AlfalfaGEDB | Msa1291300

M. sativa cultivar zhongmu-4 / Msa1291300

KEGG: K09680
GO: GO:0003674 GO:0003824 GO:0004594 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF03630.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291300	XP_013446004.1	97.596	416	7	2	1	415	1	414	0.0	832

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291300	sp\|Q0J035\|PANK2_ORYSJ	63.359	393	137	5	14	402	77	466	1.99e-169	501

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291300	A0A072TS59	97.596	416	7	2	1	415	1	414	0.0	832

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0060070	Msa1291300	0.813935	1.989326e-51	-8.615850e-47
Msa0124320	Msa1291300	0.810947	8.947560e-51	-8.615850e-47
Msa0136630	Msa1291300	0.819892	9.147135e-53	-8.615850e-47
Msa0380600	Msa1291300	0.811389	7.172971e-51	-8.615850e-47
Msa0430240	Msa1291300	0.808481	3.031903e-50	-8.615850e-47
Msa0614380	Msa1291300	0.804120	2.515462e-49	-8.615850e-47
Msa1184690	Msa1291300	0.803369	3.602046e-49	-8.615850e-47
Msa1214170	Msa1291300	0.846788	1.742520e-59	-8.615850e-47
Msa1291300	Msa1360020	0.843805	1.118041e-58	-8.615850e-47
Msa1291300	Msa1430550	0.814214	1.726859e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291300	MtrunA17_Chr8g0365801	97.596	416	7	2	1	415	1	414	0.0	832
Msa1291300	MtrunA17_Chr3g0117581	60.192	417	143	6	1	402	45	453	6.12e-169	496

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291300	AT4G32180.2	59.155	426	145	9	1	408	50	464	4.80e-165	483
Msa1291300	AT4G32180.3	59.155	426	145	9	1	408	50	464	4.80e-165	483
Msa1291300	AT4G32180.1	59.155	426	145	9	1	408	50	464	1.94e-163	483
Msa1291300	AT1G60440.1	62.183	394	132	3	19	412	4	380	4.54e-156	446
Msa1291300	AT1G60440.2	69.128	298	90	1	115	412	8	303	4.97e-132	382
Msa1291300	AT1G60440.3	55.330	394	120	4	19	412	4	341	2.83e-128	374

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Find 101 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAATATTATATGGGT+TGG	0.538111	8_3:-46649766	None:intergenic
AAAGAGGTAGATATGCTTGT+CGG	0.545876	8_3:+46652998	Msa1291300:CDS
AAAGGCAATGTCTGATAAAA+AGG	0.281844	8_3:+46653227	Msa1291300:CDS
AAGACCATGAAACTTCATCC+TGG	0.584192	8_3:+46651500	Msa1291300:CDS
AAGAGATCGAGCCATATCTT+CGG	0.465688	8_3:-46653268	None:intergenic
AAGATGCATGGTCAACTAGA+TGG	0.539599	8_3:+46655401	Msa1291300:CDS
AAGTCAACCAATATCTATTA+AGG	0.312782	8_3:+46651705	Msa1291300:CDS
AATACTTCAGAGAAATCAAA+AGG	0.505429	8_3:+46651392	Msa1291300:CDS
AATAGATATTGGTTGACTTC+CGG	0.321055	8_3:-46651701	None:intergenic
ACAGCGAAAGTTAACTTGGT+CGG	0.621202	8_3:-46655374	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATAAACATGAGTTGTTGA+TGG	-	chr8_3:46649911-46649930	None:intergenic	30.0%
ATTAGGTGTATTCAGTTACA+TGG	-	chr8_3:46650626-46650645	None:intergenic	30.0%
TGTAACTGAATACACCTAAT+TGG	+	chr8_3:46650626-46650645	Msa1291300:intron	30.0%
TGAATACACCTAATTGGATA+AGG	+	chr8_3:46650632-46650651	Msa1291300:intron	30.0%
AACAACAACCTTATCCAATT+AGG	-	chr8_3:46650643-46650662	None:intergenic	30.0%
TAGTTGAATTGCTATCACTT+AGG	+	chr8_3:46650710-46650729	Msa1291300:intron	30.0%
TCTAAGTTTCTTGTTGAGAA+TGG	+	chr8_3:46650737-46650756	Msa1291300:intron	30.0%
CTAAGTTTCTTGTTGAGAAT+GGG	+	chr8_3:46650738-46650757	Msa1291300:intron	30.0%
GGCATAATTATAGCAGTAAA+TGG	-	chr8_3:46650903-46650922	None:intergenic	30.0%
AATGTTCTCTATCTGTTGAT+AGG	+	chr8_3:46651293-46651312	Msa1291300:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	46649751	46655670	46649751	ID=Msa1291300;Name=Msa1291300
chr8_3	mRNA	46649751	46655670	46649751	ID=Msa1291300-mRNA-1;Parent=Msa1291300;Name=Msa1291300-mRNA-1;_AED=0.12;_eAED=0.12;_QI=112\|0.88\|0.9\|1\|1\|1\|10\|198\|415
chr8_3	exon	46649751	46649950	46649751	ID=Msa1291300-mRNA-1:exon:12908;Parent=Msa1291300-mRNA-1
chr8_3	exon	46651315	46651524	46651315	ID=Msa1291300-mRNA-1:exon:12909;Parent=Msa1291300-mRNA-1
chr8_3	exon	46651680	46651726	46651680	ID=Msa1291300-mRNA-1:exon:12910;Parent=Msa1291300-mRNA-1
chr8_3	exon	46652148	46652264	46652148	ID=Msa1291300-mRNA-1:exon:12911;Parent=Msa1291300-mRNA-1
chr8_3	exon	46652543	46652662	46652543	ID=Msa1291300-mRNA-1:exon:12912;Parent=Msa1291300-mRNA-1
chr8_3	exon	46652766	46652860	46652766	ID=Msa1291300-mRNA-1:exon:12913;Parent=Msa1291300-mRNA-1
chr8_3	exon	46652952	46653051	46652952	ID=Msa1291300-mRNA-1:exon:12914;Parent=Msa1291300-mRNA-1
chr8_3	exon	46653189	46653320	46653189	ID=Msa1291300-mRNA-1:exon:12915;Parent=Msa1291300-mRNA-1
chr8_3	exon	46654483	46654595	46654483	ID=Msa1291300-mRNA-1:exon:12916;Parent=Msa1291300-mRNA-1
chr8_3	exon	46655247	46655670	46655247	ID=Msa1291300-mRNA-1:exon:12917;Parent=Msa1291300-mRNA-1
chr8_3	five_prime_UTR	46649751	46649862	46649751	ID=Msa1291300-mRNA-1:five_prime_utr;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46649863	46649950	46649863	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46651315	46651524	46651315	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46651680	46651726	46651680	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46652148	46652264	46652148	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46652543	46652662	46652543	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46652766	46652860	46652766	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46652952	46653051	46652952	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46653189	46653320	46653189	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46654483	46654595	46654483	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	CDS	46655247	46655472	46655247	ID=Msa1291300-mRNA-1:cds;Parent=Msa1291300-mRNA-1
chr8_3	three_prime_UTR	46655473	46655670	46655473	ID=Msa1291300-mRNA-1:three_prime_utr;Parent=Msa1291300-mRNA-1

Gene Sequence

>Msa1291300

ATGGATCAAAGAGAGTTTGAAATTCAACCAAATTCCGATCCTAATCCATCAACAACTCATGTTTATCATCTTGCTCTCGATATTGGAGGATCTCTTAACAAATTAGTATACTTCACAAAAGATGATGATTATTTTGTGGACGGTGAGGCGGAGATATCTCCTAGAAATACTTCAGAGAAATCAAAAGGCAGAAGGAACCATCCTGTTCTTAAAGGAAAGCTCAATTTTAAGAAGTTTGAAACAAGCAAGATGAACGATTGTATAGATTTTATCAAGACCATGAAACTTCATCCTGGAGGTAGTCGGCACCAAGAAAATCCCGGAAGTCAACCAATATCTATTAAGGCCACAGGTGGTGGTTCATACAAATATGCAGACCCCTTCAAAGAAAGGCTAGGGATAAATCTTGACAAGGAAGATGAAATGGATTGTCTTGTTGCAGGAGCAAATTTTCTTCTCGAGGTAGTCGACCGAGAAGCCTATACCTATATGGGTGATCAAAGGCAATTTGTGCAGATAGATCAAAATGATCTGTATCCATATCTTCTTGTTAATATTGGATCTGGTGTTAGCATGATCAAGGTGGAAGGAAATGGAAAGTTTGAGCGAGTTAGTGGAACGAGTATAGGTGGAGGCACTTTCTGGGGTTTAGGAAAGCTTTTAACTCAATGCAAGAGCTTCAGCTTTGATGAGTTGCTGGAATTAAGTTATCAGGGCAACAACAAAGAGGTAGATATGCTTGTCGGAGATATTTATGGTGGAATGGACTATGCAAAGATTGGTCTTTCATCTACTGCAATAGCATCTAGTTTTGGAAAGGCAATGTCTGATAAAAAGGAGCGAGAAGATTACAGACCCGAAGATATGGCTCGATCTCTTCTAAGAATGATTTCAAATAATATTGGACAGATCTCTTACTTAAATGCCCTTCGTTTTGGGTTGAAGAGGATATTTTTTGGTGGATTTTTTATTCAGAGGCATCCTTTTACAATGGATACACTATCTGTTGCTGTTAATTTCTGGTCTAAAGGTGAGGCGAAAGCAATGTTCTTGCGGCATGAAGGATTTCTTGGAGCTGTAGGTGCCTTCATGAGTTCTGATAAACATGGCCTCAAAGAATTATTGGTCAAGCAAGAGGCCCAACAAAGTCCGACCAAGTTAACTTTCGCTGTTGATAAGATGCATGGTCAACTAGATGGTGAATTGTTTGGTGATGAAAGTATTGAGTGTAGTGTGTATGCGGCTTAG

Protein sequence

>Msa1291300

MDQREFEIQPNSDPNPSTTHVYHLALDIGGSLNKLVYFTKDDDYFVDGEAEISPRNTSEKSKGRRNHPVLKGKLNFKKFETSKMNDCIDFIKTMKLHPGGSRHQENPGSQPISIKATGGGSYKYADPFKERLGINLDKEDEMDCLVAGANFLLEVVDREAYTYMGDQRQFVQIDQNDLYPYLLVNIGSGVSMIKVEGNGKFERVSGTSIGGGTFWGLGKLLTQCKSFSFDELLELSYQGNNKEVDMLVGDIYGGMDYAKIGLSSTAIASSFGKAMSDKKEREDYRPEDMARSLLRMISNNIGQISYLNALRFGLKRIFFGGFFIQRHPFTMDTLSVAVNFWSKGEAKAMFLRHEGFLGAVGAFMSSDKHGLKELLVKQEAQQSPTKLTFAVDKMHGQLDGELFGDESIECSVYAA*