46650945 | Msa1291300:intron | 25.0% |
| ! | GGAGATTAAATTAACACTAA+TGG | + | chr8_3:46650947-46650966 | Msa1291300:intron | 25.0% |
| ! | TTGTTCAATGTTAGAAATGT+GGG | - | chr8_3:46651063-46651082 | None:intergenic | 25.0% |
| ! | TTTGTTCAATGTTAGAAATG+TGG | - | chr8_3:46651064-46651083 | None:intergenic | 25.0% |
| !! | AAACATAATTTTAAGCTGAG+AGG | - | chr8_3:46651169-46651188 | None:intergenic | 25.0% |
| ! | TTAATGAGTACGGTATTATT+TGG | + | chr8_3:46651253-46651272 | Msa1291300:intron | 25.0% |
| ! | TAATGAGTACGGTATTATTT+GGG | + | chr8_3:46651254-46651273 | Msa1291300:intron | 25.0% |
| ! | AATACTTCAGAGAAATCAAA+AGG | + | chr8_3:46651392-46651411 | Msa1291300:CDS | 25.0% |
| ! | GAATATTTGATTACAGTGTA+TGG | - | chr8_3:46651587-46651606 | None:intergenic | 25.0% |
| ! | AAGTCAACCAATATCTATTA+AGG | + | chr8_3:46651705-46651724 | Msa1291300:CDS | 25.0% |
| !! | TTGATTTTTACTAAGCTTCT+AGG | - | chr8_3:46651938-46651957 | None:intergenic | 25.0% |
| ! | AGCATAATTAGTATGTTAGT+AGG | - | chr8_3:46652275-46652294 | None:intergenic | 25.0% |
| !! | CAACATATATGCTAAACTTT+TGG | - | chr8_3:46652403-46652422 | None:intergenic | 25.0% |
| !!! | TACCACATTGATTAGTTTTA+TGG | + | chr8_3:46652426-46652445 | Msa1291300:intron | 25.0% |
| ! | AATTCTCAAAGTGATTAAGA+AGG | - | chr8_3:46652479-46652498 | None:intergenic | 25.0% |
| ! | CCAATATTAACAAGAAGATA+TGG | - | chr8_3:46652621-46652640 | None:intergenic | 25.0% |
| ! | CCATATCTTCTTGTTAATAT+TGG | + | chr8_3:46652618-46652637 | Msa1291300:CDS | 25.0% |
| !! | ATGTTTTCAATTCATATAGG+TGG | + | chr8_3:46652747-46652766 | Msa1291300:intron | 25.0% |
| !! | TTCTTTCATTGATAACAGAT+TGG | + | chr8_3:46653171-46653190 | Msa1291300:intron | 25.0% |
| ! | GATTTCAAATAATATTGGAC+AGG | + | chr8_3:46653299-46653318 | Msa1291300:CDS | 25.0% |
| ! | GTACCTTTCTATGTTTATAA+TGG | + | chr8_3:46653489-46653508 | Msa1291300:intron | 25.0% |
| ! | CAACCATTATAAACATAGAA+AGG | - | chr8_3:46653495-46653514 | None:intergenic | 25.0% |
| ! | CTTTCTATGTTTATAATGGT+TGG | + | chr8_3:46653493-46653512 | Msa1291300:intron | 25.0% |
| !! | TAACATGCAAAGTATCATTT+AGG | - | chr8_3:46653629-46653648 | None:intergenic | 25.0% |
| !! | TGTTATTGATAGTTGTTTGA+TGG | + | chr8_3:46653644-46653663 | Msa1291300:intron | 25.0% |
| ! | TTATGTTAGATATTAGCGTT+TGG | + | chr8_3:46653781-46653800 | Msa1291300:intron | 25.0% |
| !! | TTTTATTAGCGAATCTTCTT+GGG | + | chr8_3:46653811-46653830 | Msa1291300:intron | 25.0% |
| ! | GAGACAATCAATTAAGTTAA+GGG | - | chr8_3:46654287-46654306 | None:intergenic | 25.0% |
| ! | TGAGACAATCAATTAAGTTA+AGG | - | chr8_3:46654286-46654305 | None:intergenic | 25.0% |
| ! | CTTAATTGATTGTCTCAATT+TGG | + | chr8_3:46654009-46654028 | Msa1291300:intron | 25.0% |
| ! | TTGGTACAAATTATAGTTAG+GGG | - | chr8_3:46654036-46654055 | None:intergenic | 25.0% |
| ! | CTTAATTGATTGTCTCAATT+TGG | - | chr8_3:46654009-46654028 | None:intergenic | 25.0% |
| ! | TGAGACAATCAATTAAGTTA+AGG | + | chr8_3:46654286-46654305 | Msa1291300:intron | 25.0% |
| ! | GAGACAATCAATTAAGTTAA+GGG | + | chr8_3:46654287-46654306 | Msa1291300:intron | 25.0% |
| !! | AGTTTCCATTCCTTTTTATT+CGG | - | chr8_3:46654332-46654351 | None:intergenic | 25.0% |
| ! | AAAATTAGAATTCTGTCCAA+TGG | + | chr8_3:46654407-46654426 | Msa1291300:intron | 25.0% |
| !! | AACTAATATGGATTATGTTG+TGG | + | chr8_3:46654648-46654667 | Msa1291300:intron | 25.0% |
| !! | ACTAATATGGATTATGTTGT+GGG | + | chr8_3:46654649-46654668 | Msa1291300:intron | 25.0% |
| !! | AGTTTTTGTGAATGTTGTAA+GGG | - | chr8_3:46654725-46654744 | None:intergenic | 25.0% |
| !! | AAGTTTTTGTGAATGTTGTA+AGG | - | chr8_3:46654726-46654745 | None:intergenic | 25.0% |
| !! | ACAACATTCACAAAAACTTT+TGG | + | chr8_3:46654727-46654746 | Msa1291300:intron | 25.0% |
| !! | ATGTTCAACTAGTATTGTTT+TGG | - | chr8_3:46654763-46654782 | None:intergenic | 25.0% |
| ! | ATCATTCTAATTGTTGAACA+TGG | - | chr8_3:46654877-46654896 | None:intergenic | 25.0% |
| ! | TTTCTGATTAAAATCATGTC+AGG | - | chr8_3:46655193-46655212 | None:intergenic | 25.0% |
| !! | TGAATATTATATGGGTTGGT+AGG | - | chr8_3:46649765-46649784 | None:intergenic | 30.0% |
| TGATAAACATGAGTTGTTGA+TGG | - | chr8_3:46649911-46649930 | None:intergenic | 30.0% | |
| !! | TGATCAATTTTGATGGAGAT+TGG | + | chr8_3:46650077-46650096 | Msa1291300:intron | 30.0% |
| ! | AGCTTGTTTACACCTTATAT+TGG | - | chr8_3:46650456-46650475 | None:intergenic | 30.0% |
| ATTAGGTGTATTCAGTTACA+TGG | - | chr8_3:46650626-46650645 | None:intergenic | 30.0% | |
| TGTAACTGAATACACCTAAT+TGG | + | chr8_3:46650626-46650645 | Msa1291300:intron | 30.0% | |
| TGAATACACCTAATTGGATA+AGG | + | chr8_3:46650632-46650651 | Msa1291300:intron | 30.0% | |
| AACAACAACCTTATCCAATT+AGG | - | chr8_3:46650643-46650662 | None:intergenic | 30.0% | |
| TAGTTGAATTGCTATCACTT+AGG | + | chr8_3:46650710-46650729 | Msa1291300:intron | 30.0% | |
| TCTAAGTTTCTTGTTGAGAA+TGG | + | chr8_3:46650737-46650756 | Msa1291300:intron | 30.0% | |
| CTAAGTTTCTTGTTGAGAAT+GGG | + | chr8_3:46650738-46650757 | Msa1291300:intron | 30.0% | |
| ! | TGATTTTGTTAGAATTGTGG+AGG | + | chr8_3:46650809-46650828 | Msa1291300:intron | 30.0% |
| GGCATAATTATAGCAGTAAA+TGG | - | chr8_3:46650903-46650922 | None:intergenic | 30.0% | |
| ! | AAAATGATTTGTAGCATCTC+TGG | + | chr8_3:46651082-46651101 | Msa1291300:intron | 30.0% |
| AATGTTCTCTATCTGTTGAT+AGG | + | chr8_3:46651293-46651312 | Msa1291300:intron | 30.0% | |
| !! | GATGATGATTATTTTGTGGA+CGG | + | chr8_3:46651347-46651366 | Msa1291300:CDS | 30.0% |
| !! | GATTTCTCTGAAGTATTTCT+AGG | - | chr8_3:46651389-46651408 | None:intergenic | 30.0% |
| ! | AATAGATATTGGTTGACTTC+CGG | - | chr8_3:46651704-46651723 | None:intergenic | 30.0% |
| ATAAGGGAAACAGAAACAAA+TGG | - | chr8_3:46651770-46651789 | None:intergenic | 30.0% | |
| ! | ATGTTTAGTATTGAAGCACT+TGG | + | chr8_3:46652080-46652099 | Msa1291300:intron | 30.0% |
| AATGAAAACCATTGTTGTGA+AGG | + | chr8_3:46652126-46652145 | Msa1291300:intron | 30.0% | |
| CACAAACAACTACACTATTA+TGG | - | chr8_3:46652452-46652471 | None:intergenic | 30.0% | |
| ! | TGTCTTGTTCTTCTTTCTAT+AGG | + | chr8_3:46652521-46652540 | Msa1291300:intron | 30.0% |
| CTTCTTGTTAATATTGGATC+TGG | + | chr8_3:46652624-46652643 | Msa1291300:CDS | 30.0% | |
| TTTCAATTCATATAGGTGGA+AGG | + | chr8_3:46652751-46652770 | Msa1291300:intron | 30.0% | |
| TTGCTGGAATTAAGTTATCA+GGG | + | chr8_3:46652968-46652987 | Msa1291300:CDS | 30.0% | |
| ATGGAGATCAACATTATCTT+AGG | + | chr8_3:46653122-46653141 | Msa1291300:intron | 30.0% | |
| TGGAGATCAACATTATCTTA+GGG | + | chr8_3:46653123-46653142 | Msa1291300:intron | 30.0% | |
| AACATTATCTTAGGGCTATT+CGG | + | chr8_3:46653131-46653150 | Msa1291300:intron | 30.0% | |
| !!! | AATAGCATCTAGTTTTGGAA+AGG | + | chr8_3:46653209-46653228 | Msa1291300:CDS | 30.0% |
| AAAGGCAATGTCTGATAAAA+AGG | + | chr8_3:46653227-46653246 | Msa1291300:CDS | 30.0% | |
| CACTAGATACATTGTACAAA+TGG | - | chr8_3:46653403-46653422 | None:intergenic | 30.0% | |
| CTTAGTCGCTAAATAAAAGA+AGG | + | chr8_3:46653600-46653619 | Msa1291300:intron | 30.0% | |
| AGAATATTGTTGTGTTCACA+AGG | + | chr8_3:46653674-46653693 | Msa1291300:intron | 30.0% | |
| GAATATTGTTGTGTTCACAA+GGG | + | chr8_3:46653675-46653694 | Msa1291300:intron | 30.0% | |
| ! | AGCTTTTACATACATATGCA+TGG | + | chr8_3:46653758-46653777 | Msa1291300:intron | 30.0% |
| !! | GTTTTATTAGCGAATCTTCT+TGG | + | chr8_3:46653810-46653829 | Msa1291300:intron | 30.0% |
| ! | GTTTTCATTATGCAGATGTT+AGG | - | chr8_3:46653922-46653941 | None:intergenic | 30.0% |
| ACTGTTATGAAGCGAATAAA+AGG | + | chr8_3:46653961-46653980 | Msa1291300:intron | 30.0% | |
| AATCAATTAAGTTAAGGGAC+CGG | - | chr8_3:46654292-46654311 | None:intergenic | 30.0% | |
| TTTGAGAGAAACTAACAGAA+AGG | - | chr8_3:46654097-46654116 | None:intergenic | 30.0% | |
| TCAAAAAAACGTGAACAGAA+AGG | + | chr8_3:46654112-46654131 | Msa1291300:intron | 30.0% | |
| CGTTAACTTATGTACCAATT+TGG | - | chr8_3:46654171-46654190 | None:intergenic | 30.0% | |
| AATCAATTAAGTTAAGGGAC+CGG | + | chr8_3:46654292-46654311 | Msa1291300:intron | 30.0% | |
| TTGAATAAGCCCGAATAAAA+AGG | + | chr8_3:46654319-46654338 | Msa1291300:intron | 30.0% | |
| ! | GTTTCCATTCCTTTTTATTC+GGG | - | chr8_3:46654331-46654350 | None:intergenic | 30.0% |
| !!! | TTGAAGAGGATATTTTTTGG+TGG | + | chr8_3:46654513-46654532 | Msa1291300:CDS | 30.0% |
| !!! | TTGGTGGATTTTTTATTCAG+AGG | + | chr8_3:46654529-46654548 | Msa1291300:CDS | 30.0% |
| GATAGTGTATCCATTGTAAA+AGG | - | chr8_3:46654558-46654577 | None:intergenic | 30.0% | |
| ! | TATCTGTTGCTGTTAATTTC+TGG | + | chr8_3:46654574-46654593 | Msa1291300:CDS | 30.0% |
| ! | TTAGTTATGAAGCACCAAAT+TGG | - | chr8_3:46654634-46654653 | None:intergenic | 30.0% |
| ! | TTGGTGCTTCATAACTAATA+TGG | + | chr8_3:46654636-46654655 | Msa1291300:intron | 30.0% |
| !! | ACAATTTTAGCACATTCCTA+AGG | + | chr8_3:46655028-46655047 | Msa1291300:intron | 30.0% |
| !! | CAATTTTAGCACATTCCTAA+GGG | + | chr8_3:46655029-46655048 | Msa1291300:intron | 30.0% |
| TAATGCATGGAAAGTTTGAT+AGG | + | chr8_3:46655134-46655153 | Msa1291300:intron | 30.0% | |
| !!! | ATTTTTTAGGTCTAAAGGTG+AGG | + | chr8_3:46655238-46655257 | Msa1291300:intron | 30.0% |
| ATGTTTATCAGAACTCATGA+AGG | - | chr8_3:46655312-46655331 | None:intergenic | 30.0% | |
| ! | TTCATGAGTTCTGATAAACA+TGG | + | chr8_3:46655311-46655330 | Msa1291300:CDS | 30.0% |
| !! | TATTATATGGGTTGGTAGGT+TGG | - | chr8_3:46649761-46649780 | None:intergenic | 35.0% |
| !! | AGTTGTTGATGGATTAGGAT+CGG | - | chr8_3:46649900-46649919 | None:intergenic | 35.0% |
| !! | ACATGAGTTGTTGATGGATT+AGG | - | chr8_3:46649905-46649924 | None:intergenic | 35.0% |
| TATCATCTTGCTCTCGATAT+TGG | + | chr8_3:46649926-46649945 | Msa1291300:CDS | 35.0% | |
| !! | TCAATTTTGATGGAGATTGG+TGG | + | chr8_3:46650080-46650099 | Msa1291300:intron | 35.0% |
| TCAATTGAAGTCCAATCGTT+CGG | + | chr8_3:46650206-46650225 | Msa1291300:intron | 35.0% | |
| TTCAGCTAGCATTTGAACTA+AGG | - | chr8_3:46650237-46650256 | None:intergenic | 35.0% | |
| AATCTATACTAGTGCGCTTA+CGG | + | chr8_3:46650336-46650355 | Msa1291300:intron | 35.0% | |
| TAGCACTTGTGATCAACAAT+AGG | + | chr8_3:46650527-46650546 | Msa1291300:intron | 35.0% | |
| TAGAAGGATTATGGTTCAAC+AGG | + | chr8_3:46650591-46650610 | Msa1291300:intron | 35.0% | |
| TATGAAGGTTGAAGTGATCA+TGG | + | chr8_3:46650682-46650701 | Msa1291300:intron | 35.0% | |
| TTCTTAGACTAGAAAACCGT+AGG | + | chr8_3:46651009-46651028 | Msa1291300:intron | 35.0% | |
| TGGTAATCTTAATCGACCTA+CGG | - | chr8_3:46651028-46651047 | None:intergenic | 35.0% | |
| AATGTGGGAAACAAACACAA+TGG | - | chr8_3:46651048-46651067 | None:intergenic | 35.0% | |
| CTAGATTAAGATAGTCTGCA+AGG | - | chr8_3:46651130-46651149 | None:intergenic | 35.0% | |
| CAGACTATCTTAATCTAGTG+AGG | + | chr8_3:46651132-46651151 | Msa1291300:intron | 35.0% | |
| ! | ACGGTATTATTTGGGTTTCT+TGG | + | chr8_3:46651262-46651281 | Msa1291300:intron | 35.0% |
| ! | TTGAGCTTTCCTTTAAGAAC+AGG | - | chr8_3:46651431-46651450 | None:intergenic | 35.0% |
| GACAAACACTATCAAGTATC+AGG | - | chr8_3:46651564-46651583 | None:intergenic | 35.0% | |
| GCAGAACAGTAATAAGAATG+TGG | - | chr8_3:46651622-46651641 | None:intergenic | 35.0% | |
| ! | TTGTAACTGGTGATGAATTC+AGG | + | chr8_3:46651658-46651677 | Msa1291300:intron | 35.0% |
| ! | ATAGATATTGGTTGACTTCC+GGG | - | chr8_3:46651703-46651722 | None:intergenic | 35.0% |
| ! | ACATATCTGCAGAAGCATAA+GGG | - | chr8_3:46651786-46651805 | None:intergenic | 35.0% |
| TTGCTTCAGATCATAGCAAA+GGG | - | chr8_3:46651865-46651884 | None:intergenic | 35.0% | |
| ATTGCTTCAGATCATAGCAA+AGG | - | chr8_3:46651866-46651885 | None:intergenic | 35.0% | |
| GGACACAAATTCAATAGCTA+AGG | - | chr8_3:46651896-46651915 | None:intergenic | 35.0% | |
| TAGCTATTGAATTTGTGTCC+TGG | + | chr8_3:46651896-46651915 | Msa1291300:intron | 35.0% | |
| TCTTGACAAGGAAGATGAAA+TGG | + | chr8_3:46652207-46652226 | Msa1291300:CDS | 35.0% | |
| TTGAACGAATGGCAGAAAAA+TGG | - | chr8_3:46652362-46652381 | None:intergenic | 35.0% | |
| GGCCATAAAACTAATCAATG+TGG | - | chr8_3:46652431-46652450 | None:intergenic | 35.0% | |
| ! | CTTTGAGAATTTCGCAATAC+AGG | + | chr8_3:46652488-46652507 | Msa1291300:intron | 35.0% |
| TTGATCACCCATATAGGTAT+AGG | - | chr8_3:46652562-46652581 | None:intergenic | 35.0% | |
| ATACCTATATGGGTGATCAA+AGG | + | chr8_3:46652562-46652581 | Msa1291300:CDS | 35.0% | |
| TTCATATAGGTGGAAGGAAA+TGG | + | chr8_3:46652757-46652776 | Msa1291300:intron | 35.0% | |
| !! | AGCTTTTAACTCAATGCAAG+AGG | + | chr8_3:46652839-46652858 | Msa1291300:CDS | 35.0% |
| GTTAACATCAATGCACTTTG+TGG | + | chr8_3:46652923-46652942 | Msa1291300:intron | 35.0% | |
| GTTGCTGGAATTAAGTTATC+AGG | + | chr8_3:46652967-46652986 | Msa1291300:CDS | 35.0% | |
| AAAGAGGTAGATATGCTTGT+CGG | + | chr8_3:46652998-46653017 | Msa1291300:CDS | 35.0% | |
| ATGCTTGTCGGAGATATTTA+TGG | + | chr8_3:46653010-46653029 | Msa1291300:CDS | 35.0% | |
| !! | ACTGCAATAGCATCTAGTTT+TGG | + | chr8_3:46653204-46653223 | Msa1291300:CDS | 35.0% |
| CTACTGAAATCAGTGCAAAA+TGG | - | chr8_3:46653711-46653730 | None:intergenic | 35.0% | |
| !!! | CATTTTGCACTGATTTCAGT+AGG | + | chr8_3:46653709-46653728 | Msa1291300:intron | 35.0% |
| GGCAGAGTTAAATATGATTG+TGG | + | chr8_3:46653730-46653749 | Msa1291300:intron | 35.0% | |
| ! | CTATACTAGGTGTCAGTTTT+CGG | + | chr8_3:46653853-46653872 | Msa1291300:intron | 35.0% |
| ATGTTAGGTTAGAGAATGGT+AGG | - | chr8_3:46653907-46653926 | None:intergenic | 35.0% | |
| AAAAGGCTTATTCAATCACC+CGG | + | chr8_3:46653978-46653997 | Msa1291300:intron | 35.0% | |
| ATCAATTAAGTTAAGGGACC+GGG | - | chr8_3:46654293-46654312 | None:intergenic | 35.0% | |
| CAAAACATAGAGGACCAAAT+TGG | - | chr8_3:46654055-46654074 | None:intergenic | 35.0% | |
| AGTAACAGAGCAAAACATAG+AGG | - | chr8_3:46654065-46654084 | None:intergenic | 35.0% | |
| GAACAGAAAGGACTAAAACT+AGG | + | chr8_3:46654124-46654143 | Msa1291300:intron | 35.0% | |
| GAAAGGACTAAAACTAGGAA+CGG | + | chr8_3:46654129-46654148 | Msa1291300:intron | 35.0% | |
| TTTGAGAGAAACTACCAGAA+AGG | + | chr8_3:46654195-46654214 | Msa1291300:intron | 35.0% | |
| !!! | TTGCTAGTTTTAGTCCTTTC+TGG | - | chr8_3:46654212-46654231 | None:intergenic | 35.0% |
| TAGCAACGAAGCAAAACATA+GGG | + | chr8_3:46654226-46654245 | Msa1291300:intron | 35.0% | |
| ATCAATTAAGTTAAGGGACC+GGG | + | chr8_3:46654293-46654312 | Msa1291300:intron | 35.0% | |
| TAAGCCCGAATAAAAAGGAA+TGG | + | chr8_3:46654324-46654343 | Msa1291300:intron | 35.0% | |
| ATAAGTGATCCTTTGTGAAG+AGG | - | chr8_3:46654436-46654455 | None:intergenic | 35.0% | |
| ! | TACTTAAATGCCCTTCGTTT+TGG | + | chr8_3:46654489-46654508 | Msa1291300:CDS | 35.0% |
| ! | ACTTAAATGCCCTTCGTTTT+GGG | + | chr8_3:46654490-46654509 | Msa1291300:CDS | 35.0% |
| !!! | GGGTTGAAGAGGATATTTTT+TGG | + | chr8_3:46654510-46654529 | Msa1291300:CDS | 35.0% |
| TGAACACAAAAGATAGCCTT+CGG | + | chr8_3:46654795-46654814 | Msa1291300:intron | 35.0% | |
| AAGCCAATGTTTATCTACGT+TGG | + | chr8_3:46654968-46654987 | Msa1291300:intron | 35.0% | |
| ATGCCAACGTAGATAAACAT+TGG | - | chr8_3:46654974-46654993 | None:intergenic | 35.0% | |
| !! | CTCTCATTTGCTATAATGCA+TGG | + | chr8_3:46655121-46655140 | Msa1291300:intron | 35.0% |
| ACATGGCCTCAAAGAATTAT+TGG | + | chr8_3:46655328-46655347 | Msa1291300:CDS | 35.0% | |
| GCTTGACCAATAATTCTTTG+AGG | - | chr8_3:46655337-46655356 | None:intergenic | 35.0% | |
| AGAATTATTGGTCAAGCAAG+AGG | + | chr8_3:46655340-46655359 | Msa1291300:CDS | 35.0% | |
| ATCAACAGCGAAAGTTAACT+TGG | - | chr8_3:46655381-46655400 | None:intergenic | 35.0% | |
| CAACTAGATGGTGAATTGTT+TGG | + | chr8_3:46655413-46655432 | Msa1291300:CDS | 35.0% | |
| TATTGAGTGTAGTGTGTATG+CGG | + | chr8_3:46655445-46655464 | Msa1291300:CDS | 35.0% | |
| !! | GCATGATTTGTTGTTGTAAC+TGG | + | chr8_3:46655495-46655514 | Msa1291300:three_prime_UTR | 35.0% |
| !! | GATGGATTAGGATCGGAATT+TGG | - | chr8_3:46649893-46649912 | None:intergenic | 40.0% |
| !! | GCTATTTTCGTAAGCTCTCT+CGG | + | chr8_3:46650397-46650416 | Msa1291300:intron | 40.0% |
| AGCTCTTTCAAATGCACTCT+TGG | + | chr8_3:46650472-46650491 | Msa1291300:intron | 40.0% | |
| TTCTTGTTGAGAATGGGTAG+TGG | + | chr8_3:46650744-46650763 | Msa1291300:intron | 40.0% | |
| TCTTGTTGAGAATGGGTAGT+GGG | + | chr8_3:46650745-46650764 | Msa1291300:intron | 40.0% | |
| CGTACTCATTAAAAGCCAGA+CGG | - | chr8_3:46651245-46651264 | None:intergenic | 40.0% | |
| !!! | CGTCTGGCTTTTAATGAGTA+CGG | + | chr8_3:46651243-46651262 | Msa1291300:intron | 40.0% |
| !! | TGATTATTTTGTGGACGGTG+AGG | + | chr8_3:46651352-46651371 | Msa1291300:CDS | 40.0% |
| CAGAGAAATCAAAAGGCAGA+AGG | + | chr8_3:46651399-46651418 | Msa1291300:CDS | 40.0% | |
| AGGAACCATCCTGTTCTTAA+AGG | + | chr8_3:46651419-46651438 | Msa1291300:CDS | 40.0% | |
| ! | GCTTTCCTTTAAGAACAGGA+TGG | - | chr8_3:46651427-46651446 | None:intergenic | 40.0% |
| AAGACCATGAAACTTCATCC+TGG | + | chr8_3:46651500-46651519 | Msa1291300:CDS | 40.0% | |
| ! | TGGTGATGAATTCAGGTAGT+CGG | + | chr8_3:46651665-46651684 | Msa1291300:intron | 40.0% |
| ! | CACATATCTGCAGAAGCATA+AGG | - | chr8_3:46651787-46651806 | None:intergenic | 40.0% |
| CATAGCAAAGGGACTCAAAT+TGG | - | chr8_3:46651854-46651873 | None:intergenic | 40.0% | |
| GGAATATATGTATGCTGACC+AGG | - | chr8_3:46651917-46651936 | None:intergenic | 40.0% | |
| ! | ATCCCTAGCCTTTCTTTGAA+GGG | - | chr8_3:46652184-46652203 | None:intergenic | 40.0% |
| ! | TATCCCTAGCCTTTCTTTGA+AGG | - | chr8_3:46652185-46652204 | None:intergenic | 40.0% |
| GCTAGGGATAAATCTTGACA+AGG | + | chr8_3:46652195-46652214 | Msa1291300:CDS | 40.0% | |
| !! | GAAATGGATTGTCTTGTTGC+AGG | + | chr8_3:46652223-46652242 | Msa1291300:CDS | 40.0% |
| ! | AGGAGCAAATTTTCTTCTCG+AGG | + | chr8_3:46652243-46652262 | Msa1291300:CDS | 40.0% |
| ! | GCAAATTTTCTTCTCGAGGT+AGG | + | chr8_3:46652247-46652266 | Msa1291300:intron | 40.0% |
| CCATATAGGTATAGGCTTCT+CGG | - | chr8_3:46652554-46652573 | None:intergenic | 40.0% | |
| CGAGAAGCCTATACCTATAT+GGG | + | chr8_3:46652552-46652571 | Msa1291300:CDS | 40.0% | |
| TTGCCTTTGATCACCCATAT+AGG | - | chr8_3:46652568-46652587 | None:intergenic | 40.0% | |
| ! | ATCTGGTGTTAGCATGATCA+AGG | + | chr8_3:46652641-46652660 | Msa1291300:CDS | 40.0% |
| TGGGTTCTATATAGACTCAC+AGG | + | chr8_3:46652900-46652919 | Msa1291300:intron | 40.0% | |
| GGGTTCTATATAGACTCACA+GGG | + | chr8_3:46652901-46652920 | Msa1291300:intron | 40.0% | |
| TTATCAGGGCAACAACAAAG+AGG | + | chr8_3:46652982-46653001 | Msa1291300:CDS | 40.0% | |
| CTTGTCGGAGATATTTATGG+TGG | + | chr8_3:46653013-46653032 | Msa1291300:CDS | 40.0% | |
| ! | CGGAGATATTTATGGTGGAA+TGG | + | chr8_3:46653018-46653037 | Msa1291300:CDS | 40.0% |
| AGATTACAGACCCGAAGATA+TGG | + | chr8_3:46653257-46653276 | Msa1291300:CDS | 40.0% | |
| AAGAGATCGAGCCATATCTT+CGG | - | chr8_3:46653271-46653290 | None:intergenic | 40.0% | |
| CAGTAGCATTTGGAAATCCA+CGG | - | chr8_3:46653336-46653355 | None:intergenic | 40.0% | |
| !! | AGGTATCGAGACATGCAAAA+AGG | - | chr8_3:46653434-46653453 | None:intergenic | 40.0% |
| ATGTCTCGATACCTGCAATT+TGG | + | chr8_3:46653440-46653459 | Msa1291300:intron | 40.0% | |
| CGAAAACTGACACCTAGTAT+AGG | - | chr8_3:46653855-46653874 | None:intergenic | 40.0% | |
| ! | GTCAGTTTTCGGTATCTAAG+AGG | + | chr8_3:46653864-46653883 | Msa1291300:intron | 40.0% |
| TTAGAGAATGGTAGGAAGAG+AGG | - | chr8_3:46653899-46653918 | None:intergenic | 40.0% | |
| GCAGATGTTAGGTTAGAGAA+TGG | - | chr8_3:46653911-46653930 | None:intergenic | 40.0% | |
| TAGGAACGGAGCAAAACATA+GGG | + | chr8_3:46654143-46654162 | Msa1291300:intron | 40.0% | |
| CAAAACATAGGGGACCAAAT+TGG | + | chr8_3:46654154-46654173 | Msa1291300:intron | 40.0% | |
| CTAGCAACGAAGCAAAACAT+AGG | + | chr8_3:46654225-46654244 | Msa1291300:intron | 40.0% | |
| AGCAACGAAGCAAAACATAG+GGG | + | chr8_3:46654227-46654246 | Msa1291300:intron | 40.0% | |
| CAAAACATAGGGGACCAAAT+TGG | + | chr8_3:46654154-46654173 | Msa1291300:intron | 40.0% | |
| CTTTGTGAAGAGGAAACCAT+TGG | - | chr8_3:46654426-46654445 | None:intergenic | 40.0% | |
| CAATGGTTTCCTCTTCACAA+AGG | + | chr8_3:46654424-46654443 | Msa1291300:intron | 40.0% | |
| !!! | TCAGAGGCATCCTTTTACAA+TGG | + | chr8_3:46654545-46654564 | Msa1291300:CDS | 40.0% |
| !! | AATTGGCAGTTGATGAACAG+AGG | - | chr8_3:46654617-46654636 | None:intergenic | 40.0% |
| CTGTTCATCAACTGCCAATT+TGG | + | chr8_3:46654617-46654636 | Msa1291300:intron | 40.0% | |
| GAACACAAAAGATAGCCTTC+GGG | + | chr8_3:46654796-46654815 | Msa1291300:intron | 40.0% | |
| CTGATCATGGTCATGTTTGT+CGG | - | chr8_3:46654828-46654847 | None:intergenic | 40.0% | |
| GGAAGCAAGTTATGGTTTGA+AGG | + | chr8_3:46655058-46655077 | Msa1291300:intron | 40.0% | |
| TAACTTGGTCGGACTTTGTT+GGG | - | chr8_3:46655366-46655385 | None:intergenic | 40.0% | |
| ! | TTAACTTGGTCGGACTTTGT+TGG | - | chr8_3:46655367-46655386 | None:intergenic | 40.0% |
| ! | ACAGCGAAAGTTAACTTGGT+CGG | - | chr8_3:46655377-46655396 | None:intergenic | 40.0% |
| ! | TTCGCTGTTGATAAGATGCA+TGG | + | chr8_3:46655389-46655408 | Msa1291300:CDS | 40.0% |
| AAGATGCATGGTCAACTAGA+TGG | + | chr8_3:46655401-46655420 | Msa1291300:CDS | 40.0% | |
| TGCGGCTTAGATGATGTTAT+TGG | + | chr8_3:46655463-46655482 | Msa1291300:exon | 40.0% | |
| CATCTTGCTCTCGATATTGG+AGG | + | chr8_3:46649929-46649948 | Msa1291300:CDS | 45.0% | |
| CTAAGGTTCTACCGAACGAT+TGG | - | chr8_3:46650220-46650239 | None:intergenic | 45.0% | |
| ATCATTGATCCGCTTCTCTG+TGG | + | chr8_3:46650260-46650279 | Msa1291300:intron | 45.0% | |
| TCATTGATCCGCTTCTCTGT+GGG | + | chr8_3:46650261-46650280 | Msa1291300:intron | 45.0% | |
| ACAGCTTAACTGCATTCCTC+CGG | - | chr8_3:46650288-46650307 | None:intergenic | 45.0% | |
| CTTGTTGAGAATGGGTAGTG+GGG | + | chr8_3:46650746-46650765 | Msa1291300:intron | 45.0% | |
| ! | TGCAATGTAAAGTGTCCGTC+TGG | + | chr8_3:46651227-46651246 | Msa1291300:intron | 45.0% |
| !! | TTATTTTGTGGACGGTGAGG+CGG | + | chr8_3:46651355-46651374 | Msa1291300:CDS | 45.0% |
| ACCATGAAACTTCATCCTGG+AGG | + | chr8_3:46651503-46651522 | Msa1291300:CDS | 45.0% | |
| ACCTCCAGGATGAAGTTTCA+TGG | - | chr8_3:46651507-46651526 | None:intergenic | 45.0% | |
| AAAATTCTCCACACACCTCC+AGG | - | chr8_3:46651521-46651540 | None:intergenic | 45.0% | |
| !! | GTTGACTTCCGGGATTTTCT+TGG | - | chr8_3:46651693-46651712 | None:intergenic | 45.0% |
| GCACATGCAGATGTAGAAGT+TGG | + | chr8_3:46652011-46652030 | Msa1291300:intron | 45.0% | |
| TTTGTATGAACCACCACCTG+TGG | - | chr8_3:46652152-46652171 | None:intergenic | 45.0% | |
| ATGCAGACCCCTTCAAAGAA+AGG | + | chr8_3:46652173-46652192 | Msa1291300:CDS | 45.0% | |
| ACCCCTTCAAAGAAAGGCTA+GGG | + | chr8_3:46652179-46652198 | Msa1291300:CDS | 45.0% | |
| ! | TCCCTAGCCTTTCTTTGAAG+GGG | - | chr8_3:46652183-46652202 | None:intergenic | 45.0% |
| CCGAGAAGCCTATACCTATA+TGG | + | chr8_3:46652551-46652570 | Msa1291300:CDS | 45.0% | |
| GGAAAGTTTGAGCGAGTTAG+TGG | + | chr8_3:46652778-46652797 | Msa1291300:CDS | 45.0% | |
| CGAGTTAGTGGAACGAGTAT+AGG | + | chr8_3:46652790-46652809 | Msa1291300:CDS | 45.0% | |
| GTTAGTGGAACGAGTATAGG+TGG | + | chr8_3:46652793-46652812 | Msa1291300:CDS | 45.0% | |
| !! | TATAGGTGGAGGCACTTTCT+GGG | + | chr8_3:46652807-46652826 | Msa1291300:CDS | 45.0% |
| ! | CTTCAGCTTTGATGAGTTGC+TGG | + | chr8_3:46652952-46652971 | Msa1291300:CDS | 45.0% |
| !! | TGGTGGAATGGACTATGCAA+AGG | + | chr8_3:46653030-46653049 | Msa1291300:CDS | 45.0% |
| AGAGATCGAGCCATATCTTC+GGG | - | chr8_3:46653270-46653289 | None:intergenic | 45.0% | |
| GAGTAGTGCACAGTAGCATT+TGG | - | chr8_3:46653346-46653365 | None:intergenic | 45.0% | |
| CTAGGAACGGAGCAAAACAT+AGG | + | chr8_3:46654142-46654161 | Msa1291300:intron | 45.0% | |
| AGGAACGGAGCAAAACATAG+GGG | + | chr8_3:46654144-46654163 | Msa1291300:intron | 45.0% | |
| TTCGGGCTTATTCAATCACC+CGG | - | chr8_3:46654314-46654333 | None:intergenic | 45.0% | |
| CCTCTTCAACCCAAAACGAA+GGG | - | chr8_3:46654502-46654521 | None:intergenic | 45.0% | |
| TCCTCTTCAACCCAAAACGA+AGG | - | chr8_3:46654503-46654522 | None:intergenic | 45.0% | |
| CGACAAACATGACCATGATC+AGG | + | chr8_3:46654826-46654845 | Msa1291300:intron | 45.0% | |
| GGTTAGCAGGAAGCAAGTTA+TGG | + | chr8_3:46655050-46655069 | Msa1291300:intron | 45.0% | |
| CTCACAAGCAAGTGTCAAGT+GGG | - | chr8_3:46655169-46655188 | None:intergenic | 45.0% | |
| ACTCACAAGCAAGTGTCAAG+TGG | - | chr8_3:46655170-46655189 | None:intergenic | 45.0% | |
| AGGCGAAAGCAATGTTCTTG+CGG | + | chr8_3:46655258-46655277 | Msa1291300:CDS | 45.0% | |
| TTGCGGCATGAAGGATTTCT+TGG | + | chr8_3:46655275-46655294 | Msa1291300:CDS | 45.0% | |
| GAAGGATTTCTTGGAGCTGT+AGG | + | chr8_3:46655284-46655303 | Msa1291300:CDS | 45.0% | |
| !!! | TTTATTACTTATTTATTTTT+AGG | + | chr8_3:46652865-46652884 | Msa1291300:intron | 5.0% |
| !! | ATGGGTAGTGGGGTTGACAT+TGG | + | chr8_3:46650756-46650775 | Msa1291300:intron | 50.0% |
| ! | AACTTCATCCTGGAGGTGTG+TGG | + | chr8_3:46651510-46651529 | Msa1291300:intron | 50.0% |
| AGTCGGCACCAAGAAAATCC+CGG | + | chr8_3:46651682-46651701 | Msa1291300:CDS | 50.0% | |
| ACCATTGTTGTGAAGGCCAC+AGG | + | chr8_3:46652133-46652152 | Msa1291300:intron | 50.0% | |
| ACCTGTGGCCTTCACAACAA+TGG | - | chr8_3:46652137-46652156 | None:intergenic | 50.0% | |
| ATTGTTGTGAAGGCCACAGG+TGG | + | chr8_3:46652136-46652155 | Msa1291300:intron | 50.0% | |
| GACCCCTTCAAAGAAAGGCT+AGG | + | chr8_3:46652178-46652197 | Msa1291300:CDS | 50.0% | |
| AGTGGAACGAGTATAGGTGG+AGG | + | chr8_3:46652796-46652815 | Msa1291300:CDS | 50.0% | |
| !! | GTATAGGTGGAGGCACTTTC+TGG | + | chr8_3:46652806-46652825 | Msa1291300:CDS | 50.0% |
| !! | ATAGGTGGAGGCACTTTCTG+GGG | + | chr8_3:46652808-46652827 | Msa1291300:CDS | 50.0% |
| GACAGGTCAGTATTGTACCG+TGG | + | chr8_3:46653316-46653335 | Msa1291300:intron | 50.0% | |
| !!! | CCCTTCGTTTTGGGTTGAAG+AGG | + | chr8_3:46654499-46654518 | Msa1291300:CDS | 50.0% |
| GTTCAGACGTAGCCTGATCA+TGG | - | chr8_3:46654841-46654860 | None:intergenic | 50.0% | |
| AGGCTACGTCTGAACTTCTC+AGG | + | chr8_3:46654846-46654865 | Msa1291300:intron | 50.0% | |
| ! | GCACATTCCTAAGGGTTAGC+AGG | + | chr8_3:46655037-46655056 | Msa1291300:intron | 50.0% |
| CTTGCTTCCTGCTAACCCTT+AGG | - | chr8_3:46655047-46655066 | None:intergenic | 50.0% | |
| GCAATGTTCTTGCGGCATGA+AGG | + | chr8_3:46655266-46655285 | Msa1291300:CDS | 50.0% | |
| !! | GGAGGCACTTTCTGGGGTTT+AGG | + | chr8_3:46652814-46652833 | Msa1291300:CDS | 55.0% |
| GTTTGTCGGTGACTTCCCGA+AGG | - | chr8_3:46654814-46654833 | None:intergenic | 55.0% | |
| GATCCGCTTCTCTGTGGGAC+CGG | + | chr8_3:46650266-46650285 | Msa1291300:intron | 60.0% | |
| GTTGTGAAGGCCACAGGTGG+TGG | + | chr8_3:46652139-46652158 | Msa1291300:intron | 60.0% | |
| CCTCCGGTCCCACAGAGAAG+CGG | - | chr8_3:46650272-46650291 | None:intergenic | 65.0% | |
| CCGCTTCTCTGTGGGACCGG+AGG | + | chr8_3:46650269-46650288 | Msa1291300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 46649751 | 46655670 | 46649751 | ID=Msa1291300;Name=Msa1291300 |
| chr8_3 | mRNA | 46649751 | 46655670 | 46649751 | ID=Msa1291300-mRNA-1;Parent=Msa1291300;Name=Msa1291300-mRNA-1;_AED=0.12;_eAED=0.12;_QI=112|0.88|0.9|1|1|1|10|198|415 |
| chr8_3 | exon | 46649751 | 46649950 | 46649751 | ID=Msa1291300-mRNA-1:exon:12908;Parent=Msa1291300-mRNA-1 |
| chr8_3 | exon | 46651315 | 46651524 | 46651315 | ID=Msa1291300-mRNA-1:exon:12909;Parent=Msa1291300-mRNA-1 |
| chr8_3 | exon | 46651680 | 46651726 | 46651680 | ID=Msa1291300-mRNA-1:exon:12910;Parent=Msa1291300-mRNA-1 |
| chr8_3 | exon | 46652148 | 46652264 | 46652148 | ID=Msa1291300-mRNA-1:exon:12911;Parent=Msa1291300-mRNA-1 |
| chr8_3 | exon | 46652543 | 46652662 | 46652543 | ID=Msa1291300-mRNA-1:exon:12912;Parent=Msa1291300-mRNA-1 |
| chr8_3 | exon | 46652766 | 46652860 | 46652766 | ID=Msa1291300-mRNA-1:exon:12913;Parent=Msa1291300-mRNA-1 |
| chr8_3 | exon | 46652952 | 46653051 | 46652952 | ID=Msa1291300-mRNA-1:exon:12914;Parent=Msa1291300-mRNA-1 |
| chr8_3 | exon | 46653189 | 46653320 | 46653189 | ID=Msa1291300-mRNA-1:exon:12915;Parent=Msa1291300-mRNA-1 |
| chr8_3 | exon | 46654483 | 46654595 | 46654483 | ID=Msa1291300-mRNA-1:exon:12916;Parent=Msa1291300-mRNA-1 |
| chr8_3 | exon | 46655247 | 46655670 | 46655247 | ID=Msa1291300-mRNA-1:exon:12917;Parent=Msa1291300-mRNA-1 |
| chr8_3 | five_prime_UTR | 46649751 | 46649862 | 46649751 | ID=Msa1291300-mRNA-1:five_prime_utr;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46649863 | 46649950 | 46649863 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46651315 | 46651524 | 46651315 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46651680 | 46651726 | 46651680 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46652148 | 46652264 | 46652148 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46652543 | 46652662 | 46652543 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46652766 | 46652860 | 46652766 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46652952 | 46653051 | 46652952 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46653189 | 46653320 | 46653189 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46654483 | 46654595 | 46654483 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | CDS | 46655247 | 46655472 | 46655247 | ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1 |
| chr8_3 | three_prime_UTR | 46655473 | 46655670 | 46655473 | ID=Msa1291300-mRNA-1:three_prime_utr;Parent=Msa1291300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
